Query 022306
Match_columns 299
No_of_seqs 25 out of 27
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 03:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 96.8 0.16 5.6E-06 41.2 17.1 8 109-116 11-18 (284)
2 3oja_B Anopheles plasmodium-re 96.6 0.069 2.4E-06 50.8 15.6 111 104-214 456-581 (597)
3 2fxo_A Myosin heavy chain, car 95.9 0.55 1.9E-05 38.3 16.1 108 101-208 10-121 (129)
4 2dfs_A Myosin-5A; myosin-V, in 95.7 0.059 2E-06 57.4 11.6 109 106-218 923-1043(1080)
5 3vkg_A Dynein heavy chain, cyt 95.6 0.21 7.3E-06 58.8 16.3 107 109-218 1932-2055(3245)
6 3na7_A HP0958; flagellar bioge 95.0 1.6 5.4E-05 38.7 16.6 116 105-220 47-187 (256)
7 3tnu_B Keratin, type II cytosk 94.8 0.69 2.4E-05 37.5 12.7 54 163-216 75-128 (129)
8 3tnu_A Keratin, type I cytoske 94.5 0.37 1.3E-05 39.3 10.4 55 162-216 76-130 (131)
9 1i84_S Smooth muscle myosin he 94.2 0.071 2.4E-06 56.6 6.9 17 105-121 858-874 (1184)
10 1i84_S Smooth muscle myosin he 93.9 0.29 9.9E-06 52.0 11.0 14 105-118 865-878 (1184)
11 3o0z_A RHO-associated protein 93.6 2.8 9.5E-05 36.7 14.7 81 135-215 69-153 (168)
12 2dfs_A Myosin-5A; myosin-V, in 92.8 1.6 5.6E-05 46.6 14.5 46 103-148 959-1004(1080)
13 4h22_A Leucine-rich repeat fli 92.7 0.25 8.5E-06 40.4 6.3 54 106-159 25-89 (103)
14 3qh9_A Liprin-beta-2; coiled-c 91.7 1.7 5.8E-05 34.2 9.7 64 124-187 15-78 (81)
15 3na7_A HP0958; flagellar bioge 91.7 6.7 0.00023 34.6 15.1 25 136-160 47-71 (256)
16 3nmd_A CGMP dependent protein 91.6 0.54 1.8E-05 36.2 6.7 45 113-167 21-65 (72)
17 2v4h_A NF-kappa-B essential mo 91.3 2.3 8E-05 35.1 10.6 37 112-158 25-61 (110)
18 3tnu_B Keratin, type II cytosk 91.1 2.5 8.5E-05 34.2 10.7 101 101-214 4-105 (129)
19 3oja_B Anopheles plasmodium-re 90.7 6 0.0002 37.5 14.5 112 105-219 450-579 (597)
20 3hnw_A Uncharacterized protein 90.0 3 0.0001 34.8 10.4 99 104-202 28-135 (138)
21 4gkw_A Spindle assembly abnorm 89.5 5.3 0.00018 34.5 11.7 60 103-162 59-118 (167)
22 3hnw_A Uncharacterized protein 89.3 4.7 0.00016 33.6 11.1 64 103-169 67-130 (138)
23 1ic2_A Tropomyosin alpha chain 89.2 3.9 0.00013 30.8 9.7 75 138-219 2-76 (81)
24 2k48_A Nucleoprotein; viral pr 89.1 1.1 3.8E-05 36.8 7.0 50 105-154 43-101 (107)
25 3u1c_A Tropomyosin alpha-1 cha 89.1 7 0.00024 30.7 13.0 38 161-198 63-100 (101)
26 3o0z_A RHO-associated protein 88.7 12 0.00039 32.8 17.2 101 106-209 8-108 (168)
27 3vkg_A Dynein heavy chain, cyt 88.6 6.1 0.00021 47.1 15.0 117 102-218 1932-2083(3245)
28 2e7s_A RAB guanine nucleotide 87.4 1.3 4.5E-05 37.5 6.5 34 139-172 100-133 (135)
29 3mq9_A Bone marrow stromal ant 87.0 19 0.00066 33.4 15.0 34 183-216 435-468 (471)
30 3a7p_A Autophagy protein 16; c 86.8 4.4 0.00015 35.0 9.6 60 127-186 67-126 (152)
31 1gk4_A Vimentin; intermediate 86.7 8.8 0.0003 29.1 11.1 54 163-216 26-79 (84)
32 2ic6_A Nucleocapsid protein; h 86.0 1.8 6E-05 33.9 6.1 50 105-154 13-71 (78)
33 4fi5_A Nucleoprotein; structur 85.7 2 6.8E-05 35.6 6.6 54 102-155 27-89 (113)
34 1x8y_A Lamin A/C; structural p 83.4 6.6 0.00022 30.1 8.3 53 164-216 29-81 (86)
35 3mov_A Lamin-B1; LMNB1, B-type 83.3 4.1 0.00014 32.1 7.3 79 135-216 12-90 (95)
36 2b9c_A Striated-muscle alpha t 82.8 20 0.00069 30.1 13.7 110 106-218 19-128 (147)
37 3ol1_A Vimentin; structural ge 82.6 17 0.00059 29.2 12.0 65 99-173 15-79 (119)
38 3u59_A Tropomyosin beta chain; 82.2 16 0.00054 28.4 12.2 53 122-174 17-69 (101)
39 2ic9_A Nucleocapsid protein; h 82.2 3.5 0.00012 33.3 6.5 52 104-155 12-72 (96)
40 2p22_C Protein SRN2; endosome, 81.7 26 0.0009 30.6 15.5 88 131-218 75-171 (192)
41 2v4h_A NF-kappa-B essential mo 80.9 14 0.00049 30.4 9.8 53 99-151 19-71 (110)
42 3ol1_A Vimentin; structural ge 80.1 21 0.00073 28.6 14.0 51 136-186 21-71 (119)
43 3u59_A Tropomyosin beta chain; 79.6 20 0.00067 27.9 12.4 87 105-198 10-100 (101)
44 2pms_C Pneumococcal surface pr 78.8 5.9 0.0002 33.2 7.0 51 137-187 63-120 (125)
45 2pms_C Pneumococcal surface pr 78.7 5.2 0.00018 33.5 6.7 37 168-208 49-85 (125)
46 3jsv_C NF-kappa-B essential mo 77.5 18 0.00062 29.0 9.2 37 112-158 3-39 (94)
47 3i00_A HIP-I, huntingtin-inter 76.3 25 0.00086 28.8 10.1 52 99-150 9-62 (120)
48 3tnu_A Keratin, type I cytoske 76.3 19 0.00064 29.2 9.2 103 100-215 5-108 (131)
49 2e7s_A RAB guanine nucleotide 75.7 5.9 0.0002 33.6 6.2 31 187-217 99-129 (135)
50 3ghg_A Fibrinogen alpha chain; 70.3 35 0.0012 34.7 11.3 93 102-202 62-156 (562)
51 3qh9_A Liprin-beta-2; coiled-c 69.8 27 0.00091 27.5 8.2 56 101-166 23-78 (81)
52 3nmd_A CGMP dependent protein 67.1 17 0.00057 28.0 6.4 46 172-217 21-66 (72)
53 1gk6_A Vimentin; intermediate 67.0 20 0.0007 25.7 6.6 52 165-216 2-53 (59)
54 2v71_A Nuclear distribution pr 67.0 67 0.0023 28.3 12.7 29 190-218 87-115 (189)
55 3u1c_A Tropomyosin alpha-1 cha 66.5 44 0.0015 26.1 13.6 81 121-215 16-96 (101)
56 1t2k_D Cyclic-AMP-dependent tr 65.8 16 0.00056 26.0 5.9 40 175-214 20-59 (61)
57 3ghg_A Fibrinogen alpha chain; 64.5 32 0.0011 35.1 9.6 47 164-210 103-150 (562)
58 1fxk_C Protein (prefoldin); ar 64.3 51 0.0017 26.0 10.2 32 102-133 13-44 (133)
59 2ocy_A RAB guanine nucleotide 64.3 69 0.0023 27.5 13.4 31 187-217 111-141 (154)
60 1m1j_C Fibrinogen gamma chain; 63.8 1.1E+02 0.0037 29.6 14.6 100 111-220 31-134 (409)
61 1joc_A EEA1, early endosomal a 63.1 32 0.0011 27.7 7.9 34 120-153 3-36 (125)
62 2wt7_A Proto-oncogene protein 62.3 20 0.00069 25.8 5.9 41 175-215 21-61 (63)
63 1zxa_A CGMP-dependent protein 62.0 8.4 0.00029 29.1 3.9 22 111-132 11-32 (67)
64 3mq9_A Bone marrow stromal ant 61.3 1E+02 0.0035 28.5 14.8 27 177-203 443-469 (471)
65 1m1j_B Fibrinogen beta chain; 60.3 1.4E+02 0.0047 29.6 14.8 31 137-167 123-153 (464)
66 2v71_A Nuclear distribution pr 60.0 91 0.0031 27.5 15.3 55 164-218 50-108 (189)
67 1m1j_C Fibrinogen gamma chain; 57.3 1.2E+02 0.004 29.5 11.9 32 102-133 36-67 (409)
68 3ghg_C Fibrinogen gamma chain; 56.9 1.4E+02 0.0049 29.0 12.5 36 189-224 103-138 (411)
69 2v66_B Nuclear distribution pr 56.8 57 0.002 26.6 8.3 60 103-162 41-111 (111)
70 4etp_A Kinesin-like protein KA 56.7 22 0.00074 33.9 6.7 26 106-131 5-30 (403)
71 4dk0_A Putative MACA; alpha-ha 56.0 16 0.00055 32.4 5.4 19 163-181 115-133 (369)
72 3fpp_A Macrolide-specific effl 54.6 39 0.0013 29.7 7.6 22 162-183 113-134 (341)
73 2eqb_B RAB guanine nucleotide 53.6 45 0.0015 26.8 7.1 83 105-204 6-96 (97)
74 4emc_A Monopolin complex subun 52.5 28 0.00097 31.0 6.3 32 141-172 26-57 (190)
75 1ci6_A Transcription factor AT 51.8 40 0.0014 24.4 6.0 41 176-216 22-62 (63)
76 1l8d_A DNA double-strand break 51.5 78 0.0027 24.1 12.1 26 190-215 77-102 (112)
77 2efr_A General control protein 50.8 1.2E+02 0.004 25.9 16.7 101 111-218 42-146 (155)
78 2lw1_A ABC transporter ATP-bin 50.6 55 0.0019 24.7 6.9 50 131-181 25-74 (89)
79 2zvf_A Alanyl-tRNA synthetase; 50.0 35 0.0012 27.6 6.1 50 105-154 8-58 (171)
80 3jsv_C NF-kappa-B essential mo 49.3 89 0.0031 25.0 8.1 76 143-218 3-88 (94)
81 4dk0_A Putative MACA; alpha-ha 49.0 59 0.002 28.7 7.9 16 105-120 71-86 (369)
82 1ic2_A Tropomyosin alpha chain 47.8 84 0.0029 23.4 9.1 57 107-166 16-72 (81)
83 3lay_A Zinc resistance-associa 47.2 65 0.0022 27.8 7.6 45 109-153 83-131 (175)
84 2ocy_A RAB guanine nucleotide 46.4 1.4E+02 0.0048 25.6 16.2 53 166-218 97-149 (154)
85 2xdj_A Uncharacterized protein 45.9 50 0.0017 25.5 6.0 27 192-218 28-54 (83)
86 1jnm_A Proto-oncogene C-JUN; B 43.8 23 0.00078 25.3 3.6 37 177-213 22-58 (62)
87 4etp_A Kinesin-like protein KA 43.6 52 0.0018 31.2 7.0 48 135-182 3-50 (403)
