Query 022306
Match_columns 299
No_of_seqs 25 out of 27
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 02:32:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 96.8 0.035 7.6E-07 54.0 13.7 54 158-211 77-130 (428)
2 PF10186 Atg14: UV radiation r 96.4 0.34 7.4E-06 43.3 16.5 78 102-179 25-107 (302)
3 PF10174 Cast: RIM-binding pro 95.9 0.19 4.2E-06 53.8 14.7 111 108-218 249-363 (775)
4 PRK09039 hypothetical protein; 95.9 0.38 8.2E-06 46.5 15.4 85 134-218 115-204 (343)
5 PRK11637 AmiB activator; Provi 95.8 0.2 4.3E-06 48.8 13.1 80 102-181 45-128 (428)
6 TIGR02169 SMC_prok_A chromosom 95.8 0.55 1.2E-05 49.3 16.9 29 185-213 890-918 (1164)
7 TIGR02169 SMC_prok_A chromosom 95.6 0.66 1.4E-05 48.8 16.9 79 140-218 852-930 (1164)
8 PF13870 DUF4201: Domain of un 95.3 1.8 3.8E-05 37.5 16.9 119 100-218 9-132 (177)
9 PRK09039 hypothetical protein; 95.3 2.6 5.7E-05 40.8 18.4 29 158-186 153-181 (343)
10 PF15619 Lebercilin: Ciliary p 95.1 1.2 2.5E-05 40.4 14.7 103 103-215 74-188 (194)
11 PHA02562 46 endonuclease subun 95.0 0.7 1.5E-05 45.4 14.1 96 104-206 299-394 (562)
12 TIGR02168 SMC_prok_B chromosom 94.8 1.6 3.5E-05 45.5 16.7 13 251-263 967-979 (1179)
13 PF00261 Tropomyosin: Tropomyo 94.7 2.7 5.9E-05 38.2 16.1 84 135-218 85-168 (237)
14 cd07664 BAR_SNX2 The Bin/Amphi 94.7 2.2 4.7E-05 39.6 15.5 85 135-221 83-189 (234)
15 PF00038 Filament: Intermediat 94.6 2 4.3E-05 39.5 15.2 105 109-216 193-308 (312)
16 PF12718 Tropomyosin_1: Tropom 94.6 1.6 3.4E-05 37.6 13.5 67 135-201 73-139 (143)
17 PRK03918 chromosome segregatio 94.6 2.2 4.7E-05 44.5 16.9 106 107-212 172-280 (880)
18 PRK03918 chromosome segregatio 94.5 7.2 0.00016 40.8 20.7 45 174-218 388-432 (880)
19 KOG0996 Structural maintenance 94.5 0.61 1.3E-05 52.3 13.1 112 102-217 856-968 (1293)
20 PF07888 CALCOCO1: Calcium bin 94.4 1.7 3.6E-05 45.4 15.4 45 109-156 141-185 (546)
21 KOG0243 Kinesin-like protein [ 94.4 1.9 4E-05 48.0 16.4 182 33-217 360-558 (1041)
22 TIGR01843 type_I_hlyD type I s 94.2 3.1 6.7E-05 38.9 15.6 17 200-216 248-264 (423)
23 cd07665 BAR_SNX1 The Bin/Amphi 94.2 2 4.3E-05 40.1 14.1 84 135-220 83-188 (234)
24 COG1196 Smc Chromosome segrega 94.2 3 6.4E-05 46.1 17.6 10 260-269 530-539 (1163)
25 PHA02562 46 endonuclease subun 94.1 1.5 3.3E-05 43.1 14.1 28 242-269 465-492 (562)
26 PRK02224 chromosome segregatio 94.0 1.7 3.8E-05 45.5 14.9 46 105-150 181-228 (880)
27 KOG0250 DNA repair protein RAD 93.9 2.1 4.6E-05 47.7 15.8 117 102-218 286-456 (1074)
28 PF08317 Spc7: Spc7 kinetochor 93.9 4 8.6E-05 38.9 15.9 60 157-216 210-269 (325)
29 smart00787 Spc7 Spc7 kinetocho 93.8 2.6 5.6E-05 40.7 14.6 83 134-216 178-264 (312)
30 PF13851 GAS: Growth-arrest sp 93.8 5 0.00011 36.3 16.9 113 100-216 23-140 (201)
31 PF10186 Atg14: UV radiation r 93.7 4.9 0.00011 36.0 20.4 107 102-208 32-150 (302)
32 PF14915 CCDC144C: CCDC144C pr 93.6 3.5 7.5E-05 40.4 15.1 85 134-218 157-241 (305)
33 TIGR01843 type_I_hlyD type I s 93.6 2.4 5.2E-05 39.6 13.7 27 190-216 245-271 (423)
34 PF10174 Cast: RIM-binding pro 93.3 3.6 7.7E-05 44.5 16.1 114 105-218 337-506 (775)
35 PF05701 WEMBL: Weak chloropla 93.2 5.4 0.00012 40.7 16.5 107 104-210 281-405 (522)
36 PRK02224 chromosome segregatio 93.2 2.9 6.3E-05 43.9 15.0 12 258-269 435-446 (880)
37 PF05701 WEMBL: Weak chloropla 93.0 5.4 0.00012 40.7 16.1 111 105-215 219-333 (522)
38 PRK01156 chromosome segregatio 93.0 11 0.00024 40.0 18.9 72 130-202 676-747 (895)
39 KOG0933 Structural maintenance 92.7 4.4 9.6E-05 45.4 15.8 32 102-133 739-770 (1174)
40 PF06818 Fez1: Fez1; InterPro 92.7 2.9 6.2E-05 38.8 12.4 96 105-217 11-106 (202)
41 COG1579 Zn-ribbon protein, pos 92.4 10 0.00022 35.9 16.1 48 102-152 29-76 (239)
42 PF10146 zf-C4H2: Zinc finger- 92.4 7 0.00015 36.5 14.7 102 106-214 3-104 (230)
43 TIGR00606 rad50 rad50. This fa 92.3 5 0.00011 44.9 16.1 133 135-272 528-678 (1311)
44 KOG0161 Myosin class II heavy 92.3 4.1 8.9E-05 48.1 15.8 79 135-213 908-986 (1930)
45 TIGR00606 rad50 rad50. This fa 92.1 2.9 6.4E-05 46.6 14.0 70 104-174 799-878 (1311)
46 PF00261 Tropomyosin: Tropomyo 91.8 2.2 4.8E-05 38.8 10.7 62 103-164 7-86 (237)
47 KOG0980 Actin-binding protein 91.8 6.5 0.00014 43.5 15.5 52 167-218 463-514 (980)
48 COG1196 Smc Chromosome segrega 91.7 7.2 0.00016 43.2 16.2 70 135-204 828-897 (1163)
49 PF14915 CCDC144C: CCDC144C pr 91.6 13 0.00029 36.5 16.0 83 135-217 137-219 (305)
50 PF08614 ATG16: Autophagy prot 91.5 1.7 3.6E-05 38.5 9.2 48 135-182 123-170 (194)
51 PF07888 CALCOCO1: Calcium bin 91.4 10 0.00023 39.7 16.1 30 37-67 80-110 (546)
52 PF09738 DUF2051: Double stran 91.2 1.1 2.4E-05 43.3 8.4 128 91-220 82-248 (302)
53 COG3883 Uncharacterized protei 91.2 13 0.00029 35.7 15.5 100 104-206 52-194 (265)
54 KOG0977 Nuclear envelope prote 91.0 3.4 7.4E-05 43.2 12.2 83 133-215 111-193 (546)
55 PF08317 Spc7: Spc7 kinetochor 90.9 15 0.00032 35.2 15.5 51 164-214 210-260 (325)
56 TIGR01005 eps_transp_fam exopo 90.8 4.4 9.6E-05 42.1 12.9 84 135-218 316-403 (754)
57 PRK10884 SH3 domain-containing 90.7 5.2 0.00011 36.6 11.9 84 102-212 91-176 (206)
58 PF08614 ATG16: Autophagy prot 90.4 1.5 3.3E-05 38.7 8.0 97 105-218 75-171 (194)
59 KOG0161 Myosin class II heavy 90.0 9.3 0.0002 45.3 15.7 110 109-218 990-1110(1930)
60 PF00038 Filament: Intermediat 90.0 12 0.00027 34.4 13.8 81 138-218 165-250 (312)
61 TIGR03007 pepcterm_ChnLen poly 90.0 9.7 0.00021 37.4 13.8 10 107-116 171-180 (498)
62 PF04156 IncA: IncA protein; 89.9 12 0.00026 32.2 15.4 20 194-213 168-187 (191)
63 PRK01156 chromosome segregatio 89.8 16 0.00035 38.7 16.2 13 243-255 799-811 (895)
64 PF10018 Med4: Vitamin-D-recep 89.5 2.2 4.8E-05 37.8 8.3 96 118-225 5-101 (188)
65 PF04156 IncA: IncA protein; 89.4 13 0.00028 32.1 12.7 13 177-189 158-170 (191)
66 PF06818 Fez1: Fez1; InterPro 89.2 4.4 9.6E-05 37.5 10.3 86 133-218 8-93 (202)
67 TIGR03007 pepcterm_ChnLen poly 88.9 9.8 0.00021 37.4 13.1 60 107-166 164-235 (498)
68 PF09304 Cortex-I_coil: Cortex 88.7 7.4 0.00016 33.1 10.3 48 131-179 54-102 (107)
69 PF15070 GOLGA2L5: Putative go 88.6 24 0.00053 37.3 16.3 104 101-204 84-215 (617)
70 PF04849 HAP1_N: HAP1 N-termin 88.5 3.5 7.6E-05 40.3 9.5 66 102-167 232-301 (306)
71 PF13851 GAS: Growth-arrest sp 88.5 19 0.00041 32.6 16.0 101 102-212 60-171 (201)
72 KOG0250 DNA repair protein RAD 88.0 19 0.00041 40.6 15.6 107 102-215 226-361 (1074)
73 PF12329 TMF_DNA_bd: TATA elem 87.0 6.1 0.00013 30.8 8.3 52 115-166 2-57 (74)
74 PF09763 Sec3_C: Exocyst compl 87.0 29 0.00063 36.3 15.7 110 171-290 45-163 (701)
75 TIGR01005 eps_transp_fam exopo 86.9 19 0.00041 37.6 14.3 60 106-165 196-267 (754)
76 TIGR03017 EpsF chain length de 86.7 17 0.00038 35.0 13.0 82 135-216 282-367 (444)
77 PF05384 DegS: Sensor protein 86.4 21 0.00046 31.8 12.5 93 123-215 15-108 (159)
78 PRK04778 septation ring format 85.9 23 0.00051 36.3 14.2 32 127-158 347-378 (569)
79 COG1579 Zn-ribbon protein, pos 85.8 32 0.00069 32.7 13.9 156 111-285 28-185 (239)
80 PRK04863 mukB cell division pr 85.8 31 0.00066 40.1 16.2 30 103-132 285-314 (1486)
81 cd07623 BAR_SNX1_2 The Bin/Amp 85.8 27 0.00058 31.7 13.1 56 163-220 123-178 (224)
82 PF09325 Vps5: Vps5 C terminal 85.7 24 0.00051 30.9 13.7 61 161-221 133-193 (236)
83 KOG0933 Structural maintenance 85.7 54 0.0012 37.3 17.4 117 102-218 675-842 (1174)
84 KOG0976 Rho/Rac1-interacting s 85.7 32 0.0007 38.5 15.5 56 156-211 127-196 (1265)
85 TIGR03017 EpsF chain length de 85.6 27 0.00059 33.7 13.7 104 106-209 173-300 (444)
86 PF07200 Mod_r: Modifier of ru 85.4 21 0.00045 30.0 11.8 105 103-218 33-137 (150)
87 PRK10884 SH3 domain-containing 85.4 18 0.0004 33.1 11.9 66 104-176 100-166 (206)
88 KOG0995 Centromere-associated 85.4 35 0.00076 36.3 15.2 100 109-208 233-370 (581)
89 PF12795 MscS_porin: Mechanose 85.0 19 0.00041 32.7 11.8 87 129-215 79-174 (240)
90 PF12128 DUF3584: Protein of u 84.9 30 0.00065 38.7 15.4 102 108-212 604-706 (1201)
91 PF05667 DUF812: Protein of un 84.8 22 0.00048 37.5 13.6 34 101-134 325-358 (594)
92 KOG0980 Actin-binding protein 84.3 47 0.001 37.2 16.0 81 135-215 452-532 (980)
93 KOG4643 Uncharacterized coiled 84.2 22 0.00047 40.2 13.7 107 102-208 175-325 (1195)
94 PF04111 APG6: Autophagy prote 84.1 19 0.00041 34.6 11.9 25 195-219 110-134 (314)
95 TIGR01010 BexC_CtrB_KpsE polys 84.0 40 0.00086 32.1 14.2 59 104-162 170-234 (362)
96 KOG4673 Transcription factor T 83.9 33 0.00072 37.7 14.5 112 103-215 422-554 (961)
97 TIGR03185 DNA_S_dndD DNA sulfu 83.7 25 0.00053 36.5 13.3 74 102-176 396-469 (650)
98 PF04111 APG6: Autophagy prote 83.6 31 0.00068 33.2 13.1 94 101-197 40-133 (314)
99 PRK04863 mukB cell division pr 83.2 53 0.0012 38.3 16.7 47 102-151 277-330 (1486)
100 PF11932 DUF3450: Protein of u 83.0 37 0.00081 31.0 14.9 107 109-218 40-159 (251)
101 PF04849 HAP1_N: HAP1 N-termin 82.8 43 0.00094 33.0 13.8 115 104-218 104-254 (306)
102 PRK04778 septation ring format 82.6 38 0.00083 34.8 14.1 81 137-217 350-430 (569)
103 PF07106 TBPIP: Tat binding pr 82.3 16 0.00035 31.4 9.7 21 101-121 69-89 (169)
104 PF06810 Phage_GP20: Phage min 82.2 16 0.00035 31.9 9.8 114 102-223 18-134 (155)
105 TIGR03185 DNA_S_dndD DNA sulfu 81.8 55 0.0012 34.0 14.9 77 105-182 392-468 (650)
106 KOG0963 Transcription factor/C 81.8 43 0.00094 35.9 14.2 41 146-186 175-219 (629)
107 PF05266 DUF724: Protein of un 81.0 43 0.00094 30.4 12.5 76 143-218 111-186 (190)
108 KOG4438 Centromere-associated 81.0 53 0.0011 34.0 14.1 32 99-130 168-199 (446)
109 cd07627 BAR_Vps5p The Bin/Amph 80.9 42 0.0009 30.2 13.9 60 162-221 114-173 (216)
110 TIGR01010 BexC_CtrB_KpsE polys 80.8 48 0.0011 31.5 13.2 66 102-167 175-253 (362)
111 KOG0976 Rho/Rac1-interacting s 80.5 30 0.00066 38.7 12.9 21 109-129 53-73 (1265)
112 PF08537 NBP1: Fungal Nap bind 80.4 8.5 0.00018 38.1 8.1 77 102-182 121-218 (323)
113 PF14988 DUF4515: Domain of un 80.4 47 0.001 30.4 13.2 66 134-210 38-104 (206)
114 smart00787 Spc7 Spc7 kinetocho 80.2 60 0.0013 31.5 15.8 23 102-124 159-181 (312)
115 PF09730 BicD: Microtubule-ass 79.5 1E+02 0.0022 33.7 18.0 36 95-133 256-291 (717)
116 PF15456 Uds1: Up-regulated Du 79.4 30 0.00065 29.6 10.2 36 177-212 74-109 (124)
117 KOG4674 Uncharacterized conser 79.4 74 0.0016 38.1 16.2 110 102-216 1305-1426(1822)
118 PF14197 Cep57_CLD_2: Centroso 79.4 14 0.0003 28.7 7.5 49 105-153 6-65 (69)
119 TIGR01000 bacteriocin_acc bact 79.1 55 0.0012 32.4 13.4 21 195-215 288-308 (457)
120 PF03148 Tektin: Tektin family 78.8 31 0.00067 33.9 11.5 85 124-208 261-362 (384)
121 KOG0971 Microtubule-associated 78.7 80 0.0017 35.9 15.4 30 189-218 323-352 (1243)
122 PRK11519 tyrosine kinase; Prov 78.5 63 0.0014 34.2 14.3 49 105-153 268-322 (719)
123 PRK12704 phosphodiesterase; Pr 77.9 66 0.0014 33.3 14.0 44 165-208 91-134 (520)
124 PF13514 AAA_27: AAA domain 77.8 70 0.0015 35.4 14.9 55 105-159 151-212 (1111)
125 TIGR02231 conserved hypothetic 77.6 34 0.00073 34.5 11.6 37 98-134 65-101 (525)
126 KOG0994 Extracellular matrix g 77.5 15 0.00032 42.3 9.7 97 106-202 1196-1292(1758)
127 PF12072 DUF3552: Domain of un 77.3 54 0.0012 29.4 12.3 77 120-203 56-132 (201)
128 PF13870 DUF4201: Domain of un 77.3 48 0.001 28.7 15.9 116 103-218 41-172 (177)
129 PRK13729 conjugal transfer pil 77.2 8.2 0.00018 39.9 7.3 59 160-218 66-124 (475)
130 KOG3990 Uncharacterized conser 77.2 12 0.00026 36.5 8.0 51 77-129 200-250 (305)
131 KOG4674 Uncharacterized conser 77.1 95 0.002 37.3 16.1 112 103-214 653-782 (1822)
132 PF12128 DUF3584: Protein of u 77.0 77 0.0017 35.7 15.1 22 165-186 825-846 (1201)
133 KOG2010 Double stranded RNA bi 77.0 7.8 0.00017 38.9 6.8 162 108-282 144-336 (405)
134 PF05911 DUF869: Plant protein 76.9 63 0.0014 35.4 14.0 17 275-291 744-760 (769)
135 PF00769 ERM: Ezrin/radixin/mo 76.7 65 0.0014 30.0 14.4 39 170-208 82-120 (246)
136 PF06428 Sec2p: GDP/GTP exchan 76.5 5.3 0.00012 33.1 4.7 70 105-176 16-85 (100)
137 KOG3433 Protein involved in me 76.5 19 0.00041 33.6 8.7 71 151-221 76-146 (203)
138 PF05546 She9_MDM33: She9 / Md 76.4 22 0.00048 33.2 9.2 55 133-188 24-78 (207)
139 KOG4593 Mitotic checkpoint pro 76.4 1.2E+02 0.0027 33.1 16.7 65 135-209 133-197 (716)
140 PF05622 HOOK: HOOK protein; 76.4 0.82 1.8E-05 47.7 0.0 79 134-212 508-597 (713)
141 PF10481 CENP-F_N: Cenp-F N-te 75.8 66 0.0014 31.8 12.5 35 99-133 13-47 (307)
142 PRK09841 cryptic autophosphory 75.7 61 0.0013 34.3 13.3 48 106-153 269-322 (726)
143 KOG0996 Structural maintenance 75.6 1.1E+02 0.0024 35.4 15.7 48 172-219 544-591 (1293)
144 PF12777 MT: Microtubule-bindi 75.2 33 0.00072 33.0 10.4 98 108-208 218-315 (344)
145 PF04350 PilO: Pilus assembly 75.1 4.2 9.2E-05 32.9 3.8 64 107-170 2-68 (144)
146 COG3883 Uncharacterized protei 74.9 74 0.0016 30.8 12.5 87 85-171 125-212 (265)
147 KOG0963 Transcription factor/C 74.7 79 0.0017 34.1 13.7 68 138-205 192-263 (629)
148 COG2433 Uncharacterized conser 74.5 66 0.0014 34.7 13.1 86 105-204 423-508 (652)
149 KOG0243 Kinesin-like protein [ 74.5 1.3E+02 0.0028 34.2 15.8 93 102-195 453-557 (1041)
150 KOG0978 E3 ubiquitin ligase in 74.4 86 0.0019 34.1 14.1 114 86-199 482-609 (698)
151 PRK03947 prefoldin subunit alp 74.2 50 0.0011 27.5 10.2 45 174-218 91-135 (140)
152 PRK00106 hypothetical protein; 74.0 96 0.0021 32.6 14.0 45 165-209 106-150 (535)
153 KOG0240 Kinesin (SMY1 subfamil 73.7 39 0.00085 36.1 11.2 73 139-218 425-497 (607)
154 PF09726 Macoilin: Transmembra 73.7 1.4E+02 0.003 32.3 19.0 35 254-290 585-621 (697)
155 PF06810 Phage_GP20: Phage min 73.5 28 0.0006 30.5 8.7 70 131-207 16-85 (155)
156 TIGR00293 prefoldin, archaeal 73.4 29 0.00063 28.2 8.3 42 174-215 83-124 (126)
157 TIGR02680 conserved hypothetic 73.0 1.2E+02 0.0026 34.9 15.4 20 251-270 444-463 (1353)
158 PF06008 Laminin_I: Laminin Do 72.9 78 0.0017 29.1 12.1 92 107-219 20-115 (264)
159 TIGR03319 YmdA_YtgF conserved 72.0 1.2E+02 0.0025 31.5 14.0 46 164-209 84-129 (514)
160 PF05010 TACC: Transforming ac 71.8 85 0.0018 29.1 13.0 29 192-220 77-105 (207)
161 COG5185 HEC1 Protein involved 71.7 75 0.0016 33.7 12.5 117 102-218 342-507 (622)
162 KOG0977 Nuclear envelope prote 71.6 1.3E+02 0.0028 31.9 14.3 85 135-219 92-190 (546)
163 KOG0995 Centromere-associated 71.3 1.5E+02 0.0033 31.8 15.6 54 103-156 307-367 (581)
164 PF12329 TMF_DNA_bd: TATA elem 71.3 47 0.001 25.9 9.2 65 147-214 3-70 (74)
165 COG4026 Uncharacterized protei 71.2 40 0.00086 32.7 9.7 44 108-151 132-179 (290)
166 PF04102 SlyX: SlyX; InterPro 70.4 19 0.00041 27.5 6.1 48 164-218 5-52 (69)
167 TIGR02680 conserved hypothetic 70.1 1.2E+02 0.0026 34.8 14.7 41 135-175 269-309 (1353)
168 TIGR01000 bacteriocin_acc bact 70.1 1.2E+02 0.0026 30.1 14.5 27 192-218 237-263 (457)
169 KOG4643 Uncharacterized coiled 70.0 1.4E+02 0.0031 34.2 14.8 114 105-218 426-557 (1195)
170 PF15619 Lebercilin: Ciliary p 69.9 88 0.0019 28.5 12.3 114 102-218 66-184 (194)
171 PF06785 UPF0242: Uncharacteri 69.8 1.3E+02 0.0029 30.6 14.8 82 134-218 140-221 (401)
172 TIGR03319 YmdA_YtgF conserved 69.4 1.4E+02 0.003 30.9 13.9 56 148-203 75-130 (514)
173 PRK11281 hypothetical protein; 69.4 1.3E+02 0.0029 34.3 14.6 81 135-215 128-216 (1113)
174 KOG4657 Uncharacterized conser 69.4 1.1E+02 0.0024 29.5 13.0 91 130-221 17-109 (246)
175 KOG4809 Rab6 GTPase-interactin 69.0 41 0.0009 36.0 10.1 37 125-161 328-364 (654)
176 KOG0240 Kinesin (SMY1 subfamil 68.6 1E+02 0.0022 33.1 12.8 84 104-197 414-497 (607)
177 PRK02119 hypothetical protein; 68.3 51 0.0011 25.7 8.2 42 193-236 32-73 (73)
178 PF07111 HCR: Alpha helical co 67.8 1.6E+02 0.0034 32.5 14.2 56 96-154 154-209 (739)
179 PRK10361 DNA recombination pro 67.5 1.6E+02 0.0035 30.6 16.8 85 131-215 77-182 (475)
180 PF00846 Hanta_nucleocap: Hant 67.2 18 0.0004 36.9 7.0 67 112-178 3-71 (428)
181 PRK04406 hypothetical protein; 66.9 61 0.0013 25.5 8.7 42 193-236 34-75 (75)
182 cd00176 SPEC Spectrin repeats, 66.3 70 0.0015 26.0 14.9 116 102-218 31-166 (213)
183 cd07596 BAR_SNX The Bin/Amphip 66.3 81 0.0017 26.7 12.6 60 161-220 115-174 (218)
184 KOG0979 Structural maintenance 66.2 1.7E+02 0.0037 33.5 14.4 86 123-208 257-342 (1072)
185 PF05384 DegS: Sensor protein 65.7 1E+02 0.0022 27.6 16.1 112 99-210 22-152 (159)
186 PRK11578 macrolide transporter 65.5 98 0.0021 29.4 11.2 48 139-186 117-167 (370)
187 PF05529 Bap31: B-cell recepto 65.5 40 0.00087 29.5 8.0 59 105-165 126-184 (192)
188 COG1340 Uncharacterized archae 65.1 1.5E+02 0.0032 29.3 16.6 108 104-218 138-248 (294)
189 PF12777 MT: Microtubule-bindi 65.1 32 0.00069 33.1 7.9 81 138-218 210-290 (344)
190 PF14282 FlxA: FlxA-like prote 65.1 36 0.00079 27.9 7.2 52 103-155 18-71 (106)
191 PF06008 Laminin_I: Laminin Do 64.9 1.2E+02 0.0025 28.0 14.5 78 115-192 124-214 (264)
192 PRK00295 hypothetical protein; 64.3 64 0.0014 24.8 8.0 47 165-218 7-53 (68)
193 PRK00736 hypothetical protein; 64.0 61 0.0013 24.9 7.8 63 164-236 6-68 (68)
194 PRK02793 phi X174 lysis protei 63.6 68 0.0015 24.9 8.2 45 190-236 28-72 (72)
195 COG3937 Uncharacterized conser 63.2 33 0.00072 29.3 6.8 19 135-153 83-101 (108)
196 PF01576 Myosin_tail_1: Myosin 63.1 2.4 5.2E-05 45.8 0.0 81 134-214 552-632 (859)
197 COG5185 HEC1 Protein involved 63.1 2.2E+02 0.0047 30.5 14.7 67 142-208 330-406 (622)
198 PF04728 LPP: Lipoprotein leuc 62.9 19 0.0004 27.5 4.7 34 177-210 3-36 (56)
199 smart00338 BRLZ basic region l 62.8 28 0.00061 25.6 5.7 40 175-214 24-63 (65)
200 PF05529 Bap31: B-cell recepto 62.8 85 0.0018 27.5 9.5 70 129-218 119-188 (192)
201 PRK11281 hypothetical protein; 62.5 1.5E+02 0.0033 33.8 13.5 92 124-216 83-181 (1113)
202 PF05667 DUF812: Protein of un 61.7 2.2E+02 0.0048 30.2 14.0 57 107-166 324-380 (594)
203 PF13166 AAA_13: AAA domain 61.7 2E+02 0.0043 29.7 16.2 20 105-124 330-349 (712)
204 PF07106 TBPIP: Tat binding pr 61.6 69 0.0015 27.6 8.6 29 105-133 80-108 (169)
205 COG4487 Uncharacterized protei 61.4 2.1E+02 0.0045 29.8 14.5 146 102-268 33-180 (438)
206 PF05622 HOOK: HOOK protein; 61.2 2.7 5.9E-05 43.9 0.0 110 109-218 313-425 (713)
207 PF04582 Reo_sigmaC: Reovirus 61.1 18 0.00039 35.8 5.5 118 103-223 34-158 (326)
208 COG3206 GumC Uncharacterized p 61.0 1.5E+02 0.0033 29.3 12.0 78 134-215 312-390 (458)
209 PRK12704 phosphodiesterase; Pr 60.9 2.1E+02 0.0046 29.7 16.1 58 148-205 81-138 (520)
210 PF01576 Myosin_tail_1: Myosin 60.8 2.8 6.1E-05 45.3 0.0 117 99-218 126-249 (859)
211 PF01920 Prefoldin_2: Prefoldi 60.5 76 0.0017 24.4 8.8 31 103-133 11-41 (106)
212 PRK00106 hypothetical protein; 60.3 2.3E+02 0.0049 29.9 14.0 58 150-207 98-155 (535)
213 TIGR03794 NHPM_micro_HlyD NHPM 60.2 1.7E+02 0.0037 28.4 13.4 60 102-161 101-165 (421)
214 PF05335 DUF745: Protein of un 59.9 1.4E+02 0.003 27.3 12.3 53 162-214 115-167 (188)
215 PRK11546 zraP zinc resistance 59.8 32 0.00069 30.4 6.3 49 108-156 58-110 (143)
216 COG0216 PrfA Protein chain rel 59.5 1.3E+02 0.0029 30.5 11.2 93 105-203 8-102 (363)
217 PF02996 Prefoldin: Prefoldin 59.4 52 0.0011 26.1 7.1 63 105-167 4-116 (120)
218 cd00890 Prefoldin Prefoldin is 58.6 93 0.002 24.8 10.3 43 175-217 85-127 (129)
219 PF03962 Mnd1: Mnd1 family; I 58.5 82 0.0018 28.3 8.9 15 191-205 135-149 (188)
220 PF07798 DUF1640: Protein of u 58.0 1.3E+02 0.0028 26.4 11.4 20 134-153 79-98 (177)
221 PF04880 NUDE_C: NUDE protein, 58.0 19 0.00041 32.4 4.7 44 129-172 1-47 (166)
222 PF03915 AIP3: Actin interacti 57.7 2.3E+02 0.0049 29.1 13.5 81 102-182 174-272 (424)
223 PF05911 DUF869: Plant protein 57.6 2.4E+02 0.0052 31.1 13.6 82 135-216 596-691 (769)
224 PF11594 Med28: Mediator compl 56.8 41 0.0009 28.6 6.3 20 108-127 39-58 (106)
225 KOG1853 LIS1-interacting prote 56.8 64 0.0014 31.9 8.3 61 103-163 97-168 (333)
226 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.6 1.2E+02 0.0026 25.4 15.2 64 144-207 61-128 (132)
227 KOG0979 Structural maintenance 56.3 3.6E+02 0.0079 31.0 19.2 172 103-279 180-397 (1072)
228 PF14932 HAUS-augmin3: HAUS au 56.1 1.7E+02 0.0038 27.2 12.5 24 195-218 132-155 (256)
229 PRK10929 putative mechanosensi 56.0 2.8E+02 0.0061 31.8 14.1 49 134-184 200-248 (1109)
230 PF15066 CAGE1: Cancer-associa 55.9 2.2E+02 0.0047 30.2 12.3 67 133-199 360-433 (527)
231 PF11559 ADIP: Afadin- and alp 55.8 1.2E+02 0.0027 25.4 13.0 96 117-212 48-147 (151)
232 PF07926 TPR_MLP1_2: TPR/MLP1/ 55.4 1.2E+02 0.0027 25.3 11.1 20 196-215 64-83 (132)
233 KOG0946 ER-Golgi vesicle-tethe 55.1 3E+02 0.0064 31.2 13.7 72 146-218 755-833 (970)
234 KOG1962 B-cell receptor-associ 55.0 1.5E+02 0.0032 28.1 10.1 28 181-208 162-189 (216)
235 PRK04325 hypothetical protein; 54.7 1E+02 0.0022 24.1 8.3 27 138-164 5-31 (74)
236 COG4942 Membrane-bound metallo 54.7 1.1E+02 0.0024 31.4 10.0 23 161-183 85-107 (420)
237 KOG0962 DNA repair protein RAD 54.6 3.3E+02 0.0071 32.0 14.4 109 102-211 235-352 (1294)
238 PF10473 CENP-F_leu_zip: Leuci 54.4 1.5E+02 0.0033 26.0 16.2 72 105-176 18-93 (140)
239 PF09726 Macoilin: Transmembra 54.4 2.5E+02 0.0054 30.4 12.9 29 106-134 547-575 (697)
240 PF04859 DUF641: Plant protein 54.3 45 0.00098 29.0 6.3 36 183-218 86-121 (131)
241 PF05557 MAD: Mitotic checkpoi 54.2 4.2 9.1E-05 42.6 0.0 54 105-161 165-218 (722)
242 KOG0018 Structural maintenance 53.9 1.6E+02 0.0034 33.9 11.7 104 103-210 233-336 (1141)
243 TIGR02338 gimC_beta prefoldin, 53.9 1.2E+02 0.0026 24.7 9.9 31 179-209 76-106 (110)
244 COG0172 SerS Seryl-tRNA synthe 53.6 1.9E+02 0.004 29.8 11.4 105 105-219 3-110 (429)
245 PF02050 FliJ: Flagellar FliJ 53.5 95 0.0021 23.4 12.0 14 136-149 46-59 (123)
246 COG4372 Uncharacterized protei 53.2 2.9E+02 0.0063 28.9 14.7 48 164-211 131-178 (499)
247 KOG0804 Cytoplasmic Zn-finger 53.1 3E+02 0.0065 29.0 13.1 19 135-153 382-400 (493)
248 PF02403 Seryl_tRNA_N: Seryl-t 53.0 60 0.0013 25.8 6.4 17 132-148 47-63 (108)
249 PF11932 DUF3450: Protein of u 52.8 1.9E+02 0.004 26.5 13.9 13 105-117 25-37 (251)
250 PF12718 Tropomyosin_1: Tropom 52.7 1.5E+02 0.0033 25.6 15.7 50 107-156 17-70 (143)
251 PF11336 DUF3138: Protein of u 52.6 21 0.00044 37.2 4.5 28 188-215 80-107 (514)
252 KOG0804 Cytoplasmic Zn-finger 52.6 3.1E+02 0.0066 29.0 13.9 44 111-154 347-390 (493)
253 cd00584 Prefoldin_alpha Prefol 52.5 1.3E+02 0.0028 24.6 9.8 31 103-133 12-42 (129)
254 PF06005 DUF904: Protein of un 52.3 1.1E+02 0.0025 23.9 7.9 47 104-150 18-68 (72)
255 KOG0964 Structural maintenance 51.9 2.3E+02 0.005 32.6 12.5 82 102-183 676-761 (1200)
256 PF05531 NPV_P10: Nucleopolyhe 51.8 80 0.0017 25.4 6.8 53 103-162 10-62 (75)
257 cd00632 Prefoldin_beta Prefold 51.6 1.2E+02 0.0027 24.2 9.9 29 105-133 14-42 (105)
258 KOG4360 Uncharacterized coiled 51.6 90 0.0019 33.3 8.9 54 131-184 236-292 (596)
259 PF11559 ADIP: Afadin- and alp 51.5 1.5E+02 0.0032 25.0 13.0 68 133-200 71-149 (151)
260 PF05483 SCP-1: Synaptonemal c 51.4 3.8E+02 0.0083 29.8 15.4 70 135-204 233-302 (786)
261 PF09766 FimP: Fms-interacting 51.2 2.4E+02 0.0053 27.6 11.5 38 171-208 85-125 (355)
262 smart00502 BBC B-Box C-termina 51.2 1.1E+02 0.0024 23.5 14.7 98 108-218 4-102 (127)
263 PRK15178 Vi polysaccharide exp 51.1 2.5E+02 0.0054 28.9 11.8 116 102-218 240-378 (434)
264 PF12761 End3: Actin cytoskele 51.0 81 0.0018 29.3 7.7 87 105-215 97-184 (195)
265 PF02050 FliJ: Flagellar FliJ 50.5 1.1E+02 0.0023 23.1 12.8 40 135-174 52-91 (123)
266 PF07851 TMPIT: TMPIT-like pro 50.2 1.6E+02 0.0034 29.4 10.0 85 127-211 3-88 (330)
267 PRK06975 bifunctional uroporph 49.0 1.2E+02 0.0027 32.0 9.6 29 190-218 384-412 (656)
268 COG0419 SbcC ATPase involved i 49.0 3.9E+02 0.0084 29.1 16.7 77 140-216 366-442 (908)
269 PF15070 GOLGA2L5: Putative go 48.5 3.7E+02 0.008 28.8 14.1 46 108-153 126-171 (617)
270 KOG4552 Vitamin-D-receptor int 48.3 1E+02 0.0023 29.6 8.1 55 120-174 52-106 (272)
271 KOG0964 Structural maintenance 47.9 5E+02 0.011 30.1 15.1 15 201-215 788-802 (1200)
272 PF14817 HAUS5: HAUS augmin-li 47.9 2.2E+02 0.0048 30.6 11.3 108 102-216 363-472 (632)
273 cd07625 BAR_Vps17p The Bin/Amp 47.7 39 0.00084 31.7 5.2 58 163-220 129-186 (230)
274 PF12761 End3: Actin cytoskele 47.5 1E+02 0.0023 28.6 7.9 21 102-122 101-121 (195)
275 TIGR02231 conserved hypothetic 47.5 2.2E+02 0.0049 28.7 10.9 8 112-119 72-79 (525)
276 PF04508 Pox_A_type_inc: Viral 47.3 20 0.00042 23.1 2.2 18 105-122 2-19 (23)
277 KOG0244 Kinesin-like protein [ 47.2 2E+02 0.0044 32.4 11.1 97 102-198 465-601 (913)
278 KOG4302 Microtubule-associated 47.2 2.8E+02 0.006 30.2 11.9 73 103-175 67-143 (660)
279 PF05557 MAD: Mitotic checkpoi 47.1 6.3 0.00014 41.3 0.0 75 104-181 128-210 (722)
280 PF06103 DUF948: Bacterial pro 47.0 1.3E+02 0.0029 23.2 7.6 57 165-221 28-84 (90)
281 PF03961 DUF342: Protein of un 46.9 1.6E+02 0.0034 29.3 9.6 31 102-132 332-362 (451)
282 KOG4593 Mitotic checkpoint pro 46.6 4.4E+02 0.0096 29.1 15.1 21 111-131 200-220 (716)
283 COG4026 Uncharacterized protei 46.0 2.1E+02 0.0046 27.9 9.8 12 148-159 145-156 (290)
284 PF11315 Med30: Mediator compl 46.0 1E+02 0.0022 27.5 7.3 79 186-264 40-119 (150)
285 PF03962 Mnd1: Mnd1 family; I 45.8 2.3E+02 0.0049 25.5 10.5 100 95-204 60-162 (188)
286 PF13514 AAA_27: AAA domain 45.7 4.8E+02 0.01 29.2 15.0 37 182-218 894-930 (1111)
287 PRK10803 tol-pal system protei 45.7 42 0.0009 31.4 5.1 11 257-267 142-152 (263)
288 PF10473 CENP-F_leu_zip: Leuci 45.2 2.2E+02 0.0047 25.1 15.0 104 112-215 8-111 (140)
289 PF14817 HAUS5: HAUS augmin-li 45.1 3.6E+02 0.0077 29.1 12.3 48 122-169 80-127 (632)
290 PF09787 Golgin_A5: Golgin sub 45.1 3.6E+02 0.0078 27.6 14.2 29 135-163 228-260 (511)
291 PF03999 MAP65_ASE1: Microtubu 44.8 7.2 0.00016 40.4 0.0 86 133-218 82-169 (619)
292 PF07111 HCR: Alpha helical co 44.5 4.8E+02 0.01 28.9 14.4 99 103-201 477-581 (739)
293 PF06120 Phage_HK97_TLTM: Tail 44.5 3.2E+02 0.007 26.9 13.0 112 103-219 47-169 (301)
294 PF07200 Mod_r: Modifier of ru 44.4 1.9E+02 0.0041 24.2 11.7 51 116-166 29-79 (150)
295 PRK11546 zraP zinc resistance 44.4 1.1E+02 0.0023 27.2 7.1 53 163-215 61-113 (143)
296 PF10481 CENP-F_N: Cenp-F N-te 44.3 2.5E+02 0.0054 27.9 10.2 74 135-208 18-112 (307)
297 KOG0517 Beta-spectrin [Cytoske 44.3 1.8E+02 0.0039 35.7 10.6 96 103-207 1347-1445(2473)
298 TIGR01730 RND_mfp RND family e 44.2 1.2E+02 0.0027 27.1 7.8 16 165-180 104-119 (322)
299 PF02388 FemAB: FemAB family; 44.2 96 0.0021 30.6 7.6 57 155-215 241-297 (406)
300 KOG1029 Endocytic adaptor prot 44.1 5.4E+02 0.012 29.4 14.6 14 56-69 296-309 (1118)
301 KOG0978 E3 ubiquitin ligase in 42.7 5E+02 0.011 28.6 15.5 31 181-211 486-516 (698)
302 KOG0994 Extracellular matrix g 42.4 6.7E+02 0.015 30.0 15.4 31 128-158 1647-1677(1758)
303 PF04728 LPP: Lipoprotein leuc 42.2 1.6E+02 0.0034 22.6 6.9 36 130-165 5-40 (56)
304 TIGR03545 conserved hypothetic 42.2 1.3E+02 0.0028 31.6 8.5 48 101-149 155-205 (555)
305 KOG4809 Rab6 GTPase-interactin 41.9 4.9E+02 0.011 28.3 13.7 57 102-161 336-392 (654)
306 PRK00846 hypothetical protein; 41.7 1.8E+02 0.004 23.3 8.3 40 195-236 38-77 (77)
307 COG1340 Uncharacterized archae 41.5 3.6E+02 0.0078 26.6 16.3 52 102-153 156-211 (294)
308 PF09789 DUF2353: Uncharacteri 41.4 3.7E+02 0.008 26.7 12.5 112 95-218 70-181 (319)
309 TIGR03495 phage_LysB phage lys 41.3 2.5E+02 0.0054 24.7 10.1 71 134-204 25-95 (135)
310 PF08172 CASP_C: CASP C termin 41.2 1.3E+02 0.0028 28.5 7.6 32 179-210 95-126 (248)
311 PF05103 DivIVA: DivIVA protei 41.1 13 0.00027 30.1 0.9 24 191-214 107-130 (131)
312 KOG4787 Uncharacterized conser 41.0 3E+02 0.0065 30.3 10.9 105 110-215 412-539 (852)
313 KOG1937 Uncharacterized conser 41.0 4.7E+02 0.01 27.8 12.5 104 107-218 265-372 (521)
314 KOG4673 Transcription factor T 40.8 5.7E+02 0.012 28.8 13.8 40 99-138 490-529 (961)
315 PF11180 DUF2968: Protein of u 40.7 73 0.0016 29.6 5.8 39 165-203 100-138 (192)
316 PRK03947 prefoldin subunit alp 40.5 2.1E+02 0.0047 23.7 10.0 44 104-147 6-49 (140)
317 PF12325 TMF_TATA_bd: TATA ele 40.3 2.4E+02 0.0051 24.1 10.0 86 113-205 18-110 (120)
318 PF14257 DUF4349: Domain of un 40.3 1.5E+02 0.0032 27.2 7.7 18 135-152 162-179 (262)
319 PF15112 DUF4559: Domain of un 40.1 3.1E+02 0.0068 27.3 10.2 108 102-213 181-303 (307)
320 PRK13169 DNA replication intia 39.5 60 0.0013 27.5 4.7 32 122-153 2-33 (110)
321 PF09787 Golgin_A5: Golgin sub 39.5 4.4E+02 0.0095 27.0 14.1 117 102-218 286-426 (511)
322 PF00170 bZIP_1: bZIP transcri 39.4 1.3E+02 0.0029 22.0 6.0 37 175-211 24-60 (64)
323 PF03961 DUF342: Protein of un 39.3 2.1E+02 0.0046 28.4 9.2 35 174-208 372-406 (451)
324 TIGR00293 prefoldin, archaeal 38.9 2.1E+02 0.0046 23.2 9.9 44 107-158 9-52 (126)
325 PF10805 DUF2730: Protein of u 38.7 2.2E+02 0.0048 23.3 8.1 56 110-165 34-95 (106)
326 KOG3809 Microtubule-binding pr 38.5 2.7E+02 0.0059 29.5 9.9 37 180-216 528-564 (583)
327 KOG0239 Kinesin (KAR3 subfamil 38.4 5.5E+02 0.012 27.8 12.8 74 135-208 241-317 (670)
328 PRK10476 multidrug resistance 38.1 3.5E+02 0.0076 25.5 12.4 80 105-187 94-176 (346)
329 PF14257 DUF4349: Domain of un 37.8 1.2E+02 0.0026 27.7 6.8 61 158-219 127-190 (262)
330 PRK10636 putative ABC transpor 37.7 1.4E+02 0.0031 31.0 8.0 23 133-155 568-590 (638)
331 KOG1003 Actin filament-coating 37.4 3.6E+02 0.0079 25.5 15.7 107 105-218 26-136 (205)
332 PRK05431 seryl-tRNA synthetase 37.2 1.7E+02 0.0037 29.3 8.2 16 131-146 45-60 (425)
333 PRK10476 multidrug resistance 36.9 3.7E+02 0.0079 25.4 14.6 17 105-121 87-103 (346)
334 PF11819 DUF3338: Domain of un 36.9 1.1E+02 0.0023 27.2 6.0 49 86-134 10-62 (138)
335 PF13815 Dzip-like_N: Iguana/D 36.8 1.5E+02 0.0033 24.4 6.6 46 120-165 72-117 (118)
336 PRK03598 putative efflux pump 36.5 3.6E+02 0.0078 25.2 10.5 82 134-215 113-202 (331)
337 PF06156 DUF972: Protein of un 36.4 74 0.0016 26.6 4.7 32 122-153 2-33 (107)
338 PRK04325 hypothetical protein; 36.4 1.7E+02 0.0037 22.8 6.5 26 193-218 32-57 (74)
339 PF06248 Zw10: Centromere/kine 36.3 4.7E+02 0.01 27.0 11.3 29 134-162 75-103 (593)
340 KOG3595 Dyneins, heavy chain [ 35.9 2.4E+02 0.0051 32.7 9.9 84 135-218 920-1003(1395)
341 PF14988 DUF4515: Domain of un 35.7 3.5E+02 0.0076 24.8 15.6 79 100-181 35-121 (206)
342 PF11570 E2R135: Coiled-coil r 35.6 3.2E+02 0.007 24.4 11.5 42 102-146 13-54 (136)
343 PRK02119 hypothetical protein; 35.6 1.7E+02 0.0037 22.8 6.3 26 142-167 9-34 (73)
344 KOG0612 Rho-associated, coiled 35.6 8.1E+02 0.018 29.0 13.9 30 103-132 622-651 (1317)
345 KOG1962 B-cell receptor-associ 35.5 3.3E+02 0.0072 25.8 9.3 36 180-215 175-210 (216)
346 PF02388 FemAB: FemAB family; 35.1 1.8E+02 0.0039 28.7 7.9 49 105-153 243-291 (406)
347 PF12072 DUF3552: Domain of un 34.9 3.4E+02 0.0073 24.4 13.1 64 149-212 71-134 (201)
348 COG1730 GIM5 Predicted prefold 34.4 2.4E+02 0.0053 24.9 7.8 43 176-218 93-135 (145)
349 TIGR02132 phaR_Bmeg polyhydrox 34.2 4E+02 0.0086 25.0 11.4 82 106-187 81-182 (189)
350 cd00584 Prefoldin_alpha Prefol 34.2 1.3E+02 0.0028 24.6 5.7 39 178-216 88-126 (129)
351 PRK14143 heat shock protein Gr 34.2 2.1E+02 0.0047 27.0 7.9 55 102-166 65-120 (238)
352 PF12240 Angiomotin_C: Angiomo 34.1 3.7E+02 0.008 25.4 9.3 38 181-218 126-166 (205)
353 KOG0612 Rho-associated, coiled 33.9 5.1E+02 0.011 30.5 11.8 28 161-188 492-519 (1317)
354 PRK14153 heat shock protein Gr 33.9 1.9E+02 0.0042 26.6 7.4 52 105-166 34-86 (194)
355 TIGR00998 8a0101 efflux pump m 33.3 3.9E+02 0.0084 24.6 13.5 55 130-184 110-167 (334)
356 PF04420 CHD5: CHD5-like prote 33.2 1.6E+02 0.0035 25.7 6.5 19 134-152 39-57 (161)
357 COG4942 Membrane-bound metallo 33.1 5.7E+02 0.012 26.5 14.7 68 144-211 173-244 (420)
358 PF05278 PEARLI-4: Arabidopsis 33.0 4.8E+02 0.01 25.5 12.7 18 117-134 148-165 (269)
359 PF05278 PEARLI-4: Arabidopsis 32.7 4.8E+02 0.01 25.5 13.1 102 105-209 127-239 (269)
360 PRK10246 exonuclease subunit S 32.6 7.5E+02 0.016 27.7 18.6 24 246-269 774-797 (1047)
361 PRK14161 heat shock protein Gr 32.6 2.2E+02 0.0048 25.7 7.4 29 105-133 20-49 (178)
362 PF10234 Cluap1: Clusterin-ass 32.5 4.7E+02 0.01 25.4 10.5 11 121-131 140-150 (267)
363 KOG0018 Structural maintenance 32.5 5E+02 0.011 30.2 11.4 78 131-215 810-887 (1141)
364 KOG2391 Vacuolar sorting prote 32.4 5.6E+02 0.012 26.2 12.4 27 18-44 128-156 (365)
365 PF11853 DUF3373: Protein of u 32.4 44 0.00096 34.8 3.3 15 105-120 26-40 (489)
366 KOG4302 Microtubule-associated 32.3 2.5E+02 0.0055 30.5 8.9 96 103-215 102-198 (660)
367 PRK00373 V-type ATP synthase s 32.3 84 0.0018 28.2 4.7 34 165-198 138-171 (204)
368 PF12862 Apc5: Anaphase-promot 32.2 68 0.0015 24.9 3.7 33 251-283 54-86 (94)
369 PF05377 FlaC_arch: Flagella a 32.2 55 0.0012 24.9 3.0 19 200-218 16-34 (55)
370 PF02403 Seryl_tRNA_N: Seryl-t 32.0 2.6E+02 0.0056 22.1 9.3 96 107-213 5-103 (108)
371 TIGR00634 recN DNA repair prot 32.0 5.8E+02 0.013 26.2 15.6 20 144-163 214-233 (563)
372 PF05483 SCP-1: Synaptonemal c 32.0 7.6E+02 0.017 27.6 14.7 56 112-167 406-461 (786)
373 TIGR00309 V_ATPase_subD H(+)-t 31.9 90 0.0019 28.2 4.9 35 164-198 137-171 (209)
374 KOG1760 Molecular chaperone Pr 31.9 1.6E+02 0.0036 26.0 6.2 36 117-152 83-119 (131)
375 PF09486 HrpB7: Bacterial type 31.5 3.8E+02 0.0083 24.0 14.9 114 105-218 16-141 (158)
376 PF14662 CCDC155: Coiled-coil 31.4 4.4E+02 0.0096 24.7 11.8 22 159-180 133-154 (193)
377 PHA01750 hypothetical protein 31.4 1.3E+02 0.0028 24.2 5.0 26 95-120 33-58 (75)
378 PRK14163 heat shock protein Gr 31.3 4.5E+02 0.0097 24.7 9.4 30 105-134 41-71 (214)
379 TIGR02971 heterocyst_DevB ABC 31.3 4.3E+02 0.0092 24.5 14.1 55 130-184 99-156 (327)
380 PF12325 TMF_TATA_bd: TATA ele 31.1 3.4E+02 0.0073 23.2 9.1 72 105-186 31-105 (120)
381 PF05852 DUF848: Gammaherpesvi 31.0 2.2E+02 0.0048 25.4 7.0 84 149-243 54-144 (146)
382 TIGR02971 heterocyst_DevB ABC 31.0 4.3E+02 0.0094 24.4 10.3 30 111-140 97-126 (327)
383 TIGR03752 conj_TIGR03752 integ 31.0 6.5E+02 0.014 26.5 11.8 89 102-220 57-145 (472)
384 PRK15396 murein lipoprotein; P 30.8 2.7E+02 0.0058 22.4 6.8 17 134-150 31-47 (78)
385 COG0419 SbcC ATPase involved i 30.7 7.4E+02 0.016 27.0 16.7 38 178-215 390-427 (908)
386 PF04859 DUF641: Plant protein 30.5 1.4E+02 0.0031 26.0 5.7 42 162-203 79-120 (131)
387 PLN02678 seryl-tRNA synthetase 30.3 2.5E+02 0.0055 28.8 8.2 21 127-147 46-66 (448)
388 KOG4360 Uncharacterized coiled 30.2 4.9E+02 0.011 28.1 10.3 18 102-119 171-188 (596)
389 PF07246 Phlebovirus_NSM: Phle 30.2 5.3E+02 0.012 25.2 10.6 44 174-217 206-249 (264)
390 PF05791 Bacillus_HBL: Bacillu 30.2 3.9E+02 0.0085 23.7 10.6 20 188-207 160-179 (184)
391 PF05266 DUF724: Protein of un 30.1 4.3E+02 0.0092 24.1 12.9 15 193-207 168-182 (190)
392 PRK09841 cryptic autophosphory 30.1 7E+02 0.015 26.6 13.5 63 103-165 273-348 (726)
393 KOG1937 Uncharacterized conser 30.0 7E+02 0.015 26.6 13.3 38 171-208 287-324 (521)
394 PRK14140 heat shock protein Gr 30.0 2.9E+02 0.0063 25.4 7.8 33 102-134 35-68 (191)
395 PF10498 IFT57: Intra-flagella 29.8 2.6E+02 0.0056 27.9 8.0 43 161-203 278-320 (359)
396 PRK10869 recombination and rep 29.7 6.6E+02 0.014 26.1 15.0 16 274-289 320-335 (553)
397 PRK01203 prefoldin subunit alp 29.5 1.5E+02 0.0034 25.8 5.7 53 86-138 68-121 (130)
398 KOG1029 Endocytic adaptor prot 29.4 9.1E+02 0.02 27.7 12.9 110 95-205 352-465 (1118)
399 PRK10361 DNA recombination pro 29.4 6.8E+02 0.015 26.2 16.6 62 115-183 47-108 (475)
400 PLN02939 transferase, transfer 29.2 5E+02 0.011 29.6 10.8 105 99-221 140-256 (977)
401 TIGR03794 NHPM_micro_HlyD NHPM 29.1 5.5E+02 0.012 25.0 14.7 23 192-214 228-250 (421)
402 KOG4807 F-actin binding protei 28.5 7.3E+02 0.016 26.3 12.1 90 98-190 292-406 (593)
403 PF04420 CHD5: CHD5-like prote 28.4 3.3E+02 0.0072 23.8 7.6 52 100-152 36-90 (161)
404 PF06248 Zw10: Centromere/kine 28.4 5.5E+02 0.012 26.5 10.3 102 104-218 76-178 (593)