88 2xv5_A Lamin-A/C; structural p 43.6 89 0.003 23.6 7.0 15 202-216 44-58 (74)
89 3bas_A Myosin heavy chain, str 42.7 1.1E+02 0.0037 23.3 10.9 31 101-131 11-41 (89)
90 2nrj_A HBL B protein; enteroto 42.2 2E+02 0.007 26.6 10.7 70 98-167 220-289 (346)
91 2lw1_A ABC transporter ATP-bin 41.8 69 0.0024 24.1 6.2 56 101-156 19-77 (89)
92 1m1j_B Fibrinogen beta chain; 41.2 2.7E+02 0.0094 27.4 14.5 37 141-177 120-156 (464)
93 2oqq_A Transcription factor HY 41.0 71 0.0024 22.4 5.5 39 177-215 3-41 (42)
94 1gmj_A ATPase inhibitor; coile 40.7 72 0.0025 25.1 6.2 37 109-151 38-74 (84)
95 3swk_A Vimentin; cytoskeleton, 40.5 1.2E+02 0.0041 23.1 10.3 58 106-173 2-59 (86)
96 1jcd_A Major outer membrane li 40.3 1E+02 0.0034 22.1 6.9 24 130-153 6-29 (52)
97 2zqm_A Prefoldin beta subunit 39.1 1.2E+02 0.0042 22.8 10.7 27 182-208 82-108 (117)
98 1fxk_C Protein (prefoldin); ar 38.9 42 0.0014 26.5 4.8 43 175-217 86-128 (133)
99 3efg_A Protein SLYX homolog; x 37.4 69 0.0023 24.3 5.5 26 193-218 37-62 (78)
100 1l8d_A DNA double-strand break 37.4 1.3E+02 0.0046 22.7 9.3 13 135-147 31-43 (112)
101 4emc_A Monopolin complex subun 37.3 1.8E+02 0.0062 25.9 9.0 72 147-218 11-82 (190)
102 3oja_A Leucine-rich immune mol 36.8 2.6E+02 0.0088 25.9 12.5 45 171-215 422-466 (487)
103 1x8y_A Lamin A/C; structural p 36.3 91 0.0031 23.6 6.1 26 185-210 29-54 (86)
104 3edu_A Beta-I spectrin, spectr 36.2 1.8E+02 0.0061 23.8 8.8 103 94-203 71-173 (218)
105 1go4_E MAD1 (mitotic arrest de 36.1 1.5E+02 0.005 23.9 7.5 17 102-118 10-26 (100)
106 2f1m_A Acriflavine resistance 35.4 73 0.0025 27.1 6.1 21 162-182 97-117 (277)
107 1deq_A Fibrinogen (alpha chain 34.9 3.3E+02 0.011 26.6 11.5 92 98-194 61-167 (390)
108 3swk_A Vimentin; cytoskeleton, 34.5 1.5E+02 0.0052 22.5 10.2 73 136-208 1-80 (86)
109 1ci6_A Transcription factor AT 34.4 96 0.0033 22.3 5.7 41 101-151 20-60 (63)
110 2c5k_T Syntaxin TLG1, T-snare 33.7 1.2E+02 0.004 23.7 6.5 35 110-144 16-59 (95)
111 2zqm_A Prefoldin beta subunit 33.3 1.6E+02 0.0053 22.3 9.6 45 174-218 67-111 (117)
112 2eqb_B RAB guanine nucleotide 33.3 1.9E+02 0.0064 23.2 12.8 49 138-186 8-56 (97)
113 3htk_A Structural maintenance 33.1 1.2E+02 0.0041 20.9 6.5 25 137-161 7-31 (60)
114 1lwu_C Fibrinogen gamma chain; 32.7 1.1E+02 0.0037 28.8 7.2 43 107-152 8-50 (323)
115 3ni0_A Bone marrow stromal ant 32.2 2E+02 0.0069 23.3 8.1 18 159-176 21-38 (99)
116 2efr_A General control protein 32.0 2.4E+02 0.0081 24.0 15.8 65 107-174 73-137 (155)
117 4dyl_A Tyrosine-protein kinase 32.0 3.1E+02 0.011 25.4 10.6 32 105-136 310-341 (406)
118 4ani_A Protein GRPE; chaperone 31.7 1.1E+02 0.0038 27.2 6.8 50 104-163 59-109 (213)
119 1ses_A Seryl-tRNA synthetase; 30.8 1.2E+02 0.0042 28.8 7.4 28 131-158 67-94 (421)
120 1jcd_A Major outer membrane li 30.0 75 0.0026 22.8 4.4 30 179-208 6-35 (52)
121 3q0x_A Centriole protein; cent 29.8 1.4E+02 0.0048 26.9 7.2 25 129-153 186-210 (228)
122 1avy_A Fibritin, gpwac M; bact 28.7 1.8E+02 0.0061 22.4 6.5 50 179-237 10-59 (74)
123 1zxa_A CGMP-dependent protein 28.0 60 0.002 24.5 3.7 26 141-166 24-49 (67)
124 1fxk_A Prefoldin; archaeal pro 27.8 1.9E+02 0.0064 21.5 10.2 23 184-206 79-101 (107)
125 2l5g_B Putative uncharacterize 27.3 91 0.0031 21.8 4.3 18 105-122 17-34 (42)
126 4h22_A Leucine-rich repeat fli 27.3 2.5E+02 0.0085 22.8 8.9 22 190-211 57-78 (103)
127 2yy0_A C-MYC-binding protein; 27.1 97 0.0033 21.9 4.5 17 104-120 19-35 (53)
128 2yy0_A C-MYC-binding protein; 27.1 74 0.0025 22.6 3.9 15 135-149 33-47 (53)
129 3oja_A Leucine-rich immune mol 26.9 3.8E+02 0.013 24.8 11.9 14 253-266 464-477 (487)
130 1lwu_B Fibrinogen beta chain; 25.8 63 0.0021 30.3 4.3 12 109-120 7-18 (323)
131 4egx_A Kinesin-like protein KI 25.8 1E+02 0.0035 26.2 5.3 14 146-159 9-22 (184)
132 3m9b_A Proteasome-associated A 25.5 55 0.0019 30.1 3.8 37 182-218 59-95 (251)
133 2efl_A Formin-binding protein 25.3 3.1E+02 0.011 23.3 16.9 18 254-271 188-205 (305)
134 2p22_A Suppressor protein STP2 24.9 3.4E+02 0.012 23.5 9.7 22 194-215 66-87 (174)
135 3swy_A Cyclic nucleotide-gated 24.9 82 0.0028 22.1 3.7 26 190-215 4-29 (46)
136 3ghg_B Fibrinogen beta chain; 24.3 5.4E+02 0.018 25.6 13.9 31 137-167 118-148 (461)
137 1joc_A EEA1, early endosomal a 24.0 2.2E+02 0.0074 22.8 6.7 18 104-121 18-35 (125)
138 3r6n_A Desmoplakin; spectrin r 23.6 5E+02 0.017 25.0 12.9 109 105-228 10-127 (450)
139 3qne_A Seryl-tRNA synthetase, 23.3 1.7E+02 0.0057 29.0 7.0 24 126-149 45-68 (485)
140 2a01_A Apolipoprotein A-I; fou 23.1 1.7E+02 0.0057 25.6 6.3 28 192-219 210-238 (243)
141 2e2a_A Protein (enzyme IIA); h 23.0 87 0.003 25.0 4.1 32 256-287 19-50 (105)
142 2b5u_A Colicin E3; high resolu 23.0 6.1E+02 0.021 25.8 14.8 23 163-185 395-417 (551)
143 4ghu_A TNF receptor-associated 23.0 1.2E+02 0.0042 25.6 5.3 16 141-156 6-21 (198)
144 3m48_A General control protein 22.7 75 0.0026 21.2 3.0 26 190-215 6-31 (33)
145 1uix_A RHO-associated kinase; 22.7 2.6E+02 0.0088 21.3 9.3 35 167-201 32-67 (71)
146 1wle_A Seryl-tRNA synthetase; 22.1 4.9E+02 0.017 25.6 10.0 20 130-149 86-105 (501)
147 2efl_A Formin-binding protein 22.1 3.6E+02 0.012 22.8 14.7 30 135-164 130-159 (305)
148 2zdi_C Prefoldin subunit alpha 22.0 2.6E+02 0.009 22.5 6.9 26 105-130 24-52 (151)
149 3oa7_A Head morphogenesis prot 22.0 1.4E+02 0.0049 26.9 5.6 80 175-254 28-114 (206)
150 1wcr_A PTS system, N, N'-diace 21.9 98 0.0033 24.6 4.2 32 256-287 17-48 (103)
151 3kqg_A Langerin, C-type lectin 21.7 1.2E+02 0.0042 24.0 4.8 12 109-120 4-15 (182)
152 2yfa_A MCPS, methyl-accepting 21.7 3.4E+02 0.012 22.3 14.7 56 101-157 53-108 (258)
153 3aon_A V-type sodium ATPase su 21.3 1.2E+02 0.0041 26.4 5.0 32 167-198 148-179 (217)
154 1lwu_C Fibrinogen gamma chain; 21.3 2.3E+02 0.0078 26.6 7.2 31 139-169 9-39 (323)
155 1vf6_A PALS-1, PALS1-associate 21.2 2E+02 0.0069 22.6 5.7 40 113-152 9-58 (83)
156 2no2_A HIP-I, huntingtin-inter 21.2 3.1E+02 0.011 21.7 13.6 35 172-206 49-83 (107)
157 1x79_B RAB GTPase binding effe 21.1 3.4E+02 0.012 22.1 12.9 62 142-206 45-106 (112)
158 3okq_A BUD site selection prot 21.1 3.8E+02 0.013 22.7 13.0 50 132-181 25-79 (141)
159 3mq7_A Bone marrow stromal ant 21.0 3.6E+02 0.012 22.4 12.5 35 176-210 70-104 (121)
160 2l5g_B Putative uncharacterize 21.0 99 0.0034 21.6 3.5 17 133-149 21-37 (42)
161 3c3f_A Alpha/beta peptide with 20.9 1.1E+02 0.0037 20.6 3.5 26 190-215 7-32 (34)
162 3swf_A CGMP-gated cation chann 20.9 86 0.0029 24.1 3.5 29 187-215 3-31 (74)
163 2dq0_A Seryl-tRNA synthetase; 20.7 4.8E+02 0.017 25.0 9.5 36 183-218 75-110 (455)
164 2b5u_A Colicin E3; high resolu 20.4 6.9E+02 0.024 25.4 14.8 58 125-182 318-375 (551)
165 1kd8_A GABH AIV, GCN4 acid bas 20.2 1.1E+02 0.0039 20.7 3.5 26 190-215 7-32 (36)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.77 E-value=0.16 Score=41.19 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 022306 109 LREQVEDL 116 (299)
Q Consensus 109 LreQVeeL 116 (299)
|.-+++.+
T Consensus 11 l~~~~~~~ 18 (284)
T 1c1g_A 11 LKLDKENA 18 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHhHHHH
Confidence 33333333
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.55 E-value=0.069 Score=50.78 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQV---------------NAVHLKLDELKRLAAEKDSLIKSTQLQLSDA 168 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em---------------~a~~akvDELr~~laeKe~likStq~QLsda 168 (299)
+|+..++..|..|+.++...+..+...+.-..+. ..+...+..++...+.++..++..+.+..+.
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence 4666677777777777776666666665554322 4455566666666666666666666666555
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 169 KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 169 ki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
+..+...+.-++.+|..+..-.+++..|+.++..+..+|..|+..+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555566666777777777777777777777777776665544
No 3
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.91 E-value=0.55 Score=38.26 Aligned_cols=108 Identities=15% Similarity=0.230 Sum_probs=78.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH
Q 022306 101 KEIEELVALREQVEDLQRKMFEK----DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ 176 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~EK----DelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKq 176 (299)
..-+|+..+.+++..|+.+|..- .++=.....+..++|.++.+|..-+-.+++.+-.+..++.+-.+-..+|.+.+
T Consensus 10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~ 89 (129)
T 2fxo_A 10 EREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999998888633 33444455667999999999999999999999999888888777778888888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 177 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 177 AaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
.-|+..+-..-.-..+-.+|+.+++.+..+|.
T Consensus 90 ~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 90 KRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887665544444444445555555544443
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.74 E-value=0.059 Score=57.42 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLE--------SSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA 177 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae--------~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqA 177 (299)
-..|..+|++||.+|.++++-...+. ....++..++..+++|+....|+.. +..++.....++++...
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~----~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN----ATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34566666666666665544433222 2245555565556665555444432 12222222223333333
Q ss_pred HHHHHHHHHHHhhhHH----HHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 178 ALEKSQWEAMTVSRKA----EKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 178 aLEKlewE~~~sn~Kv----e~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.++++.-|.+.-..+. ++||+.+++|+.|...|.++++.|.
T Consensus 999 ~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222222222 3445555555555555555555444
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.60 E-value=0.21 Score=58.85 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh----
Q 022306 109 LREQVEDLQRKMFEKDELLKSL-----------ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA---- 173 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSa-----------e~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~La---- 173 (299)
-.+||++||++|.+|.-.|+.. .....+....++.+++.+.+++++..-|...+ .++...|+
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k---~~~e~dL~~A~P 2008 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQK---VKAYADLEKAEP 2008 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCC
Confidence 4567777777777766555433 33333444444555555555555554444322 23333443
Q ss_pred --hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 174 --DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 174 --dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
=|+++|+++|-++.....+....|+.|..++..|..|...|+..+
T Consensus 2009 a~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A 2009 TGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777778888877777777777777554
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.97 E-value=1.6 Score=38.69 Aligned_cols=116 Identities=12% Similarity=0.205 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHh
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSK-------------SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIK 171 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~-------------~em~a~~akvDELr~~laeKe~likStq~QLsdaki~ 171 (299)
.+..++.+++++++.+...+.-+..+...+ -++.++...|+.+++....-+.-|.-..-++...+..
T Consensus 47 ~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 47 AILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555544444444444332 3344444455544444444443333333333333333
Q ss_pred hhhHHHHHHHHHHHHH----HhhhHHHHHHHHHh-------hhhhhHH-HHHHHHhhhhhc
Q 022306 172 LADKQAALEKSQWEAM----TVSRKAEKLQEEVE-------SMQGEMS-SFMQIFEGLIKN 220 (299)
Q Consensus 172 LadKqAaLEKlewE~~----~sn~Kve~Lq~dl~-------~m~~eIs-slm~~fe~lt~n 220 (299)
+++.++.++.++-++. .....+..++.++. .+...|. .|...|+.|.++
T Consensus 127 l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 127 QEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRW 187 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3333333333322221 11222333333333 3333333 677788888853
No 7
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.78 E-value=0.69 Score=37.50 Aligned_cols=54 Identities=28% Similarity=0.463 Sum_probs=38.8
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 163 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
.+|.+++..++++.+.|.++.++...-..--..|=+==-.++.||.+.+.+++|
T Consensus 75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkLLEg 128 (129)
T 3tnu_B 75 LALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLEG 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHCc
Confidence 467777777888888888888777665555555544444688999999888764
No 8
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.46 E-value=0.37 Score=39.29 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=39.2
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 162 QLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 162 q~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
..+|.+++..++++.+.|.++.++...-..--..|=+==-.++.||++.+.+|++
T Consensus 76 ~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLLEG 130 (131)
T 3tnu_A 76 CMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLEG 130 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHCc
Confidence 3466777777788888888887777665555555544444688999999988874
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.18 E-value=0.071 Score=56.59 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022306 105 ELVALREQVEDLQRKMF 121 (299)
Q Consensus 105 El~~LreQVeeLqkKL~ 121 (299)
|+..|.+++++|+.+|.
T Consensus 858 El~~L~~eL~el~~~L~ 874 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQ 874 (1184)
T ss_dssp HCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.93 E-value=0.29 Score=51.98 Aligned_cols=14 Identities=21% Similarity=0.302 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQR 118 (299)
Q Consensus 105 El~~LreQVeeLqk 118 (299)
++..|+++++.++.
T Consensus 865 eL~el~~~L~~le~ 878 (1184)
T 1i84_S 865 ELQRTKERQQKAEA 878 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.60 E-value=2.8 Score=36.66 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh----hhHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQ----GEMSSF 210 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~----~eIssl 210 (299)
.++..+++.+++=|+...--.-+|.-+|..+...+..|......+.+++-|-..=..|+..|+-+-++++ |++-++
T Consensus 69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKal 148 (168)
T 3o0z_A 69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5555666666666655566666666677777777777777777777777777777777777777777777 555566
Q ss_pred HHHHh
Q 022306 211 MQIFE 215 (299)
Q Consensus 211 m~~fe 215 (299)
+.-++
T Consensus 149 Q~~~e 153 (168)
T 3o0z_A 149 QQRLE 153 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.83 E-value=1.6 Score=46.56 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELK 148 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr 148 (299)
-.|+..|+.++++|+....|+..+-..+.++..++..+..++..+.
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444334444444444443333333
No 13
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=92.65 E-value=0.25 Score=40.38 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 022306 106 LVALREQVEDLQRKMFEKDELL-----------KSLESSKSQVNAVHLKLDELKRLAAEKDSLIK 159 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelL-----------kSae~~~~em~a~~akvDELr~~laeKe~lik 159 (299)
-.+|.=||+-|+-+|-|.++.+ +-++.++-....++.++++|+.+|.++|.||.
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665555544 44666678889999999999999999999985
No 14
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=91.71 E-value=1.7 Score=34.22 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHH
Q 022306 124 DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAM 187 (299)
Q Consensus 124 DelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~ 187 (299)
|+-.+-+|.++.+||.+.-+|.||-.+-.-=|.=++||..+|+--+..|+.|.|.++.|+-++.
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4455677788888999998888888777777777888888888888888888888888776653
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.65 E-value=6.7 Score=34.63 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Q 022306 136 QVNAVHLKLDELKRLAAEKDSLIKS 160 (299)
Q Consensus 136 em~a~~akvDELr~~laeKe~likS 160 (299)
++..++..++.+++++...+.-|..
T Consensus 47 ~~~~~~~~l~d~~~~~~~~e~~i~~ 71 (256)
T 3na7_A 47 AILNLEEEKLALKLQVSKNEQTLQD 71 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444433333333333
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.56 E-value=0.54 Score=36.22 Aligned_cols=45 Identities=33% Similarity=0.336 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 022306 113 VEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 167 (299)
Q Consensus 113 VeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsd 167 (299)
|-+||.-|-+|++= +..-...|++|.++|.+||..|+-+|++|..
T Consensus 21 i~eLq~~L~~K~eE----------Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEE----------LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666653 3444556778888888888888888888864
No 17
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.26 E-value=2.3 Score=35.05 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 022306 112 QVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLI 158 (299)
Q Consensus 112 QVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~li 158 (299)
+|++|+.+|-.-+++|.. -+..+|+|+..++.++.-+
T Consensus 25 ei~~L~~~L~~AEeaL~~----------Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA----------KQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 555666666655555544 3445566666666655533
No 18
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.12 E-value=2.5 Score=34.20 Aligned_cols=101 Identities=14% Similarity=0.252 Sum_probs=37.0
Q ss_pred hcHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHH
Q 022306 101 KEIEELVA-LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAAL 179 (299)
Q Consensus 101 k~~eEl~~-LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaL 179 (299)
+++.|+-. -+.++++|+...---.+.|++ .+.+++.++-.|..|.-++..=.+...++..+|.+++.
T Consensus 4 knr~eaE~~y~~K~eel~~~~~~~~~~l~~---~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~--------- 71 (129)
T 3tnu_B 4 RSRTEAESWYQTKYEELQQTAGRHGDDLRN---TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ--------- 71 (129)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------
Confidence 44444433 356677777655444444433 34444444444444444443333333344444444332
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 180 EKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 180 EKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
..+.++..-+.++..|+.+|..++.++.....-+
T Consensus 72 -~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 72 -RGELALKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2334555566677777777777777776544333
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.71 E-value=6 Score=37.54 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHhHHhh
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA------------------EKDSLIKSTQLQLS 166 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~la------------------eKe~likStq~QLs 166 (299)
...+|+++++++..++..=.+- .......++....++++.+..+. .=....+....++.
T Consensus 450 ~~e~l~~e~~~~~~~i~~l~~~---~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 526 (597)
T 3oja_B 450 GNEQLEAEVNELRAEVQQLTNE---QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQ 526 (597)
T ss_dssp ----CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4556777877777655433332 33344556666666666655544 11122223333444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhh
Q 022306 167 DAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIK 219 (299)
Q Consensus 167 daki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~ 219 (299)
..+....+++..+++++.|+..-.++.+..+..+..+..|+...+..+..+-+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777788888888888888888888888888888877666665553
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.00 E-value=3 Score=34.78 Aligned_cols=99 Identities=15% Similarity=0.085 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 022306 104 EELVALREQVEDLQRKMFEK--DE-------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 174 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EK--De-------lLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~Lad 174 (299)
+-|..+=.-|++-=+.+... -. +.=.|=+.-.++-.++..+++|..++.+++.=|.++-.+|-.+++++..
T Consensus 28 e~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~ 107 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAES 107 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555533 22 2222333347777778888888888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVES 202 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~ 202 (299)
-...+++|+.++-.-..++-+|+.++..
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777766666666666543
No 21
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=89.51 E-value=5.3 Score=34.51 Aligned_cols=60 Identities=32% Similarity=0.355 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ 162 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq 162 (299)
-.||..||...+-+|+++---|.+|+--.+-.++-+.=--|+-||.--|-|||+.+.|+-
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT 118 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLT 118 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHH
Confidence 358899999999999999888999987777777777777888999999999999998854
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=89.34 E-value=4.7 Score=33.59 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK 169 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdak 169 (299)
-+|+..++++++.|...+-+++ +.+..++.++..++-+++++++++.+-..=+..+|-++....
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~---kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKD---KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999998887764 555667778888888888888888776666666666655443
No 23
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.24 E-value=3.9 Score=30.78 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 138 NAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 138 ~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
.++..||-.|+.+. ..++..+..+...|-+.....++++-|+..-++|..-|++||+..+..+......|+..
T Consensus 2 ~~ikkKm~~lk~e~-------d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 2 DAIKKKMQMLKLDK-------ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555443 23455666667777777778899999999999999999999999999999888888866
Q ss_pred hh
Q 022306 218 IK 219 (299)
Q Consensus 218 t~ 219 (299)
.+
T Consensus 75 ek 76 (81)
T 1ic2_A 75 DK 76 (81)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 24
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=89.12 E-value=1.1 Score=36.81 Aligned_cols=50 Identities=24% Similarity=0.379 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022306 105 ELVALREQVEDLQRKMFEKDEL---------LKSLESSKSQVNAVHLKLDELKRLAAEK 154 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDel---------LkSae~~~~em~a~~akvDELr~~laeK 154 (299)
|+-...-|+---++||-+=... ..++.+....+++++.||.+|++++|+.