405 PRK11519 tyrosine kinase; Prov 28.3 7.5E+02 0.016 26.3 14.0 62 103-164 273-347 (719)
406 PRK14139 heat shock protein Gr 28.2 3.1E+02 0.0067 25.1 7.6 43 105-147 33-76 (185)
407 TIGR00823 EIIA-LAC phosphotran 28.0 1E+02 0.0022 25.4 4.1 33 256-288 16-48 (99)
408 COG3167 PilO Tfp pilus assembl 27.6 2.1E+02 0.0046 27.1 6.6 49 104-152 49-97 (211)
409 KOG4687 Uncharacterized coiled 27.6 6.5E+02 0.014 25.4 12.8 110 103-212 8-125 (389)
410 PRK00409 recombination and DNA 27.5 5.5E+02 0.012 28.0 10.5 81 102-188 514-595 (782)
411 PRK00295 hypothetical protein; 27.5 2.9E+02 0.0062 21.2 6.9 40 109-151 3-42 (68)
412 PF06428 Sec2p: GDP/GTP exchan 27.3 1E+02 0.0022 25.7 4.0 24 195-218 62-85 (100)
413 PRK14149 heat shock protein Gr 26.6 2.9E+02 0.0062 25.5 7.2 37 98-140 37-73 (191)
414 PF12210 Hrs_helical: Hepatocy 26.4 4E+02 0.0086 22.5 7.8 49 108-156 43-91 (96)
415 PF13863 DUF4200: Domain of un 26.3 3.4E+02 0.0075 21.8 11.7 85 134-218 31-118 (126)
416 KOG0998 Synaptic vesicle prote 26.3 2.3E+02 0.005 31.3 7.6 70 135-218 505-574 (847)
417 PF07889 DUF1664: Protein of u 26.3 4.3E+02 0.0094 22.9 12.1 28 191-218 89-116 (126)
418 PF14662 CCDC155: Coiled-coil 26.2 5.5E+02 0.012 24.1 14.3 34 182-215 93-126 (193)
419 PF15035 Rootletin: Ciliary ro 26.1 3.7E+02 0.0079 24.3 7.7 29 130-158 97-125 (182)
420 PF09006 Surfac_D-trimer: Lung 26.1 70 0.0015 23.8 2.5 14 107-120 2-15 (46)
421 PF09789 DUF2353: Uncharacteri 26.0 6.7E+02 0.014 25.0 13.4 79 128-210 72-159 (319)
422 KOG3859 Septins (P-loop GTPase 25.9 7.3E+02 0.016 25.4 11.4 54 95-154 321-378 (406)
423 cd00215 PTS_IIA_lac PTS_IIA, P 25.8 1.2E+02 0.0025 24.9 4.1 32 256-287 14-45 (97)
424 KOG2991 Splicing regulator [RN 25.7 6.8E+02 0.015 25.0 11.2 17 135-151 184-200 (330)
425 PF06785 UPF0242: Uncharacteri 25.7 6.5E+02 0.014 25.9 9.9 86 102-218 139-228 (401)
426 PLN03229 acetyl-coenzyme A car 25.6 4.7E+02 0.01 29.1 9.5 15 100-114 600-614 (762)
427 PRK11448 hsdR type I restricti 25.5 4.3E+02 0.0092 30.3 9.6 86 102-188 147-253 (1123)
428 PF13805 Pil1: Eisosome compon 25.5 6.4E+02 0.014 24.6 11.6 46 165-214 143-188 (271)
429 TIGR01730 RND_mfp RND family e 25.5 5E+02 0.011 23.3 9.0 8 110-117 70-77 (322)
430 TIGR00414 serS seryl-tRNA synt 25.4 3.6E+02 0.0078 27.0 8.2 16 131-146 47-62 (418)
431 KOG1899 LAR transmembrane tyro 25.3 9.9E+02 0.021 26.7 12.4 114 103-218 138-266 (861)
432 PRK14151 heat shock protein Gr 25.3 3E+02 0.0065 24.8 6.9 53 102-165 18-72 (176)
433 PF12795 MscS_porin: Mechanose 25.2 5.2E+02 0.011 23.5 12.2 89 128-218 45-133 (240)
434 KOG4677 Golgi integral membran 25.1 8.7E+02 0.019 26.0 11.9 79 137-217 261-349 (554)
435 PRK00409 recombination and DNA 25.0 9.3E+02 0.02 26.3 14.3 12 280-291 714-725 (782)
436 PRK10454 PTS system N,N'-diace 25.0 1.2E+02 0.0026 25.8 4.1 33 256-288 30-62 (115)
437 PF06160 EzrA: Septation ring 24.9 8E+02 0.017 25.5 14.0 28 127-154 343-370 (560)
438 PF09730 BicD: Microtubule-ass 24.7 9.7E+02 0.021 26.5 13.5 101 102-202 364-465 (717)
439 KOG1899 LAR transmembrane tyro 24.5 7.3E+02 0.016 27.7 10.5 21 146-166 242-262 (861)
440 PRK05431 seryl-tRNA synthetase 24.5 7.3E+02 0.016 24.9 10.8 99 109-218 7-107 (425)
441 PF12709 Kinetocho_Slk19: Cent 24.3 3.4E+02 0.0074 22.4 6.5 36 177-212 49-84 (87)
442 PF04065 Not3: Not1 N-terminal 24.3 2.1E+02 0.0046 27.0 6.1 59 189-248 161-221 (233)
443 PF01813 ATP-synt_D: ATP synth 24.2 1E+02 0.0022 27.3 3.7 35 164-198 128-162 (196)
444 PRK15178 Vi polysaccharide exp 24.2 6.7E+02 0.015 25.9 9.9 103 110-214 229-337 (434)
445 PRK09591 celC cellobiose phosp 24.2 1.3E+02 0.0027 25.1 4.0 32 256-287 19-50 (104)
446 PF11544 Spc42p: Spindle pole 24.1 3.9E+02 0.0085 21.7 6.7 26 109-134 3-28 (76)
447 PRK13182 racA polar chromosome 23.9 3.9E+02 0.0084 24.1 7.4 53 129-183 86-138 (175)
448 PLN02320 seryl-tRNA synthetase 23.8 7.1E+02 0.015 26.2 10.2 101 106-218 69-171 (502)
449 cd00890 Prefoldin Prefoldin is 23.6 3.8E+02 0.0082 21.3 9.7 25 179-203 103-127 (129)
450 PF15294 Leu_zip: Leucine zipp 23.4 7.1E+02 0.015 24.4 10.0 22 100-121 128-149 (278)
451 PF06305 DUF1049: Protein of u 23.2 97 0.0021 22.5 2.9 25 180-204 44-68 (68)
452 KOG3990 Uncharacterized conser 23.2 3.7E+02 0.0079 26.7 7.5 31 141-171 231-261 (305)
453 COG1382 GimC Prefoldin, chaper 23.2 5E+02 0.011 22.5 12.0 97 110-210 9-110 (119)
454 PRK10803 tol-pal system protei 23.0 5.3E+02 0.011 24.2 8.4 7 268-274 170-176 (263)
455 PF06160 EzrA: Septation ring 22.8 8.8E+02 0.019 25.2 14.1 50 166-215 375-424 (560)
456 PF14071 YlbD_coat: Putative c 22.8 2E+02 0.0043 25.1 5.1 34 192-225 78-111 (124)
457 PF02996 Prefoldin: Prefoldin 22.7 2.6E+02 0.0056 22.2 5.5 48 86-133 66-113 (120)
458 KOG4603 TBP-1 interacting prot 22.7 6.5E+02 0.014 23.7 11.5 59 134-197 85-143 (201)
459 KOG0946 ER-Golgi vesicle-tethe 22.6 1E+03 0.022 27.2 11.4 70 102-171 735-821 (970)
460 TIGR01554 major_cap_HK97 phage 22.6 4.9E+02 0.011 25.0 8.3 18 200-217 127-144 (378)
461 PF10205 KLRAQ: Predicted coil 22.5 4.8E+02 0.01 22.1 10.0 17 105-121 6-22 (102)
462 PF10498 IFT57: Intra-flagella 22.3 7.9E+02 0.017 24.5 12.7 82 131-215 237-318 (359)
463 PRK14147 heat shock protein Gr 22.1 3.8E+02 0.0083 24.0 7.0 35 105-145 26-60 (172)
464 COG1730 GIM5 Predicted prefold 22.0 5.6E+02 0.012 22.7 10.2 47 140-186 92-138 (145)
465 PF08651 DASH_Duo1: DASH compl 21.9 4.1E+02 0.0089 21.1 6.7 45 108-152 2-46 (78)
466 TIGR00999 8a0102 Membrane Fusi 21.8 2.3E+02 0.005 24.9 5.5 20 163-182 61-80 (265)
467 PF00435 Spectrin: Spectrin re 21.8 3.1E+02 0.0067 19.6 9.1 34 100-133 30-63 (105)
468 PF07278 DUF1441: Protein of u 21.7 2.7E+02 0.0058 25.0 5.8 42 113-154 82-145 (152)
469 PLN03229 acetyl-coenzyme A car 21.7 7.2E+02 0.016 27.7 10.0 26 141-166 603-629 (762)
470 PF10046 BLOC1_2: Biogenesis o 21.6 4.4E+02 0.0094 21.2 8.8 61 105-165 36-96 (99)
471 PF11488 Lge1: Transcriptional 21.5 4E+02 0.0087 20.8 6.6 31 102-132 28-58 (80)
472 PRK11147 ABC transporter ATPas 21.5 2.4E+02 0.0052 29.3 6.3 23 106-128 570-592 (635)
473 COG4467 Regulator of replicati 21.4 2E+02 0.0044 24.9 4.8 30 123-152 3-32 (114)
474 TIGR01280 xseB exodeoxyribonuc 21.4 3E+02 0.0066 21.1 5.4 51 124-174 4-54 (67)
475 PRK10920 putative uroporphyrin 21.3 6.4E+02 0.014 25.6 9.1 26 193-218 101-126 (390)
476 PRK14064 exodeoxyribonuclease 20.9 2.3E+02 0.005 22.3 4.8 50 124-173 9-58 (75)
477 PF13863 DUF4200: Domain of un 20.8 4.5E+02 0.0097 21.1 15.9 31 188-218 78-108 (126)
478 COG1345 FliD Flagellar capping 20.7 3.3E+02 0.0072 28.2 7.1 55 161-218 427-481 (483)
479 TIGR02209 ftsL_broad cell divi 20.5 3.5E+02 0.0076 20.3 5.6 38 184-221 31-70 (85)
480 KOG3335 Predicted coiled-coil 20.4 1.4E+02 0.003 27.7 3.9 19 100-118 102-120 (181)
481 PF02255 PTS_IIA: PTS system, 20.4 1.7E+02 0.0036 23.8 4.0 32 256-287 13-44 (96)
482 PF11593 Med3: Mediator comple 20.3 4.2E+02 0.0092 27.2 7.5 91 112-218 9-99 (379)
483 PF05335 DUF745: Protein of un 20.2 6.8E+02 0.015 23.0 15.3 24 136-159 110-133 (188)
484 PF04906 Tweety: Tweety; Inte 20.1 2.5E+02 0.0055 28.0 6.0 53 162-214 282-338 (406)
485 COG3599 DivIVA Cell division i 20.1 7.2E+02 0.016 23.2 13.2 90 195-294 120-209 (212)
No 1
>PRK11637 AmiB activator; Provisional
Probab=96.76 E-value=0.035 Score=53.96 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=32.9
Q ss_pred HHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 022306 158 IKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 211 (299)
Q Consensus 158 ikStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm 211 (299)
|..++.+|......+.+.+..|..++.++-..+..+..++.++...+..+...+
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666666666666666666666555443
No 2
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.39 E-value=0.34 Score=43.34 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDE-----LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ 176 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDe-----lLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq 176 (299)
-+.++..++++.+.|+.++.+.=+ ....+...+.++......+..|+..+.....-|...+..+.+.+..|..+.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777777777777666554 444444444444444444444444444444444444444444444444444
Q ss_pred HHH
Q 022306 177 AAL 179 (299)
Q Consensus 177 AaL 179 (299)
..|
T Consensus 105 ~~l 107 (302)
T PF10186_consen 105 SRL 107 (302)
T ss_pred HHH
Confidence 333
No 3
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.94 E-value=0.19 Score=53.82 Aligned_cols=111 Identities=24% Similarity=0.234 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 108 ALREQVEDLQRKMF----EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 108 ~LreQVeeLqkKL~----EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
.|+..|.-|+..+. ++|.+.+.++..........+++|.++.+|..|+.=|...|..|.++--...|++-=++.|.
T Consensus 249 ~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lk 328 (775)
T PF10174_consen 249 DLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLK 328 (775)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 37888888877654 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
-.+-......+.||.|++.+++++-.=..++.+-+
T Consensus 329 esl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 329 ESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988777777555
No 4
>PRK09039 hypothetical protein; Validated
Probab=95.92 E-value=0.38 Score=46.51 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-H---HH
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGE-M---SS 209 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~e-I---ss 209 (299)
..+...+.+++++++...++.-.-|.-++.|+..-+-+|+..+++|.-+|-.-.....+.++|+.+|...=.+ + ..
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666788999999999999999999999999999999999999999999988999999999998887533 4 44
Q ss_pred HHHHH-hhhh
Q 022306 210 FMQIF-EGLI 218 (299)
Q Consensus 210 lm~~f-e~lt 218 (299)
|...| -.|.
T Consensus 195 ~~~~~~~~l~ 204 (343)
T PRK09039 195 YRSEFFGRLR 204 (343)
T ss_pred hHHHHHHHHH
Confidence 44333 4556
No 5
>PRK11637 AmiB activator; Provisional
Probab=95.80 E-value=0.2 Score=48.80 Aligned_cols=80 Identities=13% Similarity=0.244 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH
Q 022306 102 EIEELVALREQVEDLQRKMFE----KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA 177 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~E----KDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqA 177 (299)
..+++..++.||..+++++.+ ..++...++.+..++..++.+|+.+..++.+-+.-|..++.++.+++..+...+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555542 2222233333333333333344444444433333333344444444444333333
Q ss_pred HHHH
Q 022306 178 ALEK 181 (299)
Q Consensus 178 aLEK 181 (299)
.|.+
T Consensus 125 ~l~~ 128 (428)
T PRK11637 125 LLAA 128 (428)
T ss_pred HHHH
Confidence 3333
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.77 E-value=0.55 Score=49.30 Aligned_cols=29 Identities=10% Similarity=0.243 Sum_probs=11.4
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 022306 185 EAMTVSRKAEKLQEEVESMQGEMSSFMQI 213 (299)
Q Consensus 185 E~~~sn~Kve~Lq~dl~~m~~eIsslm~~ 213 (299)
++.....+.+.++.++..++.++..+...
T Consensus 890 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 918 (1164)
T TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKR 918 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444433333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.63 E-value=0.66 Score=48.77 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 140 VHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 140 ~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+...++.+..++.+.+.-+...+.++.+....+.+....+..+.-++..-..+++.++.++..++.++..+...++.+.
T Consensus 852 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 930 (1164)
T TIGR02169 852 IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444455555555555555555666666666666666666666666666666666555555544443
No 8
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.28 E-value=1.8 Score=37.54 Aligned_cols=119 Identities=22% Similarity=0.203 Sum_probs=109.6
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 022306 100 EKEIEELVALREQVEDLQRKMFEKDELLK-----SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 174 (299)
Q Consensus 100 ~k~~eEl~~LreQVeeLqkKL~EKDelLk-----Sae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~Lad 174 (299)
.+-|-.+..|+.|+..++.+|..||++=. --+++..+...+..+|||=..+|..=-..+.++-..|+..+-+|..
T Consensus 9 ~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~ 88 (177)
T PF13870_consen 9 SKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHF 88 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999844 4567789999999999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
...-+..+.-++........+++.++.....+...+.....+|.
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987
No 9
>PRK09039 hypothetical protein; Validated
Probab=95.26 E-value=2.6 Score=40.84 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=14.8
Q ss_pred HHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 158 IKSTQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 158 ikStq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
+-+++.+|..++...++.++-++.|+-++
T Consensus 153 la~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 153 LAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554443
No 10
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.13 E-value=1.2 Score=40.44 Aligned_cols=103 Identities=29% Similarity=0.364 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKS------------QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKI 170 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~------------em~a~~akvDELr~~laeKe~likStq~QLsdaki 170 (299)
++.|...++++-++.++|.++|+-|..+..... +-..+..+|+.+...+.++|.-|+.+.-+|
T Consensus 74 r~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l----- 148 (194)
T PF15619_consen 74 RERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL----- 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 445555556666777777777776665444321 222333333333333333333333322211
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 171 KLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 171 ~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
.|+++ -..+++..-+.|+..++.++..++-||..|...+.
T Consensus 149 eL~~k-----~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 149 ELENK-----SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 15677888899999999999999999999887765
No 11
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.03 E-value=0.7 Score=45.44 Aligned_cols=96 Identities=22% Similarity=0.292 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
..+..|..++.+|+.++.+=+..+..++....+.+.+..++.+++..+..+..-|.+...++...+ +.+++|+
T Consensus 299 ~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~-------~ei~~l~ 371 (562)
T PHA02562 299 DRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVK-------AAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 466777778888888877777777777777777777777777777777776666655444444433 3344444
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGE 206 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~e 206 (299)
-+....+.+...++.++..+..+
T Consensus 372 ~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 372 AEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred hhhhchHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444333
No 12
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.83 E-value=1.6 Score=45.53 Aligned_cols=13 Identities=0% Similarity=-0.105 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 022306 251 MQRMEEAREAYIT 263 (299)
Q Consensus 251 ~~kmE~aR~aY~a 263 (299)
+..++.....+-+
T Consensus 967 ~~~l~~~i~~lg~ 979 (1179)
T TIGR02168 967 EEEARRRLKRLEN 979 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 4455554444444
No 13
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.73 E-value=2.7 Score=38.23 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
+.......+|+.|..+|.+=...+..+..-+.++..+|.-...-|+.++-=+-....|+..|+.+|..+...+-+|-...
T Consensus 85 ~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 85 NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 44445566777777777777777777777777777888888888888888888888888888888888888777777666
Q ss_pred hhhh
Q 022306 215 EGLI 218 (299)
Q Consensus 215 e~lt 218 (299)
++..
T Consensus 165 ~~~~ 168 (237)
T PF00261_consen 165 EKAS 168 (237)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6544
No 14
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=94.67 E-value=2.2 Score=39.59 Aligned_cols=85 Identities=26% Similarity=0.316 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH------------HHHHHh----------HHhhHHHHhhhhHHHHHHHHHHHHHHhhhH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDS------------LIKSTQ----------LQLSDAKIKLADKQAALEKSQWEAMTVSRK 192 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~------------likStq----------~QLsdaki~LadKqAaLEKlewE~~~sn~K 192 (299)
.++..++.+|.++....+..|. +|.|+. .+...+...|.-|++.++||.|- .+..|
T Consensus 83 ~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~--~k~dK 160 (234)
T cd07664 83 SQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYA--NKPDK 160 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CchhH
Confidence 5888999999999999999998 334432 36788999999999999999883 24679
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhhhcC
Q 022306 193 AEKLQEEVESMQGEMSSFMQIFEGLIKND 221 (299)
Q Consensus 193 ve~Lq~dl~~m~~eIsslm~~fe~lt~n~ 221 (299)
++.++.+|...+.-.......|+.|+++.
T Consensus 161 ~~~~~~ev~~~e~~~~~a~~~fe~Is~~~ 189 (234)
T cd07664 161 LQQAKDEIKEWEAKVQQGERDFEQISKTI 189 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999553
No 15
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.63 E-value=2 Score=39.54 Aligned_cols=105 Identities=15% Similarity=0.253 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH-----------HhhHHHHhhhhHHH
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQL-----------QLSDAKIKLADKQA 177 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~-----------QLsdaki~LadKqA 177 (299)
.+.+|++++.......+.+.++ +.++..+..+|+.|+.++..=.....++.. ++.+.+..++.+.+
T Consensus 193 y~~k~~~l~~~~~~~~~~~~~~---~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~ 269 (312)
T PF00038_consen 193 YQSKLEELRQQSEKSSEELESA---KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEE 269 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchh---HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccch
Confidence 3456666666665555444433 333344444444444333332222333333 33334455556666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 178 ALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 178 aLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
-|.++.+++-.-..-...|-.-=-+|+.||.+.+.+|+|
T Consensus 270 el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLEg 308 (312)
T PF00038_consen 270 ELAELREEMARQLREYQELLDVKLALDAEIATYRKLLEG 308 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 666666666666555566666556788899988888875
No 16
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.59 E-value=1.6 Score=37.63 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVE 201 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~ 201 (299)
..+-.++.+|.-|-.+|..-+.-++.|.-.|.++.+......--+..|+-+...-.+|.+.|...+.
T Consensus 73 ~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333555666666666666666666677777777666666666666666666666666666665554
No 17
>PRK03918 chromosome segregation protein; Provisional
Probab=94.57 E-value=2.2 Score=44.50 Aligned_cols=106 Identities=13% Similarity=0.280 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH---hhHHHHhhhhHHHHHHHHH
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQ---LSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~Q---Lsdaki~LadKqAaLEKle 183 (299)
..+..+++.|...+.+.+++.+.+..++.++..+.+.+.++..++...+..+...+.+ |..++..+...+..++.++
T Consensus 172 ~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~ 251 (880)
T PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666666666655555443 2333333344444444444
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
-........+..++.++..++.++..+..
T Consensus 252 ~~~~~l~~~i~~l~~el~~l~~~l~~l~~ 280 (880)
T PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEE 280 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333344455554444444444333
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=94.51 E-value=7.2 Score=40.75 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 174 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 174 dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+..+.++.++-+...-+.+...++.....+...|..+...++.|.
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556655555666666667777777777776666666665
No 19
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.46 E-value=0.61 Score=52.32 Aligned_cols=112 Identities=21% Similarity=0.355 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA-AEKDSLIKSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~l-aeKe~likStq~QLsdaki~LadKqAaLE 180 (299)
|.+.+.-|++||++|.+++-+= =+++-. ++++..++.+||++.... .-...=|++++.||---...++..+++++
T Consensus 856 d~~~l~~~~~~ie~l~kE~e~~---qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~ 931 (1293)
T KOG0996|consen 856 DKKRLKELEEQIEELKKEVEEL---QEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIK 931 (1293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 5666777788888888877442 233333 688888888888887554 33455678888888888888888888888
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 181 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
.-.|-+..--+++..|..+...++.++-.|+..+.++
T Consensus 932 ~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~ 968 (1293)
T KOG0996|consen 932 TSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGL 968 (1293)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8777777777777777777777777777777666544
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.36 E-value=1.7 Score=45.42 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDS 156 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~ 156 (299)
|+.|++..+ -|+++|++-...++.++..++..++.|+.+|.....
T Consensus 141 lQ~qlE~~q---kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~e 185 (546)
T PF07888_consen 141 LQNQLEECQ---KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEE 185 (546)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666554 456667777777766666666666666666654433
No 21
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.35 E-value=1.9 Score=48.05 Aligned_cols=182 Identities=20% Similarity=0.238 Sum_probs=124.0
Q ss_pred ccceeeecCCChhhhcccCC------CcccCCCCCCCCCcccCCCCCccc------cCCCCCCCCCCCcc-ccchhhhhh
Q 022306 33 RGSMIYTKTPSRESLLKKTT------DPKGRNAAQSLPPKRKKDNGDKDL------GKNANSNQDSDSFS-IFSSRALVS 99 (299)
Q Consensus 33 r~SmiYT~aP~resl~Kk~~------d~K~~k~~qs~p~Kk~rd~gd~dq------~k~~~~~q~~en~s-~~~s~~~~~ 99 (299)
.-+||.|-.|+.-.|-.-.+ ..|.-+++.-++.|--++---||- =|..-...+.-||- ++-++-.-.
T Consensus 360 KT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~ 439 (1041)
T KOG0243|consen 360 KTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQE 439 (1041)
T ss_pred eeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHH
Confidence 56899999999665544333 235555555556443222111110 00000001122222 222222111
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 022306 100 EKEIEELVALREQVEDLQRKMFEKDELLKSLESSKS----QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 175 (299)
Q Consensus 100 ~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~----em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadK 175 (299)
+ .|.-...+||++|..+|..++..|+.+...-. .-..++.+.+.++..|..+..-+.+++.++..++-.|..+
T Consensus 440 e---~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~ 516 (1041)
T KOG0243|consen 440 E---KEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEE 516 (1041)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 14667789999999999999999998877632 2246788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 176 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 176 qAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
.-.+-+++-=.++.-+-+.+||..++.++-++++|-..++..
T Consensus 517 e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~ 558 (1041)
T KOG0243|consen 517 EEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK 558 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 988888777777777779999999999999999987666543
No 22
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.20 E-value=3.1 Score=38.88 Aligned_cols=17 Identities=6% Similarity=0.204 Sum_probs=7.3
Q ss_pred HhhhhhhHHHHHHHHhh
Q 022306 200 VESMQGEMSSFMQIFEG 216 (299)
Q Consensus 200 l~~m~~eIsslm~~fe~ 216 (299)
+..++.++..+...++.
T Consensus 248 l~~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 248 LTEAQARLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 23
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=94.17 E-value=2 Score=40.07 Aligned_cols=84 Identities=20% Similarity=0.368 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH------------HHHHh----------HHhhHHHHhhhhHHHHHHHHHHHHHHhhhH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSL------------IKSTQ----------LQLSDAKIKLADKQAALEKSQWEAMTVSRK 192 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~l------------ikStq----------~QLsdaki~LadKqAaLEKlewE~~~sn~K 192 (299)
+.+..++.+|.++....++.|.+ |.|+. .+.++++..|.-|++.++||.|- ....|
T Consensus 83 s~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~--~~~dK 160 (234)
T cd07665 83 SQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWA--NKPDK 160 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchH
Confidence 58899999999999999998864 44442 46889999999999999999883 35689
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhhhc
Q 022306 193 AEKLQEEVESMQGEMSSFMQIFEGLIKN 220 (299)
Q Consensus 193 ve~Lq~dl~~m~~eIsslm~~fe~lt~n 220 (299)
+..++.||...+..+..+..-|+.|+++
T Consensus 161 ~~~a~~Ev~e~e~k~~~a~~~fe~is~~ 188 (234)
T cd07665 161 LQQAKDEIAEWESRVTQYERDFERISAT 188 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999944
No 24
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.16 E-value=3 Score=46.08 Aligned_cols=10 Identities=40% Similarity=0.368 Sum_probs=6.6
Q ss_pred HHHHHHHHhh
Q 022306 260 AYITAVAMAK 269 (299)
Q Consensus 260 aY~aAvaaAK 269 (299)
.|..||.+|=
T Consensus 530 ~y~~Aie~al 539 (1163)
T COG1196 530 KYETALEAAL 539 (1163)
T ss_pred HHHHHHHHHc
Confidence 5777776664
No 25
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.14 E-value=1.5 Score=43.09 Aligned_cols=28 Identities=18% Similarity=0.031 Sum_probs=19.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHhh
Q 022306 242 DIDDLDDVEMQRMEEAREAYITAVAMAK 269 (299)
Q Consensus 242 ~~d~~~~~e~~kmE~aR~aY~aAvaaAK 269 (299)
+...++.-+.+++-.|+.....+++..+
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~ 492 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKV 492 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHh
Confidence 3456677778888888777766666644
No 26
>PRK02224 chromosome segregation protein; Provisional
Probab=94.00 E-value=1.7 Score=45.45 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEK--DELLKSLESSKSQVNAVHLKLDELKRL 150 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EK--DelLkSae~~~~em~a~~akvDELr~~ 150 (299)
-...++.|+++|+..|.++ ..+...+.....++..+...+++++..
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~~~~~~ 228 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQ 228 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888776 334444444444444444444443333
No 27
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.90 E-value=2.1 Score=47.68 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----------------------------------------------HH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESS----------------------------------------------KS 135 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~----------------------------------------------~~ 135 (299)
..+++...++.+..||.++.++-.-..++.+. .+
T Consensus 286 ~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n 365 (1074)
T KOG0250|consen 286 QEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIEN 365 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666665522 17
Q ss_pred HHHHHHHHHHHHHHHHHhh-HHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhh-------HHHHHHHHHhhhhhhH
Q 022306 136 QVNAVHLKLDELKRLAAEK-DSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSR-------KAEKLQEEVESMQGEM 207 (299)
Q Consensus 136 em~a~~akvDELr~~laeK-e~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~-------Kve~Lq~dl~~m~~eI 207 (299)
.|.++...+|.+++++++= ..+.++++.++.+..-++...+-.+|++|-.+..-.. ++...++++++.+.+|
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i 445 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEI 445 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7888888889999988874 4455999999999999999999999988875554444 4445566666677777
Q ss_pred HHHHHHHhhhh
Q 022306 208 SSFMQIFEGLI 218 (299)
Q Consensus 208 sslm~~fe~lt 218 (299)
.++....+.++
T Consensus 446 ~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 446 LQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHH
Confidence 77777766555
No 28
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.89 E-value=4 Score=38.94 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=46.6
Q ss_pred HHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 157 LIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 157 likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
-+..+..+|...+..++.++..|+.++-+....+.+++.+.++...+..+|..+..+.++
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777788888888888888888888888888888888888877766653
No 29
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.80 E-value=2.6 Score=40.71 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH----HHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDS----LIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 209 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~----likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIss 209 (299)
...-+.+..++..|++...+-+. .+..+..+|......+..|+.-++.++-++...+.+++...++...++.+|..
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777544 67777778888888888888888888888888888888888888888888877
Q ss_pred HHHHHhh
Q 022306 210 FMQIFEG 216 (299)
Q Consensus 210 lm~~fe~ 216 (299)
...+++.
T Consensus 258 ae~~~~~ 264 (312)
T smart00787 258 AEKKLEQ 264 (312)
T ss_pred HHHHHHh
Confidence 7776653
No 30
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.80 E-value=5 Score=36.30 Aligned_cols=113 Identities=15% Similarity=0.362 Sum_probs=89.0
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 022306 100 EKEIEELVALREQVEDLQRKMFEKDELLKSLES----SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 175 (299)
Q Consensus 100 ~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~----~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadK 175 (299)
-.+-+-+..|.+||.+++++....+-.+..+.. +..-+..+...+++|++++..=+ .-...|..++..+...
T Consensus 23 ~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~----kdK~~L~~~k~rl~~~ 98 (201)
T PF13851_consen 23 LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE----KDKQSLQNLKARLKEL 98 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 345567889999999999998888777665544 35677788999999999998633 4455788899999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH-HHHHHHhh
Q 022306 176 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS-SFMQIFEG 216 (299)
Q Consensus 176 qAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs-slm~~fe~ 216 (299)
+--|..|+||-=.-..++.+++.+-+.+..-+- ++..+.++
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888875544 44444443
No 31
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.74 E-value=4.9 Score=36.00 Aligned_cols=107 Identities=18% Similarity=0.325 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh---
Q 022306 102 EIEELVALREQVEDLQR-----KMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA--- 173 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqk-----KL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~La--- 173 (299)
-+.+...|+.+|+++=. ..+....+-..++....++..+...++.+++++.++-..|...+.+|...+..|.
T Consensus 32 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~ 111 (302)
T PF10186_consen 32 LKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQ 111 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777655 6666666666666667777777777777777777777777777777766666665
Q ss_pred ----hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 174 ----DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 174 ----dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
.....++++.-++-....++..++..+..-+..+-
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~ 150 (302)
T PF10186_consen 112 DLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLI 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233444444555555555566666666555544
No 32
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.61 E-value=3.5 Score=40.43 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 213 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~ 213 (299)
....|.+..++-..+-.|.||--++.++|-.|+.++-.+-++..+..--+--+-+.--|-+.|++-|..++.|-..|+++
T Consensus 157 esK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQ 236 (305)
T PF14915_consen 157 ESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQ 236 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566666666666666666666666666666555555555666678899999999999999999999
Q ss_pred Hhhhh
Q 022306 214 FEGLI 218 (299)
Q Consensus 214 fe~lt 218 (299)
++..-
T Consensus 237 LddA~ 241 (305)
T PF14915_consen 237 LDDAH 241 (305)
T ss_pred HHHHH
Confidence 98544
No 33
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.60 E-value=2.4 Score=39.60 Aligned_cols=27 Identities=4% Similarity=0.104 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 190 SRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
..+...++.++..++.++..+...++.
T Consensus 245 ~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 245 LEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677888888888888888777663
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.34 E-value=3.6 Score=44.53 Aligned_cols=114 Identities=26% Similarity=0.325 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESS-------------------------KSQVNAVHLKLDELKRLAAEKDSLIK 159 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~-------------------------~~em~a~~akvDELr~~laeKe~lik 159 (299)
+-..|+..|+.|.-+|-+|...|.-.... ..+++.++++||.|..+|.+||..+.
T Consensus 337 ~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~ 416 (775)
T PF10174_consen 337 EAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLD 416 (775)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999998888654432 26889999999999999999999887
Q ss_pred HHhHHhh---------HH----HHhhhhH------------------HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 160 STQLQLS---------DA----KIKLADK------------------QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 160 Stq~QLs---------da----ki~LadK------------------qAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
....-|. .+ ..-++++ +--++..+.|+..-..+++.||.+|+..+..+.