T Consensus 43 Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 43 NITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666543322 3455566788888889999998888875
No 25
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.10 E-value=7 Score=30.73 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=23.6
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 022306 161 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQE 198 (299)
Q Consensus 161 tq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~ 198 (299)
++.+|.+++.+|-+..-.+...|.|+..-|+|+--|++
T Consensus 63 ~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEE 100 (101)
T 3u1c_A 63 VLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45566666666666666666666666666666655543
No 26
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.74 E-value=12 Score=32.78 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 185 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE 185 (299)
+..|+-|+++++.||.-=-+.-.-+.-..+++....+.++..-++|.+|=..+.. +.-.-...++..|+.|+.=-+.
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~---~k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN---SKSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777776664333333333333456666666666666666665443333 3333345566667776654444
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHH
Q 022306 186 AMTVSRKAEKLQEEVESMQGEMSS 209 (299)
Q Consensus 186 ~~~sn~Kve~Lq~dl~~m~~eIss 209 (299)
--..+.-+.+||+.+.+++.|+..
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~ 108 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKH 108 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444334444444444444443
No 27
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.56 E-value=6.1 Score=47.06 Aligned_cols=117 Identities=14% Similarity=0.246 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHH----HH-------HHHHHHHHHHHHHHHHHHH------------------------
Q 022306 102 EIEELVALREQVEDLQRKMFEKDE----LL-------KSLESSKSQVNAVHLKLDE------------------------ 146 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDe----lL-------kSae~~~~em~a~~akvDE------------------------ 146 (299)
-.+.+..|++++.++|.+|.+|.. +| ..|+.-+..+.+..+++.+
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~P 2011 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGP 2011 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 456777888888888888777632 21 2333333333333333222
Q ss_pred HHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 147 LKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 147 Lr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+|..|++=+.-+..++.+|..++.+|++.++.|++|+-+.-....+.+.|+.+++..+.-+..=..++.+|+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 233444444455566667777777777777777777777766677777777777777766665555555555
No 28
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.37 E-value=1.3 Score=37.54 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 022306 139 AVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL 172 (299)
Q Consensus 139 a~~akvDELr~~laeKe~likStq~QLsdaki~L 172 (299)
.+..+++.|+.++.||+.+|.+.|.||.+-|.-+
T Consensus 100 ~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 100 AIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888899999999999999999988877543
No 29
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.96 E-value=19 Score=33.37 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=17.9
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 183 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 183 ewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
+-++-.-.+|+++|++++..+..+|.-+...++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 435 DAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456666666666655555555554443
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.84 E-value=4.4 Score=35.02 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 127 LKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 127 LkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
+..+..+..+...+..+|..|...+.+|..++..+|.++.--++.+.-.+..+.+||-|-
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888889999999999999999999999999999999999999988888888888764
No 31
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=86.68 E-value=8.8 Score=29.14 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=35.9
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 163 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
.++.+.+..++...+.|.++..+.-.-..--..|=+==-.++.||++.+.++++
T Consensus 26 ~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 26 VEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 356667777777777777777666544444333333334578999999999885
No 32
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=85.95 E-value=1.8 Score=33.86 Aligned_cols=50 Identities=24% Similarity=0.354 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022306 105 ELVALREQVEDLQRKMFEKDEL---------LKSLESSKSQVNAVHLKLDELKRLAAEK 154 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDel---------LkSae~~~~em~a~~akvDELr~~laeK 154 (299)
|+-...-|+---++||-+=... ..++......+++++.||.+|++++|+.
T Consensus 13 e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 13 NITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555433222 3345555688888888888888888875
No 33
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=85.74 E-value=2 Score=35.64 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDEL---------LKSLESSKSQVNAVHLKLDELKRLAAEKD 155 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDel---------LkSae~~~~em~a~~akvDELr~~laeKe 155 (299)
--+|+....-|+---++||-+=... ..++......+++++.||+||++++|+.=
T Consensus 27 Lq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 27 LQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777654433 34666677899999999999999998864
No 34
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=83.43 E-value=6.6 Score=30.10 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=26.3
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
++.+.+..+....+.|.++..+.-.-.+--..|=+==-.++.||++.+.+|++
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 33344444444444444444443332222222222223567899999998885
No 35
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=83.34 E-value=4.1 Score=32.12 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
++++.++++..-|..+++|=+.- ...++.+.+..+++..+.|.++..+.-.-..-...|-.---.++.||.+.+.++
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~~---~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELEDL---LAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp ------CCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544442 223555556666666666666666555544444444444446788999999888
Q ss_pred hh
Q 022306 215 EG 216 (299)
Q Consensus 215 e~ 216 (299)
++
T Consensus 89 EG 90 (95)
T 3mov_A 89 EG 90 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 36
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=82.82 E-value=20 Score=30.09 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 185 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE 185 (299)
|.....++++..+..-|-+..++.+++.. ..-..+|+.|-.+|.+=....+.+---..++--+|+-...-|++.+--
T Consensus 19 l~~a~~kLeeaek~adE~eR~~k~lE~r~---~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeR 95 (147)
T 2b9c_A 19 LATALQKLEEAEKAADESERGMKVIESRA---QKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 95 (147)
T ss_dssp TTHHHHHHHHHHHHHHHHTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888877777777766553 344556677777777666777777777888888999999999999999
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 186 AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 186 ~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
+-....|+-.|+++|..+...+-+|....++-+
T Consensus 96 ae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas 128 (147)
T 2b9c_A 96 AELSEGKCAELEEELKTVTNNLKSLEDKVEELL 128 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 999999999999999999999998876555433
No 37
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.62 E-value=17 Score=29.17 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=39.9
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 022306 99 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA 173 (299)
Q Consensus 99 ~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~La 173 (299)
....-.+|..||.||+++.. ||-. +..++.-++..+|.+|..+.+--.+-.++...+...+..+-
T Consensus 15 ~~~ye~~I~~LR~qid~~~~---e~a~-------l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTN---DKAR-------VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 33444567777777777654 3333 34556666666777776666665666666666666665554
No 38
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.22 E-value=16 Score=28.43 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 022306 122 EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 174 (299)
Q Consensus 122 EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~Lad 174 (299)
|||.++.-++....++..+......+-.++..=-.=|+.++.+|-.+...|.+
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666665555555544444444443333344444444444444433
No 39
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=82.19 E-value=3.5 Score=33.32 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 022306 104 EELVALREQVEDLQRKMFEKDEL---------LKSLESSKSQVNAVHLKLDELKRLAAEKD 155 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDel---------LkSae~~~~em~a~~akvDELr~~laeKe 155 (299)
+|+-...-|+---++||-+=... ..++.+....+++++.||.+|++++|+.=
T Consensus 12 ~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 12 DNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555433222 33455556888888888888888888753
No 40
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=81.68 E-value=26 Score=30.61 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh-------hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 022306 131 ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL-------ADKQAALEKSQWEAMTVSRKAEKLQEEVESM 203 (299)
Q Consensus 131 e~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~L-------adKqAaLEKlewE~~~sn~Kve~Lq~dl~~m 203 (299)
.+..+++..+...++++|.++-++=.-++++..+.+.....+ =.-.+.+++|+-.+..++..++.|......-
T Consensus 75 ~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~ 154 (192)
T 2p22_C 75 RDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSI 154 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444445556666666666666666666666666665444333 1235788999999999999999999999764
Q ss_pred --hhhHHHHHHHHhhhh
Q 022306 204 --QGEMSSFMQIFEGLI 218 (299)
Q Consensus 204 --~~eIsslm~~fe~lt 218 (299)
.-+|..|...|..+.
T Consensus 155 ~~e~dv~~Fl~~y~~~R 171 (192)
T 2p22_C 155 DSADDLDQFIKNYLDIR 171 (192)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHH
Confidence 457778888887654
No 41
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.87 E-value=14 Score=30.41 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=41.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 99 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 151 (299)
Q Consensus 99 ~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~l 151 (299)
+..++.|+..|..++....+.|.+|...+.-++....+..+...+|.=|+.|+
T Consensus 19 ~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv 71 (110)
T 2v4h_A 19 SHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQA 71 (110)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466689999999999999999998888888887777666666766666664
No 42
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.12 E-value=21 Score=28.62 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 136 QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 136 em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
+|+.+..+||.+...=+.=+.-|..++..+-+-+.+..+-.+.-..+|-++
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di 71 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTL 71 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444444443333333344444444444444444433333344333
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.60 E-value=20 Score=27.88 Aligned_cols=87 Identities=14% Similarity=0.171 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLES----SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 180 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~----~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLE 180 (299)
=+.+|+-+.+....+.-.-+.-++.++. ..++|.+++.++-.|..++- -++.+|.+++.+|-...-...
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld-------~~~e~l~~a~~kLe~~ek~~~ 82 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVE-------KYSESVKEAQEKLEQAEKKAT 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444444444444433 35677778888777666654 366677788888877777778
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 022306 181 KSQWEAMTVSRKAEKLQE 198 (299)
Q Consensus 181 KlewE~~~sn~Kve~Lq~ 198 (299)
..|.||..-|+|+--|++
T Consensus 83 ~AE~evasLnRriqllEE 100 (101)
T 3u59_A 83 DAEAEVASLNRRIQLVEE 100 (101)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 888888888887765543
No 44
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=78.76 E-value=5.9 Score=33.22 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhH-H------hhHHHHhhhhHHHHHHHHHHHHH
Q 022306 137 VNAVHLKLDELKRLAAEKDSLIKSTQL-Q------LSDAKIKLADKQAALEKSQWEAM 187 (299)
Q Consensus 137 m~a~~akvDELr~~laeKe~likStq~-Q------Lsdaki~LadKqAaLEKlewE~~ 187 (299)
+..++.+||+|...+|+=+--|.-.+. . +...+-.|+.|+|-|+|.|-++.
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld 120 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLK 120 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777765555543221 1 45568889999999999886653
No 45
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=78.73 E-value=5.2 Score=33.54 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=22.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 168 AKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 168 aki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
++-.|.-++|-|++|+ .=+.|++.|+..+..++.+|+
T Consensus 49 ~qsele~k~aeLe~le----eL~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 49 LQSKLDAKKAKLSKLE----ELSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHH
Confidence 4455778888888882 244555555555555555554
No 46
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=77.49 E-value=18 Score=29.02 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 022306 112 QVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLI 158 (299)
Q Consensus 112 QVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~li 158 (299)
||+.|+.+|-.-+++|.+ -+..||+|+..++.++..+
T Consensus 3 ~~~~L~~~L~~aEeaL~~----------kq~~id~lke~~~q~~~~~ 39 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVA----------KQELIDKLKEEAEQHKIVM 39 (94)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHH
Confidence 677788887777777765 3445666666666555444
No 47
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=76.31 E-value=25 Score=28.80 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=37.5
Q ss_pred hhhcHH-HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 99 SEKEIE-ELVALREQVEDLQRKMFE-KDELLKSLESSKSQVNAVHLKLDELKRL 150 (299)
Q Consensus 99 ~~k~~e-El~~LreQVeeLqkKL~E-KDelLkSae~~~~em~a~~akvDELr~~ 150 (299)
...+|+ .+.+|+-.|+.|+..|-- |-|.=+-+.++.++++.+.+.+++-+++
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 566788888888776532 6666677778889999999999988765
No 48
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.31 E-value=19 Score=29.15 Aligned_cols=103 Identities=18% Similarity=0.257 Sum_probs=35.1
Q ss_pred hhcHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 022306 100 EKEIEELVA-LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAA 178 (299)
Q Consensus 100 ~k~~eEl~~-LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAa 178 (299)
++++.|+-. -+.++++|+...---.+.|++ .+.+++.++-.|..|.-++..=.....++..+|.+++.