T Consensus 417 ~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~ 496 (775)
T PF10174_consen 417 EEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLE 496 (775)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 7776666 11 1122233 223344555556666666666666666655444
Q ss_pred HHHHHHhhhh
Q 022306 209 SFMQIFEGLI 218 (299)
Q Consensus 209 slm~~fe~lt 218 (299)
.+..-.-+++
T Consensus 497 ~~kee~s~l~ 506 (775)
T PF10174_consen 497 DAKEEASKLA 506 (775)
T ss_pred HhhhHHHHHh
Confidence 4444444454
No 35
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.25 E-value=5.4 Score=40.66 Aligned_cols=107 Identities=25% Similarity=0.345 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh-------
Q 022306 104 EELVALREQVEDLQRKM----FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL------- 172 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL----~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~L------- 172 (299)
..+.....++++.+..| .|-..+-.+++++..++.-....+..++.....-...|.+++.+|...+..|
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e 360 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh
Confidence 34666777777766666 4666777888889999999999999999999999999999998888777766
Q ss_pred -------hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 173 -------ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 173 -------adKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
.++...|+++--|+-.-...++.++.++..+..+|...
T Consensus 361 ~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ 405 (522)
T PF05701_consen 361 EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQT 405 (522)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888787777777777777777777776644
No 36
>PRK02224 chromosome segregation protein; Provisional
Probab=93.22 E-value=2.9 Score=43.86 Aligned_cols=12 Identities=17% Similarity=-0.039 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhh
Q 022306 258 REAYITAVAMAK 269 (299)
Q Consensus 258 R~aY~aAvaaAK 269 (299)
...|-.++..++
T Consensus 435 ~~~~~~~l~~~~ 446 (880)
T PRK02224 435 LRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 37
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.04 E-value=5.4 Score=40.66 Aligned_cols=111 Identities=23% Similarity=0.314 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---hhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKR-LAA---EKDSLIKSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~-~la---eKe~likStq~QLsdaki~LadKqAaLE 180 (299)
+|..-.+.|+.|...+.....+=.-+.....++..+++.|...+. .+. +........+..|..++..|.+.+..|+
T Consensus 219 ~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~ 298 (522)
T PF05701_consen 219 ELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELE 298 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555522222222233334444444444444433 111 1223344455557777777777788888
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 181 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
+..-|+..-...|+.|+.+|.....+|..+..-..
T Consensus 299 ~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~ 333 (522)
T PF05701_consen 299 KAKEEASSLRASVESLRSELEKEKEELERLKEREK 333 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888777777665443
No 38
>PRK01156 chromosome segregation protein; Provisional
Probab=92.99 E-value=11 Score=39.97 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 022306 130 LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVES 202 (299)
Q Consensus 130 ae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~ 202 (299)
++....+...+..+++.++..+++.+.-+.....++...+-.+...+-++++++-=-+. ...+..++.-++.
T Consensus 676 ~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~-~~~l~~~r~~l~k 747 (895)
T PRK01156 676 INDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKA-IGDLKRLREAFDK 747 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 34445566666667777777777777777777777666666666555555543332111 1134456665654
No 39
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.71 E-value=4.4 Score=45.37 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
.-+++-.+.+.|++++..+-|++.+++..+.-
T Consensus 739 ~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~ 770 (1174)
T KOG0933|consen 739 LLDDLKELLEEVEESEQQIKEKERALKKCEDK 770 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888888888888888776654
No 40
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=92.67 E-value=2.9 Score=38.77 Aligned_cols=96 Identities=26% Similarity=0.341 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 184 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlew 184 (299)
||.-|.-|+-|.|-.+.-|+ ++|..+.+.+-+++..+..++.-+..++. .+-.|++.||..|-
T Consensus 11 EIsLLKqQLke~q~E~~~K~----------~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~-------~~~~K~~ELE~ce~ 73 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKD----------SEIVSLRAQLRELRAELRNKESQIQELQD-------SLRTKQLELEVCEN 73 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHhhHhHHHhHH
Confidence 67777777777777776665 45666666666666666666665555444 44568888999999
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 185 EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 185 E~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
|+-.....++-|++.++.+..||..|..-+..+
T Consensus 74 ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 74 ELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 998888888999999999999999999888876
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.38 E-value=10 Score=35.92 Aligned_cols=48 Identities=17% Similarity=0.259 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~la 152 (299)
.+++|..++++++.+.+.+.+++..++.+ .+++..+...|++++.+..
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~l---e~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDL---ENQVSQLESEIQEIRERIK 76 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888887776655544 4455555555655555544
No 42
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.35 E-value=7 Score=36.48 Aligned_cols=102 Identities=17% Similarity=0.327 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 185 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE 185 (299)
|..|+.++.+|++. |.+++..++.+.++=.-|..--.|+...+.||.+++. +|..-+.+...+.+-+-.++.|
T Consensus 3 i~~ir~K~~~lek~---k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~e----eLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 3 IKEIRNKTLELEKL---KNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVE----ELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888876 5678888888887777777777777777889988886 6777888888888888888888
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 186 AMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 186 ~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
-...-.++..+++++.-|..+|-.++.-+
T Consensus 76 r~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888889888888888888887763
No 43
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.35 E-value=5 Score=44.86 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh-------hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL-------ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 207 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~L-------adKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eI 207 (299)
+......++++-+++++.+|..-|+.+-....+.=..+ -..+-++.+++.++-.-+.++..++.++..+++.+
T Consensus 528 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l 607 (1311)
T TIGR00606 528 NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNK 607 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778888888888888888877666654333222 22344555555555555555555555555554444
Q ss_pred -------HHHHHHHhhhhhcCCCCCCCCCCCCCcccccccCCCC--CCChHHHHHHHHHHHHHHHHHHHh--hhcC
Q 022306 208 -------SSFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDID--DLDDVEMQRMEEAREAYITAVAMA--KEKQ 272 (299)
Q Consensus 208 -------sslm~~fe~lt~n~S~~~~~~d~d~~p~~~d~l~~~d--~~~~~e~~kmE~aR~aY~aAvaaA--Kenp 272 (299)
..+...++...++.. ++|++.+|+-.-...-+ +.-..+....+-....|-.++..| +.+|
T Consensus 608 ~~~~~~l~~~~~eL~~~~~~i~-----~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~ 678 (1311)
T TIGR00606 608 NHINNELESKEEQLSSYEDKLF-----DVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQS 678 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 444455554444333 34444444321111101 111222333444448899999999 6443
No 44
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.32 E-value=4.1 Score=48.07 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 213 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~ 213 (299)
.++..+...+++...+.++.+.-.+..+..+.+-+..+.|....+.|++.|.-...+++..|++++..++-.|+.|..-
T Consensus 908 ~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke 986 (1930)
T KOG0161|consen 908 KELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777778888888888888888888888888888999999999999999999999999999999988888877643
No 45
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.12 E-value=2.9 Score=46.63 Aligned_cols=70 Identities=14% Similarity=0.277 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHH---hHHhhHHHHhhh
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDEL-------KRLAAEKDSLIKST---QLQLSDAKIKLA 173 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDEL-------r~~laeKe~likSt---q~QLsdaki~La 173 (299)
.|+..|+.||++|..++..-..- .+++.+..++..+..+++.+ ..+...+..-|..+ ..++.+.+.+++
T Consensus 799 ~ei~~l~~qie~l~~~l~~~~~~-~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~ 877 (1311)
T TIGR00606 799 MELKDVERKIAQQAAKLQGSDLD-RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877 (1311)
T ss_pred HHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444433221 24444444444444444444 55555555555555 333344444444
Q ss_pred h
Q 022306 174 D 174 (299)
Q Consensus 174 d 174 (299)
+
T Consensus 878 ~ 878 (1311)
T TIGR00606 878 T 878 (1311)
T ss_pred H
Confidence 4
No 46
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.81 E-value=2.2 Score=38.81 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQ------------------VNAVHLKLDELKRLAAEKDSLIKSTQLQ 164 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~e------------------m~a~~akvDELr~~laeKe~likStq~Q 164 (299)
+.++-...++++.++.+|-+.+.-+..++.-..- +..+..+++++.+.+-+-+.-++.+...
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r 86 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR 86 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567777778888888887777766666554311 1123445555555555555555554443
No 47
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=91.75 E-value=6.5 Score=43.49 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=28.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 167 DAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 167 daki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+..-..+++.-.||+++++.=.-++|.++...-+++++.|...+.-.|+.+.
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555556666655555555555555555555555555555555444
No 48
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.74 E-value=7.2 Score=43.18 Aligned_cols=70 Identities=19% Similarity=0.313 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQ 204 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~ 204 (299)
.++..+..+++++..++..=+.-+...+.++...+..+...++.+..++-++.....+.+.|+..+..+.
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~ 897 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333333444444444444444444444444444444444444444433333
No 49
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.55 E-value=13 Score=36.54 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
.+|+.+...-+-|-++|+.=++=+.|+.-+||.+.--|.+|-.+||-+|+++-..-+..-.|+.-.-+=++.++.++..-
T Consensus 137 ~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq 216 (305)
T PF14915_consen 137 SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ 216 (305)
T ss_pred chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46777788888899999999999999999999999999999999999999999999999988888888888888777655
Q ss_pred hhh
Q 022306 215 EGL 217 (299)
Q Consensus 215 e~l 217 (299)
+.+
T Consensus 217 es~ 219 (305)
T PF14915_consen 217 ESL 219 (305)
T ss_pred HHH
Confidence 433
No 50
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.47 E-value=1.7 Score=38.50 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl 182 (299)
.+...+..++..|...+.+|...+..++.++.--++.+.-...-+.+|
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555554444444444443333333333
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.38 E-value=10 Score=39.73 Aligned_cols=30 Identities=23% Similarity=0.185 Sum_probs=15.4
Q ss_pred eeecCCChhh-hcccCCCcccCCCCCCCCCcc
Q 022306 37 IYTKTPSRES-LLKKTTDPKGRNAAQSLPPKR 67 (299)
Q Consensus 37 iYT~aP~res-l~Kk~~d~K~~k~~qs~p~Kk 67 (299)
.|=|-|.-+. +. -|.+-+|.-...|+|=.=
T Consensus 80 yyLPk~~~e~Yqf-cYv~~~g~V~G~S~pFqf 110 (546)
T PF07888_consen 80 YYLPKDDDEFYQF-CYVDQKGEVRGASTPFQF 110 (546)
T ss_pred ccCCCCCCCeEEE-EEECCCccEEEecCCccc
Confidence 3556663332 33 344556666666655543
No 52
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.19 E-value=1.1 Score=43.33 Aligned_cols=128 Identities=29% Similarity=0.330 Sum_probs=78.2
Q ss_pred ccchhhhhhhhcHHHH----------HHHHHHHHHHHHHHhhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Q 022306 91 IFSSRALVSEKEIEEL----------VALREQVEDLQRKMFEKDELL-----------KSLESSKSQVNAVHLKLDELKR 149 (299)
Q Consensus 91 ~~~s~~~~~~k~~eEl----------~~LreQVeeLqkKL~EKDelL-----------kSae~~~~em~a~~akvDELr~ 149 (299)
+..+..-.++|.|.=+ ..|.=||+-|+.+|.|.+|.| +-++-.+.....++.++|+|+.
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666655432 344555666666665555543 4566778889999999999999
Q ss_pred HHHhhHHHHHHHhHHhhH----------------HHHhhhhHHHH--HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 022306 150 LAAEKDSLIKSTQLQLSD----------------AKIKLADKQAA--LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 211 (299)
Q Consensus 150 ~laeKe~likStq~QLsd----------------aki~LadKqAa--LEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm 211 (299)
+|.++|.||+--++=|-. .++-+.-..++ |+.. +-=+=--++-+|-++=..|..+|--|.
T Consensus 162 ~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~a--G~g~LDvRLkKl~~eke~L~~qv~klk 239 (302)
T PF09738_consen 162 QLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESA--GDGSLDVRLKKLADEKEELLEQVRKLK 239 (302)
T ss_pred HHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhccc--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999755444432 12222211111 1111 000001356677777888889999999
Q ss_pred HHHhhhhhc
Q 022306 212 QIFEGLIKN 220 (299)
Q Consensus 212 ~~fe~lt~n 220 (299)
.+++....+
T Consensus 240 ~qLee~~~~ 248 (302)
T PF09738_consen 240 LQLEERQSE 248 (302)
T ss_pred HHHHHHHhc
Confidence 999765533
No 53
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.18 E-value=13 Score=35.72 Aligned_cols=100 Identities=28% Similarity=0.400 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHh-----------------
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIK----STQ----------------- 162 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~lik----Stq----------------- 162 (299)
.||-.|..||++++.|.-++++ -+..+..+|+.++.+|++++..+.++.-+++ ++|
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~---~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkS 128 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQK---EIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKS 128 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCc
Confidence 4788899999999998877764 5567778899999999999888888765543 111
Q ss_pred ----------------------HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q 022306 163 ----------------------LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGE 206 (299)
Q Consensus 163 ----------------------~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~e 206 (299)
.++-+-|..|-+||++|++-.-++..-.+..+.++.+|.+-..+
T Consensus 129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e 194 (265)
T COG3883 129 FSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAE 194 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333455666777777766666665555555544444443333
No 54
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.02 E-value=3.4 Score=43.19 Aligned_cols=83 Identities=12% Similarity=0.239 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 133 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 133 ~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
+..++..+...+++|++.+.++...+..++..+.+.---|++.+|.+.-+-+-+..-...+..|..+.+-++.+|.....
T Consensus 111 ~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 111 LEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35788888999999999999999999999988888888888888877777666666555555555555555555555554
Q ss_pred HHh
Q 022306 213 IFE 215 (299)
Q Consensus 213 ~fe 215 (299)
+++
T Consensus 191 ~ld 193 (546)
T KOG0977|consen 191 QLD 193 (546)
T ss_pred HHH
Confidence 433
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.86 E-value=15 Score=35.17 Aligned_cols=51 Identities=18% Similarity=0.368 Sum_probs=20.7
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
+|..++..|++..+.|+....++.....+++.+++++..+..+++.+...+
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444433333
No 56
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.82 E-value=4.4 Score=42.15 Aligned_cols=84 Identities=14% Similarity=0.186 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHH-hhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhH---HHHHHHHHhhhhhhHHHH
Q 022306 135 SQVNAVHLKLDELKRLAA-EKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRK---AEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 135 ~em~a~~akvDELr~~la-eKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~K---ve~Lq~dl~~m~~eIssl 210 (299)
-+|.++++++++|++++. +...++.+++.++..++......++.+.+++-.+..-+.+ ...|+-+.+..+.-...|
T Consensus 316 P~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~l 395 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESY 395 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888887764 4677788888888888888888888888887777655433 335555555555555566
Q ss_pred HHHHhhhh
Q 022306 211 MQIFEGLI 218 (299)
Q Consensus 211 m~~fe~lt 218 (299)
...++.+.
T Consensus 396 l~r~~e~~ 403 (754)
T TIGR01005 396 LTNYRQAA 403 (754)
T ss_pred HHHHHHHH
Confidence 66665443
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.73 E-value=5.2 Score=36.65 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK 181 (299)
-++-+-.|+.|+.+|+.+|.+=+.- .+....+|...+++.+..|..+..+...
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~L~~~n~~-------------- 143 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT-------------WNQRTAEMQQKVAQSDSVINGLKEENQK-------------- 143 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 5667778888888888887774321 2233344444444444444443333333
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHH--HHHH
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGEMS--SFMQ 212 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~eIs--slm~ 212 (299)
|.-|+-+...+++.|+.+++.++..+. +||+
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~ 176 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMY 176 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666677777777776553 5654
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.38 E-value=1.5 Score=38.68 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 184 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlew 184 (299)
-+..|++.+.+|++ +-..+..+++.+..++.+++..+.+++.-|..++.++. ..+..+..++-
T Consensus 75 ~~~~l~~ELael~r----------~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~-------~L~~~~~~l~~ 137 (194)
T PF08614_consen 75 KLAKLQEELAELYR----------SKGELAQQLVELNDELQELEKELSEKERRLAELEAELA-------QLEEKIKDLEE 137 (194)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cccccccccccccc----------ccccccccccccccccchhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 34555555555544 34445666677777777777666666665555554443 33334444555
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 185 EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 185 E~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
++...++-++.|+.++.+++-+++.+-..++++.
T Consensus 138 ~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 138 ELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666677777777777666666666665
No 59
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.01 E-value=9.3 Score=45.29 Aligned_cols=110 Identities=24% Similarity=0.321 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHH-------HHHhHHhhHHHHhhhhHHH
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAEKDSLI-------KSTQLQLSDAKIKLADKQA 177 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~~laeKe~li-------kStq~QLsdaki~LadKqA 177 (299)
|.+.+.+|+..|.+.++-++++.-. ..++..+...+.+-++...+-|..+ +-.|.+..+.+..-.+.+.
T Consensus 990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5555555555555555555544433 2444444555554444444444333 4444444555666666667
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 178 ALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 178 aLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.|.+.+||+=.-+.|+++++..+..+++.|..|......|.
T Consensus 1070 ~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~ 1110 (1930)
T KOG0161|consen 1070 QLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELE 1110 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888888888877777777777666555
No 60
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.00 E-value=12 Score=34.42 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHh-----hHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 138 NAVHLKLDELKRLAAE-----KDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 138 ~a~~akvDELr~~lae-----Ke~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
..+.+.|.++|.++.. |.-+=..-+.++.+.......-..++..+.-|++...+++..|+.++++++....+|-.
T Consensus 165 ~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 165 SDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 3455566666665532 22333444556666666666666677777778888888888888888888877777777
Q ss_pred HHhhhh
Q 022306 213 IFEGLI 218 (299)
Q Consensus 213 ~fe~lt 218 (299)
.+..+.
T Consensus 245 ~l~~le 250 (312)
T PF00038_consen 245 QLRELE 250 (312)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 666544
No 61
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.96 E-value=9.7 Score=37.44 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 022306 107 VALREQVEDL 116 (299)
Q Consensus 107 ~~LreQVeeL 116 (299)
..++.++++.
T Consensus 171 ~~~~~~L~~a 180 (498)
T TIGR03007 171 KTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 62
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.86 E-value=12 Score=32.25 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=9.0
Q ss_pred HHHHHHHhhhhhhHHHHHHH
Q 022306 194 EKLQEEVESMQGEMSSFMQI 213 (299)
Q Consensus 194 e~Lq~dl~~m~~eIsslm~~ 213 (299)
..++.+...+...|......
T Consensus 168 ~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 168 ERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 63
>PRK01156 chromosome segregation protein; Provisional
Probab=89.84 E-value=16 Score=38.75 Aligned_cols=13 Identities=31% Similarity=0.353 Sum_probs=5.3
Q ss_pred CCCCChHHHHHHH
Q 022306 243 IDDLDDVEMQRME 255 (299)
Q Consensus 243 ~d~~~~~e~~kmE 255 (299)
...++.-....+-
T Consensus 799 ~~~lS~G~~~~~~ 811 (895)
T PRK01156 799 IDSLSGGEKTAVA 811 (895)
T ss_pred cccCCHhHHHHHH
Confidence 3444444433333
No 64
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=89.49 E-value=2.2 Score=37.76 Aligned_cols=96 Identities=22% Similarity=0.198 Sum_probs=68.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH-HHHHHHHHHHHHhhhHHHHH
Q 022306 118 RKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ-AALEKSQWEAMTVSRKAEKL 196 (299)
Q Consensus 118 kKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq-AaLEKlewE~~~sn~Kve~L 196 (299)
..|.++|.-|.++=..-.+-..++++|..|+.++..+|..|+.+..+|.++...|...- -+-+++ .+..+.++
T Consensus 5 ~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~~-----~~~~~~~~- 78 (188)
T PF10018_consen 5 EDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADEKL-----KSIPKAEK- 78 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cccccccc-
Confidence 35677777777766667888889999999999999999999999999999999887654 111111 12222221
Q ss_pred HHHHhhhhhhHHHHHHHHhhhhhcCCCCC
Q 022306 197 QEEVESMQGEMSSFMQIFEGLIKNDSTVN 225 (299)
Q Consensus 197 q~dl~~m~~eIsslm~~fe~lt~n~S~~~ 225 (299)
-.+...-|..+=.+|+++.+.+.
T Consensus 79 ------~~v~~~eLL~YA~rISk~t~~p~ 101 (188)
T PF10018_consen 79 ------RPVDYEELLSYAHRISKFTSAPP 101 (188)
T ss_pred ------CCCCHHHHHHHHHHHHHhcCCCC
Confidence 12235567777789998888743
No 65
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.40 E-value=13 Score=32.09 Aligned_cols=13 Identities=0% Similarity=0.026 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHh
Q 022306 177 AALEKSQWEAMTV 189 (299)
Q Consensus 177 AaLEKlewE~~~s 189 (299)
..++.+.|++...
T Consensus 158 ~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 158 EEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 66
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.24 E-value=4.4 Score=37.54 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 133 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 133 ~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
-.++|+.|.-++-|.+-+++-|+.=|-|+-.||.+++..|..+...+-.++--+-+.+...+..+++|.....|+..|+.
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence 35789999999999999999999999999999999999999999999999988888889999999999999999988877
Q ss_pred HHhhhh
Q 022306 213 IFEGLI 218 (299)
Q Consensus 213 ~fe~lt 218 (299)
.+..+.
T Consensus 88 kl~~le 93 (202)
T PF06818_consen 88 KLGQLE 93 (202)
T ss_pred hhhhhH
Confidence 766544
No 67
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.92 E-value=9.8 Score=37.38 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLESS------------KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~~------------~~em~a~~akvDELr~~laeKe~likStq~QLs 166 (299)
.-|..|+..++.+|.+.+..|...... .++++.++.++..++.++++-++.+.+++.+|.
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446778999999999998888876532 255566666666666666666666666665544
No 68
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.68 E-value=7.4 Score=33.11 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHhHHhhHHHHhhhhHHHHH
Q 022306 131 ESSKSQVNAVHLKLDELKRLAAEKDSLIK-STQLQLSDAKIKLADKQAAL 179 (299)
Q Consensus 131 e~~~~em~a~~akvDELr~~laeKe~lik-Stq~QLsdaki~LadKqAaL 179 (299)
.+....++.++++|+++++.+.+ +.+.+ -++.+|..+++.-|-.+..|
T Consensus 54 ~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 54 ASRNQRIAELQAKIDEARRNLED-EKQAKLELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34457788888888888888877 67777 78888888888766655554
No 69
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.56 E-value=24 Score=37.33 Aligned_cols=104 Identities=22% Similarity=0.337 Sum_probs=68.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH----------Hhh
Q 022306 101 KEIEELVALREQVEDLQRKMFE----KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQL----------QLS 166 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~E----KDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~----------QLs 166 (299)
.-.+|+.+|+.+++.|..+|-. +..+=+-....+..+..+..++.++.....|..+|+..+++ |=+
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 3456788889889888876543 33332222344678888899999999999999999887773 445
Q ss_pred HHHHhhhhHHHHHHHHHHHHH--------------HhhhHHHHHHHHHhhhh
Q 022306 167 DAKIKLADKQAALEKSQWEAM--------------TVSRKAEKLQEEVESMQ 204 (299)
Q Consensus 167 daki~LadKqAaLEKlewE~~--------------~sn~Kve~Lq~dl~~m~ 204 (299)
+-|..|+++|-+.-+|-.+=| .-.+|..+|+++|+.|.
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776665544422 22345556666555554
No 70
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.50 E-value=3.5 Score=40.30 Aligned_cols=66 Identities=30% Similarity=0.411 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 022306 102 EIEELVALREQVEDLQRKM----FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 167 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL----~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsd 167 (299)
..+|+..|..||=+||+++ .|++++..-+..++.-=..+.+.+-+|+..++|=-.++..+|.+|..
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666654 35566666665555555555566666666666655555555555543
No 71
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.45 E-value=19 Score=32.62 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHhHHhhHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA-----------AEKDSLIKSTQLQLSDAKI 170 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~l-----------aeKe~likStq~QLsdaki 170 (299)
=.+-|..++++|++|+++|..=+.--.++..++..+..+..+|..|+.+. .|||.|-.--..=+++.+.
T Consensus 60 L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 60 LSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999997655555678888888888888777776543 5666666666666777777
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 171 KLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 171 ~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
+.+-|...|| +|+..|.+.|..-+.++.....
T Consensus 140 k~~~kn~lLE----------kKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 140 KTGLKNLLLE----------KKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776 4777888888877777765543
No 72
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.96 E-value=19 Score=40.62 Aligned_cols=107 Identities=20% Similarity=0.327 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSK-----------------------------SQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~-----------------------------~em~a~~akvDELr~~la 152 (299)
-++.+..+.+.|..|++++.+..+.|..++++. ..+.-.+.+++++...
T Consensus 226 ~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~k-- 303 (1074)
T KOG0250|consen 226 AKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEK-- 303 (1074)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 456777888899999999999999999887773 1111222222222222
Q ss_pred hhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 153 EKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 153 eKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
|+..+.-..++-.+|-+++|-+..+=-|+-...-.++.+..+|+...-++..|-..+.
T Consensus 304 -----i~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~ 361 (1074)
T KOG0250|consen 304 -----IEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIR 361 (1074)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333444555555566666666555555555555555665555555555544444
No 73
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.02 E-value=6.1 Score=30.77 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=25.8
Q ss_pred HHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 022306 115 DLQRKMFEKDELLKSL----ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 115 eLqkKL~EKDelLkSa----e~~~~em~a~~akvDELr~~laeKe~likStq~QLs 166 (299)
.|.++|.|||+.+.-+ +.+.-.-......|.-||.+..+=+.-|..+...+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~ 57 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLE 57 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666643322 344444444555555555555555544444443333
No 74
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=87.01 E-value=29 Score=36.27 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=64.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH---HHHHHHhhhhhcCCCCCCCCCCCCCcccccccCCCCCCC
Q 022306 171 KLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS---SFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDIDDLD 247 (299)
Q Consensus 171 ~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs---slm~~fe~lt~n~S~~~~~~d~d~~p~~~d~l~~~d~~~ 247 (299)
.+.++...|....-++..-..-++.++..=.-+|.+.. .|+.-+++|-. --+++|-.+..|.. ..++
T Consensus 45 e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~---------~l~i~~~~l~~L~~-~~l~ 114 (701)
T PF09763_consen 45 ECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLD---------TLSIPEEHLEALRN-ASLS 114 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH---------hcCCCHHHHHHHhc-CCCC
Confidence 33333334444333333334444444444445555555 34444445542 22245556666666 4454
Q ss_pred hHH-HHHHHHHHHHHHHHHHHh-----hhcCCHHHHHHHHHHHHhhhhh
Q 022306 248 DVE-MQRMEEAREAYITAVAMA-----KEKQDEESMATAARARLHLQSF 290 (299)
Q Consensus 248 ~~e-~~kmE~aR~aY~aAvaaA-----Kenp~eEsl~~aAeaR~~Lq~f 290 (299)
+.+ ++.+|.|=.+--.|+.+- ...|+-..|.+|.+-|..+..+
T Consensus 115 ~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~ 163 (701)
T PF09763_consen 115 SPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKV 163 (701)
T ss_pred CcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHH
Confidence 444 899998888777787772 5778888999999999887643
No 75
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.85 E-value=19 Score=37.58 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLESS------------KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 165 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae~~------------~~em~a~~akvDELr~~laeKe~likStq~QL 165 (299)
..-|.+|+.+|+++|.+.|..|..-..- ..+|+.++.++-..+.+.++.+....+++.+|
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999998888766542 15666666666655555555555444444333
No 76
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.65 E-value=17 Score=34.97 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHh-hHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhH---HHHHHHHHhhhhhhHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAE-KDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRK---AEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 135 ~em~a~~akvDELr~~lae-Ke~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~K---ve~Lq~dl~~m~~eIssl 210 (299)
-.|..+.+++++++.++.. -..++.+.+..+..+...+++.++.++.++-++..-+.+ ...|+-|++.-+.--..|
T Consensus 282 P~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~l 361 (444)
T TIGR03017 282 PQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAA 361 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555432 234455555555555556666666666665555544333 233444454444444455
Q ss_pred HHHHhh
Q 022306 211 MQIFEG 216 (299)
Q Consensus 211 m~~fe~ 216 (299)
...++.
T Consensus 362 l~r~~e 367 (444)
T TIGR03017 362 MQRYTQ 367 (444)
T ss_pred HHHHHH
Confidence 554443
No 77
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=86.43 E-value=21 Score=31.76 Aligned_cols=93 Identities=14% Similarity=0.226 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH-HHHHHHHhhhHHHHHHHHHh
Q 022306 123 KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK-SQWEAMTVSRKAEKLQEEVE 201 (299)
Q Consensus 123 KDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK-lewE~~~sn~Kve~Lq~dl~ 201 (299)
|+++..-+|....+...+...|++++.++++==.-+-.+...-.-|+..|++--....+ .|-+++.-=.++..+|.+|.
T Consensus 15 K~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~ 94 (159)
T PF05384_consen 15 KEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLA 94 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666777777777777666566666666666677777665555544 46666777777777777777
Q ss_pred hhhhhHHHHHHHHh
Q 022306 202 SMQGEMSSFMQIFE 215 (299)
Q Consensus 202 ~m~~eIsslm~~fe 215 (299)
.++.+-..|+.-=+
T Consensus 95 ~~re~E~qLr~rRD 108 (159)
T PF05384_consen 95 MLREREKQLRERRD 108 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666665443
No 78
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.90 E-value=23 Score=36.31 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 022306 127 LKSLESSKSQVNAVHLKLDELKRLAAEKDSLI 158 (299)
Q Consensus 127 LkSae~~~~em~a~~akvDELr~~laeKe~li 158 (299)
+..+..+..++..+.+.++++...+.++..-.
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~y 378 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAY 378 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 55555555555555555555555555544333
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.85 E-value=32 Score=32.67 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHH--hhhhHHHHHHHHHHHHHH
Q 022306 111 EQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKI--KLADKQAALEKSQWEAMT 188 (299)
Q Consensus 111 eQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki--~LadKqAaLEKlewE~~~ 188 (299)
++.++|++...|++.+.+.++...-++..+..++-.+...+.+=..-++.++..|..++- ++.+.+-.+..++....+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777776666666666666666666655555555555555533221 122222223334444444
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 022306 189 VSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDIDDLDDVEMQRMEEAREAYITAVAMA 268 (299)
Q Consensus 189 sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~~d~l~~~d~~~~~e~~kmE~aR~aY~aAvaaA 268 (299)
-++.+..+.+.+..++.+|..+..-+..+..+-.... .-.+.++.++.+.+..|..=-.--
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~-------------------~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE-------------------ARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555544444444432211111 112455666666666666555555
Q ss_pred hhcCCHHHHHHHHHHHH
Q 022306 269 KEKQDEESMATAARARL 285 (299)
Q Consensus 269 Kenp~eEsl~~aAeaR~ 285 (299)
++.-+.+.|..=-.-|+
T Consensus 169 ~~~l~~ell~~yeri~~ 185 (239)
T COG1579 169 KEKLDPELLSEYERIRK 185 (239)
T ss_pred HHhcCHHHHHHHHHHHh
Confidence 55555555554444333
No 80
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.81 E-value=31 Score=40.13 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLES 132 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~ 132 (299)
.||....+.+..+..++|.+++.-|..++.
T Consensus 285 iEEAag~r~rk~eA~kkLe~tE~nL~rI~d 314 (1486)
T PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMAR 314 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555666665555554443
No 81
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=85.78 E-value=27 Score=31.67 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=47.3
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhc
Q 022306 163 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 220 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n 220 (299)
..+..+...|.-|++.++||++.- ...|++.++.||...+.-......-|+.|+++
T Consensus 123 ~~~q~a~~~l~kkr~~~~Kl~~~~--~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~ 178 (224)
T cd07623 123 QNWQNAQQTLTKKREAKAKLELSG--RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKT 178 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788899999999998754 35799999999999999999999999999843
No 82
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=85.72 E-value=24 Score=30.91 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=55.2
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcC
Q 022306 161 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 221 (299)
Q Consensus 161 tq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~ 221 (299)
.+.++..+...|.-|++.++|+.+.-..+..|++.++.++..++.-+..+..-|+.|+++.
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~ 193 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENI 193 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999998888899999999999999999999999999999653
No 83
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.70 E-value=54 Score=37.33 Aligned_cols=117 Identities=23% Similarity=0.323 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSK---------------------------------SQVNAVHLKLDELK 148 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~---------------------------------~em~a~~akvDELr 148 (299)
+.+.+...+-|++.-|+.|..=+..|++++... .++..+...|.|++
T Consensus 675 ~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~ 754 (1174)
T KOG0933|consen 675 QLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESE 754 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHH
Confidence 344777777777777777777777777777663 66677777888888
Q ss_pred HHHHhhHHHHHHHhHHhhHHHHh-----------hhhHHHHHHHHHH-------HHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 149 RLAAEKDSLIKSTQLQLSDAKIK-----------LADKQAALEKSQW-------EAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 149 ~~laeKe~likStq~QLsdaki~-----------LadKqAaLEKlew-------E~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
.++-+++..++..+...+.-..+ |.|.+.-+..+.. +...+..=++.|+.+.+.|..+|++.
T Consensus 755 ~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~ 834 (1174)
T KOG0933|consen 755 QQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSL 834 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877766433222 2222222222222 22222333456777777777777777
Q ss_pred HHHHhhhh
Q 022306 211 MQIFEGLI 218 (299)
Q Consensus 211 m~~fe~lt 218 (299)
..+++.+.
T Consensus 835 k~~l~~~~ 842 (1174)
T KOG0933|consen 835 KQQLEQLE 842 (1174)
T ss_pred HHHHHHHH
Confidence 77666443
No 84
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=85.68 E-value=32 Score=38.52 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHH--------------HhhhHHHHHHHHHhhhhhhHHHHH
Q 022306 156 SLIKSTQLQLSDAKIKLADKQAALEKSQWEAM--------------TVSRKAEKLQEEVESMQGEMSSFM 211 (299)
Q Consensus 156 ~likStq~QLsdaki~LadKqAaLEKlewE~~--------------~sn~Kve~Lq~dl~~m~~eIsslm 211 (299)
.-|...|++|.++++.|.+-.+-|++++-|+- -++.+..++..++..+-.|++.+-
T Consensus 127 ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en 196 (1265)
T KOG0976|consen 127 DTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREK 196 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777776653 344455555555555555555443
No 85
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=85.56 E-value=27 Score=33.70 Aligned_cols=104 Identities=12% Similarity=0.188 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhHHHHHH-----------H
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLESS-------------KSQVNAVHLKLDELKRLAAEKDSLIKS-----------T 161 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae~~-------------~~em~a~~akvDELr~~laeKe~likS-----------t 161 (299)
+.-|.+|+..++++|.+-+..|..-... ..+++.++.++-..+.++.+-..-... .
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIA 252 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhc
Confidence 4568899999999999999888875543 244555555555555444332221110 0
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 022306 162 QLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 209 (299)
Q Consensus 162 q~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIss 209 (299)
+..+.+.+..|++.++-+..+.--.-..+-+|-.++..+..++.+|..
T Consensus 253 ~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 253 NPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 111223333333333333333222334445555666666665555543
No 86
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=85.44 E-value=21 Score=29.96 Aligned_cols=105 Identities=22% Similarity=0.226 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl 182 (299)
..++..|..+...|-...++++.- ++..++++...+..+..|+.++.+|..-.+...... +-.+.+.+|
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~---l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~--------s~~~l~~~L 101 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPE---LEELRSQLQELYEELKELESEYQEKEQQQDELSSNY--------SPDALLARL 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------CHHHHHHHH
Confidence 344555555555555555555433 333445555666666666666666655444332222 234667778
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 183 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 183 ewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+-.+.......+.|-+..-.=..++..|-..|....
T Consensus 102 ~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~R 137 (150)
T PF07200_consen 102 QAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEKR 137 (150)
T ss_dssp HHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 888888888888885554433445667777776544
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.39 E-value=18 Score=33.13 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH
Q 022306 104 EELVALREQVEDLQRKMF-EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ 176 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~-EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq 176 (299)
.|+..|+.+++++....- ++.++=.++..+...++.+.++-++|+.++.. ++.++..++.++.+.+
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~-------~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV-------AQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 467777777776665533 23344444555556666666666666665554 4444444444444443
No 88
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.37 E-value=35 Score=36.26 Aligned_cols=100 Identities=23% Similarity=0.302 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESS----------------------------KSQVNAVHLKLDELKRLAAEKDSLIKS 160 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~----------------------------~~em~a~~akvDELr~~laeKe~likS 160 (299)
+-.+|++|+++..+=.+.+.+++-. +..+-..-.+|..|+.++.+|+.-|+.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~ 312 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK 312 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778887777766666655543 133344556788999999999999999
Q ss_pred HhHHhhHHHHhhh----------hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 161 TQLQLSDAKIKLA----------DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 161 tq~QLsdaki~La----------dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
+|.+-.+-|..+- .|.+-.++|++++-.-+.+.+.|+.++-...-+|.
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~ 370 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE 370 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9998887765543 46677788888888888888888888877777665
No 89
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=85.01 E-value=19 Score=32.69 Aligned_cols=87 Identities=17% Similarity=0.228 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHH---------hhhHHHHHHHH
Q 022306 129 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMT---------VSRKAEKLQEE 199 (299)
Q Consensus 129 Sae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~---------sn~Kve~Lq~d 199 (299)
+++.+..+++...+.+-++...+++-.+.+.+.+.....+...+.+-...+..+...+.. +.-....|+.+
T Consensus 79 s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae 158 (240)
T PF12795_consen 79 SLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAE 158 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHH
Confidence 445556777777778888888888888888777777777777777777777777766554 34455566666
Q ss_pred HhhhhhhHHHHHHHHh
Q 022306 200 VESMQGEMSSFMQIFE 215 (299)
Q Consensus 200 l~~m~~eIsslm~~fe 215 (299)
+..+..+|.-+...+.
T Consensus 159 ~~~l~~~~~~le~el~ 174 (240)
T PF12795_consen 159 LAALEAQIEMLEQELL 174 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665554444
No 90
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.95 E-value=30 Score=38.72 Aligned_cols=102 Identities=20% Similarity=0.363 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH-H
Q 022306 108 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE-A 186 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE-~ 186 (299)
.|+++++.+...|.......+. ...++...+.++++++.++.....-++..+..+...+......+..++..--+ .
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~---~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEE---LEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777665555433 34455566777777777777777777777666666666555555444442222 2
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 187 MTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 187 ~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
....+++..++.++..+..++..+..
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~~ 706 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELLE 706 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554433
No 91
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.83 E-value=22 Score=37.47 Aligned_cols=34 Identities=32% Similarity=0.449 Sum_probs=26.2
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022306 101 KEIEELVALREQVEDLQRKMFEKDELLKSLESSK 134 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~ 134 (299)
..-.|+..|++||++|...+.+-+.-++.+....
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~ 358 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSL 358 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566889999999999988887777777666554
No 92
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.25 E-value=47 Score=37.19 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
-+.......+|++.++..+.+..|.-.+-+.+.+.-|.-+.--+||.++.|....-.++++||..+++....=...-..|
T Consensus 452 kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l 531 (980)
T KOG0980|consen 452 KQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQL 531 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44455555667777777788888888888888888888888889999999999999999999999777655444333333
Q ss_pred h
Q 022306 215 E 215 (299)
Q Consensus 215 e 215 (299)
+
T Consensus 532 ~ 532 (980)
T KOG0980|consen 532 E 532 (980)
T ss_pred H
Confidence 3
No 93
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=84.20 E-value=22 Score=40.25 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=69.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH-----hhH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQV---------------------NAVHLKLDELKRLAA-----EKD 155 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em---------------------~a~~akvDELr~~la-----eKe 155 (299)
=..+++.|++.|--|+..|-||-+.|.-+++-..+| ..-..++|.++.+.. =|+
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence 456999999999999999999999998877664222 222334455554432 145
Q ss_pred HHHHH--HhHHhhHHH----HhhhhHHHHHHHH------------HHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 156 SLIKS--TQLQLSDAK----IKLADKQAALEKS------------QWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 156 ~likS--tq~QLsdak----i~LadKqAaLEKl------------ewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
++..| .-.++-+++ +-|+.|+-+=|+| |-|+.+=+.|...|+.+.+..|-++.
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kte 325 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTE 325 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 55555 445554444 4477777665554 45677777788887777665554443
No 94
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.09 E-value=19 Score=34.65 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=17.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhhh
Q 022306 195 KLQEEVESMQGEMSSFMQIFEGLIK 219 (299)
Q Consensus 195 ~Lq~dl~~m~~eIsslm~~fe~lt~ 219 (299)
.++.+.+++..++......++.|.+
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556667777777777777777773
No 95
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=84.00 E-value=40 Score=32.08 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESS------KSQVNAVHLKLDELKRLAAEKDSLIKSTQ 162 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~------~~em~a~~akvDELr~~laeKe~likStq 162 (299)
+-+.-|++||+.++++|.+-+..|..-... ..+..+....+.+|+.++++-+.-+..+.
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888999999988888777765553 12333444445555555555544444333
No 96
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=83.88 E-value=33 Score=37.73 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHH---------HHhhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022306 103 IEELVALREQVEDLQR---------KMFEKDELLKSLESS-----------KSQVNAVHLKLDELKRLAAEKDSLIKSTQ 162 (299)
Q Consensus 103 ~eEl~~LreQVeeLqk---------KL~EKDelLkSae~~-----------~~em~a~~akvDELr~~laeKe~likStq 162 (299)
..|--+||-++.-|++ .|.||||++.-+-.- .+.|.-|.||+-+--..++.+--+|.-++
T Consensus 422 ~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~ 501 (961)
T KOG4673|consen 422 TKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQ 501 (961)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHH
Confidence 3466677777764443 566799988765322 37788899999988888888889999999
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHh-hhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 163 LQLSDAKIKLADKQAALEKSQWEAMTV-SRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEKlewE~~~s-n~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
+++.--|.-|++|.+ .||+..|.... +--+.+-..+++..+..|..|.....
T Consensus 502 sE~~~lk~il~~Kee-~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~ 554 (961)
T KOG4673|consen 502 SEENKLKSILRDKEE-TEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL 554 (961)
T ss_pred HHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999999999975 57777765432 22233333344444444444443333
No 97
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.68 E-value=25 Score=36.50 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ 176 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq 176 (299)
-+.++..+.+++++|.++|..-+.- ..+.....+++.+..++++++.++.....-|+....++...+..+...+
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~~~-e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIPSE-EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666542110 1334444555556666666666666655555555555555555444433
No 98
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.62 E-value=31 Score=33.21 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=58.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 022306 101 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLE 180 (299)
...+++..+.++++.|++ |.+++++.++.+..+-..+.+.+..|..+..+.+......-.+....+..+.+.+-.++
T Consensus 40 ~~~~~~~~~~~el~~le~---Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQ---EEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD 116 (314)
T ss_dssp --HH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777665 45566666666666777777777777777777666666666666666666666666666
Q ss_pred HHHHHHHHhhhHHHHHH
Q 022306 181 KSQWEAMTVSRKAEKLQ 197 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq 197 (299)
.++-..-..+...++|+
T Consensus 117 sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 117 SLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555555555555555
No 99
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.20 E-value=53 Score=38.29 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQ-------VNAVHLKLDELKRLA 151 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~e-------m~a~~akvDELr~~l 151 (299)
..+|...|-|++-..+ .+|.++++.++..... +..+..++..|++++
T Consensus 277 ~~eERR~liEEAag~r---~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQa 330 (1486)
T PRK04863 277 HANERRVHLEEALELR---RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDY 330 (1486)
T ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888886666 4555555555555433 334444444444443
No 100
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.05 E-value=37 Score=31.02 Aligned_cols=107 Identities=12% Similarity=0.228 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH----HHHHHHH
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA----ALEKSQW 184 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqA----aLEKlew 184 (299)
.+++|+.+. .||..++...+.+..++..+....+.+.++++.-+.-|.+++.|+.+......+.-. ++..|+-
T Consensus 40 sQ~~id~~~---~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 40 SQKRIDQWD---DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 367888888888888888888888888888888888888888888888766655554 4444544
Q ss_pred HHH--------HhhhHHHHHHHHHhhhhhhHH-HHHHHHhhhh
Q 022306 185 EAM--------TVSRKAEKLQEEVESMQGEMS-SFMQIFEGLI 218 (299)
Q Consensus 185 E~~--------~sn~Kve~Lq~dl~~m~~eIs-slm~~fe~lt 218 (299)
-|. .+-..++.|..-|+.-+.-.+ .|+.+|+-+.
T Consensus 117 ~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~ 159 (251)
T PF11932_consen 117 FVELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEAYQ 159 (251)
T ss_pred HHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 222 355677888888877766666 6777777444
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.79 E-value=43 Score=32.95 Aligned_cols=115 Identities=24% Similarity=0.301 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHH---HHHhhH
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSK-------------------------SQVNAVHLKLDELKR---LAAEKD 155 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~-------------------------~em~a~~akvDELr~---~laeKe 155 (299)
++|..-.++|..|+-.|.-||+||+-.-+.. -.+.+++.|+-.|.. +|..--
T Consensus 104 ~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea 183 (306)
T PF04849_consen 104 EQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEA 183 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788889999999999999987654331 123344444332221 111111
Q ss_pred HHHHHHhHHhhHHHHhh--------hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 156 SLIKSTQLQLSDAKIKL--------ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 156 ~likStq~QLsdaki~L--------adKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.-++..-.++.+...+| ++-..-+.-|.-|+.....=....|+++.++..+|-.+..-+..++
T Consensus 184 ~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~ 254 (306)
T PF04849_consen 184 SQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA 254 (306)
T ss_pred HHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111111122222222 1122223345556666666666777777777777777777777666
No 102
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.63 E-value=38 Score=34.80 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 137 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 137 m~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
+..+..++.++...+.+-..-|..-....+..+..+.+...-|+.++-+-+.-...+..|+.+-...+..+..|...+..
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444343444444444555555555555555555555555555555555544444444444444443
Q ss_pred h
Q 022306 217 L 217 (299)
Q Consensus 217 l 217 (299)
+
T Consensus 430 i 430 (569)
T PRK04778 430 I 430 (569)
T ss_pred H
Confidence 3
No 103
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.27 E-value=16 Score=31.39 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=11.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHh
Q 022306 101 KEIEELVALREQVEDLQRKMF 121 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~ 121 (299)
.+.+|+..|..+|.+|+.+|.
T Consensus 69 ~s~eel~~ld~ei~~L~~el~ 89 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELA 89 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHH
Confidence 345556666555555555543
No 104
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=82.19 E-value=16 Score=31.95 Aligned_cols=114 Identities=17% Similarity=0.248 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK 181 (299)
.+..+-.+.++++.|+.+|-+-+.-|+.++.....+..|+++|++|+..+....- -+++++.=-.+..||+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~--------~~e~~l~~~~~~~ai~~ 89 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKE--------EYEAKLAQMKKDSAIKS 89 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 3456667788999999999999999999999888899999999999988864332 22223322334566666
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhh---HHHHHHHHhhhhhcCCC
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGE---MSSFMQIFEGLIKNDST 223 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~e---Isslm~~fe~lt~n~S~ 223 (299)
.=..+.-.|.|+-.-.-|++.+.+. |.-|-.++..|-+++.-
T Consensus 90 al~~akakn~~av~allD~d~l~l~~dg~~Gldeqi~~lkes~~y 134 (155)
T PF06810_consen 90 ALKGAKAKNPKAVKALLDLDKLKLDDDGLKGLDEQIKALKESDPY 134 (155)
T ss_pred HHHHcCCCCHHHHHHhcCHHHeeeCCCccccHHHHHHHHHhcCch
Confidence 6666666777665555555555322 44566666666655543
No 105
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=81.77 E-value=55 Score=34.02 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl 182 (299)
.+..|+.++..++.+|.+-+.-|..+.. ..++..+..+++++.+.+.+-..-+...+.++...+..+...+.-+.++
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~~~-~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTIPS-EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444444443321 2466777777777777777776667777666666666666666555554
No 106
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=81.76 E-value=43 Score=35.93 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=23.9
Q ss_pred HHHHHHHhhHHHHH----HHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 146 ELKRLAAEKDSLIK----STQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 146 ELr~~laeKe~lik----Stq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
++-++.++++..++ .+|.|+..+.-+.-.+|.+++..+.+.
T Consensus 175 ~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el 219 (629)
T KOG0963|consen 175 KLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNEL 219 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44455666666554 345666666666666666666655443
No 107
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=81.02 E-value=43 Score=30.39 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 143 KLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 143 kvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
..+.+..++.+++..-...-..+.+-+.++-+.|.....+--+-......+.+|+.+++.+..+|......|+.+.
T Consensus 111 ~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 111 ERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444443333333333333333333333332222222223336678888888888888888888888776
No 108
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.98 E-value=53 Score=33.98 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=23.9
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 022306 99 SEKEIEELVALREQVEDLQRKMFEKDELLKSL 130 (299)
Q Consensus 99 ~~k~~eEl~~LreQVeeLqkKL~EKDelLkSa 130 (299)
...+-+|+-.|.++|++|+++|.+=--...++
T Consensus 168 ~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l 199 (446)
T KOG4438|consen 168 VEEDEEEVKQLEENIEELNQSLLKDFNQQMSL 199 (446)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999999999988644444444
No 109
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=80.93 E-value=42 Score=30.16 Aligned_cols=60 Identities=25% Similarity=0.230 Sum_probs=50.5
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcC
Q 022306 162 QLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 221 (299)
Q Consensus 162 q~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~ 221 (299)
+..+..+...|.-+++.++||.+--.+...|+..++.+|...+..+.....-|+.|+++.
T Consensus 114 ~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~ 173 (216)
T cd07627 114 WQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELI 173 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888899999999999874344578999999999999999999999999999553
No 110
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=80.76 E-value=48 Score=31.51 Aligned_cols=66 Identities=12% Similarity=0.279 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 022306 102 EIEELVALREQVEDLQRKMFE-------------KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 167 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~E-------------KDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsd 167 (299)
-.+++..++.+++..+.+|.+ -......+..+..++..+..++.+++.-..+.---++.++.|+..
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHH
Confidence 345556666666666555543 111233333444455555555555544444433333333333333
No 111
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=80.52 E-value=30 Score=38.69 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 022306 109 LREQVEDLQRKMFEKDELLKS 129 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkS 129 (299)
||..-+.|+..|.+|-.+=.|
T Consensus 53 lrserdalhe~lvdkaglneS 73 (1265)
T KOG0976|consen 53 LRSERDALHESLVDKAGLNES 73 (1265)
T ss_pred HHhhHHHHHHHHHHHhhccch
Confidence 344444555555555444443
No 112
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=80.42 E-value=8.5 Score=38.07 Aligned_cols=77 Identities=27% Similarity=0.375 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHH---HHHHHHHhhh---HHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 022306 102 EIEELVALREQV---EDLQRKMFEK---DELLKSLESS---------------KSQVNAVHLKLDELKRLAAEKDSLIKS 160 (299)
Q Consensus 102 ~~eEl~~LreQV---eeLqkKL~EK---DelLkSae~~---------------~~em~a~~akvDELr~~laeKe~likS 160 (299)
.+++-..|++-| |.+++||.|+ +-+|..+... -.++-.++.+|++|+++|.+.+..+++
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~ 200 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEI 200 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455656666655 7899999999 3477766544 278999999999999999999999998
Q ss_pred HhHHhhHHHHhhhhHHHHHHHH
Q 022306 161 TQLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 161 tq~QLsdaki~LadKqAaLEKl 182 (299)
++--|.=|+- |.+.||.|
T Consensus 201 ~~k~L~faqe----kn~Llqsl 218 (323)
T PF08537_consen 201 TKKDLKFAQE----KNALLQSL 218 (323)
T ss_pred HHHHHHHHHH----HHHHHHHH
Confidence 8888877764 44444443
No 113
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=80.35 E-value=47 Score=30.41 Aligned_cols=66 Identities=23% Similarity=0.258 Sum_probs=47.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 134 KSQVNAVHLK-LDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 134 ~~em~a~~ak-vDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
..++..-|+. +++|+.++.+++..+..++.+|.. |.+-+.-=++.++|+ ..|+.++..++.+.+.-
T Consensus 38 r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~----l~~~~~~k~~qe~eI-------~~Le~e~~~~~~e~~~~ 104 (206)
T PF14988_consen 38 RQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQA----LKEFRRLKEQQEREI-------QTLEEELEKMRAEHAEK 104 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 4555555554 999999999999999999999865 555555556667665 45777777777776643
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=80.21 E-value=60 Score=31.54 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhH
Q 022306 102 EIEELVALREQVEDLQRKMFEKD 124 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKD 124 (299)
|..-|..-.+.|+++.-+|.+|-
T Consensus 159 D~~~L~~~~~~l~~~~~~l~~~~ 181 (312)
T smart00787 159 DYKLLMKELELLNSIKPKLRDRK 181 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555443
No 115
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=79.53 E-value=1e+02 Score=33.69 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=24.0
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 95 RALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 95 ~~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
.++.++.+--|+..|..|+.-+- .||-.|+.+++.+
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve---~EK~~L~~~L~e~ 291 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVE---REKSSLLSNLQES 291 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHh---hHHHHHHHHHHHH
Confidence 46777777778888877765553 4666666665554
No 116
>PF15456 Uds1: Up-regulated During Septation
Probab=79.43 E-value=30 Score=29.59 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 177 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 177 AaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
-.+.+.+-|...++.||+++..+|..++.-...++.
T Consensus 74 ~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~ 109 (124)
T PF15456_consen 74 ESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQ 109 (124)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999988876654
No 117
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=79.39 E-value=74 Score=38.09 Aligned_cols=110 Identities=25% Similarity=0.386 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH---
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVN-AVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA--- 177 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~-a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqA--- 177 (299)
|..++..|...|..|+.+|.+|+-+...+..--+++. .++.++|++..+.+.+..-|+ ||-++++.|+.+.-
T Consensus 1305 d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~----ql~~~~~rL~~~~~e~~ 1380 (1822)
T KOG4674|consen 1305 DKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELE----QLEDLKTRLAAALSEKN 1380 (1822)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999998888765554 667777777777666655554 34444444443322
Q ss_pred --------HHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 178 --------ALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 178 --------aLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
+.....-.-=..+.|.+++-.++. +-+||.++...+..
T Consensus 1381 ~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~-~~~e~~sl~eeL~e 1426 (1822)
T KOG4674|consen 1381 AQELELSDKKKAHELMQEDTSRKLEKLKEKLE-LSEELESLKEELEE 1426 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 111111111134455555555554 44666666665543
No 118
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.37 E-value=14 Score=28.68 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022306 105 ELVALREQVEDLQRKM-----------FEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 105 El~~LreQVeeLqkKL-----------~EKDelLkSae~~~~em~a~~akvDELr~~lae 153 (299)
++.+||+.++-+-+|+ .|.|.++.++.....++..+.++++.|++++.+
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776666665 466777777777777777777777777777544
No 119
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.10 E-value=55 Score=32.36 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=9.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHh
Q 022306 195 KLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 195 ~Lq~dl~~m~~eIsslm~~fe 215 (299)
..+.+++..+.++..+...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 120
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=78.82 E-value=31 Score=33.94 Aligned_cols=85 Identities=15% Similarity=0.274 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH-------------HHHhh----hhHHHHHHHHHHHH
Q 022306 124 DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD-------------AKIKL----ADKQAALEKSQWEA 186 (299)
Q Consensus 124 DelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsd-------------aki~L----adKqAaLEKlewE~ 186 (299)
.+|=-.+.....+|..+...|+.|++-+.+|+..++-+|.-|.. ++..| .+.+..+.+|+--+
T Consensus 261 ~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L 340 (384)
T PF03148_consen 261 NELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKL 340 (384)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344456777777777777777788887777777766643 33333 45566666677777
Q ss_pred HHhhhHHHHHHHHHhhhhhhHH
Q 022306 187 MTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 187 ~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
..+..-...|..-...++.+|.
T Consensus 341 ~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 341 DEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777766
No 121
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.71 E-value=80 Score=35.94 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 189 VSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 189 sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
-..+++.||.||..+.--|-.|-.=++-|-
T Consensus 323 AEERaesLQ~eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 323 AEERAESLQQEVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777666666666665555443
No 122
>PRK11519 tyrosine kinase; Provisional
Probab=78.47 E-value=63 Score=34.16 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESS------KSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~------~~em~a~~akvDELr~~lae 153 (299)
=+.-|.+|+.+|+++|.+.|..|..-... ..+..++..++.+++.++++
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~ 322 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNE 322 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999998876653 23334444444444444443
No 123
>PRK12704 phosphodiesterase; Provisional
Probab=77.93 E-value=66 Score=33.26 Aligned_cols=44 Identities=27% Similarity=0.288 Sum_probs=20.4
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 165 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
|....-.|..+...|++.+.++-.....++..+.+|+.++.++.
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~ 134 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444443
No 124
>PF13514 AAA_27: AAA domain
Probab=77.80 E-value=70 Score=35.44 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEK-------DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIK 159 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EK-------DelLkSae~~~~em~a~~akvDELr~~laeKe~lik 159 (299)
.+..+..++++++++|.+. ..+.+.++....++..+..++.+++.+...-+.++.
T Consensus 151 ~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~ 212 (1111)
T PF13514_consen 151 EINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRR 212 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544 456666666677777777777777777776666543
No 125
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=77.58 E-value=34 Score=34.46 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=26.3
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022306 98 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSK 134 (299)
Q Consensus 98 ~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~ 134 (299)
..+...+++..|+.||..|+.++..=..-+..++...
T Consensus 65 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 65 TSRPDPERLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777999999999999988776655444444443
No 126
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=77.46 E-value=15 Score=42.34 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 185 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE 185 (299)
+.++.+.++++++||.|=-.+|-....+...+..+-.++.+||++|-+=---+--+..-|+|-...+-.-+-.||-||+|
T Consensus 1196 ~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1196 LGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred chhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 34677888888888888888887777777777777778888887764322222222333444444444444556666666
Q ss_pred HHHhhhHHHHHHHHHhh
Q 022306 186 AMTVSRKAEKLQEEVES 202 (299)
Q Consensus 186 ~~~sn~Kve~Lq~dl~~ 202 (299)
+-.-++-+.+|.+.++-
T Consensus 1276 ~~~l~~~~keL~e~~~~ 1292 (1758)
T KOG0994|consen 1276 FNGLLTTYKELREQLEK 1292 (1758)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 65555555555555443
No 127
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=77.31 E-value=54 Score=29.38 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=38.6
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022306 120 MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEE 199 (299)
Q Consensus 120 L~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~d 199 (299)
+--|+++++--.....+++.-...+..+.+.+..|+..+..-..+|...+-. |++.+-++......++....+
T Consensus 56 ~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~-------l~~~~~~l~~~~~~l~~~~~e 128 (201)
T PF12072_consen 56 LEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEE-------LEKKEEELEQRKEELEEREEE 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555665555555555555555555554444444444444 444444444444444444444
Q ss_pred Hhhh
Q 022306 200 VESM 203 (299)
Q Consensus 200 l~~m 203 (299)
+..+
T Consensus 129 ~~~~ 132 (201)
T PF12072_consen 129 LEEL 132 (201)
T ss_pred HHHH
Confidence 4443
No 128
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=77.28 E-value=48 Score=28.75 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHh
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESS-----------KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIK 171 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~-----------~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~ 171 (299)
--+--.|+-+...|..|+-||..=|.-+... +..+..+...+..++.++.+++..+.....+|..++..
T Consensus 41 ~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~ 120 (177)
T PF13870_consen 41 LIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKE 120 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888999999998877666654 47788888999999999999999999999999999998
Q ss_pred hhhHHHHHHHHH--HHHHHhhhH---HHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 172 LADKQAALEKSQ--WEAMTVSRK---AEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 172 LadKqAaLEKle--wE~~~sn~K---ve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
...-.....+|. ++.+....= -+...+++..++..|..+...++-++
T Consensus 121 r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 121 RDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777754 444332211 22334445555555555555555443
No 129
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=77.23 E-value=8.2 Score=39.89 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=47.6
Q ss_pred HHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 160 STQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 160 Stq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
--|+-|.+.+.++.+.+.-|++|+-|+-+.+++..++|..|..++.||..|..+++.+.
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44566777777888888888888888877788888999999999999999998886443
No 130
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.22 E-value=12 Score=36.47 Aligned_cols=51 Identities=22% Similarity=0.388 Sum_probs=35.7
Q ss_pred cCCCCCCCCCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 022306 77 GKNANSNQDSDSFSIFSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKS 129 (299)
Q Consensus 77 ~k~~~~~q~~en~s~~~s~~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkS 129 (299)
.+.+.++.|++.|.-+.++++..-.. -+..|.|.|--|++-|.+||-++=.
T Consensus 200 ~~~~~n~~NG~~f~P~~D~~~~dh~V--~i~~lkeeia~Lkk~L~qkdq~ile 250 (305)
T KOG3990|consen 200 PPLVPNNENGDGFPPFGDRDPGDHMV--KIQKLKEEIARLKKLLHQKDQLILE 250 (305)
T ss_pred CCccCCCCCCCcCCCCCCCCCcchHH--HHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 34455666777777666555544433 5778889999999999999987643
No 131
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=77.10 E-value=95 Score=37.27 Aligned_cols=112 Identities=21% Similarity=0.344 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLES------------------SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQ 164 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~------------------~~~em~a~~akvDELr~~laeKe~likStq~Q 164 (299)
++=+.-|++++..|++.+-..-.-|...+. ++.+|..|.+.-..|...+...+..+.-+-.+
T Consensus 653 ~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~e 732 (1822)
T KOG4674|consen 653 RENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQE 732 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666655554444443333 33444444444445555555555555555555
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 165 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
|+-++.+++--.+-|+.|--|=...-.=-.+|..+++.+-.+..+||..+
T Consensus 733 L~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l 782 (1822)
T KOG4674|consen 733 LLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLL 782 (1822)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444444322211111112344555555555555444433
No 132
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=77.01 E-value=77 Score=35.65 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=8.7
Q ss_pred hhHHHHhhhhHHHHHHHHHHHH
Q 022306 165 LSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~ 186 (299)
+++.+..+.+.+..+..+.-++
T Consensus 825 ~~~~~~~~~~l~~~~~~~~~~~ 846 (1201)
T PF12128_consen 825 LRDLEQELQELEQELNQLQKEV 846 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444343333333
No 133
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=77.00 E-value=7.8 Score=38.94 Aligned_cols=162 Identities=24% Similarity=0.248 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH--------
Q 022306 108 ALREQVEDLQRKMFEKDELLK-----------SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA-------- 168 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelLk-----------Sae~~~~em~a~~akvDELr~~laeKe~likStq~QLsda-------- 168 (299)
.|-=||+-|+.-|.|||+-|- .++-.+--+.+|+.++.||+..|.-+|-||+-.++-+-..
T Consensus 144 nl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee~Gl~~I~~~t~~g~~s 223 (405)
T KOG2010|consen 144 NLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEEHGLVIIPDGTPNGDVS 223 (405)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCeEeccCCCCCcccc
Confidence 345588999999999998873 2333356678999999999999999999998754332100
Q ss_pred ------HHhhhhHHHHHHHHHH----HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCccccc
Q 022306 169 ------KIKLADKQAALEKSQW----EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSD 238 (299)
Q Consensus 169 ------ki~LadKqAaLEKlew----E~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~~d 238 (299)
-|..+ -+.+-+-++. ++-. ...+|-+.++.++.+|-.+.++++.-. ...+..|.+|-.+.
T Consensus 224 ~~~v~g~I~~~-~~~a~~~te~~~~~~~~~---~~~~lag~~e~~~sqi~~~~~q~e~~r------~~~~~~d~t~~~l~ 293 (405)
T KOG2010|consen 224 HEPVAGAITVV-SQEAAQVLESAGEGPLDV---RLRKLAGEKEELLSQIRKLKLQLEEER------QKCSRNDGTVGDLA 293 (405)
T ss_pred cCccccceeec-chhHHHHHHHhccCCCch---hhhhhhhhHHHHHHHHHHHHHHHHHHH------hccCcccCCCCCCc
Confidence 00000 0111111111 1111 122555667777777877777766443 11123345666666
Q ss_pred ccCCCCCCChHHHHHHHHHH--HHHHHHHHHhhhcCCHHHHHHHHH
Q 022306 239 YLSDIDDLDDVEMQRMEEAR--EAYITAVAMAKEKQDEESMATAAR 282 (299)
Q Consensus 239 ~l~~~d~~~~~e~~kmE~aR--~aY~aAvaaAKenp~eEsl~~aAe 282 (299)
+++-.|+++.+.+.+ ...| .-|..-|+ +...+--++.-++.
T Consensus 294 ~~~n~sdl~~~~~~~-da~rq~~eq~g~v~--~~~~d~t~~~d~~~ 336 (405)
T KOG2010|consen 294 GLQNGSDLQFIEMQR-DANRQISEYKFKLS--KAEQDITTLEQSIS 336 (405)
T ss_pred cccchhHHHHHHHHH-HHHHHHHHhhhhhh--hhhccchhHHHHHH
Confidence 777777777666655 2333 33444444 67777666655543
No 134
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=76.90 E-value=63 Score=35.36 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhhhhH
Q 022306 275 ESMATAARARLHLQSFV 291 (299)
Q Consensus 275 Esl~~aAeaR~~Lq~fv 291 (299)
||=..-+..-.||+++-
T Consensus 744 ECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 744 ECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45555556667777753
No 135
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.69 E-value=65 Score=30.02 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=28.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 170 IKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 170 i~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
..+.+.++-+.+|+-++-....=++.|+.++...+-..-
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777877777788888888888887777544
No 136
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=76.52 E-value=5.3 Score=33.10 Aligned_cols=70 Identities=26% Similarity=0.387 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ 176 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq 176 (299)
+...+...|++|-..|++ ++=+-+..-.-+-..+..+++.|.+++.|++.+|.+.|.||.+-|..+..+.
T Consensus 16 ~~~~ie~ElEeLTasLFe--EAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 16 EKEQIESELEELTASLFE--EANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344566666777666653 3333333333444566689999999999999999999999999888776643
No 137
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=76.47 E-value=19 Score=33.60 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=60.5
Q ss_pred HHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcC
Q 022306 151 AAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 221 (299)
Q Consensus 151 laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~ 221 (299)
+-.+.+.++.+++||.+-..+.+.++-..|+....-=.+....+.|...+++++-++-+++..+.++.+|+
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~d 146 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETD 146 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 35688999999999999999999999999998888777888888888888888888888888888777443
No 138
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=76.44 E-value=22 Score=33.23 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHH
Q 022306 133 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMT 188 (299)
Q Consensus 133 ~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~ 188 (299)
..|++.- |..|+.||+.+.+.|.-+..+...+.+||....+..+.--..|+|+..
T Consensus 24 ~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~ 78 (207)
T PF05546_consen 24 ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNE 78 (207)
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 899999999999999999999999999999999999888888888864
No 139
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.43 E-value=1.2e+02 Score=33.10 Aligned_cols=65 Identities=26% Similarity=0.333 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 209 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIss 209 (299)
+++++.+.++-+|++.+..|..-...+-.++ -.++-+++|++|-.+.++..+-..+...+-+|--
T Consensus 133 n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~----------dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~ 197 (716)
T KOG4593|consen 133 NQCQANLKKELELLREKEDKLAELGTLRNKL----------DSSLSELQWEVMLQEMRAKRLHSELQNEEKELDR 197 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444433322222111 2356679999999999999998888887776653
No 140
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=76.38 E-value=0.82 Score=47.70 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH----------HHhHHhhHHHHhhhhHHHHHHHHHHHHHHh-hhHHHHHHHHHhh
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIK----------STQLQLSDAKIKLADKQAALEKSQWEAMTV-SRKAEKLQEEVES 202 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~lik----------Stq~QLsdaki~LadKqAaLEKlewE~~~s-n~Kve~Lq~dl~~ 202 (299)
..++..++.+|+++++.+.+-..... -...+|++++-.+..++..++.++-++..+ +.|+..|+..|..
T Consensus 508 ~~~~~~lq~qle~lq~~l~~~~~~~~d~~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~ 587 (713)
T PF05622_consen 508 NEKILELQSQLEELQKSLQEQGSKSEDSSELKQKLEEHLEKLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQK 587 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35666777777777776655443322 233466677777777888888888888877 8999999999999
Q ss_pred hhhhHHHHHH
Q 022306 203 MQGEMSSFMQ 212 (299)
Q Consensus 203 m~~eIsslm~ 212 (299)
...++.+.-.
T Consensus 588 k~~e~~~~ee 597 (713)
T PF05622_consen 588 KEEEMRAMEE 597 (713)
T ss_dssp ----------
T ss_pred hHHHHHhHHH
Confidence 8888876543
No 141
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.84 E-value=66 Score=31.79 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=26.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 99 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 99 ~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
+.+--.-|..|..|++-|+|.--.|-=.|.|+|..
T Consensus 13 ~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAa 47 (307)
T PF10481_consen 13 PTRALQKIQELEQQLDKLKKERQQRQFQLESLEAA 47 (307)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33434456778889999998888888888887765
No 142
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.73 E-value=61 Score=34.27 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLESSK------SQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae~~~------~em~a~~akvDELr~~lae 153 (299)
+.-|.+|+..|+++|..-|..|..-.... .+..++..++.+|+.|+++
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~ 322 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNE 322 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45588999999999999999888766541 2334444444455444443
No 143
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=75.60 E-value=1.1e+02 Score=35.44 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhh
Q 022306 172 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIK 219 (299)
Q Consensus 172 LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~ 219 (299)
|.+...-|..+.-|+..-++.+..|..+..++....-.+++-++.+..
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444455555666666666666666665566666665554
No 144
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=75.15 E-value=33 Score=32.96 Aligned_cols=98 Identities=17% Similarity=0.266 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHH
Q 022306 108 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAM 187 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~ 187 (299)
=++.+++.++.+|.+....|.. ...++..++++|..|+.++.+...=.+.++.+....+..|..-+..+..|.-|-.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~---~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAE---KQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence 3666666666666655554443 3455666677777777777665555666666666666666666667777777777
Q ss_pred HhhhHHHHHHHHHhhhhhhHH
Q 022306 188 TVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 188 ~sn~Kve~Lq~dl~~m~~eIs 208 (299)
.=...+..+...+.++-|++.
T Consensus 295 RW~~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 295 RWSEQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp CCHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccHHHHH
Confidence 777888888888888888765
No 145
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=75.13 E-value=4.2 Score=32.95 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHhHHhhHHHH
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKD---SLIKSTQLQLSDAKI 170 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe---~likStq~QLsdaki 170 (299)
..++.|+..|+.++..+...+..+.....++..+..+++++++.+-... .|+..++..-..+.+
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~~~~~~ll~~l~~~A~~~gv 68 (144)
T PF04350_consen 2 KTLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAEEEIPSLLEDLNRLAKKSGV 68 (144)
T ss_dssp ----------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGGGHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHCCC
Confidence 4577888889999988888888888888888888888888888775543 444444444433333
No 146
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.91 E-value=74 Score=30.80 Aligned_cols=87 Identities=25% Similarity=0.259 Sum_probs=67.6
Q ss_pred CCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Q 022306 85 DSDSFSIFSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKS-LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQL 163 (299)
Q Consensus 85 ~~en~s~~~s~~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkS-ae~~~~em~a~~akvDELr~~laeKe~likStq~ 163 (299)
++.+|+=+++|-.+-..-.+==..+-++..+=|+.|.+|...|.. .+.++.=++.++..++.|..+.++++.+|=.+..
T Consensus 125 ~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa 204 (265)
T COG3883 125 NSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAA 204 (265)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888887777663333345667777778888888877754 5667888999999999999999999999988877
Q ss_pred HhhHHHHh
Q 022306 164 QLSDAKIK 171 (299)
Q Consensus 164 QLsdaki~ 171 (299)
.+..++-.
T Consensus 205 ~~a~~~~e 212 (265)
T COG3883 205 KEASALGE 212 (265)
T ss_pred HHHHhHHH
Confidence 77665433
No 147
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=74.72 E-value=79 Score=34.05 Aligned_cols=68 Identities=28% Similarity=0.294 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHh----hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 022306 138 NAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIK----LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQG 205 (299)
Q Consensus 138 ~a~~akvDELr~~laeKe~likStq~QLsdaki~----LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~ 205 (299)
-.+++++.++.+.+..=.+.|+-||.||.+.+.. .+-|.|-+.=+=-|+-.-++++..||.+++.++.
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556555555566777777777777776 5556655555555555556666666655554443
No 148
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.51 E-value=66 Score=34.73 Aligned_cols=86 Identities=22% Similarity=0.376 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 184 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlew 184 (299)
++..|.++|+.|+.... +|-.-++..+.++..|.++++++++.+..|-. + + -.+-.++--++.|+.
T Consensus 423 ~i~~~~~~ve~l~~e~~---~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~--~-------~--rei~~~~~~I~~L~~ 488 (652)
T COG2433 423 RIKKLEETVERLEEENS---ELKRELEELKREIEKLESELERFRREVRDKVR--K-------D--REIRARDRRIERLEK 488 (652)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h-------h--HHHHHHHHHHHHHHH
Confidence 34444444444443332 22222333334445555555555555442211 1 1 122345556788999
Q ss_pred HHHHhhhHHHHHHHHHhhhh
Q 022306 185 EAMTVSRKAEKLQEEVESMQ 204 (299)
Q Consensus 185 E~~~sn~Kve~Lq~dl~~m~ 204 (299)
+++...++++.|...|..++
T Consensus 489 ~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 489 ELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887
No 149
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.51 E-value=1.3e+02 Score=34.25 Aligned_cols=93 Identities=24% Similarity=0.326 Sum_probs=59.3
Q ss_pred cHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHH
Q 022306 102 EIEELVALREQVEDLQRKMF-----------EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKI 170 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~-----------EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki 170 (299)
-.+|+..++.+|.+|+-.+. +|+.+=+.+.....+|..++..+.+++..|.+++..|. -+..+...-+
T Consensus 453 le~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~-~~~~se~~l~ 531 (1041)
T KOG0243|consen 453 LEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIIS-QQEKSEEKLV 531 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45688888888888877665 45555566777778999999999999999998887764 3333333222
Q ss_pred hhh-hHHHHHHHHHHHHHHhhhHHHH
Q 022306 171 KLA-DKQAALEKSQWEAMTVSRKAEK 195 (299)
Q Consensus 171 ~La-dKqAaLEKlewE~~~sn~Kve~ 195 (299)
..| +.|..++..+-.+-.=..|+..
T Consensus 532 ~~a~~l~~~~~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 532 DRATKLRRSLEESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222 2344455544444433344433
No 150
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=74.42 E-value=86 Score=34.15 Aligned_cols=114 Identities=27% Similarity=0.326 Sum_probs=56.3
Q ss_pred CCCccccchhhhhhhh---cHHHHHHHHHHHHHHH----------HHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 022306 86 SDSFSIFSSRALVSEK---EIEELVALREQVEDLQ----------RKMFEKDELLKSLESS-KSQVNAVHLKLDELKRLA 151 (299)
Q Consensus 86 ~en~s~~~s~~~~~~k---~~eEl~~LreQVeeLq----------kKL~EKDelLkSae~~-~~em~a~~akvDELr~~l 151 (299)
.-||.+.+++.-+-.+ =+++.-.|.+||-.|. ++|.|+.-.|.+-.+. +.+..-+.-.+..+++..
T Consensus 482 d~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~ 561 (698)
T KOG0978|consen 482 DKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKA 561 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4566666665555444 2344444444444332 2344444444443333 455555555666666666
Q ss_pred HhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022306 152 AEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEE 199 (299)
Q Consensus 152 aeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~d 199 (299)
.|=.....-+|.++...+.+|-+-|--+..+.-|++.=..|.-.+|++
T Consensus 562 ~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE 609 (698)
T KOG0978|consen 562 QEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEE 609 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554444444444444444444444444443
No 151
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=74.20 E-value=50 Score=27.48 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 174 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 174 dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+..-|++-++.-+..-+...+.|+.++..++.++..+...++.+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666665555666666666777666666666666666554
No 152
>PRK00106 hypothetical protein; Provisional
Probab=73.96 E-value=96 Score=32.56 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=23.9
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 022306 165 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 209 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIss 209 (299)
|....-.|..+...|++-+.++-.....++..+.++.....++..
T Consensus 106 L~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~ 150 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEK 150 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555555555555553
No 153
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=73.75 E-value=39 Score=36.08 Aligned_cols=73 Identities=23% Similarity=0.285 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 139 AVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 139 a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.||.++|+...++.--..|...++.|+.+..--++.....++.++||.- ++|++......++...+..|+.|+
T Consensus 425 ~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~-------~~Q~~~e~~~~e~~e~~~al~el~ 497 (607)
T KOG0240|consen 425 SLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELS-------EIQEENEAAKDEVKEVLTALEELA 497 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444555555555555555555555555542 344444444445555555555444
No 154
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=73.70 E-value=1.4e+02 Score=32.32 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHhhhhh
Q 022306 254 MEEAREAYITAVAMAKEKQ--DEESMATAARARLHLQSF 290 (299)
Q Consensus 254 mE~aR~aY~aAvaaAKenp--~eEsl~~aAeaR~~Lq~f 290 (299)
.+....+-+.||+|.+++- -|.+| .||-|.-|--|
T Consensus 585 ~~~~~e~L~~aL~amqdk~~~LE~sL--saEtriKldLf 621 (697)
T PF09726_consen 585 SEKDTEVLMSALSAMQDKNQHLENSL--SAETRIKLDLF 621 (697)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence 3556778888999888764 34544 45666655544
No 155
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=73.47 E-value=28 Score=30.51 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 022306 131 ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 207 (299)
Q Consensus 131 e~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eI 207 (299)
+..+.+...++..++.++.||.+++--|+.++- ......+.|+.++.|+-+..+ ..+..+.++..+.+.-
T Consensus 16 ~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~----~~~d~eeLk~~i~~lq~~~~~---~~~~~e~~l~~~~~~~ 85 (155)
T PF06810_consen 16 EAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK----SAKDNEELKKQIEELQAKNKT---AKEEYEAKLAQMKKDS 85 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 335667777788888888888888888877655 345566777788887776643 4556677777776643
No 156
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=73.39 E-value=29 Score=28.25 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 174 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 174 dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
+...|.+-++.-+..=+.-.+.|+.++..++.++..++..++
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666677777888888877777777665
No 157
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.97 E-value=1.2e+02 Score=34.88 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 022306 251 MQRMEEAREAYITAVAMAKE 270 (299)
Q Consensus 251 ~~kmE~aR~aY~aAvaaAKe 270 (299)
+.....++..|..+..++.+
T Consensus 444 L~~~~~~~e~a~~~~~~~~~ 463 (1353)
T TIGR02680 444 LRRRDDVADRAEATHAAARA 463 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445556666555544443
No 158
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=72.92 E-value=78 Score=29.12 Aligned_cols=92 Identities=13% Similarity=0.244 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLES----SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~----~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl 182 (299)
-.|.-.++++...|...-..+...+. +..++..+...++.|..++. -.-.--.++
T Consensus 20 ~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~---------------------~~~~~~~~l 78 (264)
T PF06008_consen 20 YKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKAT---------------------KVSRKAQQL 78 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence 34555666666666655554444322 22334444444444444332 222233456
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhh
Q 022306 183 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIK 219 (299)
Q Consensus 183 ewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~ 219 (299)
...+.....++..|..++..+...|..+...+..+..
T Consensus 79 ~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 79 NNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 6677778888888888888888888888888887775
No 159
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=72.02 E-value=1.2e+02 Score=31.47 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=26.0
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 022306 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 209 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIss 209 (299)
+|....-.|..+...|++-+.++-.....++..+.+++.+..+...
T Consensus 84 rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~ 129 (514)
T TIGR03319 84 RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEE 129 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555666666666656666666666666665555553
No 160
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=71.77 E-value=85 Score=29.10 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhhhc
Q 022306 192 KAEKLQEEVESMQGEMSSFMQIFEGLIKN 220 (299)
Q Consensus 192 Kve~Lq~dl~~m~~eIsslm~~fe~lt~n 220 (299)
=-+.+.+||.+|+.-++.|..-|+++-+.
T Consensus 77 erdq~~~dL~s~E~sfsdl~~ryek~K~v 105 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFSDLHKRYEKQKEV 105 (207)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34568899999999999999999876644
No 161
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=71.73 E-value=75 Score=33.73 Aligned_cols=117 Identities=17% Similarity=0.286 Sum_probs=69.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh---------
Q 022306 102 EIEELVALREQVEDLQRKMFEKDE-------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL--------- 165 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDe-------lLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QL--------- 165 (299)
--+|+-+|++++++|+++|.-++= +-..-+.+--+++-++-+.|+|.+.|-+.+.+++..=-.|
T Consensus 342 kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~s 421 (622)
T COG5185 342 KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDS 421 (622)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999988754331 1111122223444455555566665555555444322222
Q ss_pred -------hHHHHhhhh------------------HHHHHH--------HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 166 -------SDAKIKLAD------------------KQAALE--------KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 166 -------sdaki~Lad------------------KqAaLE--------KlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
+-++|.-+. +.-.+- +++-++.+-..|--.||++++++...|+-|..
T Consensus 422 l~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~ 501 (622)
T COG5185 422 LIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQ 501 (622)
T ss_pred HHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHH
Confidence 112222111 111122 24555666677778899999999999999999
Q ss_pred HHhhhh
Q 022306 213 IFEGLI 218 (299)
Q Consensus 213 ~fe~lt 218 (299)
.+++|.
T Consensus 502 ~l~~~e 507 (622)
T COG5185 502 ILEKLE 507 (622)
T ss_pred HHHHHH
Confidence 999776
No 162
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=71.58 E-value=1.3e+02 Score=31.94 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH--------------HHHHHHHHHHHHHhhhHHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK--------------QAALEKSQWEAMTVSRKAEKLQEEV 200 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadK--------------qAaLEKlewE~~~sn~Kve~Lq~dl 200 (299)
.++..+..-||+..+..++=+-=|.-+..|+-+++.++.++ ...|-.+|-|+.+...+...|++++
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~ 171 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL 171 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55566666666666666665666666666666666666555 5566668888888888899999999
Q ss_pred hhhhhhHHHHHHHHhhhhh
Q 022306 201 ESMQGEMSSFMQIFEGLIK 219 (299)
Q Consensus 201 ~~m~~eIsslm~~fe~lt~ 219 (299)
..+..|++.|...|..+.+
T Consensus 172 ~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhhHHHHHHHHH
Confidence 9999999999999998873
No 163
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.31 E-value=1.5e+02 Score=31.76 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 022306 103 IEELVALREQVEDLQRKMFEK-------DELLKSLESSKSQVNAVHLKLDELKRLAAEKDS 156 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EK-------DelLkSae~~~~em~a~~akvDELr~~laeKe~ 156 (299)
-+|+-.|+.++++|++++--+ +.+=..-+.+..+++.++.++|.|.+.+=+-+.
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 356666666666666665322 122222233344455555555555555544444
No 164
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=71.27 E-value=47 Score=25.87 Aligned_cols=65 Identities=23% Similarity=0.382 Sum_probs=33.5
Q ss_pred HHHHHHhhHHHHHHHhHH---hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 147 LKRLAAEKDSLIKSTQLQ---LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 147 Lr~~laeKe~likStq~Q---Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
|.+.|++||..|.-+..+ |+.....+.+ .+-||--.+.....-+..|...++....+|.+|...+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~---~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNN---TIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888888766633 3333333222 2233333444444444555555555555555554443
No 165
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.20 E-value=40 Score=32.70 Aligned_cols=44 Identities=36% Similarity=0.489 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 108 ALREQVEDLQRK----MFEKDELLKSLESSKSQVNAVHLKLDELKRLA 151 (299)
Q Consensus 108 ~LreQVeeLqkK----L~EKDelLkSae~~~~em~a~~akvDELr~~l 151 (299)
.|++-.++++.| ..||++|++.++-+.++.++++..+..|+.+.
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333 35899999999999999999998888877654
No 166
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=70.37 E-value=19 Score=27.47 Aligned_cols=48 Identities=17% Similarity=0.303 Sum_probs=21.6
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.|.+-.++||=-.-.++.| |.-|-..|.+++.++.++..|...+..+.
T Consensus 5 Ri~~LE~~la~qe~~ie~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEEL-------NDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444445544 33444455555555555555555555555
No 167
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.12 E-value=1.2e+02 Score=34.84 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 175 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadK 175 (299)
.++...+..+++++.++.+...-+.-++.++..++..+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 309 (1353)
T TIGR02680 269 TRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEAL 309 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555554444444444444443
No 168
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=70.07 E-value=1.2e+02 Score=30.07 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 192 KAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 192 Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.+..++++++.++.+|......+..+.
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~ 263 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLT 263 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 678888889999999988888777765
No 169
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.02 E-value=1.4e+02 Score=34.17 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 022306 105 ELVALREQVEDLQRKM-FEKDELLKSLESSK----------SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA 173 (299)
Q Consensus 105 El~~LreQVeeLqkKL-~EKDelLkSae~~~----------~em~a~~akvDELr~~laeKe~likStq~QLsdaki~La 173 (299)
++-....+.+++-|+| .|++.|+...+... ++.+-+..-.+.+..+..+=---|+-.+.-|++...++.
T Consensus 426 ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~els 505 (1195)
T KOG4643|consen 426 QLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELS 505 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666665 47777777665542 222222223333344444433448888888999999999
Q ss_pred hHHHHHHHHHHHHHH-------hhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 174 DKQAALEKSQWEAMT-------VSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 174 dKqAaLEKlewE~~~-------sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.+++...++..-..+ .+.|++.|.+++.+++-|=..|...+++|.
T Consensus 506 rl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 506 RLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999988887665544 578999999999888776666666666554
No 170
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=69.86 E-value=88 Score=28.47 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHhHHhhHHHHhhhhHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSL-IKSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~l-ikStq~QLsdaki~LadKqAaLE 180 (299)
-.+|+..|++++-..|.+..+-+--|+- ...+|.-+..++.-|++.+.+|.-. ..-.+.+|+.+...|.+..-.+.
T Consensus 66 h~eEvr~Lr~~LR~~q~~~r~~~~klk~---~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 66 HNEEVRVLRERLRKSQEQERELERKLKD---KDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888887777777655544443 3456666777777777765555443 44558899999999988877777
Q ss_pred HHHHHHHHhhh--H--HHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 181 KSQWEAMTVSR--K--AEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 181 KlewE~~~sn~--K--ve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.|+.-+--.++ + ...-......++.++..++.-++.|.
T Consensus 143 ~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 143 ELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665443333 2 33344556677778888777666554
No 171
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=69.78 E-value=1.3e+02 Score=30.58 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 213 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~ 213 (299)
.++-.-++.++|++.++..||+-=.++++-+|.++ +|-+|+..+--|-=...---=..+=|+-++.++.-|.-||+-
T Consensus 140 ~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~---layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~E 216 (401)
T PF06785_consen 140 REENQCLQLQLDALQQECGEKEEESQTLNRELAEA---LAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYE 216 (401)
T ss_pred HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH---HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35556678899999999999999888888888876 444555444433222211112233344444444444444544
Q ss_pred Hhhhh
Q 022306 214 FEGLI 218 (299)
Q Consensus 214 fe~lt 218 (299)
|.+|-
T Consensus 217 irnLL 221 (401)
T PF06785_consen 217 IRNLL 221 (401)
T ss_pred HHHHH
Confidence 44443
No 172
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=69.45 E-value=1.4e+02 Score=30.89 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=23.5
Q ss_pred HHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 022306 148 KRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESM 203 (299)
Q Consensus 148 r~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m 203 (299)
+..+..+|.-+.--..+|....-.|..++..|++.+-++-.....+++++.++..+
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~ 130 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEEL 130 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333334444444444444444444444444444444444444333
No 173
>PRK11281 hypothetical protein; Provisional
Probab=69.44 E-value=1.3e+02 Score=34.27 Aligned_cols=81 Identities=19% Similarity=0.072 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHh--------hhHHHHHHHHHhhhhhh
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTV--------SRKAEKLQEEVESMQGE 206 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~s--------n~Kve~Lq~dl~~m~~e 206 (299)
..++.+...+.+.+..+++=++.+-+.|.+...|+-.+.+-+..+..+....... ......||.++..+..+
T Consensus 128 q~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~ 207 (1113)
T PRK11281 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQ 207 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444433321 13344555555555555
Q ss_pred HHHHHHHHh
Q 022306 207 MSSFMQIFE 215 (299)
Q Consensus 207 Isslm~~fe 215 (299)
+.-.+..+.