T Consensus 5 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~---~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~-------- 73 (131)
T 3tnu_A 5 EKNRKDAEEWFFTKTEELNREVATNSELVQS---GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG-------- 73 (131)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------
Confidence 445555433 356777777765544444443 33444444444444444432222223334444444333
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 179 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 179 LEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
..+.++..-+.++..|+.+|..++.++.....-++
T Consensus 74 --~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 74 --RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445556667777788888877777775443333
No 49
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.73 E-value=5.9 Score=33.55 Aligned_cols=31 Identities=10% Similarity=0.195 Sum_probs=14.2
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 187 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 187 ~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
.....|++.|+..+...+.=|.++..++..|
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777666666666666544
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.30 E-value=35 Score=34.70 Aligned_cols=93 Identities=9% Similarity=0.125 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hhHHHHHHHhHHhhHHHHhhhhHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESS-KSQVNAVHLKLDELKRLAA-EKDSLIKSTQLQLSDAKIKLADKQAAL 179 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~-~~em~a~~akvDELr~~la-eKe~likStq~QLsdaki~LadKqAaL 179 (299)
.+.-|..|+.||++|++.=.+=+...+.+-.. ..++...+ ..|....||+ |=+.-|.+++..+.+....|+-.|..|
T Consensus 62 ltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnL 140 (562)
T 3ghg_A 62 FTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557778888888877665555544433222 11111111 3333333333 333344555555555555556666666
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhh
Q 022306 180 EKSQWEAMTVSRKAEKLQEEVES 202 (299)
Q Consensus 180 EKlewE~~~sn~Kve~Lq~dl~~ 202 (299)
+.+- .|.-+|+.|++.
T Consensus 141 edq~-------~kIQRLEvDIdi 156 (562)
T 3ghg_A 141 RAQL-------VDMKRLEVDIDI 156 (562)
T ss_dssp HHHH-------HHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHH
Confidence 6543 244566777664
No 51
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=69.82 E-value=27 Score=27.47 Aligned_cols=56 Identities=27% Similarity=0.321 Sum_probs=40.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 022306 101 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLs 166 (299)
.-..|+..||-.|++|--.=. +..-.+.+..+.|-.|+++|..||.=|+.+|.||.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErl----------QyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERN----------QYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 345567777777777654322 23445556668888899999999999999999985
No 52
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.10 E-value=17 Score=27.95 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 172 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 172 LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
+-+.|.+|++-.-|+-.....+..|+..|+..+.+|..|+..++++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777666777777777777777777777777777777665
No 53
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=67.05 E-value=20 Score=25.68 Aligned_cols=52 Identities=12% Similarity=0.177 Sum_probs=32.9
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 165 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 165 Lsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
|.+++..++...+.|.++..+.-.-..--..|=+==-.++.||++.+.+|++
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEg 53 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEG 53 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3455566666666666666665544444444433334578999999999984
No 54
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=66.98 E-value=67 Score=28.31 Aligned_cols=29 Identities=7% Similarity=0.167 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 190 SRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
++-+..||.+++.++....++...+..|-
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666555
No 55
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.55 E-value=44 Score=26.08 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 022306 121 FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEV 200 (299)
Q Consensus 121 ~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl 200 (299)
.+||.++.-++....++..+......+ +.-|.|+|..+.. .+.-|++++-.+...+.|.+.-....
T Consensus 16 ~e~e~a~drae~~e~~~k~~e~~~~~~-------E~Ei~sL~kk~~~-------lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 16 LDKENALDRAEQAEADKKAAEERSKQL-------EDDIVQLEKQLRV-------TEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777666666555554444 4444444433322 22233344444444444444444445
Q ss_pred hhhhhhHHHHHHHHh
Q 022306 201 ESMQGEMSSFMQIFE 215 (299)
Q Consensus 201 ~~m~~eIsslm~~fe 215 (299)
+..+++|.+|..-++
T Consensus 82 ~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 82 AKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554444
No 56
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.83 E-value=16 Score=25.95 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 214 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~f 214 (299)
|..-.+.||-++..=...-..|+.++..++.|+.+|..+|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777777667777777788888888877777665
No 57
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.54 E-value=32 Score=35.05 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=22.2
Q ss_pred HhhHHHHhhh-hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 164 QLSDAKIKLA-DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 164 QLsdaki~La-dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
++.+....+. +.+--++-|+.+|-.-=....-||.-|..+..+|.-|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444 4444444455554444444455555555555555433
No 58
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=64.35 E-value=51 Score=25.97 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
-+.++..|+.++..|+.++.|=+.++.+++.+
T Consensus 13 l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 13 YQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566666666666666666666666666554
No 59
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.34 E-value=69 Score=27.47 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=17.8
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 187 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 187 ~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
.....|++.|+..+...+.=|.++..++..|
T Consensus 111 ~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 111 YAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666555555555555544
No 60
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=63.78 E-value=1.1e+02 Score=29.62 Aligned_cols=100 Identities=9% Similarity=0.095 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH----HHhhhhHHHHHHHHHHHH
Q 022306 111 EQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA----KIKLADKQAALEKSQWEA 186 (299)
Q Consensus 111 eQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsda----ki~LadKqAaLEKlewE~ 186 (299)
.|--.+.+.|.+=+.+|+.++++.+++..+-..|...-.+ . |.+--+. -....+|.--+.++|--+
T Consensus 31 k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~---~-------Q~~~~d~~e~~tq~skkml~~~~~~e~~~ 100 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS---E-------KQTLPQSIEQLTQKSKKIIEEIIRYENTI 100 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS---S-------TTCCSSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c-------cCCCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 3334455555555666666666666666555555444111 1 1111110 011122222333344445
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhc
Q 022306 187 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 220 (299)
Q Consensus 187 ~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n 220 (299)
..-...+..||..+.+++..|..|...+..|..+
T Consensus 101 ~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 101 LAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5555667777777777777777776666665543
No 61
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=63.06 E-value=32 Score=27.67 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=27.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022306 120 MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 120 L~EKDelLkSae~~~~em~a~~akvDELr~~lae 153 (299)
.-||+.+|+..-....++..|++++.+|++.+.+
T Consensus 3 ~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888888888888888853
No 62
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=62.30 E-value=20 Score=25.78 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
|+.-++.||-++..-...-..|+.++..++.|+..|..+|.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777788888888888887777664
No 63
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=61.99 E-value=8.4 Score=29.13 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 022306 111 EQVEDLQRKMFEKDELLKSLES 132 (299)
Q Consensus 111 eQVeeLqkKL~EKDelLkSae~ 132 (299)
.++++|++.+..||+..+-+|.
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~ 32 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEK 32 (67)
T ss_dssp ------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHH
Confidence 4667777777777776554443
No 64
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.30 E-value=1e+02 Score=28.48 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 022306 177 AALEKSQWEAMTVSRKAEKLQEEVESM 203 (299)
Q Consensus 177 AaLEKlewE~~~sn~Kve~Lq~dl~~m 203 (299)
+-++.+|-|+.+-|++.+.+..++..+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777888888888777777776554
No 65
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=60.32 E-value=1.4e+02 Score=29.58 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 022306 137 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 167 (299)
Q Consensus 137 m~a~~akvDELr~~laeKe~likStq~QLsd 167 (299)
|++++..+.+...++-+.+..|+-...+|..
T Consensus 123 i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~ 153 (464)
T 1m1j_B 123 VNMIDNKLVKTQKQRKDNDIILSEYNTEMEL 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 4555555666555555555555554444443
No 66
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=59.99 E-value=91 Score=27.46 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=30.5
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHH----HhhhhhhHHHHHHHHhhhh
Q 022306 164 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEE----VESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 164 QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~d----l~~m~~eIsslm~~fe~lt 218 (299)
+|..+...+.+.+..+.+|..|+-.-..|....+.+ ++.++.+|+.|+..-+.+.
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555566655555 5666666666665555444
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.32 E-value=1.2e+02 Score=29.45 Aligned_cols=32 Identities=9% Similarity=0.140 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQRKMFEKDELLKSLESS 133 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 133 (299)
...+|..|..-|.+|+.+-.+-..+++++..+
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677777777788877777777888777776
No 68
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.88 E-value=1.4e+02 Score=29.03 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCC
Q 022306 189 VSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTV 224 (299)
Q Consensus 189 sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~ 224 (299)
-+.-+..||.-+++....|..|+..+..|...-+.+
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~~ 138 (411)
T 3ghg_C 103 HDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEP 138 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555667777777777777777777776554443
No 69
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=56.79 E-value=57 Score=26.61 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022306 103 IEELVALREQVEDLQRKMFEKD----E-------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ 162 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKD----e-------lLkSae~~~~em~a~~akvDELr~~laeKe~likStq 162 (299)
..|+..|+..-+.|+++|.+=+ . ..-|++.+...+|.+....--|-.+|.||+.|...+|
T Consensus 41 q~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~~~Q 111 (111)
T 2v66_B 41 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQ 111 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3577888888888888776532 2 3345555567778888888888899999998876654
No 70
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.71 E-value=22 Score=33.86 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLE 131 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae 131 (299)
+..|.++|+.|++++.+.++-++.++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~ 30 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTE 30 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444433333
No 71
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=56.03 E-value=16 Score=32.45 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=8.1
Q ss_pred HHhhHHHHhhhhHHHHHHH
Q 022306 163 LQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEK 181 (299)
.+|..++..+...++.++.
T Consensus 115 ~~~~~a~~~~~~a~a~~~~ 133 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMDV 133 (369)
T ss_dssp GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 72
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=54.56 E-value=39 Score=29.68 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=10.8
Q ss_pred hHHhhHHHHhhhhHHHHHHHHH
Q 022306 162 QLQLSDAKIKLADKQAALEKSQ 183 (299)
Q Consensus 162 q~QLsdaki~LadKqAaLEKle 183 (299)
+.++..++..+...++.++.++
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~~ 134 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTID 134 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555454444333
No 73
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.60 E-value=45 Score=26.79 Aligned_cols=83 Identities=17% Similarity=0.288 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh--------hHHHHhhhhHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL--------SDAKIKLADKQ 176 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QL--------sdaki~LadKq 176 (299)
++..|++++..|+.++...|.=+..+. ..+.+-+..-.+=+.-..-+..+| .+|..|.++-
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~----------~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a- 74 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLR----------EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA- 74 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 567788888888887777555444433 333333322222222333333333 2344443332
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 022306 177 AALEKSQWEAMTVSRKAEKLQEEVESMQ 204 (299)
Q Consensus 177 AaLEKlewE~~~sn~Kve~Lq~dl~~m~ 204 (299)
..+-.....|++.|+..|...+
T Consensus 75 ------r~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 75 ------RKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHhhcc
Confidence 3344455678888888876543
No 74
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=52.50 E-value=28 Score=30.98 Aligned_cols=32 Identities=19% Similarity=0.049 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 022306 141 HLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL 172 (299)
Q Consensus 141 ~akvDELr~~laeKe~likStq~QLsdaki~L 172 (299)
...+.-|..++.-|+.-|+++|.||..++...
T Consensus 26 ~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 26 VNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444444444444444444443333
No 75
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=51.78 E-value=40 Score=24.38 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhh
Q 022306 176 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 216 (299)
Q Consensus 176 qAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~ 216 (299)
..-.+.|+-++..=......|...++.++.||.+|..+|..