T Consensus 208 ~~~~~~~l~ 216 (1113)
T PRK11281 208 NDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHh
Confidence 554444443
No 174
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.43 E-value=1.1e+02 Score=29.48 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 022306 130 LESSKSQVNAVHLKLDELKRLAAE--KDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 207 (299)
Q Consensus 130 ae~~~~em~a~~akvDELr~~lae--Ke~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eI 207 (299)
-.++++++...+..+|-.-+.... ++++...++ +|+.-++.+-.+.+.|...|.|+...|.=+.+=.+...-++.+|
T Consensus 17 ~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar-~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqei 95 (246)
T KOG4657|consen 17 GDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFAR-ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEI 95 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777755544422 466777778 99999999999999999999999999998888888888899999
Q ss_pred HHHHHHHhhhhhcC
Q 022306 208 SSFMQIFEGLIKND 221 (299)
Q Consensus 208 sslm~~fe~lt~n~ 221 (299)
.+|+.-++-++.|.
T Consensus 96 k~~q~elEvl~~n~ 109 (246)
T KOG4657|consen 96 KATQSELEVLRRNL 109 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887653
No 175
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.98 E-value=41 Score=35.96 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022306 125 ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST 161 (299)
Q Consensus 125 elLkSae~~~~em~a~~akvDELr~~laeKe~likSt 161 (299)
|.++.+++..-+...|..+|+.|+..+.||++-.+-.
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dl 364 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDL 364 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777788888888888777777655443
No 176
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=68.65 E-value=1e+02 Score=33.13 Aligned_cols=84 Identities=25% Similarity=0.317 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
++..-|-+.+..|+++|.+||..+.+..++ ..+|+.++.+.+.+..++--++.+-+..+.+-|...+-.+
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL----------~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~ 483 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQL----------MEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAK 483 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778899999999999999876655544 4566777777788887777777777777777777666666
Q ss_pred HHHHHhhhHHHHHH
Q 022306 184 WEAMTVSRKAEKLQ 197 (299)
Q Consensus 184 wE~~~sn~Kve~Lq 197 (299)
-|+...-++.++|-
T Consensus 484 ~e~~e~~~al~el~ 497 (607)
T KOG0240|consen 484 DEVKEVLTALEELA 497 (607)
T ss_pred HHHHHHHHHHHHHH
Confidence 66555555555443
No 177
>PRK02119 hypothetical protein; Provisional
Probab=68.28 E-value=51 Score=25.68 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=20.3
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCccc
Q 022306 193 AEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYY 236 (299)
Q Consensus 193 ve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~ 236 (299)
|-..|.+++.|+.++..|...+..+....-... .+..++|++
T Consensus 32 v~~Qq~~id~L~~ql~~L~~rl~~~~~~~~~~~--~~e~~PPHY 73 (73)
T PRK02119 32 LIEQQFVIDKMQVQLRYMANKLKDMQPSNIASQ--AEETPPPHY 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCC--CCCCCcCCC
Confidence 334444555555555555555555542221222 244466664
No 178
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=67.81 E-value=1.6e+02 Score=32.46 Aligned_cols=56 Identities=14% Similarity=0.243 Sum_probs=34.6
Q ss_pred hhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022306 96 ALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEK 154 (299)
Q Consensus 96 ~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeK 154 (299)
+...+.-.+++..|..++++|++.|.+ +-.--.....++.+++..-|.|+.+|+..
T Consensus 154 ~~Lt~aHq~~l~sL~~k~~~Le~~L~~---le~~r~~e~~~La~~q~e~d~L~~qLsk~ 209 (739)
T PF07111_consen 154 SSLTQAHQEALASLTSKAEELEKSLES---LETRRAGEAKELAEAQREADLLREQLSKT 209 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444567788888888888887722 11112223467777777777777776543
No 179
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=67.48 E-value=1.6e+02 Score=30.64 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH-----------------HHHHHHHHHHHHhhhHH
Q 022306 131 ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ-----------------AALEKSQWEAMTVSRKA 193 (299)
Q Consensus 131 e~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq-----------------AaLEKlewE~~~sn~Kv 193 (299)
.....+...+...+++.++...||-.+++..+.+|...=.-||++. ..|.=+.-.+..=.++|
T Consensus 77 ~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v 156 (475)
T PRK10361 77 TSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQV 156 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3335666677788888888888888888888888887766666542 12222444444455566
Q ss_pred HHHHH----HHhhhhhhHHHHHHHHh
Q 022306 194 EKLQE----EVESMQGEMSSFMQIFE 215 (299)
Q Consensus 194 e~Lq~----dl~~m~~eIsslm~~fe 215 (299)
+++.. +-.+|..+|..|+.+=.
T Consensus 157 ~~~~~~~~~~~~~L~~qi~~L~~~n~ 182 (475)
T PRK10361 157 QDSFGKEAQERHTLAHEIRNLQQLNA 182 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 24555556655554433
No 180
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=67.17 E-value=18 Score=36.92 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 022306 112 QVEDLQRKMFEKDELLKSLESSK-SQVNAVHLKLDELKRL-AAEKDSLIKSTQLQLSDAKIKLADKQAA 178 (299)
Q Consensus 112 QVeeLqkKL~EKDelLkSae~~~-~em~a~~akvDELr~~-laeKe~likStq~QLsdaki~LadKqAa 178 (299)
.+++||+.+..-+..|-.+.+-. ..-.+...-=|++.+. +-.+..-+.++|.-|.+-|.+|||.-++
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~v~~ 71 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADRVAA 71 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677777777777776666543 2233333444566544 4456666777777777777777775555
No 181
>PRK04406 hypothetical protein; Provisional
Probab=66.93 E-value=61 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCccc
Q 022306 193 AEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYY 236 (299)
Q Consensus 193 ve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~ 236 (299)
|-..|.+++.|+.++..|...+..+.....++.. +..++|++
T Consensus 34 v~~Qq~~I~~L~~ql~~L~~rl~~~~~~~~~~~~--~e~pPPHY 75 (75)
T PRK04406 34 LSQQQLLITKMQDQMKYVVGKVKNMDSSNLADPA--EETPPPHY 75 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC--CCCCccCC
Confidence 3344445555555555555555544422222232 33456654
No 182
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=66.32 E-value=70 Score=25.99 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESS---------------KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~---------------~~em~a~~akvDELr~~laeKe~likStq~QLs 166 (299)
+..++..+.+++..+++.+-.+..-+..+... ...+..++..-+.|...+.++...++..-.++.
T Consensus 31 d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~ 110 (213)
T cd00176 31 DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQ 110 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777776666555555443 366677888888888888888888877654433
Q ss_pred HHHHhhhhHHHHHHHHHH-----HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 167 DAKIKLADKQAALEKSQW-----EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 167 daki~LadKqAaLEKlew-----E~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.-+. +-+...-+...+- ....+...+..+..++..+..+|......++.+.
T Consensus 111 ~~~~-~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 166 (213)
T cd00176 111 FFRD-ADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLN 166 (213)
T ss_pred HHHH-HHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3222 1113333333332 2222456777777777777777776666666555
No 183
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.32 E-value=81 Score=26.70 Aligned_cols=60 Identities=28% Similarity=0.332 Sum_probs=47.9
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhc
Q 022306 161 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 220 (299)
Q Consensus 161 tq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n 220 (299)
.+.++..+...|+.|++.+++++----+...|+..|+.++...+.++.....-|+.|+.+
T Consensus 115 ~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~ 174 (218)
T cd07596 115 ALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISER 174 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788889999999999865433455799999999999999999888888888743
No 184
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=66.22 E-value=1.7e+02 Score=33.46 Aligned_cols=86 Identities=26% Similarity=0.280 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 022306 123 KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVES 202 (299)
Q Consensus 123 KDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~ 202 (299)
||.+-+.++-+..+..-+..+..+|+.+..+=++-|...+..|.++..++..+.--+.-++-++-..-.+.+.|+..-..
T Consensus 257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~ 336 (1072)
T KOG0979|consen 257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEK 336 (1072)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555666666666666666666666666665555444444333443433333333333333333
Q ss_pred hhhhHH
Q 022306 203 MQGEMS 208 (299)
Q Consensus 203 m~~eIs 208 (299)
.+..|.
T Consensus 337 rq~~i~ 342 (1072)
T KOG0979|consen 337 RQKRIE 342 (1072)
T ss_pred HHHHHH
Confidence 333333
No 185
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=65.72 E-value=1e+02 Score=27.59 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=73.1
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhhHHHHH------------HHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 022306 99 SEKEIEELVALREQVEDLQRKMFEKDELLK------------SLESS-------KSQVNAVHLKLDELKRLAAEKDSLIK 159 (299)
Q Consensus 99 ~~k~~eEl~~LreQVeeLqkKL~EKDelLk------------Sae~~-------~~em~a~~akvDELr~~laeKe~lik 159 (299)
.+.-|.|...|+.++++++.++.+==.-.. =++-+ ..+|..+|.+..+++-.|+-...--+
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777766643211111 11111 48889999999988888876666666
Q ss_pred HHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 160 STQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 160 Stq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
.+...--+-...|...+..+|+.|.=+-.-+--.+=|.+||..+...|..+
T Consensus 102 qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 102 QLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666777778888888877766666666667777777666665544
No 186
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=65.50 E-value=98 Score=29.44 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHH---HHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 139 AVHLKLDELKRLAAEKDSLIK---STQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 139 a~~akvDELr~~laeKe~lik---Stq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
.+++.++..++++..-..|.+ -++.++.+++..+...++.++.++-.+
T Consensus 117 ~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l 167 (370)
T PRK11578 117 QAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQI 167 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433334443 245566677766666666665554444
No 187
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.48 E-value=40 Score=29.52 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 165 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QL 165 (299)
++..++++++.++++.....+.-+.. ...+......++++|++++..++.=+..++.|.
T Consensus 126 ~l~~~~~~~~~~~kq~~~~~~~~~~~--~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 126 ELIKLEEKLEALKKQAESASEAAEKL--LKEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666655444333333 344555666677777777766555555444443
No 188
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=65.12 E-value=1.5e+02 Score=29.27 Aligned_cols=108 Identities=19% Similarity=0.326 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 022306 104 EELVALREQVEDLQRKMFEKDEL---LKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDel---LkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLE 180 (299)
+.+..|+.++++-++.+-.++.+ +..+..++.+-..++.+|.+|-.+. +..--++-..-...-+...--.
T Consensus 138 q~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea-------qe~he~m~k~~~~~De~Rkead 210 (294)
T COG1340 138 QKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA-------QEYHEEMIKLFEEADELRKEAD 210 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444322 2333333344444444444444443 2222333333334444444445
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 181 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.+=.++.....+++.+-+++.+++.+|--++..+-.|.
T Consensus 211 e~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 211 ELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888888888888888888888888777666
No 189
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.08 E-value=32 Score=33.10 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 138 NAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 138 ~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
..++..|.=++..+.+=+.-+.-++.+|...+..|++.++.|+.|+-+.-........|+.++...+.-+..-..++.+|
T Consensus 210 ~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 210 YEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp HHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
Confidence 33344444455555555555556666666666666666666666666666666666666666666666666666666665
Q ss_pred h
Q 022306 218 I 218 (299)
Q Consensus 218 t 218 (299)
+
T Consensus 290 ~ 290 (344)
T PF12777_consen 290 S 290 (344)
T ss_dssp H
T ss_pred c
Confidence 5
No 190
>PF14282 FlxA: FlxA-like protein
Probab=65.07 E-value=36 Score=27.89 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 022306 103 IEELVALREQVEDLQRKMFEKDE--LLKSLESSKSQVNAVHLKLDELKRLAAEKD 155 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDe--lLkSae~~~~em~a~~akvDELr~~laeKe 155 (299)
-..+..|+.||..|+.+|-+=-. =| +.+.-..++..|+++|..|..+++...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~-~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDL-DAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998853111 11 556666778888888888877776443
No 191
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=64.89 E-value=1.2e+02 Score=28.00 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=52.6
Q ss_pred HHHHHHhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHH----HHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 115 DLQRKMFEKDELLKSLESS---------KSQVNAVHLKLDELKRL----AAEKDSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 115 eLqkKL~EKDelLkSae~~---------~~em~a~~akvDELr~~----laeKe~likStq~QLsdaki~LadKqAaLEK 181 (299)
+|++.|.|=+.+|+-+... ..+..+++.-++.++.. ..+-+.|+..+...|.+..-+|.|.+.+|..
T Consensus 124 ~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666655333 35556666655555554 3567788899999999999999999999988
Q ss_pred HHHHHHHhhhH
Q 022306 182 SQWEAMTVSRK 192 (299)
Q Consensus 182 lewE~~~sn~K 192 (299)
.+-=+...++.
T Consensus 204 A~~~~~ea~~l 214 (264)
T PF06008_consen 204 AQNKTREAEDL 214 (264)
T ss_pred HHHHHHHHHHH
Confidence 66555444433
No 192
>PRK00295 hypothetical protein; Provisional
Probab=64.28 E-value=64 Score=24.80 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=24.7
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 165 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+.+-.+++|=-.-.++.| |.=|-..|.+++.|+.++..|...+..+.
T Consensus 7 i~~LE~kla~qE~tie~L-------n~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQAL-------NDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444443 44444555666666666666666666554
No 193
>PRK00736 hypothetical protein; Provisional
Probab=63.97 E-value=61 Score=24.90 Aligned_cols=63 Identities=17% Similarity=0.341 Sum_probs=31.1
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCccc
Q 022306 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYY 236 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~ 236 (299)
.+.+-.+++|--.-.++.| |.=|-..|.+++.|+.++..|...+....... +... +..++|++
T Consensus 6 Ri~~LE~klafqe~tie~L-------n~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~~-~~~~--~~~~PPHY 68 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEEL-------SDQLAEQWKTVEQMRKKLDALTERFLSLEEQA-APDV--PVTKPPHW 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCC--CCCCcCCC
Confidence 3444455555555555554 33344455555556666666655555544222 2222 33456654
No 194
>PRK02793 phi X174 lysis protein; Provisional
Probab=63.62 E-value=68 Score=24.90 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCccc
Q 022306 190 SRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYY 236 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~ 236 (299)
|.-|-..|.+++.++.++..|...+..+..+.-+... +..++|++
T Consensus 28 n~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~~~~~~--~e~~PPHY 72 (72)
T PRK02793 28 NVTVTAHEMEMAKLRDHLRLLTEKLKASQPSNIASQA--EETPPPHY 72 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCC--CCCCcCCC
Confidence 3334445555566666666666666655533323332 44466664
No 195
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=63.20 E-value=33 Score=29.32 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022306 135 SQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 135 ~em~a~~akvDELr~~lae 153 (299)
.+|.++...||+|+++|++
T Consensus 83 ~~~~~l~~rvd~Lerqv~~ 101 (108)
T COG3937 83 SEMDELTERVDALERQVAD 101 (108)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 6778888888888888875
No 196
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=63.14 E-value=2.4 Score=45.77 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 213 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~ 213 (299)
.++|+.+..++|...+...+=-..|+-+|.|+.+.+..|.+-+.+.+.+.-.+..+..++..|+++|..+++...+.+..
T Consensus 552 E~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~ 631 (859)
T PF01576_consen 552 ESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERA 631 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999888888888899999999999999999999999999999999999999999999999888776554
Q ss_pred H
Q 022306 214 F 214 (299)
Q Consensus 214 f 214 (299)
-
T Consensus 632 r 632 (859)
T PF01576_consen 632 R 632 (859)
T ss_dssp -
T ss_pred H
Confidence 3
No 197
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=63.08 E-value=2.2e+02 Score=30.51 Aligned_cols=67 Identities=25% Similarity=0.240 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh----------HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 142 LKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD----------KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 142 akvDELr~~laeKe~likStq~QLsdaki~Lad----------KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
.++..|+.+..+||.-|+++|++..+-|..+-. |.+--|+|-+|+-+-|-+.++|-..|.+-.-++.
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 456778899999999999999998887776643 5566677778887777888888777776555544
No 198
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.90 E-value=19 Score=27.54 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 177 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 177 AaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
+-+++|.-+|-+-|.||..|+.|++.|+.+|..-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888999999999999999999999988643
No 199
>smart00338 BRLZ basic region leucin zipper.
Probab=62.84 E-value=28 Score=25.58 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
|+.-+..||-++..-......|+.+++.|+.+|..|..++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777778888888888888777665
No 200
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=62.78 E-value=85 Score=27.51 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 129 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 129 Sae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
.+-....++..+++++++++++......-.+.. ..=+....+..+++|..+|...+.++.
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~--------------------~~~~~~~~~~ei~~lk~el~~~~~~~~ 178 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKL--------------------LKEENKKLSEEIEKLKKELEKKEKEIE 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--------------------hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333445666666666666666554332222221 122233344556666666666777777
Q ss_pred HHHHHHhhhh
Q 022306 209 SFMQIFEGLI 218 (299)
Q Consensus 209 slm~~fe~lt 218 (299)
.|..+-+++.
T Consensus 179 ~LkkQ~~~l~ 188 (192)
T PF05529_consen 179 ALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 201
>PRK11281 hypothetical protein; Provisional
Probab=62.49 E-value=1.5e+02 Score=33.76 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHH
Q 022306 124 DELLKSLESSKSQVNAVHLKLDELKRLAA-------EKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKL 196 (299)
Q Consensus 124 DelLkSae~~~~em~a~~akvDELr~~la-------eKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~L 196 (299)
+.+=+.+...-.++..+.+.++++++... .+-++-+ .+.+|.+-...|++-|+.|..+.-.+..-++.-++-
T Consensus 83 ~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~q-LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERA 161 (1113)
T PRK11281 83 EQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA 161 (1113)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 44555555566666777777777665321 2333322 445555555556666666666655666666666666
Q ss_pred HHHHhhhhhhHHHHHHHHhh
Q 022306 197 QEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 197 q~dl~~m~~eIsslm~~fe~ 216 (299)
|..+...+..+......+.+
T Consensus 162 Q~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 162 QAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 66666666666665555443
No 202
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=61.72 E-value=2.2e+02 Score=30.23 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLs 166 (299)
..=..++++||.+|- ++...++....+|..+...+.++..++.+.+.-....+.++.
T Consensus 324 ~~~~~el~~l~~~l~---~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 324 EEQEQELEELQEQLD---ELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556665552 355555555555555555555555555555555555444443
No 203
>PF13166 AAA_13: AAA domain
Probab=61.70 E-value=2e+02 Score=29.65 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhH
Q 022306 105 ELVALREQVEDLQRKMFEKD 124 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKD 124 (299)
.+..|...++.|.+.|.+|-
T Consensus 330 ~~~~l~~~l~~l~~~L~~K~ 349 (712)
T PF13166_consen 330 AIEALKEELEELKKALEKKI 349 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777764
No 204
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.56 E-value=69 Score=27.56 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
++..|++|+.+|+..+..-..-|.++.+.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 38888888888888777766666665544
No 205
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.40 E-value=2.1e+02 Score=29.76 Aligned_cols=146 Identities=18% Similarity=0.228 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK 181 (299)
+.+.=-....++++.++++++|+---+.+-- .++..+++++++.+.... .-.+-|+....+.+-|..+.++.
T Consensus 33 ~q~~q~~~l~~~ee~e~~~~~~~A~~~~~~k--kel~~~~~q~~~~k~~~~------~~~~eqi~~~~~~~q~e~~~~~~ 104 (438)
T COG4487 33 EQEDQSRILNTLEEFEKEANEKRAQYRSAKK--KELSQLEEQLINQKKEQK------NLFNEQIKQFELALQDEIAKLEA 104 (438)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445667889999999998866665554 566666677776643321 01112222222555666666666
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHH-HHHHHHhhhh-hcCCCCCCCCCCCCCcccccccCCCCCCChHHHHHHHHHHH
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGEMS-SFMQIFEGLI-KNDSTVNADDDYDIKPYYSDYLSDIDDLDDVEMQRMEEARE 259 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~eIs-slm~~fe~lt-~n~S~~~~~~d~d~~p~~~d~l~~~d~~~~~e~~kmE~aR~ 259 (299)
++.=..-..++++-|+..|+..+-|++ +|....+.|. +-+...-. .+ . -+.- .-+.+. .+|..|.
T Consensus 105 ~~~~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~--~~--l--~~~~------ekK~e~-sLe~eR~ 171 (438)
T COG4487 105 LELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNE--ER--L--KFEN------EKKLEE-SLELERE 171 (438)
T ss_pred HHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HH--H--HHHH------HHHHHh-hHHHHHH
Confidence 554334568899999999999999998 4777777665 11111110 00 0 0000 112222 2888999
Q ss_pred HHHHHHHHh
Q 022306 260 AYITAVAMA 268 (299)
Q Consensus 260 aY~aAvaaA 268 (299)
.|.+.+-.|
T Consensus 172 k~~~ql~~~ 180 (438)
T COG4487 172 KFEEQLHEA 180 (438)
T ss_pred HHHHHHHHh
Confidence 998888777
No 206
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=61.15 E-value=2.7 Score=43.95 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKR---LAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 185 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~---~laeKe~likStq~QLsdaki~LadKqAaLEKlewE 185 (299)
|...|+-.++||-+=+.+=+.++.+..+-..+..+.-.|-. .+......|.....|+.+-+.+|.+..--.++++.|
T Consensus 313 lE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e 392 (713)
T PF05622_consen 313 LENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFE 392 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555444444444444333332222222222 223355667777788888889999998889999999
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 186 AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 186 ~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
...-..|++.|+.+-..+..+...|....+.|.
T Consensus 393 ~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~ 425 (713)
T PF05622_consen 393 NKQLEEKLEALEEEKERLQEERDSLRETNEELE 425 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999888888888888877666554
No 207
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=61.08 E-value=18 Score=35.82 Aligned_cols=118 Identities=19% Similarity=0.224 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH-------HhhhhH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK-------IKLADK 175 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdak-------i~LadK 175 (299)
+|.|.+|+--++.|+.-+. .+...+-.+..+++.+...|++++-.|..=..=|.+.|..|.+-. -.+.+.
T Consensus 34 ~eRLsaLEssv~sL~~SVs---~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h 110 (326)
T PF04582_consen 34 RERLSALESSVASLSDSVS---SLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDH 110 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhh
Confidence 3455555544444444432 122233333344444444444444444443344444444333322 233334
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCC
Q 022306 176 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDST 223 (299)
Q Consensus 176 qAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~ 223 (299)
+-+|-.|+-.+-.-..-|.-|+.+|+++...|+.|..-+..|....+.
T Consensus 111 ~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 111 SSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCC
Confidence 455555666666666778889999999999999999999988844333
No 208
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=61.04 E-value=1.5e+02 Score=29.27 Aligned_cols=78 Identities=26% Similarity=0.271 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH-HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ-AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq-AaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
--+|..+.+.+.++++++.+=-..| +.+ +.+.+.+++.+ ++|++-.-.+.....+....|.++..|+-|+.+.+.
T Consensus 312 ~p~~~~~~~q~~~~~~~~~~e~~~~--~~~--~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~ 387 (458)
T COG3206 312 HPQLVALEAQLAELRQQIAAELRQI--LAS--LPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARS 387 (458)
T ss_pred ChHHHhHHHHHHHHHHHHHHHHHHH--HHh--chhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHH
Confidence 3455566666666666655432222 111 22235566666 888888888888888889999999999888886655
Q ss_pred HHh
Q 022306 213 IFE 215 (299)
Q Consensus 213 ~fe 215 (299)
.++
T Consensus 388 ~ye 390 (458)
T COG3206 388 LYE 390 (458)
T ss_pred HHH
Confidence 555
No 209
>PRK12704 phosphodiesterase; Provisional
Probab=60.91 E-value=2.1e+02 Score=29.68 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=27.3
Q ss_pred HHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 022306 148 KRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQG 205 (299)
Q Consensus 148 r~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~ 205 (299)
+..+..+|.-+..-..+|......|..++..|+..+-++-.....+++++.+++.+..
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~ 138 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444555544444444444444444444444444433
No 210
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.76 E-value=2.8 Score=45.27 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=0.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH--
Q 022306 99 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ-- 176 (299)
Q Consensus 99 ~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq-- 176 (299)
-.+..+.+..|.+||+.||+. |..+=+.=..+..++..+.+.||.+.+.-.+=+..++.+..||.+.+.++.+..
T Consensus 126 rkkh~~~~~eL~eqle~lqk~---k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~ 202 (859)
T PF01576_consen 126 RKKHQDAVAELNEQLEQLQKQ---KAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQ 202 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Confidence 355667888899999999875 344444555667888888999998888888888888888888777777665544
Q ss_pred -----HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 177 -----AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 177 -----AaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
....+|+-|+-.-...+++++..++.+....++|..+++.+.
T Consensus 203 ~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk 249 (859)
T PF01576_consen 203 RNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELK 249 (859)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455566666666666666666666666666666666666443
No 211
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=60.47 E-value=76 Score=24.43 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
+.++..+..|+..|...+.+=+.+++.++.+
T Consensus 11 ~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l 41 (106)
T PF01920_consen 11 NQQLQQLEQQIQQLERQLRELELTLEELEKL 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566667777777777777666666666665
No 212
>PRK00106 hypothetical protein; Provisional
Probab=60.34 E-value=2.3e+02 Score=29.88 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=34.4
Q ss_pred HHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 022306 150 LAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 207 (299)
Q Consensus 150 ~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eI 207 (299)
.+..+|.-+..-..+|......|..++..|++.+-++-.....++.++.+++.+..+-
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~ 155 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQK 155 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555556666666666666666666666666666666666655554443
No 213
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=60.20 E-value=1.7e+02 Score=28.44 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKM-----FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST 161 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL-----~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likSt 161 (299)
....+..++.|++.|+... .+...+.........++..++..+..+..++.....+++..
T Consensus 101 ~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~ 165 (421)
T TIGR03794 101 SYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRG 165 (421)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777888887776422 11222222333344555555666666555555555555544
No 214
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=59.89 E-value=1.4e+02 Score=27.31 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=21.1
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 162 QLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 162 q~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
+.-|..++.-|.+-....+..+.|+.....=++.-+..++.+..++..-+.=|
T Consensus 115 ~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~ 167 (188)
T PF05335_consen 115 KAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADY 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444433333333334444444444333333
No 215
>PRK11546 zraP zinc resistance protein; Provisional
Probab=59.80 E-value=32 Score=30.42 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHH
Q 022306 108 ALREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAEKDS 156 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~~laeKe~ 156 (299)
.-..+..+|+.+||.|..-|+.+-.. .+.|+++..+|-.|+.+|.++-.
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999988666 36688888888888877776644
No 216
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=59.54 E-value=1.3e+02 Score=30.46 Aligned_cols=93 Identities=27% Similarity=0.310 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH--HHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK--QAALEKS 182 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadK--qAaLEKl 182 (299)
-|..+.+..++|.+.|...+= + +-..++..+....-+|.. +.++=.=.+.++.+|.+++.+|++. .-+.|=+
T Consensus 8 kl~~~~~r~~el~~~L~~p~v-~----~d~~~~~~lske~a~l~~-iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema 81 (363)
T COG0216 8 KLESLLERYEELEALLSDPEV-I----SDPDEYRKLSKEYAELEP-IVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMA 81 (363)
T ss_pred HHHHHHHHHHHHHHHhcCccc-c----cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 355566677777777776651 1 111223333333323222 1222233567889999999999963 2334456
Q ss_pred HHHHHHhhhHHHHHHHHHhhh
Q 022306 183 QWEAMTVSRKAEKLQEEVESM 203 (299)
Q Consensus 183 ewE~~~sn~Kve~Lq~dl~~m 203 (299)
+-|+..-..+.+.|+.+|..|
T Consensus 82 ~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 82 EEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667766667777777766543
No 217
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=59.39 E-value=52 Score=26.15 Aligned_cols=63 Identities=27% Similarity=0.409 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--------------------------------------------------
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSK-------------------------------------------------- 134 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~-------------------------------------------------- 134 (299)
++..|+.+++.|+..+.|=+.++.+++.+.
T Consensus 4 ~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~ 83 (120)
T PF02996_consen 4 ELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLK 83 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHH
Confidence 345667777777777777666766666652
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 167 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsd 167 (299)
.++..+.++++.+..++.+...-|..++..+..
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666665555543
No 218
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=58.57 E-value=93 Score=24.82 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
..-|.+-++.-+-.-....++|+.++..++.+|..+...++.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444544444445555666666666666666665555543
No 219
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.52 E-value=82 Score=28.32 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=6.9
Q ss_pred hHHHHHHHHHhhhhh
Q 022306 191 RKAEKLQEEVESMQG 205 (299)
Q Consensus 191 ~Kve~Lq~dl~~m~~ 205 (299)
.+++.|..++.....
T Consensus 135 ~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555554444433
No 220
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=58.00 E-value=1.3e+02 Score=26.36 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022306 134 KSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 134 ~~em~a~~akvDELr~~lae 153 (299)
..+...++..||.|+.++.+
T Consensus 79 r~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 79 RSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666665554
No 221
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=57.97 E-value=19 Score=32.45 Aligned_cols=44 Identities=32% Similarity=0.288 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh---HHhhHHHHhh
Q 022306 129 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ---LQLSDAKIKL 172 (299)
Q Consensus 129 Sae~~~~em~a~~akvDELr~~laeKe~likStq---~QLsdaki~L 172 (299)
|+|.++..+|.+...---|-.+|.|||.|...+| .+|+|.|+.|
T Consensus 1 SLeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899988888889999999999988877 6888998888
No 222
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=57.70 E-value=2.3e+02 Score=29.06 Aligned_cols=81 Identities=12% Similarity=0.243 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHhH
Q 022306 102 EIEELVALREQVEDLQRK-------------MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEK-----DSLIKSTQL 163 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkK-------------L~EKDelLkSae~~~~em~a~~akvDELr~~laeK-----e~likStq~ 163 (299)
-++.+..+++||.-++.- -..|..|-.-...+.+++..|+..|++||+-|+.+ ...+++++.
T Consensus 174 ~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~k 253 (424)
T PF03915_consen 174 VKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAK 253 (424)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHH
Confidence 455566666666655441 12455666666777899999999999999999886 578899999
Q ss_pred HhhHHHHhhhhHHHHHHHH
Q 022306 164 QLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKl 182 (299)
+|..+...|.+++.-+..+
T Consensus 254 di~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 254 DISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888763
No 223
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=57.59 E-value=2.4e+02 Score=31.10 Aligned_cols=82 Identities=24% Similarity=0.330 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH-------HH--HHHHh-----hhHHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS-------QW--EAMTV-----SRKAEKLQEEV 200 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl-------ew--E~~~s-----n~Kve~Lq~dl 200 (299)
.++..+...-+.|.-.+..=..-+++++.||+++...|++.++-|+-+ |- +.|+. .++...++.++
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~ 675 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA 675 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 444444444455555555555677888888888888888777776642 22 22221 12233345566
Q ss_pred hhhhhhHHHHHHHHhh
Q 022306 201 ESMQGEMSSFMQIFEG 216 (299)
Q Consensus 201 ~~m~~eIsslm~~fe~ 216 (299)
..++..|++|-.-|++
T Consensus 676 ~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 676 EELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666665554
No 224
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=56.83 E-value=41 Score=28.60 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 022306 108 ALREQVEDLQRKMFEKDELL 127 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelL 127 (299)
.|.|.|++|+..|.-|++|+
T Consensus 39 ~lkEEi~eLK~ElqRKe~Ll 58 (106)
T PF11594_consen 39 VLKEEINELKEELQRKEQLL 58 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666
No 225
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=56.81 E-value=64 Score=31.85 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH---HHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Q 022306 103 IEELVALREQVEDLQRKMFEKDE---LLK--------SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQL 163 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDe---lLk--------Sae~~~~em~a~~akvDELr~~laeKe~likStq~ 163 (299)
.+|+.++.++-|-|++-+.|=+- -|+ +++.+...+|-+-.++-.|..+|-||+.|+.|+|-
T Consensus 97 eddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqR 168 (333)
T KOG1853|consen 97 EDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQR 168 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45788888888888876655432 232 45666788888888999999999999999998875
No 226
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.62 E-value=1.2e+02 Score=25.44 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH----HHHHHHHhhhHHHHHHHHHhhhhhhH
Q 022306 144 LDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK----SQWEAMTVSRKAEKLQEEVESMQGEM 207 (299)
Q Consensus 144 vDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK----lewE~~~sn~Kve~Lq~dl~~m~~eI 207 (299)
|-.||.++.+-..-|..++.++..|+..|...+.+.+- |+-|+-....++++|...=.-+-.+|
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555556666666666666665555432 56666667777777765544443333
No 227
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=56.32 E-value=3.6e+02 Score=30.99 Aligned_cols=172 Identities=20% Similarity=0.195 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------------------------------HHHHHHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSK------------------------------------SQVNAVHLKLDE 146 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~------------------------------------~em~a~~akvDE 146 (299)
-.||+-||+.-..|++++-.|.+-|..++..+ .+-+++....|-
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r 259 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDR 259 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHH
Confidence 45899999999999999999999998888774 555666666666
Q ss_pred HHHHHHhhHHHHHHHhHHhhHHHHhhhh----HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCC
Q 022306 147 LKRLAAEKDSLIKSTQLQLSDAKIKLAD----KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDS 222 (299)
Q Consensus 147 Lr~~laeKe~likStq~QLsdaki~Lad----KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S 222 (299)
++.++.+.+-=++ -+.+.++-|-+ --+-.-++..+..+.+.|+....+.+..++.+|-.....++.+-.+-
T Consensus 260 ~k~~~r~l~k~~~----pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~- 334 (1072)
T KOG0979|consen 260 AKKELRKLEKEIK----PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA- 334 (1072)
T ss_pred HHHHHHHHHHhhh----hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6666655433221 12222222222 12222336677777777777777777777777776666665433110
Q ss_pred CCCC------CCCCCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHH
Q 022306 223 TVNA------DDDYDIKPYYSDYLSDIDDLDDVEMQRMEEAREAYITAVAMAKEKQDEESMAT 279 (299)
Q Consensus 223 ~~~~------~~d~d~~p~~~d~l~~~d~~~~~e~~kmE~aR~aY~aAvaaAKenp~eEsl~~ 279 (299)
.... ..+.+..--++........+-..+-+-+=+.+.-|..++.-+++.-|.+.+.+
T Consensus 335 ~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~ 397 (1072)
T KOG0979|consen 335 EKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKS 397 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 0000 01111111122222222222233333344455667777777777777666554
No 228
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=56.09 E-value=1.7e+02 Score=27.20 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=15.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 195 KLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 195 ~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
++-.+|..+..+|..++..|..-.
T Consensus 132 k~~~~l~~l~~~v~~l~~~~~~~~ 155 (256)
T PF14932_consen 132 KLNNELNQLLGEVSKLASELAHAH 155 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666677777776666543
No 229
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=56.03 E-value=2.8e+02 Score=31.82 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 184 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlew 184 (299)
-+.....+.+.|.++.++..-+..++.+|.++......-+++ ++++.+.
T Consensus 200 ~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~--~~~~~~~ 248 (1109)
T PRK10929 200 NNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAER--ALESTEL 248 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344556667777777777777777777777777655544444 4444443
No 230
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=55.87 E-value=2.2e+02 Score=30.22 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022306 133 SKSQVNAVHLKLDELKR-------LAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEE 199 (299)
Q Consensus 133 ~~~em~a~~akvDELr~-------~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~d 199 (299)
++.=||.|...|++|-- +-.|=+..++.+|--|.+.+.-|.+....-|-||-|+++...-.-.||+.
T Consensus 360 fvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 360 FVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 35667777777777642 11233455667777777777777777777777777777665555556554
No 231
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=55.80 E-value=1.2e+02 Score=25.44 Aligned_cols=96 Identities=16% Similarity=0.265 Sum_probs=62.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHH---
Q 022306 117 QRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKA--- 193 (299)
Q Consensus 117 qkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kv--- 193 (299)
++-+.-.+.+...+..+..++..+...+.-|+.++++.+.-+.+.+.....++..+...+.++-...-|+..-...+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777777777788888888888888888888888878777777777777777666655544444333222
Q ss_pred -HHHHHHHhhhhhhHHHHHH
Q 022306 194 -EKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 194 -e~Lq~dl~~m~~eIsslm~ 212 (299)
.....|+--.+-||..|..
T Consensus 128 ~tq~~~e~rkke~E~~kLk~ 147 (151)
T PF11559_consen 128 KTQYEHELRKKEREIEKLKE 147 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 2334444445555555443
No 232
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=55.42 E-value=1.2e+02 Score=25.32 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=8.9
Q ss_pred HHHHHhhhhhhHHHHHHHHh
Q 022306 196 LQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 196 Lq~dl~~m~~eIsslm~~fe 215 (299)
|..++..++.+|..|....+
T Consensus 64 lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 233
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.07 E-value=3e+02 Score=31.20 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=46.6
Q ss_pred HHHHHHHhhHHHHHHHhHHhhHHH-------HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 146 ELKRLAAEKDSLIKSTQLQLSDAK-------IKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 146 ELr~~laeKe~likStq~QLsdak-------i~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
-+-+++.+|+..|++.+.--.+|. ..+.+.+-.+|-+.. ..+-.+....+|.++..++.+|+++-.-...++
T Consensus 755 ~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~-l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a 833 (970)
T KOG0946|consen 755 LLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN-LSEESTRLQELQSELTQLKEQIQTLLERTSAAA 833 (970)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344666777777777766555433 345666666666655 666677777777777777777777655444444
No 234
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=55.03 E-value=1.5e+02 Score=28.06 Aligned_cols=28 Identities=25% Similarity=0.295 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 181 KSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
+|+-|+-...++.+..|+++..|+-++.
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 235
>PRK04325 hypothetical protein; Provisional
Probab=54.74 E-value=1e+02 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 022306 138 NAVHLKLDELKRLAAEKDSLIKSTQLQ 164 (299)
Q Consensus 138 ~a~~akvDELr~~laeKe~likStq~Q 164 (299)
+.+...|++|.-.+|-=|-.|..++..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~v 31 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNAT 31 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333
No 236
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.71 E-value=1.1e+02 Score=31.39 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=10.2
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHH
Q 022306 161 TQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 161 tq~QLsdaki~LadKqAaLEKle 183 (299)
++..|.....+++|....|++|+
T Consensus 85 s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 85 TADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHhHHHHHHhhHHHHHHHHHHHH
Confidence 33444444444444444444443
No 237
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=54.55 E-value=3.3e+02 Score=31.97 Aligned_cols=109 Identities=19% Similarity=0.188 Sum_probs=75.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHhHHhhHHHHhh
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKD---------SLIKSTQLQLSDAKIKL 172 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe---------~likStq~QLsdaki~L 172 (299)
++++.-.|.++|...++++.|.+--++-++....++..+..+...+..++..=. +.+. .+-.+++...++
T Consensus 235 ~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~-l~~~~~n~~~~~ 313 (1294)
T KOG0962|consen 235 SKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEE-LGELLSNFEERL 313 (1294)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHH-HHHHHHhHHHHH
Confidence 667777777888888888888888888777777777777777766666654321 2222 334577788888
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 022306 173 ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 211 (299)
Q Consensus 173 adKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm 211 (299)
.+++-.+..+|.+...-|.--..|...-..+..+++.+.
T Consensus 314 ~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq 352 (1294)
T KOG0962|consen 314 EEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQ 352 (1294)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877777666666666666666666443
No 238
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.38 E-value=1.5e+02 Score=26.02 Aligned_cols=72 Identities=24% Similarity=0.337 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH
Q 022306 105 ELVALREQVEDLQRKM----FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ 176 (299)
Q Consensus 105 El~~LreQVeeLqkKL----~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq 176 (299)
+-..|.-.|+-|.+.| -++.++..-+|+++.++..+..+|..|...+..=+.=+-++-++--+--.+|..||
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666665 34666777777777777777777776665554433333333333333333333333
No 239
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.36 E-value=2.5e+02 Score=30.45 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLESSK 134 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae~~~ 134 (299)
...|..++.-|++.|-.|||.+..+|.-.
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777878887777776644
No 240
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=54.25 E-value=45 Score=29.03 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=19.0
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 183 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 183 ewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+-.+.+-..-+.+||.++...+.||..|+..|+.+.
T Consensus 86 qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 86 QSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555666666666665444
No 241
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.22 E-value=4.2 Score=42.59 Aligned_cols=54 Identities=19% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST 161 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likSt 161 (299)
....|.+++++|+.++..-+ ..+..+..++.+++..++++++.+.+++..|.+.
T Consensus 165 ~~~~l~~~~~~l~~~~~~~e---~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 165 EISSLKNELSELERQAENAE---SQIQSLESELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554432222 2233333444444445555555444444444443
No 242
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.95 E-value=1.6e+02 Score=33.90 Aligned_cols=104 Identities=17% Similarity=0.299 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl 182 (299)
.+||..+...|..++..+-.++..++-.. .+...+...+-.+-+.+++|+..+-. +-+|=..+..-+.+.+-|+.+
T Consensus 233 ~~els~~~~ei~~~~~~~d~~e~ei~~~k---~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~ 308 (1141)
T KOG0018|consen 233 NDELSRLNAEIPKLKERMDKKEREIRVRK---KERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEI 308 (1141)
T ss_pred hHHHHHHhhhhHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHh
Confidence 34555555555555555555444433322 22222222333333445555555555 556666777777888888888
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 183 QWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 183 ewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
+..+-+..+....+..++..++-+|-++
T Consensus 309 ~k~i~~~kk~~~~~~~~ie~~ek~l~av 336 (1141)
T KOG0018|consen 309 EKDIETAKKDYRALKETIERLEKELKAV 336 (1141)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888888888877654
No 243
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=53.92 E-value=1.2e+02 Score=24.65 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 022306 179 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 209 (299)
Q Consensus 179 LEKlewE~~~sn~Kve~Lq~dl~~m~~eIss 209 (299)
++.++-.+..-+++.+.|+..+..++..|..
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666665543
No 244
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.61 E-value=1.9e+02 Score=29.83 Aligned_cols=105 Identities=15% Similarity=0.236 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEK---DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EK---DelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK 181 (299)
++..+|+..+.++++|..+ ...+..+-.+..+...+..++++|+++ +..+-+.++ .+.. -+.+ ....
T Consensus 3 d~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~---rn~~sk~ig----~~~~-~~~~--~~~~ 72 (429)
T COG0172 3 DLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAE---RNELSKEIG----RALK-RGED--DAEE 72 (429)
T ss_pred hHHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHhh-ccch--hHHH
Confidence 3456777888888888777 344555666667777777777777743 333333333 1111 1111 4566
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhh
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIK 219 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~ 219 (299)
+--|+..-+++++.+..++..+..++..++.-|-+|..
T Consensus 73 l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~ 110 (429)
T COG0172 73 LIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPH 110 (429)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCc
Confidence 77788888999999999999999999999999988873
No 245
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=53.52 E-value=95 Score=23.42 Aligned_cols=14 Identities=14% Similarity=0.247 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 022306 136 QVNAVHLKLDELKR 149 (299)
Q Consensus 136 em~a~~akvDELr~ 149 (299)
++...+.-++-|..