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666677777777788888888888888888877653
No 76
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.49 E-value=78 Score=24.08 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 190 SRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
..+...|...+..+..+|..|...+.
T Consensus 77 ~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 77 KNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 77
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=50.83 E-value=1.2e+02 Score=25.92 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 111 EQVEDLQRKMFEKDELLKSLESSK----SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 111 eQVeeLqkKL~EKDelLkSae~~~----~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
.+|-+|...|.-=+.-|+|++.+. ..+.....+|-.|...+-+=+ .--..|.-..+-.+..+.+||-++
T Consensus 42 ~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE-------~RAE~AERsv~kLEk~id~lEd~L 114 (155)
T 2efr_A 42 GKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE-------TRAEFAERSVTKLEKSIDDLEDEL 114 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666664 333344444444444443332 222344566677888899999999
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 187 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 187 ~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.....|...++.+|+..-.++.++..-|..|.
T Consensus 115 ~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 115 YAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999887776554
No 78
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=50.60 E-value=55 Score=24.69 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 131 ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 131 e~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEK 181 (299)
+.+..+|..+.++|.+|..++++=++|-.. ...+......|++.+..|+.
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp~~y~~d-~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADASFFSQP-HEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCC-HHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665555221 23344444455555555554
No 79
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=49.98 E-value=35 Score=27.61 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022306 105 ELVALREQVEDLQRKMFEK-DELLKSLESSKSQVNAVHLKLDELKRLAAEK 154 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EK-DelLkSae~~~~em~a~~akvDELr~~laeK 154 (299)
.+......+.++-..|--+ +++...++.+.+++..++.+++.|+.+++..
T Consensus 8 ~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 8 AVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777644 6888888888888888888888888887653
No 80
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=49.34 E-value=89 Score=25.02 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH-----HHHHHHhhh-----HHHHHHHHHhhhhhhHHHHHH
Q 022306 143 KLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS-----QWEAMTVSR-----KAEKLQEEVESMQGEMSSFMQ 212 (299)
Q Consensus 143 kvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl-----ewE~~~sn~-----Kve~Lq~dl~~m~~eIsslm~ 212 (299)
+||.|..+|..-+-.+.+.|.++.+-|...+.+.+.+|.+ |-+|=.+-= --|+|+++-..+..++..++.
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666666666666542 222222211 124566666666666666666
Q ss_pred HHhhhh
Q 022306 213 IFEGLI 218 (299)
Q Consensus 213 ~fe~lt 218 (299)
.+.+|.
T Consensus 83 q~~~L~ 88 (94)
T 3jsv_C 83 EFNKLK 88 (94)
T ss_dssp TTC---
T ss_pred HHHHHH
Confidence 666554
No 81
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=49.05 E-value=59 Score=28.74 Aligned_cols=16 Identities=13% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKM 120 (299)
Q Consensus 105 El~~LreQVeeLqkKL 120 (299)
++..++.++..++..|
T Consensus 71 ~l~~~~a~l~~~~a~l 86 (369)
T 4dk0_A 71 TLNTRKAALASYQAQL 86 (369)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555544444
No 82
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=47.84 E-value=84 Score=23.39 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLs 166 (299)
-...++++.++.+|-+.+.-+ ....++|.+++.+|-.|..++-.=+.-+..++..|.
T Consensus 16 d~a~~~~~~~e~~l~~~e~~~---~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEERS---KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444444322 222345555555555554444443333333333333
No 83
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=47.17 E-value=65 Score=27.76 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~~lae 153 (299)
.+.++.+|..+++.|..-|..+-.. .+.+.++..+|.+|+.++..
T Consensus 83 ~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 83 YYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888777765443 47788888888888877765
No 84
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.43 E-value=1.4e+02 Score=25.55 Aligned_cols=53 Identities=8% Similarity=0.123 Sum_probs=29.6
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 166 SDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 166 sdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.+|..|.++=...-..+|.-+..=.....+-+.-|++++.++..|-.+|+++.
T Consensus 97 eEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 97 DEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34666666655554445544444444444455555556666666666666654
No 85
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=45.91 E-value=50 Score=25.48 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 192 KAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 192 Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
.++.|+.||..++|+|-.+.+.++.+.
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455555555555555555555444
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.78 E-value=23 Score=25.31 Aligned_cols=37 Identities=8% Similarity=0.176 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 022306 177 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 213 (299)
Q Consensus 177 AaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~ 213 (299)
.-++.||-++..=...-..|..+++.++.|+..|..+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555444433
No 87
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.60 E-value=52 Score=31.25 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl 182 (299)
+++.++..+|.+|+++..+.+..|+.++.++.+.+.+|.+.+..--+|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888888888888888888877777766665555444333
No 88
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=43.56 E-value=89 Score=23.55 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHhh
Q 022306 202 SMQGEMSSFMQIFEG 216 (299)
Q Consensus 202 ~m~~eIsslm~~fe~ 216 (299)
.++.||++.+.+|++
T Consensus 44 ~Le~EIatYRkLLEG 58 (74)
T 2xv5_A 44 ALDMEIHAYRKLLEG 58 (74)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 467899999999984
No 89
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=42.73 E-value=1.1e+02 Score=23.28 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=21.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022306 101 KEIEELVALREQVEDLQRKMFEKDELLKSLE 131 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~EKDelLkSae 131 (299)
..-+|+..+.+++..|+.+|..-+...+.++
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele 41 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELE 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999998888864444444443
No 90
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=42.21 E-value=2e+02 Score=26.64 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=54.6
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 022306 98 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 167 (299)
Q Consensus 98 ~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsd 167 (299)
+.+.-+.++..++++|++|++++..+.-+...+......++.++..|+.-..-|-.=...-.++..++..
T Consensus 220 ~a~~a~k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~ 289 (346)
T 2nrj_A 220 IVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSG 289 (346)
T ss_dssp EEEEEGGGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567788899999999999988888889999999999999998888766666555556666666443
No 91
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=41.75 E-value=69 Score=24.14 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=39.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHH
Q 022306 101 KEIEELVALREQVEDLQRKMFEKDELLKSLES---SKSQVNAVHLKLDELKRLAAEKDS 156 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~EKDelLkSae~---~~~em~a~~akvDELr~~laeKe~ 156 (299)
+..-||..|-.+|+.|..++.+=+..|-.... --..+..+.+.++++..+|.+...
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557888888888888888777777765442 246777777788777777766543
No 92
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=41.18 E-value=2.7e+02 Score=27.44 Aligned_cols=37 Identities=8% Similarity=0.059 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH
Q 022306 141 HLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA 177 (299)
Q Consensus 141 ~akvDELr~~laeKe~likStq~QLsdaki~LadKqA 177 (299)
+.-|-.|+..+.+++.-+......+.+...+|...++
T Consensus 120 ~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~ 156 (464)
T 1m1j_B 120 YQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYN 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3334444455555554444444444444444443333
No 93
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=41.03 E-value=71 Score=22.37 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 177 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 177 AaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
|=|.-||-.++.-.++..+|++.++.++.|=..|++++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 446678888888899999999999999999888888764
No 94
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=40.69 E-value=72 Score=25.07 Aligned_cols=37 Identities=11% Similarity=0.274 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 109 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 151 (299)
Q Consensus 109 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~l 151 (299)
=+||+..|+++| +..+..-+.+|..++..|+..++.+
T Consensus 38 ekEqL~~LKkkl------~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 38 AKEQLAALKKHK------ENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665 3344444455555555555444443
No 95
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.53 E-value=1.2e+02 Score=23.12 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 022306 106 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA 173 (299)
Q Consensus 106 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~La 173 (299)
+..||.||+.|.. +|..+ ..++.-++..++.+|..+-+=-.+-.++...+..-+..+-
T Consensus 2 i~eLr~qi~~l~~---e~~~l-------~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 2 MRELRRQVDQLTN---DKARV-------EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp CHHHHHHHHHHHH---HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHh---hHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3455666665542 33332 3444445555555555555544555555555555554443
No 96
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=40.28 E-value=1e+02 Score=22.12 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022306 130 LESSKSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 130 ae~~~~em~a~~akvDELr~~lae 153 (299)
+.++.++|..|..+||.|...+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888888876653
No 97
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=39.13 E-value=1.2e+02 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=13.2
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
++-++..-.++.+.++..+..++..+-
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555554443
No 98
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.90 E-value=42 Score=26.47 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 217 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~l 217 (299)
..-|++-++.-+..-+...+.++.++..++.+|..+...++.+
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666667777778888888888887777776654
No 99
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.39 E-value=69 Score=24.27 Aligned_cols=26 Identities=0% Similarity=-0.106 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 193 AEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 193 ve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
|-..|.+++.|+.++..|...|..+.
T Consensus 37 v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 37 LADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444445555555444444
No 100
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.38 E-value=1.3e+02 Score=22.73 Aligned_cols=13 Identities=15% Similarity=0.498 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 022306 135 SQVNAVHLKLDEL 147 (299)
Q Consensus 135 ~em~a~~akvDEL 147 (299)
.++..+...+.++
T Consensus 31 ~~i~~l~~~l~~l 43 (112)
T 1l8d_A 31 NKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 101
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.28 E-value=1.8e+02 Score=25.85 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=34.7
Q ss_pred HHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 147 LKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 147 Lr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
++.++..-|.||..+++|...--.+|..|+--++.|+.++-.-+...-..+..++.-.-.|.-.--+|+-||
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LT 82 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLC 82 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHcc
Confidence 445666667777777777777776666666666666655544444444444444433333333333444444
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.85 E-value=2.6e+02 Score=25.90 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 171 KLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 171 ~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
+.++.|.-.+++..+........+.|.++=..++-+|..+...++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 334444444444444444444455555544444444444444433
No 103
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=36.34 E-value=91 Score=23.64 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=14.2
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 185 EAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 185 E~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
++..-+.++..|+.+|..++.++..-
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666543
No 104
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=36.18 E-value=1.8e+02 Score=23.84 Aligned_cols=103 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred hhhhhhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 022306 94 SRALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA 173 (299)
Q Consensus 94 s~~~~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~La 173 (299)
+..+....-++-+..|...-+.|.....++...|..+. ++..++..++++..-+.+|+..+ + .-+..-=-.+-
T Consensus 71 ~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~----~~~~F~~~~~e~~~Wl~ek~~~l-~--~~~g~dl~~v~ 143 (218)
T 3edu_A 71 AGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASY----DLHRYFYTGAEILGLIDEKHREL-P--EDVGLDASTAE 143 (218)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCC-C-------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhC-C--CccCCCHHHHH
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 022306 174 DKQAALEKSQWEAMTVSRKAEKLQEEVESM 203 (299)
Q Consensus 174 dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m 203 (299)
..+...+.+|.++.....+|..|+..-..|
T Consensus 144 ~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L 173 (218)
T 3edu_A 144 SFHRVHTAFERELHLLGVQVQQFQDVATRL 173 (218)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 105
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.11 E-value=1.5e+02 Score=23.86 Aligned_cols=17 Identities=41% Similarity=0.458 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHHHHHHH
Q 022306 102 EIEELVALREQVEDLQR 118 (299)
Q Consensus 102 ~~eEl~~LreQVeeLqk 118 (299)
..|++..|+..|+.|.+
T Consensus 10 ~~e~~~~lr~ei~~Le~ 26 (100)
T 1go4_E 10 SREEADTLRLKVEELEG 26 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34577777777777764
No 106
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=35.42 E-value=73 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=9.4
Q ss_pred hHHhhHHHHhhhhHHHHHHHH
Q 022306 162 QLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 162 q~QLsdaki~LadKqAaLEKl 182 (299)
+.+|.+++..+...++.|+.+
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a 117 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAA 117 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 107
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=34.87 E-value=3.3e+02 Score=26.59 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 022306 98 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSK---------------SQVNAVHLKLDELKRLAAEKDSLIKSTQ 162 (299)
Q Consensus 98 ~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~---------------~em~a~~akvDELr~~laeKe~likStq 162 (299)
.+...+--+..|++.|+++++.-.+=....+.+-..- +-...|..+|..|++-|.+.=-.|+.+|
T Consensus 61 ~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHH
Q 022306 163 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAE 194 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEKlewE~~~sn~Kve 194 (299)
.-|.+..+++--..-++ ++..+.||+.
T Consensus 141 ~~l~~q~~kiqRLE~~I-----d~c~~~C~~s 167 (390)
T 1deq_A 141 KNVRDQLVDMKRLEVDI-----DIKIRSCKGS 167 (390)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhcccccc
No 108
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=34.55 E-value=1.5e+02 Score=22.54 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHH-------HHHHHHhhhhhhHH
Q 022306 136 QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAE-------KLQEEVESMQGEMS 208 (299)
Q Consensus 136 em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve-------~Lq~dl~~m~~eIs 208 (299)
||..++.+|+.+...=+.=+.-|..++..+.+-+.+.-+=.+.-..+|.++..--+=|. +|+..+.++..||.
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777766555555556666666666676666666666666666554433332 35555555555554
No 109
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.36 E-value=96 Score=22.31 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=20.5
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 101 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 151 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~l 151 (299)
+-+++...|..++++|..+-. .+..+++.+...+..|+..+
T Consensus 20 KKk~~~~~le~~~~~L~~~N~----------~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNE----------ALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666655432 23344444444455554443
No 110
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=33.73 E-value=1.2e+02 Score=23.67 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=16.0
Q ss_pred HHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHH
Q 022306 110 REQVEDLQRKM---------FEKDELLKSLESSKSQVNAVHLKL 144 (299)
Q Consensus 110 reQVeeLqkKL---------~EKDelLkSae~~~~em~a~~akv 144 (299)
++||..|+.-+ |-..++...++.+...+..|...|
T Consensus 16 ~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI 59 (95)
T 2c5k_T 16 KEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSI 59 (95)
T ss_dssp HHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544 333444444444444444444443
No 111
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.29 E-value=1.6e+02 Score=22.27 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 174 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 174 dKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
++.-+++.|+-..-.-...+++|+..+..++.++..+...+..+-
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777777777777777777766654
No 112
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.27 E-value=1.9e+02 Score=23.19 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 022306 138 NAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 186 (299)
Q Consensus 138 ~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~ 186 (299)
..+..+++.|..++++.+.=+.-++.+|.+.+....+-...+.+++-|+
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555544443
No 113
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=33.09 E-value=1.2e+02 Score=20.88 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q 022306 137 VNAVHLKLDELKRLAAEKDSLIKST 161 (299)
Q Consensus 137 m~a~~akvDELr~~laeKe~likSt 161 (299)
.+.++..++++...+.++.+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKA 31 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333
No 114
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.66 E-value=1.1e+02 Score=28.82 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~la 152 (299)
..|+++|..|...|...+.-++.++ +.+..++.+|++|+.+|.
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~---~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELS---EMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4456666666666655555444443 333344555665555544
No 115
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=32.19 E-value=2e+02 Score=23.25 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=11.7
Q ss_pred HHHhHHhhHHHHhhhhHH
Q 022306 159 KSTQLQLSDAKIKLADKQ 176 (299)
Q Consensus 159 kStq~QLsdaki~LadKq 176 (299)
+-+|.||..|+-.|.+..
T Consensus 21 ~lLq~qLT~Aq~~l~~~e 38 (99)
T 3ni0_A 21 HLLQRQLTRTQDSLLQAE 38 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345677777777666555
No 116
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=32.03 E-value=2.4e+02 Score=24.01 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 022306 107 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 174 (299)
Q Consensus 107 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~Lad 174 (299)
..+.+||..|+.+|-|=+.=-.-|+ -.+.-++..||.|--.+..-..-.+.++..|..+-..|..
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AE---Rsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAE---RSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555544333222222 2233344444444444333333333444444433333333
No 117
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=32.03 E-value=3.1e+02 Score=25.43 Aligned_cols=32 Identities=13% Similarity=0.348 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLESSKSQ 136 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae~~~~e 136 (299)
-|..+.++|.++++.+.-|...+..++..+..
T Consensus 310 ~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~ 341 (406)
T 4dyl_A 310 TLTSVTDELAVATEMVFRRQEMVTQLQQELRN 341 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888888887766665554433
No 118
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=31.73 E-value=1.1e+02 Score=27.21 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhH
Q 022306 104 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA-AEKDSLIKSTQL 163 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~l-aeKe~likStq~ 163 (299)
+|+..|..+|+.|+.++.+ +..+..-++|.++-+|+-. .|++.+.+....
T Consensus 59 ~e~~~l~~~l~~l~~e~~e----------l~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e 109 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSE----------MEHRYLRLYADFENFRRRTRQEMEAAEKYRAQ 109 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888877644 2233333445555554433 345555554443
No 119
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.76 E-value=1.2e+02 Score=28.79 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 022306 131 ESSKSQVNAVHLKLDELKRLAAEKDSLI 158 (299)
Q Consensus 131 e~~~~em~a~~akvDELr~~laeKe~li 158 (299)
+.++.++..+..+|.+|..++.+.+.-+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARL 94 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333
No 120
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=29.97 E-value=75 Score=22.78 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 022306 179 LEKSQWEAMTVSRKAEKLQEEVESMQGEMS 208 (299)
Q Consensus 179 LEKlewE~~~sn~Kve~Lq~dl~~m~~eIs 208 (299)
+.+|--.|=+=|.||..|+.|+..++.+|.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777777765
No 121
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.76 E-value=1.4e+02 Score=26.91 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 022306 129 SLESSKSQVNAVHLKLDELKRLAAE 153 (299)
Q Consensus 129 Sae~~~~em~a~~akvDELr~~lae 153 (299)
+++.+..|++...+.+.+.|+++|+
T Consensus 186 ~L~~~~~e~~s~~~~~~~~~~~~~~ 210 (228)
T 3q0x_A 186 DLSRTRDDRDSMVAQLAQCRQQLAQ 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666664
No 122
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=28.70 E-value=1.8e+02 Score=22.45 Aligned_cols=50 Identities=12% Similarity=0.274 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCCCCCCCcccc
Q 022306 179 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYS 237 (299)
Q Consensus 179 LEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~d~d~~p~~~ 237 (299)
+.-+|-.+|--.+.|..+...+.+++++|++|.. ++-.+..-.|..||..
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~---------ag~ip~AP~DG~~YVr 59 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQE---------AGYIPEAPRDGQAYVR 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCCCCCCCCSSCCEEE
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHHh---------cCCCCCCCCCCceeEE
Confidence 3445556666677778888888888888877754 2223323456777753
No 123
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.03 E-value=60 Score=24.45 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhHHhh
Q 022306 141 HLKLDELKRLAAEKDSLIKSTQLQLS 166 (299)
Q Consensus 141 ~akvDELr~~laeKe~likStq~QLs 166 (299)
...|++|...+.+||..|.-++.+|+
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 124
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.76 E-value=1.9e+02 Score=21.50 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=10.1
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh
Q 022306 184 WEAMTVSRKAEKLQEEVESMQGE 206 (299)
Q Consensus 184 wE~~~sn~Kve~Lq~dl~~m~~e 206 (299)
-++..-.++.+.++..+..++..
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 125
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.32 E-value=91 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 022306 105 ELVALREQVEDLQRKMFE 122 (299)
Q Consensus 105 El~~LreQVeeLqkKL~E 122 (299)
|+..-++||.+||+||-+
T Consensus 17 EI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 17 EITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666666666544
No 126
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=27.26 E-value=2.5e+02 Score=22.77 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHhhhhhhHHHHH
Q 022306 190 SRKAEKLQEEVESMQGEMSSFM 211 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm 211 (299)
++-++.+.-..+.+++++..+.
T Consensus 57 ~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 57 NKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444333
No 127
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.08 E-value=97 Score=21.95 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022306 104 EELVALREQVEDLQRKM 120 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL 120 (299)
.|+-+|+.++++||.|+
T Consensus 19 ~d~eaLk~E~~eLk~k~ 35 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKY 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 46667777777766553
No 128
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.06 E-value=74 Score=22.57 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKR 149 (299)
Q Consensus 135 ~em~a~~akvDELr~ 149 (299)
.+++++.++++||+.
T Consensus 33 ~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 33 EKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333334433
No 129
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.88 E-value=3.8e+02 Score=24.75 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 022306 253 RMEEAREAYITAVA 266 (299)
Q Consensus 253 kmE~aR~aY~aAva 266 (299)
+++.|+..|..|+.
T Consensus 464 ~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 464 ALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHhcccHHHHHHH
Confidence 45666666666653
No 130
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=25.82 E-value=63 Score=30.26 Aligned_cols=12 Identities=8% Similarity=0.382 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 022306 109 LREQVEDLQRKM 120 (299)
Q Consensus 109 LreQVeeLqkKL 120 (299)
++++||+....+
T Consensus 7 ~~~~le~~~~~i 18 (323)
T 1lwu_B 7 AQKEIENRYKEV 18 (323)
T ss_dssp CHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555544443
No 131
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=25.76 E-value=1e+02 Score=26.24 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=6.0
Q ss_pred HHHHHHHhhHHHHH
Q 022306 146 ELKRLAAEKDSLIK 159 (299)
Q Consensus 146 ELr~~laeKe~lik 159 (299)
|++.+|.+.|.+++
T Consensus 9 e~~e~L~~~e~l~~ 22 (184)
T 4egx_A 9 EAIERLKETEKIIA 22 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 132
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.48 E-value=55 Score=30.12 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=20.7
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 182 SQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 182 lewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
|++++-.-..|.+.|...+..++.||..|...++.|.
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444445555556666666666666666666554
No 133
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=25.35 E-value=3.1e+02 Score=23.25 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 022306 254 MEEAREAYITAVAMAKEK 271 (299)
Q Consensus 254 mE~aR~aY~aAvaaAKen 271 (299)
++.++..|..+|.++-..
T Consensus 188 ~~~a~~~Y~~~v~~~n~~ 205 (305)
T 2efl_A 188 AEDSKADYSSILQKFNHE 205 (305)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577889999999888554
No 134
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=24.94 E-value=3.4e+02 Score=23.50 Aligned_cols=22 Identities=5% Similarity=0.221 Sum_probs=11.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHh
Q 022306 194 EKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 194 e~Lq~dl~~m~~eIsslm~~fe 215 (299)
+.|+.++..++..|..+.....
T Consensus 66 ~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 66 QAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555333
No 135
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=24.87 E-value=82 Score=22.15 Aligned_cols=26 Identities=15% Similarity=0.432 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 190 SRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
..||++|+.-|+.|+.-+..|+.-|.