T Consensus 46 ~~~~~~~~~~~l~~ 59 (123)
T PF02050_consen 46 QLRNYQRYISALEQ 59 (123)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 246
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=53.15 E-value=2.9e+02 Score=28.90 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=28.8
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 022306 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 211 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm 211 (299)
.+.-|+..|+-.++--..|+-++.+-..---+|.++..++..+-+.|+
T Consensus 131 n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 131 NLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555666666666666666666666666655555
No 247
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.13 E-value=3e+02 Score=29.04 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022306 135 SQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 135 ~em~a~~akvDELr~~lae 153 (299)
..+..++.|++.+.+++.+
T Consensus 382 ~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443
No 248
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=53.00 E-value=60 Score=25.75 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022306 132 SSKSQVNAVHLKLDELK 148 (299)
Q Consensus 132 ~~~~em~a~~akvDELr 148 (299)
.+..+.|.+.++|-.++
T Consensus 47 ~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 47 ELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHHHHh
Confidence 33333344443333333
No 249
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=52.82 E-value=1.9e+02 Score=26.54 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQ 117 (299)
Q Consensus 105 El~~LreQVeeLq 117 (299)
.+.....|.....
T Consensus 25 ~~~~~~~~~~~~~ 37 (251)
T PF11932_consen 25 QAQQVQQQWVQAA 37 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444433333
No 250
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=52.74 E-value=1.5e+02 Score=25.55 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHH
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLES----SKSQVNAVHLKLDELKRLAAEKDS 156 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~----~~~em~a~~akvDELr~~laeKe~ 156 (299)
-.|.++|-+|......|+.=+.++.. +.+++-.+..+|.+++..+.+.+.
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34555555666666666555544432 234445555555555555544443
No 251
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=52.59 E-value=21 Score=37.21 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=20.9
Q ss_pred HhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 188 TVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 188 ~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
..|.-+.+|..++.+.+..+.+|....+
T Consensus 80 ~T~d~~~~~~qqiAn~~lKv~~l~da~~ 107 (514)
T PF11336_consen 80 LTNDDATEMRQQIANAQLKVESLEDAAE 107 (514)
T ss_pred cChHHHHHHHHHHHhhhhhHHHHhhHHh
Confidence 3566777777888888777777777776
No 252
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=52.59 E-value=3.1e+02 Score=28.98 Aligned_cols=44 Identities=16% Similarity=0.050 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022306 111 EQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEK 154 (299)
Q Consensus 111 eQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeK 154 (299)
+|++..+..+-++=.-++++++-.+.+.++..-++-..+|+..|
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k 390 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTK 390 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444434444443344444444444444444333
No 253
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=52.52 E-value=1.3e+02 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
..++..|+.+++.|+..+.|=+.++.+++.+
T Consensus 12 ~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00584 12 QQEIEELQQELARLNEAIAEYEQAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666665555555555
No 254
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.27 E-value=1.1e+02 Score=23.91 Aligned_cols=47 Identities=30% Similarity=0.290 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 104 EELVALREQVEDLQRKM----FEKDELLKSLESSKSQVNAVHLKLDELKRL 150 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL----~EKDelLkSae~~~~em~a~~akvDELr~~ 150 (299)
+-+..|+..|++|+.+- .+.++|-...+.++.+-++.+..|+.|-..
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666652 344555555555666666666666555443
No 255
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=51.95 E-value=2.3e+02 Score=32.63 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEK----DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA 177 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EK----DelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqA 177 (299)
.+.++..|++.++++.+.+.+- |-++--+....++.+++....+.|++++.-.---..-.|..|+-..-+|.+-..
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~ 755 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKT 755 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555555555555544433 223333344456777777777777777776665555566666665556655555
Q ss_pred HHHHHH
Q 022306 178 ALEKSQ 183 (299)
Q Consensus 178 aLEKle 183 (299)
.+.+++
T Consensus 756 ~l~~~~ 761 (1200)
T KOG0964|consen 756 SLHKLE 761 (1200)
T ss_pred HHHHHH
Confidence 555554
No 256
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=51.75 E-value=80 Score=25.38 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ 162 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq 162 (299)
|+++..+-.+|..||+.+ ..++.....+.+++.|||.+-.+|..=+.-+.+.|
T Consensus 10 r~dIk~vd~KVdaLq~~V-------~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQV-------DDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777776666 22233333444445555554444444333333333
No 257
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=51.62 E-value=1.2e+02 Score=24.21 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
++..|..++..|...+.|=+-+++.++.+
T Consensus 14 ~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 14 QLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444444444444444443
No 258
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=51.58 E-value=90 Score=33.29 Aligned_cols=54 Identities=24% Similarity=0.195 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HhHHhhHHHHhhhhHHHHHHHHHH
Q 022306 131 ESSKSQVNAVHLKLDELKRLAAEKDSLIKS---TQLQLSDAKIKLADKQAALEKSQW 184 (299)
Q Consensus 131 e~~~~em~a~~akvDELr~~laeKe~likS---tq~QLsdaki~LadKqAaLEKlew 184 (299)
..+-+++..++.|+-.++.+..+.+.+++. .|-||..-.-.|-||.|-.....-
T Consensus 236 skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~ 292 (596)
T KOG4360|consen 236 SKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLH 292 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466666666666666666666555432 344555555555555554444433
No 259
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=51.45 E-value=1.5e+02 Score=25.00 Aligned_cols=68 Identities=28% Similarity=0.354 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH-----------HHHHHHHhhhHHHHHHHHH
Q 022306 133 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK-----------SQWEAMTVSRKAEKLQEEV 200 (299)
Q Consensus 133 ~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK-----------lewE~~~sn~Kve~Lq~dl 200 (299)
+.+.+..+..+++++.++++--..-...++.++..+...+..-...+.+ .+-|+...+.=+++|++-|
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555444444444443 3345555555555555443
No 260
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=51.43 E-value=3.8e+02 Score=29.76 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQ 204 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~ 204 (299)
.+++.-..+|-.|.-++.+||-=|+-+...|.+.+-..+..|..-....-=++.++.+.+.|..+|....
T Consensus 233 ~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K 302 (786)
T PF05483_consen 233 KEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIK 302 (786)
T ss_pred HHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666665544444446778888888888887544
No 261
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=51.24 E-value=2.4e+02 Score=27.64 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=21.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHH---HHHHHHHhhhhhhHH
Q 022306 171 KLADKQAALEKSQWEAMTVSRKA---EKLQEEVESMQGEMS 208 (299)
Q Consensus 171 ~LadKqAaLEKlewE~~~sn~Kv---e~Lq~dl~~m~~eIs 208 (299)
...+-+.+|.+|+||+-.+...+ ++|+.....+..+|.
T Consensus 85 ~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~ 125 (355)
T PF09766_consen 85 EDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENK 125 (355)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888887777433 334444444444444
No 262
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=51.16 E-value=1.1e+02 Score=23.51 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 108 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE-KDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~lae-Ke~likStq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
.|...++.|+.+.-+....+..++.. +..+....+..+..+.. =+.|+..++ ..+..+|.+|+++-
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~---~~~l~~~~~~~~~~I~~~f~~l~~~L~----------~~e~~ll~~l~~~~ 70 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISI---IQEVEENAADVEAQIKAAFDELRNALN----------KRKKQLLEDLEEQK 70 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 45666777776666665555555443 33333444444444421 123332221 23567788888887
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 187 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 187 ~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.............+...-..+.+...+.+.+-
T Consensus 71 ~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 71 ENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554444444444444445555555444
No 263
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=51.08 E-value=2.5e+02 Score=28.94 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLE--------------------SSKSQVNAVHLKLDELKRLAAEKDSLIKST 161 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae--------------------~~~~em~a~~akvDELr~~laeKe~likSt 161 (299)
-.+-+.-.+++|+.-+.+|.+=-..|.... .+..++..+.++++.|+..+++-.--|..+
T Consensus 240 r~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l 319 (434)
T PRK15178 240 QKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRL 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHH
Confidence 345566666777766666665444443332 224555555666666655444444444444
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHH---HHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 162 QLQLSDAKIKLADKQAALEKSQWEAMTVSRKA---EKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 162 q~QLsdaki~LadKqAaLEKlewE~~~sn~Kv---e~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+.+...-+..++.-++-|---- ..-..|.++ +.|..|..--+....+=+.-|++-.
T Consensus 320 ~~rI~aLe~QIa~er~kl~~~~-g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR 378 (434)
T PRK15178 320 SAKIKVLEKQIGEQRNRLSNKL-GSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGK 378 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333322222222222110000 000113344 6666666666666666666666444
No 264
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.04 E-value=81 Score=29.31 Aligned_cols=87 Identities=14% Similarity=0.289 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKS-LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkS-ae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
|.+.|+-|+-+|-.+|..-...-.. .....+....+..++ +.|+++-+-||.+.+-
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~----------EqLL~YK~~ql~~~~~------------- 153 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREF----------EQLLDYKERQLRELEE------------- 153 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHH----------HHHHHHHHHHHHhhhc-------------
Confidence 5566766666666655544333332 111223333333332 3345555566655432
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
..-..+.-+..+.+||++++.+|..|...|.
T Consensus 154 -~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 154 -GRSKSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred -cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234456677778888888888887777664
No 265
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=50.54 E-value=1.1e+02 Score=23.13 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 174 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~Lad 174 (299)
.-+..+...|+.++..+..-+.-+...+..|.+|.+..--
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333
No 266
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=50.16 E-value=1.6e+02 Score=29.38 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHH-HhhhHHHHHHHHHhhhhh
Q 022306 127 LKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAM-TVSRKAEKLQEEVESMQG 205 (299)
Q Consensus 127 LkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~-~sn~Kve~Lq~dl~~m~~ 205 (299)
++..+.+..+-..++++-...++.+.+=..+...-.+.++-.+..|-+..+.|.+++-.+. .....+++|++++...++
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555666666667777777777777754322 345567777777777666
Q ss_pred hHHHHH
Q 022306 206 EMSSFM 211 (299)
Q Consensus 206 eIsslm 211 (299)
.+.-.-
T Consensus 83 ~l~DmE 88 (330)
T PF07851_consen 83 QLFDME 88 (330)
T ss_pred hHHHHH
Confidence 655444
No 267
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=49.04 E-value=1.2e+02 Score=32.03 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 190 SRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
..|+..|+..+...+.++.+|..+++.|+
T Consensus 384 ~~~l~~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 384 DSQFAQLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444443
No 268
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=48.98 E-value=3.9e+02 Score=29.13 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 140 VHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 140 ~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
+...++++...+......+.-.+-++...+..+....+.++++.-.+......+..++..++.+...+..+-.....
T Consensus 366 l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 366 LEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333444444445555555556666666666666666666666666666666666555544444
No 269
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=48.53 E-value=3.7e+02 Score=28.78 Aligned_cols=46 Identities=33% Similarity=0.416 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022306 108 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~lae 153 (299)
.|.+.+++++....+...+|.++++-+.-++-+-++--+|+.+|+|
T Consensus 126 ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~E 171 (617)
T PF15070_consen 126 ELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAE 171 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHH
Confidence 3344555555555555556665555543333333333455555544
No 270
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=48.35 E-value=1e+02 Score=29.65 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=43.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 022306 120 MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 174 (299)
Q Consensus 120 L~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~Lad 174 (299)
|--||+-.+++=-+.-+-..++..++-|+..|..+|+-|+-+|-+|-+|.+.|+-
T Consensus 52 l~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtt 106 (272)
T KOG4552|consen 52 LDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTT 106 (272)
T ss_pred HHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555556666777888999999999999999999999999988863
No 271
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=47.95 E-value=5e+02 Score=30.13 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=6.7
Q ss_pred hhhhhhHHHHHHHHh
Q 022306 201 ESMQGEMSSFMQIFE 215 (299)
Q Consensus 201 ~~m~~eIsslm~~fe 215 (299)
+.+..+|..+...|.
T Consensus 788 ~kLn~eI~~l~~kl~ 802 (1200)
T KOG0964|consen 788 SKLNKEINKLSVKLR 802 (1200)
T ss_pred HHhhHHHHHHHHHHH
Confidence 334444444444444
No 272
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=47.87 E-value=2.2e+02 Score=30.58 Aligned_cols=108 Identities=23% Similarity=0.269 Sum_probs=80.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK 181 (299)
-+..+.+|+.++.+|++-..++-++++++.. -+.+|.+.++.+.+++..|..+-.+=+.+|-.|.-+++.+..
T Consensus 363 l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~-------K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~ 435 (632)
T PF14817_consen 363 LKASLNALRSECQRLKEAAAERQEALRSLQA-------KWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQE 435 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHH
Confidence 4556677788888888888888888776654 466788889999999999999999999999999888876654
Q ss_pred -HHHHHHHhhhHH-HHHHHHHhhhhhhHHHHHHHHhh
Q 022306 182 -SQWEAMTVSRKA-EKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 182 -lewE~~~sn~Kv-e~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
.+.-++-....| ..-+.-.+.++-|+..|-..+.+
T Consensus 436 ~~~~kl~P~~~~V~~~s~~l~~~ie~E~~~f~~~~l~ 472 (632)
T PF14817_consen 436 FVQRKLVPQFEAVAPQSQELRDCIEREVRAFQAIPLN 472 (632)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 455555444443 34455567788888888877764
No 273
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.69 E-value=39 Score=31.65 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=48.6
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhc
Q 022306 163 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 220 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n 220 (299)
.++..|+..+.-|+...+||.+==-.+..||.+...+|..-+.-...+...|+.|+.|
T Consensus 129 re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~n 186 (230)
T cd07625 129 RELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGN 186 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999987534446799999999999999999999999999955
No 274
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=47.52 E-value=1e+02 Score=28.61 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhh
Q 022306 102 EIEELVALREQVEDLQRKMFE 122 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~E 122 (299)
=+-||+.|.++|+..+++...
T Consensus 101 LkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566888888888888877765
No 275
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.50 E-value=2.2e+02 Score=28.72 Aligned_cols=8 Identities=13% Similarity=0.655 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 022306 112 QVEDLQRK 119 (299)
Q Consensus 112 QVeeLqkK 119 (299)
.|..|+++
T Consensus 72 ~~~~l~~~ 79 (525)
T TIGR02231 72 RLAELRKQ 79 (525)
T ss_pred HHHHHHHH
Confidence 33333333
No 276
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=47.34 E-value=20 Score=23.14 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 022306 105 ELVALREQVEDLQRKMFE 122 (299)
Q Consensus 105 El~~LreQVeeLqkKL~E 122 (299)
|+-.|+..|.||.++|.+
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 667778888888877754
No 277
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.24 E-value=2e+02 Score=32.39 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhHH-------
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESS------------------KSQVNAVHLKLDELKRLAAEKDS------- 156 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~------------------~~em~a~~akvDELr~~laeKe~------- 156 (299)
.......|.-++.+|.++|.+|+.+-+-...- ..++..++...+.|+.++..-.+
T Consensus 465 ~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~e 544 (913)
T KOG0244|consen 465 HPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGE 544 (913)
T ss_pred chHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhh
Confidence 34455668889999999999999998877752 25555666666666666655444
Q ss_pred ----HHHHHhHHhhHHHHhhhhHHHHHHH-----------HHHHHHHhhhHHHHHHH
Q 022306 157 ----LIKSTQLQLSDAKIKLADKQAALEK-----------SQWEAMTVSRKAEKLQE 198 (299)
Q Consensus 157 ----likStq~QLsdaki~LadKqAaLEK-----------lewE~~~sn~Kve~Lq~ 198 (299)
.|++.-.|.++-+..|-+.-..+.. .+|--+..++||.-++.
T Consensus 545 er~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~ 601 (913)
T KOG0244|consen 545 ERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRV 601 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666776666666655444432 45666666777766554
No 278
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=47.22 E-value=2.8e+02 Score=30.23 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLK----SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 175 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLk----Sae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadK 175 (299)
..+++..+.++.+|=..|-++--.+. .-..++.++..+.-.+++|+.+..+|-.-++-++.|+..-=..|+..
T Consensus 67 ~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 67 LQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34666666777777666666655555 33345788888888899999999988888888887776554444443
No 279
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.11 E-value=6.3 Score=41.30 Aligned_cols=75 Identities=33% Similarity=0.517 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 022306 104 EELVALREQVEDLQRKM--------FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 175 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL--------~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadK 175 (299)
+++..++++.+.++.+| .|+..++..+ ......++.++.+|+.++..-+..++.++.++...+..|...
T Consensus 128 ~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~---~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~ 204 (722)
T PF05557_consen 128 EELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEA---REEISSLKNELSELERQAENAESQIQSLESELEELKEQLEEL 204 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554 2333333322 234445666777777766666666666666666666665555
Q ss_pred HHHHHH
Q 022306 176 QAALEK 181 (299)
Q Consensus 176 qAaLEK 181 (299)
+..+..
T Consensus 205 ~~~~~e 210 (722)
T PF05557_consen 205 QSELQE 210 (722)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 554433
No 280
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=46.96 E-value=1.3e+02 Score=23.20 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=36.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcC
Q 022306 165 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 221 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~ 221 (299)
+.+...-+...+.-+..+.-|+-.--++++.+.+|+...-..+..+..-+..+..+.
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333344444444555666667777777777888887777777777777777666543
No 281
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=46.88 E-value=1.6e+02 Score=29.34 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLES 132 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~ 132 (299)
-++++..|+.++..++.++.+=+..|..+..
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455566666666666555554444444433
No 282
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.64 E-value=4.4e+02 Score=29.11 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 022306 111 EQVEDLQRKMFEKDELLKSLE 131 (299)
Q Consensus 111 eQVeeLqkKL~EKDelLkSae 131 (299)
.|+.+.++++.+++..|.+..
T Consensus 200 ~ql~~~~q~~~~~~~~l~e~~ 220 (716)
T KOG4593|consen 200 KQLQEENQKIQELQASLEERA 220 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 283
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.98 E-value=2.1e+02 Score=27.90 Aligned_cols=12 Identities=42% Similarity=0.686 Sum_probs=7.0
Q ss_pred HHHHHhhHHHHH
Q 022306 148 KRLAAEKDSLIK 159 (299)
Q Consensus 148 r~~laeKe~lik 159 (299)
...++||+.|++
T Consensus 145 ~E~~~EkeeL~~ 156 (290)
T COG4026 145 EELQKEKEELLK 156 (290)
T ss_pred HHHHHHHHHHHH
Confidence 334566777765
No 284
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=45.97 E-value=1e+02 Score=27.53 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=56.8
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCcccccccCCCCCC-ChHHHHHHHHHHHHHHHH
Q 022306 186 AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDIDDL-DDVEMQRMEEAREAYITA 264 (299)
Q Consensus 186 ~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~~d~l~~~d~~-~~~e~~kmE~aR~aY~aA 264 (299)
+-..+.|..+||+.|.++..=+-.|+.+.++.-+|..+..+.+--+-.||..+.....++- ...+...+-++|.--+..
T Consensus 40 ~~~aqdr~~kl~e~lr~i~~LFkkLRlIYekCne~~~~l~~~~iEsLIP~~~~~~~k~e~~~~s~~~~~~~~er~el~e~ 119 (150)
T PF11315_consen 40 QNMAQDRRNKLQEQLRTIKVLFKKLRLIYEKCNENCQGLEPTPIESLIPYKEEPRNKEEERDSSEEYRQLLEERKELIEQ 119 (150)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHhccccCCccccccccccchhhHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999876665533333467777766655442 344666677777765553
No 285
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=45.77 E-value=2.3e+02 Score=25.53 Aligned_cols=100 Identities=21% Similarity=0.313 Sum_probs=48.5
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHh
Q 022306 95 RALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSK---SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIK 171 (299)
Q Consensus 95 ~~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~---~em~a~~akvDELr~~laeKe~likStq~QLsdaki~ 171 (299)
++-+...-...+..|+.+|+.++.++.+-.+-|..+.... .+-..+-+++.+|+.++ +.++.+|. +-.
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~-------~~l~~el~--~~~ 130 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKEL-------KELKKELE--KYS 130 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-------HHHHHHHH--HHH
Confidence 3444444555777777777777777776666666654432 11122222222222222 22222222 111
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 022306 172 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQ 204 (299)
Q Consensus 172 LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~ 204 (299)
-.|- ..++++..++..--..++.--..+..|+
T Consensus 131 ~~Dp-~~i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 131 ENDP-EKIEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred hcCH-HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 1222 3566666666665556666555554444
No 286
>PF13514 AAA_27: AAA domain
Probab=45.67 E-value=4.8e+02 Score=29.20 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=21.7
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
++-++-.-...++.++.++..+..++..+...++.|.
T Consensus 894 l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~ 930 (1111)
T PF13514_consen 894 LEAELEELEEELEELEEELEELQEERAELEQELEALE 930 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444455556666666666666666666666665
No 287
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.65 E-value=42 Score=31.42 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=6.0
Q ss_pred HHHHHHHHHHH
Q 022306 257 AREAYITAVAM 267 (299)
Q Consensus 257 aR~aY~aAvaa 267 (299)
+...|-+|+..
T Consensus 142 e~~~Y~~A~~l 152 (263)
T PRK10803 142 ANTDYNAAIAL 152 (263)
T ss_pred HHHHHHHHHHH
Confidence 34556666654
No 288
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=45.17 E-value=2.2e+02 Score=25.09 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhh
Q 022306 112 QVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSR 191 (299)
Q Consensus 112 QVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~ 191 (299)
..+.|++-=.+||.+=.-++++..++-.++.....+-.+.--.-.-|..++.+++..-..|.+...-|.-+--|-..=.+
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777777777777666666666666666666666666666666666655665555555555555555555
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 192 KAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 192 Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
...++|+.++.+..-.++|..+++
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 555555555555555555555554
No 289
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=45.11 E-value=3.6e+02 Score=29.11 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH
Q 022306 122 EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK 169 (299)
Q Consensus 122 EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdak 169 (299)
+|++|-+.++.+.++|..+...|+.+.++++..|.=++-+-.+++|.+
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~ 127 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSR 127 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666666555555544
No 290
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=45.08 E-value=3.6e+02 Score=27.62 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHH----HHHHhhHHHHHHHhH
Q 022306 135 SQVNAVHLKLDELK----RLAAEKDSLIKSTQL 163 (299)
Q Consensus 135 ~em~a~~akvDELr----~~laeKe~likStq~ 163 (299)
......++.+.+.+ +-+..||.+|.++..
T Consensus 228 ~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 228 AEGESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 33344444555544 445566666666665
No 291
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=44.78 E-value=7.2 Score=40.39 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH--HHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 133 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE--KSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 133 ~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLE--KlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
+......+...+++|+.+..++-.-|+.++.|+.+-.-.|++.-..+. -+...-..|..+++.|+..|..++.|...=
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R 161 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERR 161 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 456777899999999999999999999999999887777776655442 123333445788888888888888888765
Q ss_pred HHHHhhhh
Q 022306 211 MQIFEGLI 218 (299)
Q Consensus 211 m~~fe~lt 218 (299)
...|..+.
T Consensus 162 ~~~v~~l~ 169 (619)
T PF03999_consen 162 LEEVRELR 169 (619)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55555443
No 292
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=44.54 E-value=4.8e+02 Score=28.93 Aligned_cols=99 Identities=21% Similarity=0.222 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH
Q 022306 103 IEELVALREQVEDLQRKMFEK-----DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA 177 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EK-----DelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqA 177 (299)
.-||-.||+.-+-|--+|--= -++-++=|....+...+....-.|.+.+.+++--+.++..||..|...+.+..-
T Consensus 477 ~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~e 556 (739)
T PF07111_consen 477 SLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTE 556 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 446777777666554444322 233456667778888899999999999999999999999999999999988877
Q ss_pred HHHHHHHHHHHhhhHHH-HHHHHHh
Q 022306 178 ALEKSQWEAMTVSRKAE-KLQEEVE 201 (299)
Q Consensus 178 aLEKlewE~~~sn~Kve-~Lq~dl~ 201 (299)
.-+-+-.|+-..-...+ .||+.|+
T Consensus 557 ea~~lR~EL~~QQ~~y~~alqekvs 581 (739)
T PF07111_consen 557 EAAELRRELTQQQEVYERALQEKVS 581 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665554333 4444444
No 293
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=44.46 E-value=3.2e+02 Score=26.88 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHH---
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAAL--- 179 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaL--- 179 (299)
|++-..+=.-|+++.-||.+ =|..++...+..+...|++.++.+.+=+.-|.+++.++..-+..+++.....
T Consensus 47 r~~A~~fA~~ld~~~~kl~~-----Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~ 121 (301)
T PF06120_consen 47 RQEAIEFADSLDELKEKLKE-----MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGY 121 (301)
T ss_pred HHHHHHHHHhhHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchH
Q ss_pred --------HHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhh
Q 022306 180 --------EKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIK 219 (299)
Q Consensus 180 --------EKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~ 219 (299)
..............+..+..|+.++.-.+....+|..++.
T Consensus 122 ~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~ 169 (301)
T PF06120_consen 122 IINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTE 169 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 294
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=44.37 E-value=1.9e+02 Score=24.20 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=24.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 022306 116 LQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 116 LqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLs 166 (299)
.|.--.+++.++.+.+.+-..--+....|+++|.++.++=.-++.++.+..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQ 79 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555566666665555555666666666666554444444444433
No 295
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.36 E-value=1.1e+02 Score=27.24 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=37.8
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 163 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
.+-.+-+.+|..|++.|.-|----..-..|+..|..|+..|+.++...+..|+
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666677777666555556667889999999999998887777776
No 296
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=44.31 E-value=2.5e+02 Score=27.92 Aligned_cols=74 Identities=15% Similarity=0.278 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHH---------------------HHHHHHHHHhhhHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAAL---------------------EKSQWEAMTVSRKA 193 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaL---------------------EKlewE~~~sn~Kv 193 (299)
..|..+..++|-|+++---|-|.+.|+..-|.-.|.+..+...-. +||.-++-.....|
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 457778889999999999999999999998888887766544332 33445555555555
Q ss_pred HHHHHHHhhhhhhHH
Q 022306 194 EKLQEEVESMQGEMS 208 (299)
Q Consensus 194 e~Lq~dl~~m~~eIs 208 (299)
.-|++.|++-.-+|.
T Consensus 98 ~~lEgQl~s~Kkqie 112 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIE 112 (307)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555554433333
No 297
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=44.31 E-value=1.8e+02 Score=35.67 Aligned_cols=96 Identities=25% Similarity=0.254 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESS---KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAAL 179 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~---~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaL 179 (299)
..-|..|..|-++|.++.++|---|..|... .....+++++||+|..++...| ++.-|.--++.|. ||
T Consensus 1347 ~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~~~~l~~le~qL~S~D-----~G~DL~Svn~llk-Kq--- 1417 (2473)
T KOG0517|consen 1347 EKKLRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADAKKKLDELESQLQSDD-----TGKDLTSVNDLLK-KQ--- 1417 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCcCcHHHHHHHH-HH---
Confidence 3457788889999999999998888877654 4666777888888877776665 2333333333332 22
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 022306 180 EKSQWEAMTVSRKAEKLQEEVESMQGEM 207 (299)
Q Consensus 180 EKlewE~~~sn~Kve~Lq~dl~~m~~eI 207 (299)
.-||||+-+.-.||+.|+..-..|..+-
T Consensus 1418 q~lEsem~~~~~kv~el~s~~~~ma~~~ 1445 (2473)
T KOG0517|consen 1418 QVLESEMEVRAQKVAELQSQAKAMAEEG 1445 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhccC
Confidence 2378999999999999998877776543
No 298
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=44.23 E-value=1.2e+02 Score=27.11 Aligned_cols=16 Identities=50% Similarity=0.565 Sum_probs=6.4
Q ss_pred hhHHHHhhhhHHHHHH
Q 022306 165 LSDAKIKLADKQAALE 180 (299)
Q Consensus 165 Lsdaki~LadKqAaLE 180 (299)
+..++..+...++.++
T Consensus 104 ~~~~~~~~~~~~~~l~ 119 (322)
T TIGR01730 104 LDDAKAAVEAAQADLE 119 (322)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 299
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=44.22 E-value=96 Score=30.59 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=43.3
Q ss_pred HHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 155 DSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 155 e~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
+.++.+++.++......+++..+.|++.. +...|...++..+.+.+-+|.-+..+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777766 7778888899999999999998877754
No 300
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.09 E-value=5.4e+02 Score=29.38 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=6.7
Q ss_pred cCCCCCCCCCcccC
Q 022306 56 GRNAAQSLPPKRKK 69 (299)
Q Consensus 56 ~~k~~qs~p~Kk~r 69 (299)
+...-+.-|+||-+
T Consensus 296 ~~~~~~aep~kklP 309 (1118)
T KOG1029|consen 296 GVGVVDAEPPKKLP 309 (1118)
T ss_pred cccccccCccccCC
Confidence 44444444555443
No 301
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=42.65 E-value=5e+02 Score=28.59 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 022306 181 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 211 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq~dl~~m~~eIsslm 211 (299)
||=.|-+..|+++.-|..+++-|.-+|.++-
T Consensus 486 klm~e~~~~~q~~k~L~~ek~~l~~~i~~l~ 516 (698)
T KOG0978|consen 486 KLMSERIKANQKHKLLREEKSKLEEQILTLK 516 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666665555443
No 302
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.36 E-value=6.7e+02 Score=29.99 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 022306 128 KSLESSKSQVNAVHLKLDELKRLAAEKDSLI 158 (299)
Q Consensus 128 kSae~~~~em~a~~akvDELr~~laeKe~li 158 (299)
+++.+.+.+-..+..+++.|...+.-.+.|+
T Consensus 1647 ~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1647 KTAGSAKEQALSAEQGLEILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444443
No 303
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.24 E-value=1.6e+02 Score=22.61 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 022306 130 LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 165 (299)
Q Consensus 130 ae~~~~em~a~~akvDELr~~laeKe~likStq~QL 165 (299)
+..+.+++..|+.+||.|...+.-=-.=|+.++.+-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777665543333333333333
No 304
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=42.20 E-value=1.3e+02 Score=31.59 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=29.1
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 022306 101 KEIEELVALREQVEDLQRKMFEKDELLKSLESS---KSQVNAVHLKLDELKR 149 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~---~~em~a~~akvDELr~ 149 (299)
.+++.|-+. ..++++++.+-++....++.... +.++.+++..|++++.
T Consensus 155 l~~~~L~T~-~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 155 LKGEDLKTV-ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK 205 (555)
T ss_pred hccCCCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 344444444 56677777776666666543332 5677777777777766
No 305
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.92 E-value=4.9e+02 Score=28.31 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST 161 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likSt 161 (299)
.+.|.-.|.|.|+-||..|.||++-|.. +++.|+.|.+.+.-+.+.|...|-++.+-
T Consensus 336 ~~ke~kdLkEkv~~lq~~l~eke~sl~d---lkehassLas~glk~ds~Lk~leIalEqk 392 (654)
T KOG4809|consen 336 FRKENKDLKEKVNALQAELTEKESSLID---LKEHASSLASAGLKRDSKLKSLEIALEQK 392 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 5667888999999999999999987665 57889999999888888888888887764
No 306
>PRK00846 hypothetical protein; Provisional
Probab=41.66 E-value=1.8e+02 Score=23.29 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=19.4
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCccc
Q 022306 195 KLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYY 236 (299)
Q Consensus 195 ~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~ 236 (299)
..|..++.|+.+|..|...|..+....-+... +--++|+|
T Consensus 38 ~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~~--dE~PPPHY 77 (77)
T PRK00846 38 DARLTGARNAELIRHLLEDLGKVRSTLFADPA--DEPPPPHY 77 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--CCCCcCCC
Confidence 34444555555555555556555533333332 33355654
No 307
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=41.51 E-value=3.6e+02 Score=26.64 Aligned_cols=52 Identities=27% Similarity=0.394 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022306 102 EIEELVALREQVEDLQRKMFEK----DELLKSLESSKSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EK----DelLkSae~~~~em~a~~akvDELr~~lae 153 (299)
..+.+..|..+|.+|+.+..+= .++-..+....++|..++.+.|++|...-+
T Consensus 156 ~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade 211 (294)
T COG1340 156 ENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADE 211 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666655431 122222233346666666666666665443
No 308
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=41.44 E-value=3.7e+02 Score=26.73 Aligned_cols=112 Identities=15% Similarity=0.227 Sum_probs=58.9
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 022306 95 RALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 174 (299)
Q Consensus 95 ~~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~Lad 174 (299)
.+..-..-|+.--.|.+.|++|+++|.|=.+=.+.+....++.......+. .+....+|+.||.-+ -.
T Consensus 70 La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~-~~~~~~ere~lV~qL-----------Ek 137 (319)
T PF09789_consen 70 LAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIG-ARHFPHEREDLVEQL-----------EK 137 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccc-ccccchHHHHHHHHH-----------HH
Confidence 444445578899999999999999987644444444443333322222221 223335566665422 12
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.+.-.+.||+++...-+=-+++-.|-+.+++-+.-|-.-|.-|-
T Consensus 138 ~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L 181 (319)
T PF09789_consen 138 LREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYIL 181 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233445555555554445555555555555555544444444
No 309
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=41.30 E-value=2.5e+02 Score=24.66 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQ 204 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~ 204 (299)
..++...+..+...+..+..++..|..++-+.......-+.....++...--+..+.++.++|..|...++
T Consensus 25 ~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 25 RADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 34444444445555555555555555555555443333344444445555555666666666666655443
No 310
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.19 E-value=1.3e+02 Score=28.45 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 179 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 179 LEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
...||-|+-.-...+..|+.++++++.+=..|
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577777777777777777777777775444
No 311
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=41.13 E-value=13 Score=30.06 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 191 RKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 191 ~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
.++..|..+++.+..+...|...|
T Consensus 107 ~~~~~l~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 107 AEAERLREEIEELKRQAEQFRAQF 130 (131)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555554444
No 312
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.00 E-value=3e+02 Score=30.28 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHhHHhhHH--------------------
Q 022306 110 REQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSL-IKSTQLQLSDA-------------------- 168 (299)
Q Consensus 110 reQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~l-ikStq~QLsda-------------------- 168 (299)
-+|+-.||.+.-=|.++..--.....++--++|+++||+--+-+-|-+ +.|++-+|..|
T Consensus 412 s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R 491 (852)
T KOG4787|consen 412 TTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVR 491 (852)
T ss_pred HHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHh
Confidence 344555555555555555555555688888888888888766665533 34555555433
Q ss_pred --HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 169 --KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 169 --ki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
.++-.| -..+-+||-|+..|++=.-+|+.++..++--|.-+-.-.+
T Consensus 492 ~~~~~~~d-~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~e 539 (852)
T KOG4787|consen 492 DGEIQYSD-ELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCE 539 (852)
T ss_pred hhhhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHH
Confidence 333221 1235568999999999999999998877655544433333
No 313
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.99 E-value=4.7e+02 Score=27.79 Aligned_cols=104 Identities=22% Similarity=0.317 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH----H
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK----S 182 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK----l 182 (299)
.+++++..+|++-+-=|+.++.-+-...+-+.-++.+|.++++++- -.-.|-.+.++-|..|..-|-+ +
T Consensus 265 sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~-------~ltqqwed~R~pll~kkl~Lr~~l~~~ 337 (521)
T KOG1937|consen 265 SQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQME-------ELTQQWEDTRQPLLQKKLQLREELKNL 337 (521)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 3444555555544444554444444333334444444444443333 2333444444444444333222 3
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 183 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 183 ewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
|-|... =++..+|+.||..+..||-+=-.+-.+|.
T Consensus 338 e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lr 372 (521)
T KOG1937|consen 338 ETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLR 372 (521)
T ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334433 57889999999999999984333333333
No 314
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=40.77 E-value=5.7e+02 Score=28.75 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=27.5
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022306 99 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVN 138 (299)
Q Consensus 99 ~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~ 138 (299)
.+|.-+-+-.|++..+-|++-|.-|++.=+...-.+..|+
T Consensus 490 ~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ 529 (961)
T KOG4673|consen 490 EEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQ 529 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4455556777888888888888888887776655553333
No 315
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=40.73 E-value=73 Score=29.64 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=18.5
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 022306 165 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESM 203 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m 203 (299)
|++..|..+..+|--+.+++-+..+..+++.||.||+-+
T Consensus 100 LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~ 138 (192)
T PF11180_consen 100 LADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIA 138 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444443
No 316
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=40.46 E-value=2.1e+02 Score=23.72 Aligned_cols=44 Identities=27% Similarity=0.407 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDEL 147 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDEL 147 (299)
.+|..|+++..-|+..+.-=..-+..++....++..+...|+.|
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l 49 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEEL 49 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555554443322222233333334444444444433
No 317
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.31 E-value=2.4e+02 Score=24.14 Aligned_cols=86 Identities=21% Similarity=0.239 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHH-----
Q 022306 113 VEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAM----- 187 (299)
Q Consensus 113 VeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~----- 187 (299)
|+-|+..|.-+|.=+- ++..++..+.+.=|++..++..=-.. ..++......+...+.-++.|+-.--
T Consensus 18 ve~L~s~lr~~E~E~~---~l~~el~~l~~~r~~l~~Eiv~l~~~----~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 18 VERLQSQLRRLEGELA---SLQEELARLEAERDELREEIVKLMEE----NEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655655555443 34566666777777777666542211 12223333333333333333322211
Q ss_pred --HhhhHHHHHHHHHhhhhh
Q 022306 188 --TVSRKAEKLQEEVESMQG 205 (299)
Q Consensus 188 --~sn~Kve~Lq~dl~~m~~ 205 (299)
..+-.|+.|+.||..|..
T Consensus 91 lGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 91 LGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred hcchHHHHHHHHHHHHHHHH
Confidence 245567777777776653
No 318
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.29 E-value=1.5e+02 Score=27.20 Aligned_cols=18 Identities=6% Similarity=0.150 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 135 ~em~a~~akvDELr~~la 152 (299)
.+|-+++.+|.+++.++-
T Consensus 162 ~d~l~ie~~L~~v~~eIe 179 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIE 179 (262)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 319
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=40.10 E-value=3.1e+02 Score=27.28 Aligned_cols=108 Identities=21% Similarity=0.254 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHHHHHHHHHh--------hhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 022306 102 EIEELVALREQVEDLQRKMF--------EKDE-------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~--------EKDe-------lLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLs 166 (299)
..-|+.+...+|+.|+.-.| +-|+ ++..=+.+.=+|.+++.++-||-.++.+=+-+=.-+--.|.
T Consensus 181 ~ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~ 260 (307)
T PF15112_consen 181 NIPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLE 260 (307)
T ss_pred cChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHH
Confidence 34578888889999885444 2222 11112333567778888888887777665432222222222
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 022306 167 DAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 213 (299)
Q Consensus 167 daki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~ 213 (299)
--+..|-.=....+.++=|+ .|+..|+..+...+.+|..+-..
T Consensus 261 ~~~~fL~~NkDL~~~l~~e~----qkL~~l~~k~~~~~~~v~~~~~~ 303 (307)
T PF15112_consen 261 VLKEFLRNNKDLRSNLQEEL----QKLDSLQTKHQKLESDVKELKSQ 303 (307)
T ss_pred HHHHHHHhcHHHHHHHHHHH----HHHHHHHHHhcchhhhhhHHHhh
Confidence 33333433334444566666 77888888888888887766543
No 320
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.55 E-value=60 Score=27.48 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022306 122 EKDELLKSLESSKSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 122 EKDelLkSae~~~~em~a~~akvDELr~~lae 153 (299)
+|.++...+.++..+|..++++|.+|+.++.+
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888888888888764
No 321
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=39.54 E-value=4.4e+02 Score=27.02 Aligned_cols=117 Identities=22% Similarity=0.236 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKS-LESSKSQVNAVHLKL-------DELKRLAAEKDSLIKSTQLQLSDAKIKLA 173 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkS-ae~~~~em~a~~akv-------DELr~~laeKe~likStq~QLsdaki~La 173 (299)
-++|+..|+.||+.|.-.+.+.+.-+.. .+++......+...+ +|++...-+-..+-.....+-+....++.
T Consensus 286 ~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~~ 365 (511)
T PF09787_consen 286 LQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKLK 365 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5677777777777777666666655544 444444444444333 44444455555566666666667777777
Q ss_pred hHHHHHHHHHHHHHHhh----------------hHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 174 DKQAALEKSQWEAMTVS----------------RKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 174 dKqAaLEKlewE~~~sn----------------~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+|..-+.+|--.++..- ...-.=|..|..+..|=.++..+|+++.
T Consensus 366 ~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~ 426 (511)
T PF09787_consen 366 EKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLE 426 (511)
T ss_pred HHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHH
Confidence 77777777766554433 1111224444466666667777777655
No 322
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.41 E-value=1.3e+02 Score=21.97 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 211 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm 211 (299)
|..-++.||-.+-.-......|..++..+..++..|.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444444444444444444444443
No 323
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=39.26 E-value=2.1e+02 Score=28.43 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 174 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 174 dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
++.+.+.++......-..+.++|++++..++.++.
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 324
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=38.87 E-value=2.1e+02 Score=23.20 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLI 158 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~li 158 (299)
..|+++++.|+..+. .+.....++..+...|+.|... ..++.+|
T Consensus 9 ~ql~~~i~~l~~~i~-------~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv 52 (126)
T TIGR00293 9 QILQQQVESLQAQIA-------ALRALIAELETAIETLEDLKGA-EGKETLV 52 (126)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcccc-CCCeEEE
Confidence 344444444444443 3444444444444555555443 3455555
No 325
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.73 E-value=2.2e+02 Score=23.34 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 022306 110 REQVEDLQRKMFEKDELLKSLESSK------SQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 165 (299)
Q Consensus 110 reQVeeLqkKL~EKDelLkSae~~~------~em~a~~akvDELr~~laeKe~likStq~QL 165 (299)
++.|+.|+.++..-|.=|..+|... .++..++-.|.+++..+..=+.-|+++..++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
No 326
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=38.55 E-value=2.7e+02 Score=29.51 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 180 EKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 180 EKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
+-||+|-.-.-+.++-|+..|.+++.+|.--...+.+
T Consensus 528 ~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~ 564 (583)
T KOG3809|consen 528 QELQNEQAATFGASEPLYNILANLQKEINDTKEEISK 564 (583)
T ss_pred HHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777888899999999999998877666553
No 327
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=38.40 E-value=5.5e+02 Score=27.83 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhh---hHHHHHHHHHhhhhhhHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVS---RKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn---~Kve~Lq~dl~~m~~eIs 208 (299)
.++..++.++.+|++.+.+=...+..++..+-++......++..|+.++-++.... ..--+|-+++-.+.+-|.
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence 44555666666666655555556666666666666666666666666666666555 444455555555555554
No 328
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=38.13 E-value=3.5e+02 Score=25.50 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HhHHhhHHHHhhhhHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKS---TQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likS---tq~QLsdaki~LadKqAaLEK 181 (299)
++...+.+++.++..+..... .++....++..+++.++..++++..-..|.+. .+.++.+++..+...++.++.
T Consensus 94 ~l~~a~a~l~~~~~~~~~~~~---~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~ 170 (346)
T PRK10476 94 DLALADAQIMTTQRSVDAERS---NAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQ 170 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 344444445544444333222 23345567777888888888887777777753 567888888888877777776
Q ss_pred HHHHHH
Q 022306 182 SQWEAM 187 (299)
Q Consensus 182 lewE~~ 187 (299)
++-+..
T Consensus 171 a~~~~~ 176 (346)
T PRK10476 171 ALLQAQ 176 (346)
T ss_pred HHHHHH
Confidence 655443
No 329
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=37.82 E-value=1.2e+02 Score=27.72 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHH---HHHHHHhhhhhhHHHHHHHHhhhhh
Q 022306 158 IKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAE---KLQEEVESMQGEMSSFMQIFEGLIK 219 (299)
Q Consensus 158 ikStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve---~Lq~dl~~m~~eIsslm~~fe~lt~ 219 (299)
.+-.-.|.-|....|.++++..++|. +++..-++++ +++.+|+..+.||-++...+..|..
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~-~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLL-ELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566667777777777777664 4444555666 6788888888888888888887763
No 330
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=37.71 E-value=1.4e+02 Score=31.02 Aligned_cols=23 Identities=4% Similarity=0.216 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH
Q 022306 133 SKSQVNAVHLKLDELKRLAAEKD 155 (299)
Q Consensus 133 ~~~em~a~~akvDELr~~laeKe 155 (299)
+..+|..+.+++.+|..++++-+
T Consensus 568 ~e~~i~~le~~~~~l~~~l~~~~ 590 (638)
T PRK10636 568 LEKEMEKLNAQLAQAEEKLGDSE 590 (638)
T ss_pred HHHHHHHHHHHHHHHHHHhcCch
Confidence 45566666666777766666543
No 331
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=37.44 E-value=3.6e+02 Score=25.50 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLE 180 (299)
-+..++++++++-+---|++-..+++++. ...|+++.+++.|-++-.-+=|+ -.-+---+|+=+.+-||
T Consensus 26 rl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adr-------K~eEVarkL~iiE~dLE 98 (205)
T KOG1003|consen 26 RLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADR-------KYEEVARKLVIIEGELE 98 (205)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHH
Confidence 34445555555555555566666666654 35677777766666554433332 22233345677777788
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 181 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
..+--+=...-++..|.+|+..|+...-+|+..-+++.
T Consensus 99 ~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~ 136 (205)
T KOG1003|consen 99 RAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLE 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Confidence 88888888888999999999999999888888766554
No 332
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=37.19 E-value=1.7e+02 Score=29.32 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 022306 131 ESSKSQVNAVHLKLDE 146 (299)
Q Consensus 131 e~~~~em~a~~akvDE 146 (299)
+.+..+.|.+.++|-.
T Consensus 45 ~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 45 EELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 333
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=36.89 E-value=3.7e+02 Score=25.36 Aligned_cols=17 Identities=0% Similarity=0.106 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022306 105 ELVALREQVEDLQRKMF 121 (299)
Q Consensus 105 El~~LreQVeeLqkKL~ 121 (299)
++..++.++...+.++.
T Consensus 87 ~l~~a~a~l~~a~a~l~ 103 (346)
T PRK10476 87 TVAQAQADLALADAQIM 103 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554443
No 334
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=36.89 E-value=1.1e+02 Score=27.16 Aligned_cols=49 Identities=31% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCCccccchh----hhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022306 86 SDSFSIFSSR----ALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSK 134 (299)
Q Consensus 86 ~en~s~~~s~----~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~ 134 (299)
++|+++..|. .......++=+.+|+.+=+.|+.+|..|=+=||-+=.-.
T Consensus 10 ~~sg~~l~sgs~~~~~~~~~~~e~~~~Lk~rk~~Lee~L~~kl~ELk~lClrE 62 (138)
T PF11819_consen 10 TSSGSILSSGSKDSESEEAAKKERLRALKKRKQALEERLAQKLEELKKLCLRE 62 (138)
T ss_pred cCCcceecCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655554 233344677788999999999999999988888776654
No 335
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=36.78 E-value=1.5e+02 Score=24.41 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=36.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 022306 120 MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 165 (299)
Q Consensus 120 L~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QL 165 (299)
|.-.+.+-.+++.+..++..++.+++.++..+.+...-|+.++.++
T Consensus 72 l~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 72 LHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677778888888888888888888888888888777776654
No 336
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=36.50 E-value=3.6e+02 Score=25.18 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH---HhHHhhHHHHhhhhHHHHHHHHHHHHHHh-----hhHHHHHHHHHhhhhh
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKS---TQLQLSDAKIKLADKQAALEKSQWEAMTV-----SRKAEKLQEEVESMQG 205 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likS---tq~QLsdaki~LadKqAaLEKlewE~~~s-----n~Kve~Lq~dl~~m~~ 205 (299)
..++..+++.++-.++.+.....|.+. .+.++.+++..+...++.++.++-.+..- ......++.++...+.
T Consensus 113 ~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (331)
T PRK03598 113 RAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQA 192 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 344444455555555444444444432 45677777777777777766666554432 2233344445555555
Q ss_pred hHHHHHHHHh
Q 022306 206 EMSSFMQIFE 215 (299)
Q Consensus 206 eIsslm~~fe 215 (299)
++......++
T Consensus 193 ~l~~a~~~l~ 202 (331)
T PRK03598 193 ALAQAELNLQ 202 (331)
T ss_pred HHHHHHHHHh
Confidence 5554444444
No 337
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.44 E-value=74 Score=26.59 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022306 122 EKDELLKSLESSKSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 122 EKDelLkSae~~~~em~a~~akvDELr~~lae 153 (299)
+|-++...+..+..+|..++++|.+|+.++.+
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~ 33 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQE 33 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888888887753
No 338
>PRK04325 hypothetical protein; Provisional
Probab=36.44 E-value=1.7e+02 Score=22.80 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 193 AEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 193 ve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
|-..|.+++.|+.++..|...+..+.
T Consensus 32 v~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 32 VARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444443
No 339
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=36.33 E-value=4.7e+02 Score=26.99 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQ 162 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq 162 (299)
..++....+++..|++++++.+.++....
T Consensus 75 ~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 75 QPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666555443
No 340
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=35.87 E-value=2.4e+02 Score=32.71 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
-..+-+...+..++..++..+.-.+.+..+|.....+|.+..+.++++..+.+.-..+...++++++.-+..+..--.+.
T Consensus 920 ~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li 999 (1395)
T KOG3595|consen 920 DKYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELI 999 (1395)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888889999999999999999999999999999999999999999999999999988888887665555
Q ss_pred hhhh
Q 022306 215 EGLI 218 (299)
Q Consensus 215 e~lt 218 (299)
..++
T Consensus 1000 ~~Ls 1003 (1395)
T KOG3595|consen 1000 QGLS 1003 (1395)
T ss_pred Hhcc
Confidence 5544
No 341
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=35.71 E-value=3.5e+02 Score=24.82 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=47.0
Q ss_pred hhcHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHhHHhhHHHHh
Q 022306 100 EKEIEELVA-LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHL-------KLDELKRLAAEKDSLIKSTQLQLSDAKIK 171 (299)
Q Consensus 100 ~k~~eEl~~-LreQVeeLqkKL~EKDelLkSae~~~~em~a~~a-------kvDELr~~laeKe~likStq~QLsdaki~ 171 (299)
..++++++. --.++.+|+..|+++...+..+..-...|..+.. .|..|+.++ +..-.-+...+++++..
T Consensus 35 ~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~---~~~~~e~~~~l~~~~~q 111 (206)
T PF14988_consen 35 QRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEEL---EKMRAEHAEKLQEAESQ 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 345666654 4567999999999999888777766544444332 233333322 22223344556666666
Q ss_pred hhhHHHHHHH
Q 022306 172 LADKQAALEK 181 (299)
Q Consensus 172 LadKqAaLEK 181 (299)
+-.-.+.||+
T Consensus 112 fl~EK~~LEk 121 (206)
T PF14988_consen 112 FLQEKARLEK 121 (206)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 342
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=35.64 E-value=3.2e+02 Score=24.37 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDE 146 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDE 146 (299)
-+-||..-.++|.-||..+.-=.-+ +-+.++++-++.+++-|
T Consensus 13 a~aeL~~a~~~I~~~q~r~a~a~~~---~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 13 ARAELDQADEDIATLQERQASAEQA---LNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence 4568888888888888766433222 33344555555555544
No 343
>PRK02119 hypothetical protein; Provisional
Probab=35.58 E-value=1.7e+02 Score=22.76 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHhhH
Q 022306 142 LKLDELKRLAAEKDSLIKSTQLQLSD 167 (299)
Q Consensus 142 akvDELr~~laeKe~likStq~QLsd 167 (299)
+.|++|--.+|-=|-.|..++..+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~ 34 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIE 34 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 344
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=35.55 E-value=8.1e+02 Score=29.00 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLES 132 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~ 132 (299)
.+++..|+++|..|+-.+.++..-|+-++.
T Consensus 622 ~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 622 SEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 345666666666666666555544444443
No 345
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=35.53 E-value=3.3e+02 Score=25.76 Aligned_cols=36 Identities=28% Similarity=0.387 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 180 EKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 180 EKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
|++|-.++.--+..+.++.+-+.+=.|=+.|+.+++
T Consensus 175 e~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 175 EKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 333333333333444444444444444444444443
No 346
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=35.11 E-value=1.8e+02 Score=28.69 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~lae 153 (299)
=+..|+++++.|++++.+=++.|..-....+++..+..+++-+.+++.+
T Consensus 243 ~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444433333322223333344444444444443333
No 347
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=34.93 E-value=3.4e+02 Score=24.36 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=43.1
Q ss_pred HHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 149 RLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 149 ~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
+++.++..=+......|....-.|..+...|++-+.++-......+.....|.....++..+..
T Consensus 71 ~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~ 134 (201)
T PF12072_consen 71 RELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIE 134 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555556666666777777777777777777777777777777777777775443
No 348
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.36 E-value=2.4e+02 Score=24.91 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 176 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 176 qAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
-.|+|-|...+-.=++-..+|++.+..+-..+..+....+.+.
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555443
No 349
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=34.20 E-value=4e+02 Score=24.97 Aligned_cols=82 Identities=24% Similarity=0.309 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHh----hHHHHHHHhHHhh----
Q 022306 106 LVALREQVEDLQRKMFEKDELLK----SLESS-------KSQVNAVHLKLDELKRLAAE----KDSLIKSTQLQLS---- 166 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLk----Sae~~-------~~em~a~~akvDELr~~lae----Ke~likStq~QLs---- 166 (299)
+..|.+.|+.|.-.+-++=+.|. ..-.+ +.++..+..|+|.+-+.|-- -|-|-..+|-|+.
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQIKTQGE 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhhhHH
Confidence 34567788888888887766666 32222 57788888899988877652 2222222222221
Q ss_pred HHHHhhhhHHH-HHHHHHHHHH
Q 022306 167 DAKIKLADKQA-ALEKSQWEAM 187 (299)
Q Consensus 167 daki~LadKqA-aLEKlewE~~ 187 (299)
.-+..|-+||- .++|++-+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ 182 (189)
T TIGR02132 161 QLQAQLLEKQEALAAKLKAEAK 182 (189)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH
Confidence 22334555553 3466666654
No 350
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.19 E-value=1.3e+02 Score=24.59 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 178 ALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 178 aLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
|.+-++.-+..=.+..++|+.++..++.+|..+...++.
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 88 AIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445566666666666666666555543
No 351
>PRK14143 heat shock protein GrpE; Provisional
Probab=34.16 E-value=2.1e+02 Score=27.01 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhHHhh
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA-AEKDSLIKSTQLQLS 166 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~l-aeKe~likStq~QLs 166 (299)
..+++..|.++++.|++++.+ +.++..-++|.++-+|+-. .|++.+++.....+-
T Consensus 65 ~~~~~~~l~~el~~l~~e~~e----------lkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~ 120 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEE----------LNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTL 120 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677788888888777765 2344455566666666655 456666666555443
No 352
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=34.11 E-value=3.7e+02 Score=25.41 Aligned_cols=38 Identities=8% Similarity=0.375 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHH---HHHHHHhhhh
Q 022306 181 KSQWEAMTVSRKAEKLQEEVESMQGEMS---SFMQIFEGLI 218 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq~dl~~m~~eIs---slm~~fe~lt 218 (299)
+-+-++..-|+|+-+|+.-|..+..+|. +.-.+|+.=+
T Consensus 126 r~~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 126 REEEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQRS 166 (205)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5678999999999999999999999998 6666666433
No 353
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=33.90 E-value=5.1e+02 Score=30.55 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=13.0
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHH
Q 022306 161 TQLQLSDAKIKLADKQAALEKSQWEAMT 188 (299)
Q Consensus 161 tq~QLsdaki~LadKqAaLEKlewE~~~ 188 (299)
.|.+..+...++....+-+.+|+.++-.
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~ 519 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQ 519 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 354
>PRK14153 heat shock protein GrpE; Provisional
Probab=33.86 E-value=1.9e+02 Score=26.58 Aligned_cols=52 Identities=17% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhHHhh
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA-EKDSLIKSTQLQLS 166 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~la-eKe~likStq~QLs 166 (299)
+...+..+|+.|+.++.+ +++...-++|.++-+|+-.. +++.+.++....+-
T Consensus 34 ~~~~~~~ei~~l~~e~~e----------lkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~ 86 (194)
T PRK14153 34 EDSTADSETEKCREEIES----------LKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVL 86 (194)
T ss_pred hcccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555432 34445556666666666554 66666666555444
No 355
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=33.27 E-value=3.9e+02 Score=24.60 Aligned_cols=55 Identities=24% Similarity=0.209 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HhHHhhHHHHhhhhHHHHHHHHHH
Q 022306 130 LESSKSQVNAVHLKLDELKRLAAEKDSLIKS---TQLQLSDAKIKLADKQAALEKSQW 184 (299)
Q Consensus 130 ae~~~~em~a~~akvDELr~~laeKe~likS---tq~QLsdaki~LadKqAaLEKlew 184 (299)
+.....++..+++.++..+..+..-..|.+. .+.++.+++..+..-++.|+.++-
T Consensus 110 i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~~a~~~l~~~~~ 167 (334)
T TIGR00998 110 VESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKALLSAKAALNAAIQ 167 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666665555542 455666666666666666665444
No 356
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=33.16 E-value=1.6e+02 Score=25.72 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022306 134 KSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 134 ~~em~a~~akvDELr~~la 152 (299)
..+...+++++++|++++.
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELN 57 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555543
No 357
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=33.05 E-value=5.7e+02 Score=26.47 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhHHHHHHHhHHhhHHH----HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 022306 144 LDELKRLAAEKDSLIKSTQLQLSDAK----IKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 211 (299)
Q Consensus 144 vDELr~~laeKe~likStq~QLsdak----i~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm 211 (299)
|-.++..++-.-.=+.++..+..+.+ +.+.+++-.+.+|+-++-.-.+|.+.|+..=+.+..+|+++.
T Consensus 173 l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33334444433334444444444433 345677777888889999999999999999999999999887
No 358
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=33.02 E-value=4.8e+02 Score=25.53 Aligned_cols=18 Identities=39% Similarity=0.379 Sum_probs=10.9
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 022306 117 QRKMFEKDELLKSLESSK 134 (299)
Q Consensus 117 qkKL~EKDelLkSae~~~ 134 (299)
.-+|.+.+..|.-+++..
T Consensus 148 ~~dl~e~~~~l~DLesa~ 165 (269)
T PF05278_consen 148 ESDLKEMIATLKDLESAK 165 (269)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 345666666666666554
No 359
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.66 E-value=4.8e+02 Score=25.49 Aligned_cols=102 Identities=19% Similarity=0.304 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHH-Hh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH---------hHHhhHHHHhhh
Q 022306 105 ELVALREQVEDLQRK-MF-EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST---------QLQLSDAKIKLA 173 (299)
Q Consensus 105 El~~LreQVeeLqkK-L~-EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likSt---------q~QLsdaki~La 173 (299)
=|-.|-.=|.+||.. +. =.++=|+.+-....+|..++=+|+=||..|-| ++... -.+-....-+|.
T Consensus 127 yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~E---i~Ea~e~~~~~~~~e~eke~~~r~l~ 203 (269)
T PF05278_consen 127 YLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEE---ILEAKEIYDQHETREEEKEEKDRKLE 203 (269)
T ss_pred HHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777642 11 12334666667777777777777777765544 22221 111222223333
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 022306 174 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 209 (299)
Q Consensus 174 dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIss 209 (299)
.+..-||.++-|+....+++..++..+..+.+..+.
T Consensus 204 ~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~ 239 (269)
T PF05278_consen 204 LKKEELEELEEELKQKEKEVKEIKERITEMKGRLGE 239 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555444443
No 360
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=32.61 E-value=7.5e+02 Score=27.71 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHhh
Q 022306 246 LDDVEMQRMEEAREAYITAVAMAK 269 (299)
Q Consensus 246 ~~~~e~~kmE~aR~aY~aAvaaAK 269 (299)
++..+++.+++.-..|-.++..+.
T Consensus 774 ~~~~~~~~l~~~i~~~~~~~~~~~ 797 (1047)
T PRK10246 774 LDEETLTQLEQLKQNLENQRQQAQ 797 (1047)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777766554443
No 361
>PRK14161 heat shock protein GrpE; Provisional
Probab=32.58 E-value=2.2e+02 Score=25.74 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFE-KDELLKSLESS 133 (299)
Q Consensus 105 El~~LreQVeeLqkKL~E-KDelLkSae~~ 133 (299)
.+..+++++++|+.++.+ ||.+|+..-.+
T Consensus 20 ~~~~~~~ei~~l~~e~~elkd~~lR~~Aef 49 (178)
T PRK14161 20 IVETANPEITALKAEIEELKDKLIRTTAEI 49 (178)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544 44445443333
No 362
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=32.54 E-value=4.7e+02 Score=25.35 Aligned_cols=11 Identities=18% Similarity=0.211 Sum_probs=4.9
Q ss_pred hhhHHHHHHHH
Q 022306 121 FEKDELLKSLE 131 (299)
Q Consensus 121 ~EKDelLkSae 131 (299)
+.|+.-|+...
T Consensus 140 L~kE~~lr~~R 150 (267)
T PF10234_consen 140 LGKEVELREER 150 (267)
T ss_pred HhchHhHHHHH
Confidence 34444444433
No 363
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.52 E-value=5e+02 Score=30.18 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 131 ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 131 e~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
|-....+..++..+|.+++...-=..-|.++ .+|.. | + +...++++-|+...++.+..|-.++..++.+|.++
T Consensus 810 e~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k----~-k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~ 882 (1141)
T KOG0018|consen 810 ERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-K----N-KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSI 882 (1141)
T ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-H----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3334455555566666665433333334444 33333 1 1 67788999999999999999999999998888876
Q ss_pred HHHHh
Q 022306 211 MQIFE 215 (299)
Q Consensus 211 m~~fe 215 (299)
-..++
T Consensus 883 es~ie 887 (1141)
T KOG0018|consen 883 ESKIE 887 (1141)
T ss_pred hhHHH
Confidence 66555
No 364
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.38 E-value=5.6e+02 Score=26.18 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=19.5
Q ss_pred hhhhhhhcc--CCCcccccceeeecCCCh
Q 022306 18 SPSLYDRKA--SSSFTRRGSMIYTKTPSR 44 (299)
Q Consensus 18 ~eSlmdrk~--~~sftRr~SmiYT~aP~r 44 (299)
++-+|-.-+ .|.|+|+.+=+++|-|.-
T Consensus 128 iq~l~a~f~~~pP~ys~~~~~~p~p~p~~ 156 (365)
T KOG2391|consen 128 IQELIAAFSEDPPVYSRSLPSPPPPYPQT 156 (365)
T ss_pred HHHHHHHhcCCCccccCCCCCCCCCCCcc
Confidence 344554444 499999999888888873
No 365
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.38 E-value=44 Score=34.80 Aligned_cols=15 Identities=20% Similarity=0.607 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKM 120 (299)
Q Consensus 105 El~~LreQVeeLqkKL 120 (299)
|+..|| |||+|+++|
T Consensus 26 ~~~~~q-kie~L~kql 40 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQL 40 (489)
T ss_pred hhHHHH-HHHHHHHHH
Confidence 333344 555555543
No 366
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=32.31 E-value=2.5e+02 Score=30.53 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH-HhhhhHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK-IKLADKQAALEK 181 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdak-i~LadKqAaLEK 181 (299)
++.+..|..++++|.++..|+ +++...++.+++.|-..++...-+......-.+|-= ++|.+.++-|-.
T Consensus 102 ke~l~~l~~~le~lr~qk~eR----------~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~ 171 (660)
T KOG4302|consen 102 KEQLESLKPYLEGLRKQKDER----------RAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNE 171 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHH
Confidence 567888888888888776554 678889999999999999998322222222222221 778888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
||-|---+=.||..+ .++|.+++.+|.
T Consensus 172 L~~ek~~Rlekv~~~-------~~~I~~l~~~Lg 198 (660)
T KOG4302|consen 172 LQKEKSDRLEKVLEL-------KEEIKSLCSVLG 198 (660)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHhC
Confidence 887765555555444 455555555554
No 367
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=32.26 E-value=84 Score=28.22 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=29.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 022306 165 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQE 198 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~ 198 (299)
+-+.-+.||..+.++..|.-|+.+++.+|+-|+.
T Consensus 138 ~l~~li~lA~~e~~~~~L~~ei~kT~RRVNALE~ 171 (204)
T PRK00373 138 LLEKILELAEVEKTIQLLADEIEKTKRRVNALEY 171 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455688999999999999999999999998864
No 368
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.23 E-value=68 Score=24.89 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 022306 251 MQRMEEAREAYITAVAMAKEKQDEESMATAARA 283 (299)
Q Consensus 251 ~~kmE~aR~aY~aAvaaAKenp~eEsl~~aAea 283 (299)
....|.|..+.-+||..|+++-|..+|+.|-..
T Consensus 54 ~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 54 FGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred hCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 455689999999999999999999999887543
No 369
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=32.16 E-value=55 Score=24.95 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=7.1
Q ss_pred HhhhhhhHHHHHHHHhhhh
Q 022306 200 VESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 200 l~~m~~eIsslm~~fe~lt 218 (299)
+++++.|++.+..-+++|-
T Consensus 16 i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 370
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=32.03 E-value=2.6e+02 Score=22.15 Aligned_cols=96 Identities=16% Similarity=0.248 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 107 VALREQVEDLQRKMFEK---DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EK---DelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
..+|+-.+.....|.-+ ...+..+-.+-.+...+..++|+|+.+-..--..|.. ++..= ...+.|-
T Consensus 5 k~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~-------~~~~~----~~~~~l~ 73 (108)
T PF02403_consen 5 KLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGK-------LKKAG----EDAEELK 73 (108)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCHTT----CCTHHHH
T ss_pred HHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HhhCc----ccHHHHH
Confidence 34555555555555544 2455555555566666666666666553332222211 11100 2233444
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGEMSSFMQI 213 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~eIsslm~~ 213 (299)
-++..-..++..++.++..++.++-.++..
T Consensus 74 ~e~~~lk~~i~~le~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKELEEELNELLLS 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455566666666666666666666655543
No 371
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=32.03 E-value=5.8e+02 Score=26.23 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhHHHHHHHhH
Q 022306 144 LDELKRLAAEKDSLIKSTQL 163 (299)
Q Consensus 144 vDELr~~laeKe~likStq~ 163 (299)
|++-.+.+...+.+...++.
T Consensus 214 L~~e~~~L~n~e~i~~~~~~ 233 (563)
T TIGR00634 214 LEAEQQRLSNLEKLRELSQN 233 (563)
T ss_pred HHHHHHHHhCHHHHHHHHHH
Confidence 44444455555555544443
No 372
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=31.98 E-value=7.6e+02 Score=27.59 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 022306 112 QVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 167 (299)
Q Consensus 112 QVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsd 167 (299)
|+++|++-|.+|..+|..-.++..=...++++=.+|...|--++.=|+-+.-||+.
T Consensus 406 eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~ 461 (786)
T PF05483_consen 406 ELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTT 461 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 57888888888888887777765555555555555555544444444444444433
No 373
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=31.90 E-value=90 Score=28.21 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=30.7
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 022306 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQE 198 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~ 198 (299)
++-+.-+.||..+.++..|..|+.+++.+|+-|+.
T Consensus 137 ~~l~~li~lA~~e~~~~~L~~eI~~T~RRVNALE~ 171 (209)
T TIGR00309 137 EAVELIVELAEIETTIRLLAEEIEITKRRVNALEH 171 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999998874
No 374
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.86 E-value=1.6e+02 Score=26.00 Aligned_cols=36 Identities=31% Similarity=0.501 Sum_probs=23.2
Q ss_pred HHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 117 QRKMFE-KDELLKSLESSKSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 117 qkKL~E-KDelLkSae~~~~em~a~~akvDELr~~la 152 (299)
+.+|-+ |+.+++.++-+.+++..+.+.+|+|+..|=
T Consensus 83 ~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 83 QDQLEEKKETLEKEIEELESELESISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334433 344566777777777777777777777653
No 375
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=31.53 E-value=3.8e+02 Score=24.00 Aligned_cols=114 Identities=12% Similarity=0.152 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHH--------HHHhhHHHHHHHhHHhhHHHHhh
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKR--------LAAEKDSLIKSTQLQLSDAKIKL 172 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~--------~laeKe~likStq~QLsdaki~L 172 (299)
.-..|++.+..+++-|.+=+-.|.....- -.+++.....||.|-. .+.-=+.|.-.+..++..+...+
T Consensus 16 ~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~ 95 (158)
T PF09486_consen 16 RERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAEL 95 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666655555443333 4666777777776654 34445666777778888888888
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 173 ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 173 adKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+-.+.+|+..+-++...+.++..++..++-..--|..+....+--.
T Consensus 96 a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~ 141 (158)
T PF09486_consen 96 AALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAA 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999999999999999999999999999888877554
No 376
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.42 E-value=4.4e+02 Score=24.66 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=10.1
Q ss_pred HHHhHHhhHHHHhhhhHHHHHH
Q 022306 159 KSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 159 kStq~QLsdaki~LadKqAaLE 180 (299)
..+|.|++.-.--+..+.+.|.
T Consensus 133 ~~Lq~Ql~~~e~l~~~~da~l~ 154 (193)
T PF14662_consen 133 ATLQRQLCEFESLICQRDAILS 154 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455444444444444443
No 377
>PHA01750 hypothetical protein
Probab=31.38 E-value=1.3e+02 Score=24.24 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=15.0
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHHHH
Q 022306 95 RALVSEKEIEELVALREQVEDLQRKM 120 (299)
Q Consensus 95 ~~~~~~k~~eEl~~LreQVeeLqkKL 120 (299)
++...+-...||-.|+-||++++.+.
T Consensus 33 kdAvkeIV~~ELdNL~~ei~~~kikq 58 (75)
T PHA01750 33 KDAVKEIVNSELDNLKTEIEELKIKQ 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444455566666666666666443
No 378
>PRK14163 heat shock protein GrpE; Provisional
Probab=31.33 E-value=4.5e+02 Score=24.72 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFE-KDELLKSLESSK 134 (299)
Q Consensus 105 El~~LreQVeeLqkKL~E-KDelLkSae~~~ 134 (299)
+...|.++++.|+.++.+ ||.+|+..-.+.
T Consensus 41 ~~~~l~~~l~~l~~e~~el~d~~lR~~AEfe 71 (214)
T PRK14163 41 ATAGLTAQLDQVRTALGERTADLQRLQAEYQ 71 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888776 455555444333
No 379
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=31.33 E-value=4.3e+02 Score=24.46 Aligned_cols=55 Identities=18% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HhHHhhHHHHhhhhHHHHHHHHHH
Q 022306 130 LESSKSQVNAVHLKLDELKRLAAEKDSLIKS---TQLQLSDAKIKLADKQAALEKSQW 184 (299)
Q Consensus 130 ae~~~~em~a~~akvDELr~~laeKe~likS---tq~QLsdaki~LadKqAaLEKlew 184 (299)
+.....++..+++.++..++++..-..|.+. .+.++-+++..+...++.|+.++-
T Consensus 99 ~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~ 156 (327)
T TIGR02971 99 VAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALA 156 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777777777666666543 345566666666555555555443
No 380
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=31.15 E-value=3.4e+02 Score=23.21 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESS---KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~---~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK 181 (299)
|+.+|+.++.-|.. +||.+-..+=.+ ..++.+..+.++.|+.++.+ ++.....+=.+||+|---+|.
T Consensus 31 E~~~l~~el~~l~~---~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~-------l~~ry~t~LellGEK~E~veE 100 (120)
T PF12325_consen 31 ELASLQEELARLEA---ERDELREEIVKLMEENEELRALKKEVEELEQELEE-------LQQRYQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcchHHHHHH
Confidence 67777777777654 344443332222 23334444445555544433 344455555667777766666
Q ss_pred HHHHH
Q 022306 182 SQWEA 186 (299)
Q Consensus 182 lewE~ 186 (299)
|+--+
T Consensus 101 L~~Dv 105 (120)
T PF12325_consen 101 LRADV 105 (120)
T ss_pred HHHHH
Confidence 66543
No 381
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=31.01 E-value=2.2e+02 Score=25.41 Aligned_cols=84 Identities=24% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhHHhhHHHHhhhh-------HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcC
Q 022306 149 RLAAEKDSLIKSTQLQLSDAKIKLAD-------KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 221 (299)
Q Consensus 149 ~~laeKe~likStq~QLsdaki~Lad-------KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~ 221 (299)
++..+-..+|.+++..|++.+..|+- |-..+|+|. .+|.+|.++| ++++..|..- .+--++.
T Consensus 54 r~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~-------d~v~eLkeel---~~el~~l~~~-~~~~e~~ 122 (146)
T PF05852_consen 54 REECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLT-------DRVEELKEEL---EFELERLQSA-GGSQESL 122 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------HHHHHHHHHH---HHHHHHHhcc-CCCCCCC
Q ss_pred CCCCCCCCCCCCcccccccCCC
Q 022306 222 STVNADDDYDIKPYYSDYLSDI 243 (299)
Q Consensus 222 S~~~~~~d~d~~p~~~d~l~~~ 243 (299)
+....+.+.++.-|+++.||..
T Consensus 123 ~~~~~~~~d~I~~WRLe~lP~v 144 (146)
T PF05852_consen 123 SGEEEEPDDTIMQWRLEALPRV 144 (146)
T ss_pred CCCCCCcccHHHHHHhhcCCCC
No 382
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=30.97 E-value=4.3e+02 Score=24.42 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022306 111 EQVEDLQRKMFEKDELLKSLESSKSQVNAV 140 (299)
Q Consensus 111 eQVeeLqkKL~EKDelLkSae~~~~em~a~ 140 (299)
.+++.++..+..-...|..++..-+++..|
T Consensus 97 ~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L 126 (327)
T TIGR02971 97 KDVAAQQATLNRLEAELETAQREVDRYRSL 126 (327)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333
No 383
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.96 E-value=6.5e+02 Score=26.50 Aligned_cols=89 Identities=19% Similarity=0.368 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK 181 (299)
.++-|++|=.++.++.++|.+ + ..+=..+.++-+.|++.-..=|.-|.+ .|...+.
T Consensus 57 P~DTlrTlva~~k~~r~~~~~---l-------~~~N~~l~~eN~~L~~r~~~id~~i~~---av~~~~~----------- 112 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAK---L-------ISENEALKAENERLQKREQSIDQQIQQ---AVQSETQ----------- 112 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHhhhH-----------
Confidence 456788888888888877642 2 233333444444444433332322221 1222221
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhc
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 220 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n 220 (299)
|+ .+..+.|+.++..++..|..|+..|+++..+
T Consensus 113 ---~~---~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~~ 145 (472)
T TIGR03752 113 ---EL---TKEIEQLKSERQQLQGLIDQLQRRLAGVLTG 145 (472)
T ss_pred ---HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 11 1244566777778888888888888877643
No 384
>PRK15396 murein lipoprotein; Provisional
Probab=30.78 E-value=2.7e+02 Score=22.38 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022306 134 KSQVNAVHLKLDELKRL 150 (299)
Q Consensus 134 ~~em~a~~akvDELr~~ 150 (299)
.+++..|++++|.+...
T Consensus 31 ssqV~~L~~kvdql~~d 47 (78)
T PRK15396 31 SSDVQTLNAKVDQLSND 47 (78)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 385
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=30.67 E-value=7.4e+02 Score=27.04 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 178 ALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 178 aLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
.++++--+......+..+++..+.........+...++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 427 (908)
T COG0419 390 AIQELKEELAELSAALEEIQEELEELEKELEELERELE 427 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444555555555555554444444443
No 386
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=30.54 E-value=1.4e+02 Score=25.96 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=21.9
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 022306 162 QLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESM 203 (299)
Q Consensus 162 q~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m 203 (299)
..++.+.+-.+...++.+++||+|+-.....+..|+.+|+..
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555443
No 387
>PLN02678 seryl-tRNA synthetase
Probab=30.30 E-value=2.5e+02 Score=28.75 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022306 127 LKSLESSKSQVNAVHLKLDEL 147 (299)
Q Consensus 127 LkSae~~~~em~a~~akvDEL 147 (299)
+..++.+..+.|.+-++|-.+
T Consensus 46 ~~~~e~lr~erN~~sk~I~~~ 66 (448)
T PLN02678 46 QFELDSLRKEFNKLNKEVAKL 66 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555443
No 388
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=30.24 E-value=4.9e+02 Score=28.11 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=12.0
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRK 119 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkK 119 (299)
-.+|...||..+.-|+..
T Consensus 171 ~~een~~lr~k~~llk~E 188 (596)
T KOG4360|consen 171 LEEENTQLRSKAMLLKTE 188 (596)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 456777777777766654
No 389
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=30.19 E-value=5.3e+02 Score=25.21 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 174 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 174 dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
++-+..+.+..+...-.++..++.+++..++-+|+.|+.+...|
T Consensus 206 e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~~sv~~al 249 (264)
T PF07246_consen 206 ELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDFTSVPQAL 249 (264)
T ss_pred HHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHH
Confidence 33333444445555556788888888888888888776554444
No 390
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=30.15 E-value=3.9e+02 Score=23.69 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=7.7
Q ss_pred HhhhHHHHHHHHHhhhhhhH
Q 022306 188 TVSRKAEKLQEEVESMQGEM 207 (299)
Q Consensus 188 ~sn~Kve~Lq~dl~~m~~eI 207 (299)
..+-.+..|+.+++..+.+|
T Consensus 160 ~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 160 GENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HTT--HHHHHHHHHHHTGGG
T ss_pred cccCCHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 391
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=30.09 E-value=4.3e+02 Score=24.08 Aligned_cols=15 Identities=47% Similarity=0.616 Sum_probs=5.9
Q ss_pred HHHHHHHHhhhhhhH
Q 022306 193 AEKLQEEVESMQGEM 207 (299)
Q Consensus 193 ve~Lq~dl~~m~~eI 207 (299)
++.|.+++.+++.++
T Consensus 168 ~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 168 AEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 392
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.06 E-value=7e+02 Score=26.58 Aligned_cols=63 Identities=13% Similarity=0.247 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 022306 103 IEELVALREQVEDLQRKMFE-------------KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 165 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~E-------------KDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QL 165 (299)
.++|..|+.+++..+.+|.. -..++..+..+..++..+..+..+|...+.++-=.+++++.|+
T Consensus 273 ~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~ 348 (726)
T PRK09841 273 QRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKR 348 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHH
Confidence 35555666665555555432 1223334444444444444444555444444444455555443
No 393
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=7e+02 Score=26.56 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=27.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 171 KLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 171 ~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
-|+|=.|-|+||+--+..+++++..|-...+..+.=..
T Consensus 287 ~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll 324 (521)
T KOG1937|consen 287 ALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLL 324 (521)
T ss_pred hcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 36677788888888888888888877777666655433
No 394
>PRK14140 heat shock protein GrpE; Provisional
Probab=29.98 E-value=2.9e+02 Score=25.37 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFE-KDELLKSLESSK 134 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~E-KDelLkSae~~~ 134 (299)
.-++|-.|..+|++|++++.+ ||.+|+..-.+.
T Consensus 35 ~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~e 68 (191)
T PRK14140 35 EAELLDEEQAKIAELEAKLDELEERYLRLQADFE 68 (191)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777777777655 455555444433
No 395
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.79 E-value=2.6e+02 Score=27.86 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=19.1
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 022306 161 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESM 203 (299)
Q Consensus 161 tq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m 203 (299)
.|.+|++++.....-+..+..+-.++..-+...+..+.+++.-
T Consensus 278 ~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 278 AQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444444433
No 396
>PRK10869 recombination and repair protein; Provisional
Probab=29.70 E-value=6.6e+02 Score=26.13 Aligned_cols=16 Identities=19% Similarity=-0.035 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhhh
Q 022306 274 EESMATAARARLHLQS 289 (299)
Q Consensus 274 eEsl~~aAeaR~~Lq~ 289 (299)
++-|....+++.+|+.
T Consensus 320 ~~~~~~~~~l~~eL~~ 335 (553)
T PRK10869 320 EELPQHHQQLLEEQQQ 335 (553)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555544
No 397
>PRK01203 prefoldin subunit alpha; Provisional
Probab=29.51 E-value=1.5e+02 Score=25.79 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=37.8
Q ss_pred CCCccccchhhhhhhhcHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 022306 86 SDSFSIFSSRALVSEKEIE-ELVALREQVEDLQRKMFEKDELLKSLESSKSQVN 138 (299)
Q Consensus 86 ~en~s~~~s~~~~~~k~~e-El~~LreQVeeLqkKL~EKDelLkSae~~~~em~ 138 (299)
.+++.+.++-...-+|+.+ =+-.|.+++++|+.-+.+|-..++++..-.+++.
T Consensus 68 ~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 68 DKDLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred CCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554455555444 4567999999999999999999998887666655
No 398
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.40 E-value=9.1e+02 Score=27.70 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=51.2
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHH
Q 022306 95 RALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKI 170 (299)
Q Consensus 95 ~~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~~laeKe~likStq~QLsdaki 170 (299)
|.-.+.|+||-.-+=|-+-.+|+++|----++=+.-|.- +.++.+....++-.|++-=||-+ ++-++.|--.-+-
T Consensus 352 reE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar-~qem~~Qk~reqe 430 (1118)
T KOG1029|consen 352 REEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERAR-RQEMLNQKNREQE 430 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHH
Confidence 344566677777676777777877775443333322221 34555555555555554444332 2222223222222
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 022306 171 KLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQG 205 (299)
Q Consensus 171 ~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~ 205 (299)
...-..|-.-.|+-|+.+-|.|.-.|.+.|-.++|
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~ 465 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRV 465 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhee
Confidence 22223333334444444444444444444433333
No 399
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.37 E-value=6.8e+02 Score=26.22 Aligned_cols=62 Identities=13% Similarity=0.129 Sum_probs=29.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 115 DLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 115 eLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
.+..++..-.++........+++..++..+.++..++++ .+..|...+....+|.+.|++.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------l~~~le~~~~~~~ek~~~l~~~~ 108 (475)
T PRK10361 47 AAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLRE-------VTTRMEAAQQHADDKIRQMINSE 108 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444 44445555555566666666543
No 400
>PLN02939 transferase, transferring glycosyl groups
Probab=29.17 E-value=5e+02 Score=29.63 Aligned_cols=105 Identities=27% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhcHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH
Q 022306 99 SEKEIEELVALREQ-VEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA 177 (299)
Q Consensus 99 ~~k~~eEl~~LreQ-VeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqA 177 (299)
.+|+.==|-..|.| +++|++-|.||| +++.+|+-|.-.|+|-|..+|.+-. .++.-.=...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 201 (977)
T PLN02939 140 AEKNILLLNQARLQALEDLEKILTEKE--------------ALQGKINILEMRLSETDARIKLAAQ----EKIHVEILEE 201 (977)
T ss_pred HHhhhHhHHHHHHHHHHHHHHHHHHHH--------------HHHhhHHHHHHHhhhhhhhhhhhhh----ccccchhhHH
Q ss_pred HHHHHHHHHHHh-----------hhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcC
Q 022306 178 ALEKSQWEAMTV-----------SRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 221 (299)
Q Consensus 178 aLEKlewE~~~s-----------n~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~ 221 (299)
-||||-.|+... ..-...|.++--.|..+|..|...+....+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (977)
T PLN02939 202 QLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETE 256 (977)
T ss_pred HHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
No 401
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=29.15 E-value=5.5e+02 Score=25.04 Aligned_cols=23 Identities=9% Similarity=0.234 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHH
Q 022306 192 KAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 192 Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
.+..++.++...+.++......+
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554
No 402
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=28.54 E-value=7.3e+02 Score=26.29 Aligned_cols=90 Identities=29% Similarity=0.280 Sum_probs=56.4
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------------HHHHHHHH-HHHHHHHH--------HHHh
Q 022306 98 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESS---------------KSQVNAVH-LKLDELKR--------LAAE 153 (299)
Q Consensus 98 ~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~---------------~~em~a~~-akvDELr~--------~lae 153 (299)
..+--++++-+|+.|++-..-++-.=...|+|.+.- -..|...| .+|++|++ .--|
T Consensus 292 ~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreE 371 (593)
T KOG4807|consen 292 GHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREE 371 (593)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567789999999998888876666777776543 25666554 45665554 4457
Q ss_pred hHHHHH-HHhHHhhHHHHhhhhHHHHHHHHHHHHHHhh
Q 022306 154 KDSLIK-STQLQLSDAKIKLADKQAALEKSQWEAMTVS 190 (299)
Q Consensus 154 Ke~lik-Stq~QLsdaki~LadKqAaLEKlewE~~~sn 190 (299)
||.|+- -|-.-.+ ..=|-|.|--|.+++|+-++-
T Consensus 372 KdrLLAEETAATiS---AIEAMKnAhrEEmeRELeKsq 406 (593)
T KOG4807|consen 372 KDRLLAEETAATIS---AIEAMKNAHREEMERELEKSQ 406 (593)
T ss_pred HHhhhhhhhhhhhH---HHHHHHHHHHHHHHHHHHhhh
Confidence 887753 1111111 123457777888888887653
No 403
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.41 E-value=3.3e+02 Score=23.75 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=29.5
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 100 EKEIEELVALREQVEDLQRKMFE---KDELLKSLESSKSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 100 ~k~~eEl~~LreQVeeLqkKL~E---KDelLkSae~~~~em~a~~akvDELr~~la 152 (299)
.+...+...|+.++.+|++++.- .||--|-+. +.-+++.+.++++.++.++.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaK-l~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAK-LNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999998887643 454444443 13344444444444444433
No 404
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=28.38 E-value=5.5e+02 Score=26.49 Aligned_cols=102 Identities=20% Similarity=0.328 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
.++...-+++..|+++|.+...++..++. +..++..+++++..+.+++ +-.|-..|.+.+.+|..+.
T Consensus 76 ~~l~~a~~e~~~L~~eL~~~~~~l~~L~~----L~~i~~~l~~~~~al~~~~---------~~~Aa~~L~~~~~~L~~l~ 142 (593)
T PF06248_consen 76 PQLRDAAEELQELKRELEENEQLLEVLEQ----LQEIDELLEEVEEALKEGN---------YLDAADLLEELKSLLDDLK 142 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHhcC
Confidence 34444445555555555555555555443 3445555555555555443 2334445666666666542
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHH-HHHHHHhhhh
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGEMS-SFMQIFEGLI 218 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~eIs-slm~~fe~lt 218 (299)
-.--..-+=...|..++..+...|. .|...|+++.
T Consensus 143 ~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~lv 178 (593)
T PF06248_consen 143 SSKFEELKILKLLKDEYSELRENLQYQLSEEWERLV 178 (593)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 1111112334456666666666665 6666777665
No 405
>PRK11519 tyrosine kinase; Provisional
Probab=28.33 E-value=7.5e+02 Score=26.35 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 022306 103 IEELVALREQVEDLQRKMFE-------------KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQ 164 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~E-------------KDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~Q 164 (299)
.+.+..|+.+++..+++|.+ -..++..+.....++..+..++.+|...+.++--.+++++.+
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~ 347 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEK 347 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 45566666666665555532 222334444444555555555555555555554445554444
No 406
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.15 E-value=3.1e+02 Score=25.06 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFE-KDELLKSLESSKSQVNAVHLKLDEL 147 (299)
Q Consensus 105 El~~LreQVeeLqkKL~E-KDelLkSae~~~~em~a~~akvDEL 147 (299)
++..|..+|++|++++.| ||.+|+..-.+.|=..-+....+++
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~ 76 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKA 76 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777666665 5555665555544443333333333
No 407
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=27.96 E-value=1e+02 Score=25.40 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhhh
Q 022306 256 EAREAYITAVAMAKEKQDEESMATAARARLHLQ 288 (299)
Q Consensus 256 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~Lq 288 (299)
.||..|+.||..||+.--++.=....+|+..|.
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~ 48 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVEQAGMCLN 48 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 589999999999999988877777777776543
No 408
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.63 E-value=2.1e+02 Score=27.06 Aligned_cols=49 Identities=27% Similarity=0.319 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~la 152 (299)
+|+..++.+=++|+....-|-.---.++.++.|+..+...+|.|-+||-
T Consensus 49 eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQLP 97 (211)
T COG3167 49 EELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQLP 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCC
Confidence 5777777778888888888877777788888888888888888877773
No 409
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=27.58 E-value=6.5e+02 Score=25.42 Aligned_cols=110 Identities=17% Similarity=0.256 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh----hh
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLE----SSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL----AD 174 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae----~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~L----ad 174 (299)
-.++..|..|..-|++|+--|-+.++-+. .+.++-.-+.+-++-|..-+.-=++=.+-+-.==-+++|.. .|
T Consensus 8 ga~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqd 87 (389)
T KOG4687|consen 8 GAEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQD 87 (389)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhH
Confidence 45899999999999999999999987654 45555555555555444443322221111111224678887 67
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
.-+.+++.-.|--+-.+-++.|-..+..+-++.-.|+.
T Consensus 88 Laa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfRe 125 (389)
T KOG4687|consen 88 LAADIEETKEENLKLRTDREALLDQKADLHGDCELFRE 125 (389)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 88888888888888888888888888888777776664
No 410
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.55 E-value=5.5e+02 Score=28.04 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhHHhhHHHHhhhhHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEK-DSLIKSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeK-e~likStq~QLsdaki~LadKqAaLE 180 (299)
+..++-.|-+.++..++++. +..+.++....++..+++.+.+.+..+.++ +.++.-+ ..+|+..+.+.+...+
T Consensus 514 ~~~~~~~li~~l~~~~~~~e---~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~---~~~a~~~l~~a~~~~~ 587 (782)
T PRK00409 514 DKEKLNELIASLEELERELE---QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA---EKEAQQAIKEAKKEAD 587 (782)
T ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 33344445444444444443 344555555566666666666655555433 3333332 2334455555555555
Q ss_pred HHHHHHHH
Q 022306 181 KSQWEAMT 188 (299)
Q Consensus 181 KlewE~~~ 188 (299)
.+-.++..
T Consensus 588 ~~i~~lk~ 595 (782)
T PRK00409 588 EIIKELRQ 595 (782)
T ss_pred HHHHHHHH
Confidence 55555543
No 411
>PRK00295 hypothetical protein; Provisional
Probab=27.50 E-value=2.9e+02 Score=21.23 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 151 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~l 151 (299)
+.+.|++|+-+|.-=+..+..+. ..|..-+..||.|++++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln---~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALN---DVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 44567777777766555444333 33333444445554443
No 412
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=27.32 E-value=1e+02 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=13.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 195 KLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 195 ~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
..+.-|++++.++..|-.+++.+.
T Consensus 62 e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 62 EKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334445566666666666666655
No 413
>PRK14149 heat shock protein GrpE; Provisional
Probab=26.57 E-value=2.9e+02 Score=25.48 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=24.5
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 022306 98 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAV 140 (299)
Q Consensus 98 ~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~ 140 (299)
+++++.+.+..|+.++++|+ |.+|+..-.+.|=-.-+
T Consensus 37 ~~~~~~~~~~~l~~e~~elk------d~~lR~~AefEN~rKR~ 73 (191)
T PRK14149 37 ASEKEGEIKEDFELKYKEMH------EKYLRVHADFENVKKRL 73 (191)
T ss_pred cccccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 36788888999999998884 44566555444433333
No 414
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=26.43 E-value=4e+02 Score=22.52 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 022306 108 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDS 156 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~ 156 (299)
.+--|+=.+-.++-||-.-.+.+..-.++|..+.+++|.||.+-.+|=.
T Consensus 43 ~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~eAR~AlDalR~eH~~klr 91 (96)
T PF12210_consen 43 AMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKEARAALDALREEHREKLR 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555556666666678899999999999998887744
No 415
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=26.30 E-value=3.4e+02 Score=21.77 Aligned_cols=85 Identities=15% Similarity=0.288 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH---H
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS---F 210 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIss---l 210 (299)
..+=..|..+--.|+..+..=+.+|+........|-.....-.-.-...+-|+..-...++.|+.+...++-.|.. +
T Consensus 31 ~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y 110 (126)
T PF13863_consen 31 KQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKY 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666777666555555444444333333344444444444444444444444444442 3
Q ss_pred HHHHhhhh
Q 022306 211 MQIFEGLI 218 (299)
Q Consensus 211 m~~fe~lt 218 (299)
..||++++
T Consensus 111 ~~fL~~v~ 118 (126)
T PF13863_consen 111 EEFLEKVV 118 (126)
T ss_pred HHHHHHhc
Confidence 33444444
No 416
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.30 E-value=2.3e+02 Score=31.29 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
.+|+.+.+.+.++.+|+ ..-...+.+..+.||.++-++-....++..++.+...++--+..-|.++
T Consensus 505 ~ei~~~~~~ln~~~qq~--------------~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~ 570 (847)
T KOG0998|consen 505 REISSLEKELNELQQQL--------------SVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELF 570 (847)
T ss_pred hhHHHHHHHHhhhHHHH--------------hHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 45555555556655555 2222222233333777777777777778888888888877777777777
Q ss_pred hhhh
Q 022306 215 EGLI 218 (299)
Q Consensus 215 e~lt 218 (299)
+.+.
T Consensus 571 ~~~~ 574 (847)
T KOG0998|consen 571 EQLL 574 (847)
T ss_pred hhhh
Confidence 7655
No 417
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.29 E-value=4.3e+02 Score=22.89 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 191 RKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 191 ~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
..|..+++|++.++++|.++...+++|-
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777776666666554
No 418
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.17 E-value=5.5e+02 Score=24.06 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=14.9
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
+|.|.-.=..+++.||++-..+.+++.-+...-.
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~ 126 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSK 126 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHH
Confidence 4444444444444444444444444443333333
No 419
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=26.12 E-value=3.7e+02 Score=24.35 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 022306 130 LESSKSQVNAVHLKLDELKRLAAEKDSLI 158 (299)
Q Consensus 130 ae~~~~em~a~~akvDELr~~laeKe~li 158 (299)
-+.+.+++--+...+..++.++..|+.-.
T Consensus 97 N~~L~~dl~klt~~~~~l~~eL~~ke~~~ 125 (182)
T PF15035_consen 97 NEALQEDLQKLTQDWERLRDELEQKEAEW 125 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666555443
No 420
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=26.08 E-value=70 Score=23.76 Aligned_cols=14 Identities=57% Similarity=0.686 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 022306 107 VALREQVEDLQRKM 120 (299)
Q Consensus 107 ~~LreQVeeLqkKL 120 (299)
.+|+.||+.|+.+|
T Consensus 2 ~aLrqQv~aL~~qv 15 (46)
T PF09006_consen 2 NALRQQVEALQGQV 15 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35566666665544
No 421
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=25.98 E-value=6.7e+02 Score=24.99 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh---------hhHHHHHHHHHHHHHHhhhHHHHHHH
Q 022306 128 KSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL---------ADKQAALEKSQWEAMTVSRKAEKLQE 198 (299)
Q Consensus 128 kSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~L---------adKqAaLEKlewE~~~sn~Kve~Lq~ 198 (299)
.-+..++.+-..+...|++|++.+.|=..=|+.+.-++.+.++.. .++...|.+|| ..+++.+.||-
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLE----k~~~q~~qLe~ 147 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLE----KLREQIEQLER 147 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH----HHHHHHHHHHH
Confidence 344566788888888888888888887777777777777665543 56667777773 45677888888
Q ss_pred HHhhhhhhHHHH
Q 022306 199 EVESMQGEMSSF 210 (299)
Q Consensus 199 dl~~m~~eIssl 210 (299)
|+-++-.|..-+
T Consensus 148 d~qs~lDEkeEl 159 (319)
T PF09789_consen 148 DLQSLLDEKEEL 159 (319)
T ss_pred HHHHHHHHHHHH
Confidence 877776666533
No 422
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.90 E-value=7.3e+02 Score=25.38 Aligned_cols=54 Identities=33% Similarity=0.442 Sum_probs=37.0
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022306 95 RALVSEKEIEELVALREQVEDLQ----RKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEK 154 (299)
Q Consensus 95 ~~~~~~k~~eEl~~LreQVeeLq----kKL~EKDelLkSae~~~~em~a~~akvDELr~~laeK 154 (299)
+-..+.|.+|=+..|+..-++++ +++-||+.-|+.+| ..++++.|.|++...+-
T Consensus 321 qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~E------kel~~kf~~lkr~h~eE 378 (406)
T KOG3859|consen 321 QETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAE------KELHEKFDRLKRLHQEE 378 (406)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 44556677777777776666654 56777877777766 46788888887766543
No 423
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=25.78 E-value=1.2e+02 Score=24.93 Aligned_cols=32 Identities=28% Similarity=0.200 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhh
Q 022306 256 EAREAYITAVAMAKEKQDEESMATAARARLHL 287 (299)
Q Consensus 256 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 287 (299)
.||..|+.|+..||+.--++.=....+|+..|
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l 45 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEANDSL 45 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 58999999999999998877777777776554
No 424
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.68 E-value=6.8e+02 Score=25.00 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLA 151 (299)
Q Consensus 135 ~em~a~~akvDELr~~l 151 (299)
+++.+..+||+|+.-++
T Consensus 184 ~ele~tk~Klee~Qnel 200 (330)
T KOG2991|consen 184 GELEQTKDKLEEAQNEL 200 (330)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 44444444444444433
No 425
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.67 E-value=6.5e+02 Score=25.89 Aligned_cols=86 Identities=26% Similarity=0.254 Sum_probs=51.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----hHHhhHHHHhhhhHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST----QLQLSDAKIKLADKQA 177 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likSt----q~QLsdaki~LadKqA 177 (299)
-+||-..|+-|+++|++.--||+| ..-+|.++++|--++++-+ |.-+.+.+-||.-+|+
T Consensus 139 ~~EEn~~lqlqL~~l~~e~~Ekee-----------------esq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~ 201 (401)
T PF06785_consen 139 LREENQCLQLQLDALQQECGEKEE-----------------ESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQA 201 (401)
T ss_pred HHHHHHHHHHhHHHHHHHHhHhHH-----------------HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence 345555666666666666666654 3334455555544444444 4446678889999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 178 ALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 178 aLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.+-+||. | |..+-+||-.|-++=....
T Consensus 202 yI~~LEs-------K-------VqDLm~EirnLLQle~~~~ 228 (401)
T PF06785_consen 202 YIGKLES-------K-------VQDLMYEIRNLLQLESDMK 228 (401)
T ss_pred HHHHHHH-------H-------HHHHHHHHHHHHHhhhhhh
Confidence 9888764 3 3445566666655444444
No 426
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=25.62 E-value=4.7e+02 Score=29.12 Aligned_cols=15 Identities=13% Similarity=0.395 Sum_probs=10.1
Q ss_pred hhcHHHHHHHHHHHH
Q 022306 100 EKEIEELVALREQVE 114 (299)
Q Consensus 100 ~k~~eEl~~LreQVe 114 (299)
..-++.+..+.++|+
T Consensus 600 ~~lkeki~~~~~Ei~ 614 (762)
T PLN03229 600 DDLKEKVEKMKKEIE 614 (762)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667777777666
No 427
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=25.51 E-value=4.3e+02 Score=30.26 Aligned_cols=86 Identities=24% Similarity=0.320 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHHHH-------HHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHh---
Q 022306 102 EIEELVALREQVEDLQR-------KMFEKDELLKSL----ESSKSQVNAVHLKLDELKRLAAEKDSL-----IKSTQ--- 162 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqk-------KL~EKDelLkSa----e~~~~em~a~~akvDELr~~laeKe~l-----ikStq--- 162 (299)
-..|+..|+++++.+.+ .+..+|+-++-. ..+..+..++.+++.+|+.+.+..... .+-.+
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQAA 226 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 44555566655542222 223455555433 233456666666777666665443322 11111
Q ss_pred --HHhhHHHHhhhhHHHHHHHHHHHHHH
Q 022306 163 --LQLSDAKIKLADKQAALEKSQWEAMT 188 (299)
Q Consensus 163 --~QLsdaki~LadKqAaLEKlewE~~~ 188 (299)
..|++++.. .---.+|...=|++.+
T Consensus 227 ~~~~~~E~~tr-~~Id~~L~~aGW~~~~ 253 (1123)
T PRK11448 227 KRLELSEEETR-ILIDQQLRKAGWEADS 253 (1123)
T ss_pred ccccCCHHHHH-HHHHHHHHHCCCCCCC
Confidence 245565555 2233456677788765
No 428
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=25.50 E-value=6.4e+02 Score=24.61 Aligned_cols=46 Identities=24% Similarity=0.173 Sum_probs=27.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 165 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
+.+.+.+|.|+.+-|++.+ ..++|+..|+.+|-.++.++..--.+|
T Consensus 143 ~R~~r~~l~d~I~kLk~k~----P~s~kl~~LeqELvraEae~lvaEAqL 188 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKD----PQSPKLVVLEQELVRAEAENLVAEAQL 188 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-----TTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5566667777766665432 346777777777766666655333333
No 429
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=25.48 E-value=5e+02 Score=23.31 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 022306 110 REQVEDLQ 117 (299)
Q Consensus 110 reQVeeLq 117 (299)
+.++..++
T Consensus 70 ~~~~~~~~ 77 (322)
T TIGR01730 70 LAQLAAAE 77 (322)
T ss_pred HHHHHHHH
Confidence 33333333
No 430
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.35 E-value=3.6e+02 Score=27.01 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 022306 131 ESSKSQVNAVHLKLDE 146 (299)
Q Consensus 131 e~~~~em~a~~akvDE 146 (299)
+.+..+-|.+-++|..
T Consensus 47 ~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 47 EELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 431
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=25.34 E-value=9.9e+02 Score=26.74 Aligned_cols=114 Identities=16% Similarity=0.170 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHhHHhhHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSL----ESSKSQVNAVHLKLDELKRL----------AAEKDSLIKSTQLQLSDA 168 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSa----e~~~~em~a~~akvDELr~~----------laeKe~likStq~QLsda 168 (299)
.|-+.-|.-=|++-+.||--++|+|..- -++..+--.|-+.|-+||-. .-+|-++-+-.=.++.
T Consensus 138 gEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn-- 215 (861)
T KOG1899|consen 138 GEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN-- 215 (861)
T ss_pred hhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--
Confidence 3344445555566666777777777532 22223333333334443332 2233333333333333
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH-HHHHhhhh
Q 022306 169 KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF-MQIFEGLI 218 (299)
Q Consensus 169 ki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl-m~~fe~lt 218 (299)
++|.+++-.---+-||-.+-+..-+..|++.++....||-.+ ..+++.+.
T Consensus 216 ~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~ 266 (861)
T KOG1899|consen 216 QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLM 266 (861)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 444444433222334444444445678888888888887644 33444444
No 432
>PRK14151 heat shock protein GrpE; Provisional
Probab=25.28 E-value=3e+02 Score=24.82 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhHHh
Q 022306 102 EIEELVALREQVEDLQRKMFE-KDELLKSLESSKSQVNAVHLKLDELKRLA-AEKDSLIKSTQLQL 165 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~E-KDelLkSae~~~~em~a~~akvDELr~~l-aeKe~likStq~QL 165 (299)
..+....|.+++++|++++.| ||.+|+. .|.++-.|+.. .|++...+.....+
T Consensus 18 ~~~~~~~l~~~i~~le~e~~el~d~~lR~-----------~Ae~eN~rkR~~kE~e~~~~~a~~~~ 72 (176)
T PRK14151 18 EAAAGDDLTARVQELEEQLAAAKDQSLRA-----------AADLQNVRRRAEQDVEKAHKFALEKF 72 (176)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666554 3444443 44444444332 34455555444443
No 433
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=25.23 E-value=5.2e+02 Score=23.47 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 022306 128 KSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 207 (299)
Q Consensus 128 kSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eI 207 (299)
+.+...=.++..+++.|+.++.. .....=.....=+.+-...|.+-++.|.-++.-+-.-|.+...++.-.+..+..|
T Consensus 45 ~~i~~aP~~~~~l~~~l~~l~~~--~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l 122 (240)
T PF12795_consen 45 KQIDQAPKEIRELQKELEALKSQ--DAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQL 122 (240)
T ss_pred HHHHHhHHHHHHHHHHHHhhhcc--ccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 33444445555555555555443 1112212222223333444555555555555555555555555555555566666
Q ss_pred HHHHHHHhhhh
Q 022306 208 SSFMQIFEGLI 218 (299)
Q Consensus 208 sslm~~fe~lt 218 (299)
+..+..++.|.
T Consensus 123 ~~~~~~l~ei~ 133 (240)
T PF12795_consen 123 SEARQRLQEIR 133 (240)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
No 434
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=25.06 E-value=8.7e+02 Score=26.00 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHH------hhHHHHHHHhHHhhHHHHhhhhH----HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q 022306 137 VNAVHLKLDELKRLAA------EKDSLIKSTQLQLSDAKIKLADK----QAALEKSQWEAMTVSRKAEKLQEEVESMQGE 206 (299)
Q Consensus 137 m~a~~akvDELr~~la------eKe~likStq~QLsdaki~LadK----qAaLEKlewE~~~sn~Kve~Lq~dl~~m~~e 206 (299)
.+...+.|||++.++- -|+-||.|.+.+-.. |.=-+| ++-+|++--|.=.+-.-.+.+|..+-.++.+
T Consensus 261 l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i--~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~ 338 (554)
T KOG4677|consen 261 LIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLI--IQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQ 338 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--cCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 3445566777766543 367777766654211 122344 6667766666555544445555555555555
Q ss_pred HHHHHHHHhhh
Q 022306 207 MSSFMQIFEGL 217 (299)
Q Consensus 207 Isslm~~fe~l 217 (299)
|--+-++-..+
T Consensus 339 ~~d~EAq~r~l 349 (554)
T KOG4677|consen 339 IIDIEAQDRHL 349 (554)
T ss_pred HHHHHHHHHhH
Confidence 44444433333
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.99 E-value=9.3e+02 Score=26.33 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=6.4
Q ss_pred HHHHHHhhhhhH
Q 022306 280 AARARLHLQSFV 291 (299)
Q Consensus 280 aAeaR~~Lq~fv 291 (299)
+.+|+..|..|+
T Consensus 714 ~eeA~~~l~~fl 725 (782)
T PRK00409 714 YEEALERLDKYL 725 (782)
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 436
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=24.96 E-value=1.2e+02 Score=25.81 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhhh
Q 022306 256 EAREAYITAVAMAKEKQDEESMATAARARLHLQ 288 (299)
Q Consensus 256 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~Lq 288 (299)
.||..|+.|+.+||+.--++.=....+|+..|.
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~ 62 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQSRMALN 62 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 589999999999999998888887777776553
No 437
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.95 E-value=8e+02 Score=25.53 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022306 127 LKSLESSKSQVNAVHLKLDELKRLAAEK 154 (299)
Q Consensus 127 LkSae~~~~em~a~~akvDELr~~laeK 154 (299)
+.....+..+++.+...++.+...++++
T Consensus 343 ~~~~~~l~~~l~~l~~~~~~~~~~i~~~ 370 (560)
T PF06160_consen 343 LEIVRELEKQLKELEKRYEDLEERIEEQ 370 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444444444444444444444444
No 438
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.70 E-value=9.7e+02 Score=26.45 Aligned_cols=101 Identities=23% Similarity=0.275 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKS-LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkS-ae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLE 180 (299)
...|+..|+..+..|+.++.+-..--+- -....+++..+..++.-+.+...+....|..++.+|+.+.-.-++-++.|-
T Consensus 364 av~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~Ln 443 (717)
T PF09730_consen 364 AVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLN 443 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3345555555555555544443331111 112245566666666666665555566677777777777777777777666
Q ss_pred HHHHHHHHhhhHHHHHHHHHhh
Q 022306 181 KSQWEAMTVSRKAEKLQEEVES 202 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq~dl~~ 202 (299)
-.|-|+.+-+.=...|---|-.
T Consensus 444 sAQDELvtfSEeLAqLYHHVC~ 465 (717)
T PF09730_consen 444 SAQDELVTFSEELAQLYHHVCM 465 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655444444444433
No 439
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=24.51 E-value=7.3e+02 Score=27.71 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=11.0
Q ss_pred HHHHHHHhhHHHHHHHhHHhh
Q 022306 146 ELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 146 ELr~~laeKe~likStq~QLs 166 (299)
-|+.|+++|+.=+.+.+.+|.
T Consensus 242 ~L~Eq~~eK~~e~~rl~~~lv 262 (861)
T KOG1899|consen 242 PLREQRSEKNDEEMRLLRTLV 262 (861)
T ss_pred hHHHHHhhhhhHHHHHHHHHH
Confidence 345555555555555555553
No 440
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.46 E-value=7.3e+02 Score=24.93 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 109 LREQVEDLQRKMFEKD--ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 109 LreQVeeLqkKL~EKD--elLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
+|+-.+..++.+.-+- ..+..+-.+-.+...+..++|.|+.+..+--.-|.. ++..-. ..+.+--++
T Consensus 7 ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~-------~~~~~~----~~~~l~~~~ 75 (425)
T PRK05431 7 IRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQ-------AKRKGE----DAEALIAEV 75 (425)
T ss_pred HHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhcCC----cHHHHHHHH
Confidence 3444444444444441 113333334455555566666666554443333321 111101 233455566
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 187 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 187 ~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
..-..++..|+.++..++.++..++..+=+|.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 76 KELKEEIKALEAELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 67777888888889888888888888877777
No 441
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=24.35 E-value=3.4e+02 Score=22.42 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 022306 177 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 177 AaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~ 212 (299)
.-+.+|+.++..-..-++.|+..++.++.|-..|-.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555444443
No 442
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.31 E-value=2.1e+02 Score=27.03 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCC--CCCCCCCcccccccCCCCCCCh
Q 022306 189 VSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNA--DDDYDIKPYYSDYLSDIDDLDD 248 (299)
Q Consensus 189 sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~--~~d~d~~p~~~d~l~~~d~~~~ 248 (299)
...+++.|+.-++...+=|..|-.+++.|. |+.-++. ++--++..|+++..+..|=+++
T Consensus 161 ~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~-N~~l~~e~V~~ikedieyYve~n~d~Df~ed 221 (233)
T PF04065_consen 161 KQERIEELESRIERHKFHIEKLELLLRLLD-NDELDPEQVEDIKEDIEYYVESNQDPDFEED 221 (233)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHcCCCCcccch
Confidence 566788888888899999998888888776 5544442 1123446677777666554433
No 443
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=24.23 E-value=1e+02 Score=27.33 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=30.6
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 022306 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQE 198 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~ 198 (299)
++-..-|.+|+.+.++..|..|+.+++.+|+-|+.
T Consensus 128 ~~l~~~i~lA~~e~~~~~L~~ei~kT~RRVNALE~ 162 (196)
T PF01813_consen 128 ELLELLIELAELETALRRLAEEIRKTQRRVNALEK 162 (196)
T ss_dssp HHHHHHHCHHHHHHHHHHHCHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456788999999999999999999999998875
No 444
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.18 E-value=6.7e+02 Score=25.93 Aligned_cols=103 Identities=12% Similarity=0.224 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 110 REQVEDLQRKMFEKDELLKS----LESSKSQVNAVHLKLDELKRL--AAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 110 reQVeeLqkKL~EKDelLkS----ae~~~~em~a~~akvDELr~~--laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
.+.|++|-....+ +.++- ++....++.+++..|-+.|.. +-+=+.-+.+....+..-+..|++.++-|..|.
T Consensus 229 E~~VN~Ls~rar~--D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~ 306 (434)
T PRK15178 229 EQHVNTVSARMQK--ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLM 306 (434)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544443 22222 233345555555555555432 334444445555555555556666666666555
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
.-.--.+-.|-.|+..+..|+.+|...+..+
T Consensus 307 ~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 307 VNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 5455667888888888888888888877654
No 445
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=24.15 E-value=1.3e+02 Score=25.08 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhh
Q 022306 256 EAREAYITAVAMAKEKQDEESMATAARARLHL 287 (299)
Q Consensus 256 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 287 (299)
.||..|+.||.+||+.--++.-....+|+..|
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l 50 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNEEL 50 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 58999999999999998888777777777654
No 446
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=24.07 E-value=3.9e+02 Score=21.67 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESSK 134 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~~ 134 (299)
|-+|..+|+++|..|++=+.-+.+.+
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv 28 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILV 28 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888888888886555444443
No 447
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=23.90 E-value=3.9e+02 Score=24.07 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 129 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 129 Sae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
-.+.+..+.+.+.++|++|...++.|+--|-|-|+==|-. .+-|+-+-|.+||
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~--e~ee~~~~l~~le 138 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRR--EMEEMLERLQKLE 138 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHH--HHHHHHHHHHHHH
Confidence 3566778888888999999999999988888877644433 2334444444443
No 448
>PLN02320 seryl-tRNA synthetase
Probab=23.78 E-value=7.1e+02 Score=26.19 Aligned_cols=101 Identities=11% Similarity=0.160 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 022306 106 LVALREQVEDLQRKMFEKDE--LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDe--lLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKle 183 (299)
+..+|+..+.+++.|.-+-. -+..+-.+-++...+..++|+|+.+- ..+.+.+.. +..-.+. ++|-
T Consensus 69 ~k~ir~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~er---n~~sk~i~~-----~~~~~~~----~~l~ 136 (502)
T PLN02320 69 FKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAER---NAVANKMKG-----KLEPSER----QALV 136 (502)
T ss_pred HHHHHhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh-----hhCCCCH----HHHH
Confidence 55566666666666655531 13444444455666666666666443 333333321 1111222 3344
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
-|+..-..+...|++++..++.++..++..+=+|.
T Consensus 137 ~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~ 171 (502)
T PLN02320 137 EEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMT 171 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 46667777888999999999999999888888887
No 449
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.61 E-value=3.8e+02 Score=21.30 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhh
Q 022306 179 LEKSQWEAMTVSRKAEKLQEEVESM 203 (299)
Q Consensus 179 LEKlewE~~~sn~Kve~Lq~dl~~m 203 (299)
+++++-++..-..+.+.++..+..+
T Consensus 103 ~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 103 IEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666666655543
No 450
>PF15294 Leu_zip: Leucine zipper
Probab=23.38 E-value=7.1e+02 Score=24.41 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=14.9
Q ss_pred hhcHHHHHHHHHHHHHHHHHHh
Q 022306 100 EKEIEELVALREQVEDLQRKMF 121 (299)
Q Consensus 100 ~k~~eEl~~LreQVeeLqkKL~ 121 (299)
+.-..|+..|+++.+-|+-+|.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~ 149 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLK 149 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577778888777776654
No 451
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.21 E-value=97 Score=22.48 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhh
Q 022306 180 EKSQWEAMTVSRKAEKLQEEVESMQ 204 (299)
Q Consensus 180 EKlewE~~~sn~Kve~Lq~dl~~m~ 204 (299)
=++.|++...+++++++|.+++.++
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788888888888888777653
No 452
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.18 E-value=3.7e+02 Score=26.66 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhHHhhHHHHh
Q 022306 141 HLKLDELKRLAAEKDSLIKSTQLQLSDAKIK 171 (299)
Q Consensus 141 ~akvDELr~~laeKe~likStq~QLsdaki~ 171 (299)
...|--|++.|.+||-+|=.---|+++-|-+
T Consensus 231 keeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 231 KEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 3456667888888888888888888877754
No 453
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.17 E-value=5e+02 Score=22.52 Aligned_cols=97 Identities=24% Similarity=0.330 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh-----hHHHHhhhhHHHHHHHHHH
Q 022306 110 REQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL-----SDAKIKLADKQAALEKSQW 184 (299)
Q Consensus 110 reQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QL-----sdaki~LadKqAaLEKlew 184 (299)
++++..+|.---+...++..--....+++.+...++||-+. .+-.-.-+.++.=| .++.-.| .--+|-||-
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l-~eD~~vYk~VG~llvk~~k~~~~~eL---~er~E~Le~ 84 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL-DEDAPVYKKVGNLLVKVSKEEAVDEL---EERKETLEL 84 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccHHHHHhhhHHhhhhHHHHHHHH---HHHHHHHHH
Confidence 44444444444444556666666677888888888888653 33333333333222 2333333 334666777
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 185 EAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 185 E~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
.+.|=.+.-+++++.+..|+.+|-..
T Consensus 85 ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 85 RIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888877643
No 454
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.99 E-value=5.3e+02 Score=24.20 Aligned_cols=7 Identities=29% Similarity=0.340 Sum_probs=3.8
Q ss_pred hhhcCCH
Q 022306 268 AKEKQDE 274 (299)
Q Consensus 268 AKenp~e 274 (299)
-+.+|+.
T Consensus 170 l~~yP~s 176 (263)
T PRK10803 170 VKKYPDS 176 (263)
T ss_pred HHHCcCC
Confidence 3456664
No 455
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.76 E-value=8.8e+02 Score=25.23 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=25.6
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 166 SDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 166 sdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
|.....|.+....|+.++-+...-+..+..|..|-..-+-.+..|...+.
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555554444444555554444
No 456
>PF14071 YlbD_coat: Putative coat protein
Probab=22.76 E-value=2e+02 Score=25.12 Aligned_cols=34 Identities=12% Similarity=0.279 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCC
Q 022306 192 KAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVN 225 (299)
Q Consensus 192 Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~ 225 (299)
=++.||+-|++|..=|++++.++.....|.....
T Consensus 78 D~nq~q~hl~~~sqai~~vQ~~l~qFq~~~~~~~ 111 (124)
T PF14071_consen 78 DVNQMQKHLNNVSQAIGSVQQVLSQFQGNGQKQS 111 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3678999999999999999999998886655444
No 457
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=22.74 E-value=2.6e+02 Score=22.18 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=25.8
Q ss_pred CCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 86 SDSFSIFSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 86 ~en~s~~~s~~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
|.||-+-.+..-|.+--..-+..|+++++.|++++.+...-+..++..
T Consensus 66 G~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 113 (120)
T PF02996_consen 66 GAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQT 113 (120)
T ss_dssp ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred eCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555666666666666665555444444433
No 458
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.69 E-value=6.5e+02 Score=23.70 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHH
Q 022306 134 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQ 197 (299)
Q Consensus 134 ~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq 197 (299)
..++.++.+++-+|++..+.=|+=|+++++-|+ +-++|-.+.+|--|+.--..+...+.
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888999999999999888888888888876 33445555555555555444444443
No 459
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.62 E-value=1e+03 Score=27.24 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 022306 102 EIEELVALREQV-------EDLQRKMFEKDELLKSLESSK----------SQVNAVHLKLDELKRLAAEKDSLIKSTQLQ 164 (299)
Q Consensus 102 ~~eEl~~LreQV-------eeLqkKL~EKDelLkSae~~~----------~em~a~~akvDELr~~laeKe~likStq~Q 164 (299)
..+|+.+++.+. +.|.++|-+|+....+..... +-+.-.+.++-|+.+.+++++.-.+..|.+
T Consensus 735 ~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e 814 (970)
T KOG0946|consen 735 QNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSE 814 (970)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 556777766654 556678888888877766653 334445567778888899999888888888
Q ss_pred hhHHHHh
Q 022306 165 LSDAKIK 171 (299)
Q Consensus 165 Lsdaki~ 171 (299)
+.--|..
T Consensus 815 ~~~~keq 821 (970)
T KOG0946|consen 815 LTQLKEQ 821 (970)
T ss_pred HHHHHHH
Confidence 7765543
No 460
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=22.61 E-value=4.9e+02 Score=25.03 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=7.6
Q ss_pred HhhhhhhHHHHHHHHhhh
Q 022306 200 VESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 200 l~~m~~eIsslm~~fe~l 217 (299)
+-..-.+.+.|+.+...+
T Consensus 127 I~~~~~~~~~l~~~~~v~ 144 (378)
T TIGR01554 127 IEKLVEQYPSLREYVTVE 144 (378)
T ss_pred HHHHHhhhhhhhhhcEEE
Confidence 333333444444444443
No 461
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=22.53 E-value=4.8e+02 Score=22.12 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022306 105 ELVALREQVEDLQRKMF 121 (299)
Q Consensus 105 El~~LreQVeeLqkKL~ 121 (299)
|-..||.|..-|++-+.
T Consensus 6 eYsKLraQ~~vLKKaVi 22 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVI 22 (102)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554443
No 462
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.34 E-value=7.9e+02 Score=24.55 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 131 ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 131 e~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
...+.++.-++..|..-.-.+.-||.+ ++.||...-..+...++.|..++-.....+.-|..+..+|+.+-.++...
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~sREk~---iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIESREKY---INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666654 56788888888888888888888888888888888887777766665554
Q ss_pred HHHHh
Q 022306 211 MQIFE 215 (299)
Q Consensus 211 m~~fe 215 (299)
-...+
T Consensus 314 K~eme 318 (359)
T PF10498_consen 314 KQEME 318 (359)
T ss_pred HHHHH
Confidence 44443
No 463
>PRK14147 heat shock protein GrpE; Provisional
Probab=22.09 E-value=3.8e+02 Score=24.00 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLD 145 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvD 145 (299)
++..|++++++| ||.+|+..-.+.|--.-....++
T Consensus 26 ~l~~l~~e~~el------kd~~lR~~Ad~eN~rkR~~kE~e 60 (172)
T PRK14147 26 EVESLRSEIALV------KADALRERADLENQRKRIARDVE 60 (172)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554 34445554444444333333333
No 464
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=21.97 E-value=5.6e+02 Score=22.67 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 140 VHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 140 ~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
+.+.++.|++.+.+=+..++.+|..|.+.-......+.-+.+++-+.
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555544443
No 465
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=21.88 E-value=4.1e+02 Score=21.07 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 108 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~la 152 (299)
+|+.+++.|++=-.==+.+..+++.....|+.++..++.-...|.
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~~~t~~LLd 46 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETLRSAKSNMNRVQETVESTNTLLD 46 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666655544567778888888899999988888776653
No 466
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=21.79 E-value=2.3e+02 Score=24.95 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=8.2
Q ss_pred HHhhHHHHhhhhHHHHHHHH
Q 022306 163 LQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEKl 182 (299)
.++..++..+...++.|+.+
T Consensus 61 ~~~~~~~~~~~~~~~~l~~~ 80 (265)
T TIGR00999 61 YALEEAQAEVQAAKSELRSA 80 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444433
No 467
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.79 E-value=3.1e+02 Score=19.64 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=20.1
Q ss_pred hhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 100 EKEIEELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 100 ~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
..+.+++..+..+...++..+..+..-+..+...
T Consensus 30 ~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~ 63 (105)
T PF00435_consen 30 GSDLEELEEQLKKHKELQEEIESRQERLESLNEQ 63 (105)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3355566666666666666666666555555444
No 468
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=21.67 E-value=2.7e+02 Score=24.99 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhh
Q 022306 113 VEDLQRKMFEKDELLKSLESSK----------------------SQVNAVHLKLDELKRLAAEK 154 (299)
Q Consensus 113 VeeLqkKL~EKDelLkSae~~~----------------------~em~a~~akvDELr~~laeK 154 (299)
.+.=..+|+.-+++.+...... .++..++.-||+||.+++++
T Consensus 82 ~e~e~g~Lipa~eV~~~~s~~~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR~~l~~~ 145 (152)
T PF07278_consen 82 FEKETGQLIPAEEVRREMSEMAKAVVQVLETLPDILERDAGLPPEQVARVQSVIDDLRDQLAER 145 (152)
T ss_pred HHHHHcccCcHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444678899999888877763 88899999999999988865
No 469
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=21.65 E-value=7.2e+02 Score=27.75 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHH-hhHHHHHHHhHHhh
Q 022306 141 HLKLDELKRLAA-EKDSLIKSTQLQLS 166 (299)
Q Consensus 141 ~akvDELr~~la-eKe~likStq~QLs 166 (299)
..+|+++++++. |=+..|+|+.+..-
T Consensus 603 keki~~~~~Ei~~eie~v~~S~gL~~~ 629 (762)
T PLN03229 603 KEKVEKMKKEIELELAGVLKSMGLEVI 629 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 447788888776 55677777776554
No 470
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.55 E-value=4.4e+02 Score=21.25 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 165 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QL 165 (299)
.-..+..-+.+|.+.+-..++.-..+.....++..+..+|.+|-.-+..=|.+++.+...+
T Consensus 36 kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 36 KYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777777777777777777777778888888888888887777777777665443
No 471
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=21.51 E-value=4e+02 Score=20.80 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLES 132 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~ 132 (299)
--.++..+...|++|+++.++.+..++.+..
T Consensus 28 ~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~ 58 (80)
T PF11488_consen 28 RFKEIDSKDKELEELYQQDCKTEMEVKMLET 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999998866655543
No 472
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=21.48 E-value=2.4e+02 Score=29.27 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 022306 106 LVALREQVEDLQRKMFEKDELLK 128 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLk 128 (299)
+..|.++|+.|..++.+-++.|-
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~ 592 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVA 592 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555555555553
No 473
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=21.40 E-value=2e+02 Score=24.93 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 123 KDELLKSLESSKSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 123 KDelLkSae~~~~em~a~~akvDELr~~la 152 (299)
|-++..++..+.++++.+++++..||+++.
T Consensus 3 KkeiFd~v~~le~~l~~l~~el~~lK~~l~ 32 (114)
T COG4467 3 KKEIFDQVDNLEEQLGVLLAELGGLKQHLG 32 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777788888888888877775
No 474
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=21.37 E-value=3e+02 Score=21.08 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 022306 124 DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 174 (299)
Q Consensus 124 DelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~Lad 174 (299)
++.+..++..+++|..=.-.||+.-..+.+=-.|++..+..|.+|+.++..
T Consensus 4 Ee~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ae~kv~~ 54 (67)
T TIGR01280 4 EEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAEQRVRK 54 (67)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888878888999999999999999999999998876544
No 475
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=21.33 E-value=6.4e+02 Score=25.56 Aligned_cols=26 Identities=4% Similarity=0.162 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 193 AEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 193 ve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
...++..+..+..++.+|...+..|+
T Consensus 101 l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 101 LDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444444443
No 476
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.90 E-value=2.3e+02 Score=22.30 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 022306 124 DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA 173 (299)
Q Consensus 124 DelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~La 173 (299)
++++..++..+++|..=.-.||+.-..+.+=-.|++..+..|.+|+.++.
T Consensus 9 Ee~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~~ae~kv~ 58 (75)
T PRK14064 9 EEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMA 58 (75)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888888889889998888999999999988876653
No 477
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=20.83 E-value=4.5e+02 Score=21.11 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred HhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 188 TVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 188 ~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
..+..+..|..+++.|+.+|+-+...++...
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777776666666443
No 478
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=20.68 E-value=3.3e+02 Score=28.24 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=44.9
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 161 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 161 tq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
++.|+..-...+.+.+.-|+.+|....+ +-..|++=+..|+.+.++|+++|.+++
T Consensus 427 l~~~i~~l~~~i~~~~~rl~~~e~~~~~---qf~~m~~~~~~m~sq~~~L~q~l~~~~ 481 (483)
T COG1345 427 LNKQIKSLDKDIKSLDKRLEAAEERYKT---QFNTLDDMMTQMNSQSSYLTQQLVSVS 481 (483)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566777777778888888888888764 667788889999999999999999876
No 479
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.52 E-value=3.5e+02 Score=20.31 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=18.7
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHHHHH--HHHhhhhhcC
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGEMSSFM--QIFEGLIKND 221 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~eIsslm--~~fe~lt~n~ 221 (299)
.++..-..+.+.++.+-+.++.||+.|- ..+++++...
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~~ 70 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKKQ 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 3333333444555555555555555443 3355666443
No 480
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.42 E-value=1.4e+02 Score=27.67 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=10.7
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q 022306 100 EKEIEELVALREQVEDLQR 118 (299)
Q Consensus 100 ~k~~eEl~~LreQVeeLqk 118 (299)
++.+-|++.||.+|+.|..
T Consensus 102 e~~~~e~~elr~~~~~l~~ 120 (181)
T KOG3335|consen 102 EKRKQEIMELRLKVEKLEN 120 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345556666666665554
No 481
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=20.40 E-value=1.7e+02 Score=23.83 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhh
Q 022306 256 EAREAYITAVAMAKEKQDEESMATAARARLHL 287 (299)
Q Consensus 256 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 287 (299)
.||..|+.||.+||+.--++.-..-.+|...|
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l 44 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADEEL 44 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 58999999999999987666666666665544
No 482
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.29 E-value=4.2e+02 Score=27.15 Aligned_cols=91 Identities=12% Similarity=0.193 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhh
Q 022306 112 QVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSR 191 (299)
Q Consensus 112 QVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~ 191 (299)
.+|+|+-||.+.|. +-.....+|++++.-|==||-+.-|==..+-++ |...-....|.=..- -.
T Consensus 9 ~LeeLe~kLa~~d~---~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I------------e~~~~~s~qeKFl~I-R~ 72 (379)
T PF11593_consen 9 KLEELEEKLASNDN---SKDSVMDKISEAQDSILPLRLQFNEFIQTMANI------------EEMNNKSPQEKFLLI-RS 72 (379)
T ss_pred cHHHHHHHHhcCCc---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh------------hcccccCHHHHHHHH-HH
Confidence 46788888887776 444455666666666666666665522222222 111111112222222 25
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 192 KAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 192 Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
|+-+|.+.|-.+-.++..|+=+|+.|.
T Consensus 73 KlleL~~~lQ~lS~df~~LqPLF~Ti~ 99 (379)
T PF11593_consen 73 KLLELYNKLQELSSDFQKLQPLFDTIP 99 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHhhhH
Confidence 788999999999999999999999887
No 483
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=20.17 E-value=6.8e+02 Score=22.95 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 022306 136 QVNAVHLKLDELKRLAAEKDSLIK 159 (299)
Q Consensus 136 em~a~~akvDELr~~laeKe~lik 159 (299)
+++.|...|...+..+..=+....
T Consensus 110 q~~~L~~~l~~a~~nl~~a~~~a~ 133 (188)
T PF05335_consen 110 QLETLKAALKAAQANLANAEQVAE 133 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 484
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=20.11 E-value=2.5e+02 Score=28.03 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=39.2
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHH----hhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 162 QLQLSDAKIKLADKQAALEKSQWEAMT----VSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 162 q~QLsdaki~LadKqAaLEKlewE~~~----sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
|..|+..+.-|.++|..++.|++++.. +..+...+|..|++.+.-+..|...+
T Consensus 282 qq~l~~~~~al~~~q~~~~~L~~~a~~~fp~~~~~l~~i~~~Ln~~e~~l~~l~all 338 (406)
T PF04906_consen 282 QQRLTSSQRALSNMQSQVQGLLREAVPLFPTAQEPLLAIQEDLNSTERSLHQLTALL 338 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 456899999999999999999998764 33567777777776666555555444
No 485
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=20.10 E-value=7.2e+02 Score=23.21 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=44.9
Q ss_pred HHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCcccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhhhcCCH
Q 022306 195 KLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDIDDLDDVEMQRMEEAREAYITAVAMAKEKQDE 274 (299)
Q Consensus 195 ~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~~d~l~~~d~~~~~e~~kmE~aR~aY~aAvaaAKenp~e 274 (299)
+..-|.+.|..+..-|...|...+...-...-.+ .|+.+.. ...+.-+...-+..+.+= +.-+==+.+-.
T Consensus 120 ~~~~e~e~~~~q~~~~~~rl~~~~~~ql~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~ 189 (212)
T COG3599 120 KIAQELEDLKRQAQVERQRLRSDIEAQLASAKQE-------DWDEILR-STVDEVEAANEEAERLAD--AAQADADRLRD 189 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch-------hHHHHHh-hhhHHHHHHHHHHhhccc--ccccchhhhhh
Confidence 5667788888888888888886664322222111 1222222 222222222222222111 11111123336
Q ss_pred HHHHHHHHHHHhhhhhHhhc
Q 022306 275 ESMATAARARLHLQSFVFRN 294 (299)
Q Consensus 275 Esl~~aAeaR~~Lq~fvl~~ 294 (299)
+++..+..-...|+.+|=.+
T Consensus 190 e~~~~~~~~l~e~e~~~s~t 209 (212)
T COG3599 190 ECDIYVDTKLAELETRLSGT 209 (212)
T ss_pred hhHHHHHHHHHHHHHHHhhh
Confidence 78888888888888877443
Done!