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ 29 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYN 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999988888887776
No 136
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=24.26 E-value=5.4e+02 Score=25.57 Aligned_cols=31 Identities=3% Similarity=0.136 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 022306 137 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 167 (299)
Q Consensus 137 m~a~~akvDELr~~laeKe~likStq~QLsd 167 (299)
|++++..+..-++++-+.|.+|+--...|.+
T Consensus 118 v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~ 148 (461)
T 3ghg_B 118 MYLLKDLWQKRQKQVKDNENVVNEYSSELEK 148 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHhccccCCCCcchhHHHHHHHHHHH
Confidence 3444444444455555556655554444444
No 137
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.00 E-value=2.2e+02 Score=22.78 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022306 104 EELVALREQVEDLQRKMF 121 (299)
Q Consensus 104 eEl~~LreQVeeLqkKL~ 121 (299)
.|+..|++++.+|+++|-
T Consensus 18 ~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 18 GEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 368888888888888873
No 138
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=23.62 E-value=5e+02 Score=25.00 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 022306 105 ELVALREQVEDLQRKMFEKDE---------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 175 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDe---------lLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadK 175 (299)
.+..+...|++++..|..-|. +|+.-..+..+|.+...+|+.|..+...+. .+...
T Consensus 10 ~v~dl~~Wl~E~~~~L~S~d~GkDL~sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a~~~~---------------~~~~L 74 (450)
T 3r6n_A 10 VTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKS---------------AIYQL 74 (450)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---------------HHHHH
T ss_pred cHHHHHHHHHHHHHhcCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH---------------HHHHH
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCCCC
Q 022306 176 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADD 228 (299)
Q Consensus 176 qAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~~~ 228 (299)
+...+.|.--+..+-.+.+.|+.=+..+.-+++|+...-.-+...+-++...+
T Consensus 75 ~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd~l~d 127 (450)
T 3r6n_A 75 EEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWSDKNTN 127 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcChhh
No 139
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.33 E-value=1.7e+02 Score=28.96 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 126 LLKSLESSKSQVNAVHLKLDELKR 149 (299)
Q Consensus 126 lLkSae~~~~em~a~~akvDELr~ 149 (299)
++..++.+.++.|++.++|-.+++
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556666777777777766654
No 140
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=23.05 E-value=1.7e+02 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhhHH-HHHHHHhhhhh
Q 022306 192 KAEKLQEEVESMQGEMS-SFMQIFEGLIK 219 (299)
Q Consensus 192 Kve~Lq~dl~~m~~eIs-slm~~fe~lt~ 219 (299)
.+++|+..|..+-.+|. .|+.+|+++.+
T Consensus 210 ~~e~lk~~l~p~~e~~~~~l~~~~e~~~~ 238 (243)
T 2a01_A 210 ALEDLRQGLLPVLESFKVSFLSALEEYTK 238 (243)
T ss_dssp HHHHSSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554 55666666654
No 141
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.03 E-value=87 Score=24.98 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhh
Q 022306 256 EAREAYITAVAMAKEKQDEESMATAARARLHL 287 (299)
Q Consensus 256 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 287 (299)
.||..|+.|+.+||+.--++.=....+|+..|
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l 50 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGSCI 50 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 68999999999999997777666666666544
No 142
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=23.02 E-value=6.1e+02 Score=25.82 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=12.9
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHH
Q 022306 163 LQLSDAKIKLADKQAALEKSQWE 185 (299)
Q Consensus 163 ~QLsdaki~LadKqAaLEKlewE 185 (299)
+-...|++.|.++||++-++--|
T Consensus 395 ~~~~~~~~dv~~~~a~~d~~~~~ 417 (551)
T 2b5u_A 395 LKAQRAQTDVNNKQAAFDAAAKE 417 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHHHHHHHhhc
Confidence 34445566666666666665443
No 143
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=23.00 E-value=1.2e+02 Score=25.59 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhHH
Q 022306 141 HLKLDELKRLAAEKDS 156 (299)
Q Consensus 141 ~akvDELr~~laeKe~ 156 (299)
..+++.|.++++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~ 21 (198)
T 4ghu_A 6 ESQLSRHDQMLSVHDI 21 (198)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 144
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=22.71 E-value=75 Score=21.25 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 190 SRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
..||+.|-.+-+.++.||..|..++.
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 47999999999999999998887653
No 145
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.66 E-value=2.6e+02 Score=21.29 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=23.8
Q ss_pred HHHHhhhhHHHHHHH-HHHHHHHhhhHHHHHHHHHh
Q 022306 167 DAKIKLADKQAALEK-SQWEAMTVSRKAEKLQEEVE 201 (299)
Q Consensus 167 daki~LadKqAaLEK-lewE~~~sn~Kve~Lq~dl~ 201 (299)
+..|..+...+.++| |.-|.+..-..|++|-+=|.
T Consensus 32 eee~~~~~~k~~lek~L~~E~~LK~QAVNKLAEIMN 67 (71)
T 1uix_A 32 DEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMN 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555556566666666 77888888888888765443
No 146
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.12 E-value=4.9e+02 Score=25.56 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022306 130 LESSKSQVNAVHLKLDELKR 149 (299)
Q Consensus 130 ae~~~~em~a~~akvDELr~ 149 (299)
++.+.++-|++.++|-.+++
T Consensus 86 ~~~l~~~rn~~sk~i~~~~~ 105 (501)
T 1wle_A 86 IRSLEEEKEAVTEAVRALVV 105 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44555555666666655443
No 147
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=22.07 E-value=3.6e+02 Score=22.84 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 022306 135 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQ 164 (299)
Q Consensus 135 ~em~a~~akvDELr~~laeKe~likStq~Q 164 (299)
.++......++-.++.+-.+-.-+..++..
T Consensus 130 k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~ 159 (305)
T 2efl_A 130 QHIETCWKQLESSKRRFERDCKEADRAQQY 159 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555444444444444433
No 148
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.04 E-value=2.6e+02 Score=22.48 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHH---HHHHhhhHHHHHHH
Q 022306 105 ELVALREQVEDL---QRKMFEKDELLKSL 130 (299)
Q Consensus 105 El~~LreQVeeL---qkKL~EKDelLkSa 130 (299)
++..|..++..| +.++.|=..+|..+
T Consensus 24 ~~~~l~~~~~~L~~a~~~~~e~~~~l~~l 52 (151)
T 2zdi_C 24 QAQILAQNLELLNLAKAEVQTVRETLENL 52 (151)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444 44444444444433
No 149
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=21.97 E-value=1.4e+02 Score=26.87 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhcCCCCCC-------CCCCCCCcccccccCCCCCCC
Q 022306 175 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNA-------DDDYDIKPYYSDYLSDIDDLD 247 (299)
Q Consensus 175 KqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt~n~S~~~~-------~~d~d~~p~~~d~l~~~d~~~ 247 (299)
.--+|.+|+-|...-+.--++|+.-.+.++.|.+.|..-|.+|..|-|.... +-+-+---|..=+|.-+|.+|
T Consensus 28 ~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks~p~i~ke~Y~~L~Vd~Vd~ld 107 (206)
T 3oa7_A 28 RTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQSRPDISAEECNFLMVEQIDSAN 107 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHCTTCCHHHHHHHTGGGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhcCcccCHHHHhhcCcccccccc
Confidence 3457888899999988899999999999999999999999999977766544 113333345555566666666
Q ss_pred hHHHHHH
Q 022306 248 DVEMQRM 254 (299)
Q Consensus 248 ~~e~~km 254 (299)
=.++|-+
T Consensus 108 LVqLQNi 114 (206)
T 3oa7_A 108 LTTLQNT 114 (206)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 150
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=21.94 E-value=98 Score=24.61 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhh
Q 022306 256 EAREAYITAVAMAKEKQDEESMATAARARLHL 287 (299)
Q Consensus 256 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 287 (299)
.||..|+.|+.+||+.--++.=....+|+..|
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l 48 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSRMAL 48 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 68999999999999997777666666666544
No 151
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=21.73 E-value=1.2e+02 Score=23.98 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=1.5
Q ss_pred HHHHHHHHHHHH
Q 022306 109 LREQVEDLQRKM 120 (299)
Q Consensus 109 LreQVeeLqkKL 120 (299)
|..+|+.|++.|
T Consensus 4 l~~~~~~l~~~~ 15 (182)
T 3kqg_A 4 LNAQIPELKSDL 15 (182)
T ss_dssp ---------CHH
T ss_pred hhhhHHHHHHHH
Confidence 455566665544
No 152
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=21.65 E-value=3.4e+02 Score=22.34 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=37.3
Q ss_pred hcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 022306 101 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSL 157 (299)
Q Consensus 101 k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~l 157 (299)
...+-+..+...++.++...|. .+-...+......+......++++......++..
T Consensus 53 ~~~~~l~~~~~~l~~~~~~~~~-~~~~~~l~~i~~~~~~Y~~~f~~~~~~~~~~~~~ 108 (258)
T 2yfa_A 53 NTLAKLDAFSKQQAYLATTFKS-PENVKLLGELGDTISAYKLSLNKMRQGYDATRAA 108 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677788888888887776 4445555666666666666666666666555544
No 153
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=21.31 E-value=1.2e+02 Score=26.40 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=28.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 022306 167 DAKIKLADKQAALEKSQWEAMTVSRKAEKLQE 198 (299)
Q Consensus 167 daki~LadKqAaLEKlewE~~~sn~Kve~Lq~ 198 (299)
+.-+.||..+.++..|.-|+.+++.+|+-|+.
T Consensus 148 ~~lvelA~le~~~~~L~~eIkkT~RRVNALE~ 179 (217)
T 3aon_A 148 PKLLKLAEVEKTCQLMAEEIEKTRRRVNALEY 179 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 44578999999999999999999999999875
No 154
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=21.30 E-value=2.3e+02 Score=26.60 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH
Q 022306 139 AVHLKLDELKRLAAEKDSLIKSTQLQLSDAK 169 (299)
Q Consensus 139 a~~akvDELr~~laeKe~likStq~QLsdak 169 (299)
.+..+|..|...+...+.-|+.++.+|...+
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~ 39 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQ 39 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 3334444444444444555555555444433
No 155
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=21.20 E-value=2e+02 Score=22.61 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhH--------HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 022306 113 VEDLQRKMFEKD--------ELLKSLESS--KSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 113 VeeLqkKL~EKD--------elLkSae~~--~~em~a~~akvDELr~~la 152 (299)
+|.||.||.|+. ++|+++=++ =++|-.++.-|-+|+-||.
T Consensus 9 leRLQ~KL~erGd~s~~ekLs~lk~~LqSPLF~qILtlQqSikqLk~Qvn 58 (83)
T 1vf6_A 9 LDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLN 58 (83)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccchHhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 689999998764 566665554 4999999999999998885
No 156
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=21.18 E-value=3.1e+02 Score=21.71 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q 022306 172 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGE 206 (299)
Q Consensus 172 LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~e 206 (299)
+-+....|+.++.|+..+-.=|..+++.++.++.+
T Consensus 49 ~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~ 83 (107)
T 2no2_A 49 TQEQLEVLESLKQELATSQRELQVLQGSLETSAQS 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555554455555555444443
No 157
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.12 E-value=3.4e+02 Score=22.11 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q 022306 142 LKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGE 206 (299)
Q Consensus 142 akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~e 206 (299)
++|.+|..++-.=|.+++.+|.-.+.++-. -+--|.+|-..-..-+..+..||+|=+.+.|.
T Consensus 45 ~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk 106 (112)
T 1x79_B 45 HQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMAVLMQSREQVSEELVRLQKDNDSLQGK 106 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 344444444444444444444433333321 11122222222223344456777776666554
No 158
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=21.05 E-value=3.8e+02 Score=22.72 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 022306 132 SSKSQVNAVHLKLDELKRLAAEK-----DSLIKSTQLQLSDAKIKLADKQAALEK 181 (299)
Q Consensus 132 ~~~~em~a~~akvDELr~~laeK-----e~likStq~QLsdaki~LadKqAaLEK 181 (299)
.+.+.+..|+..|+.||+-|+.+ -..+++++..+..|...|..++.-+..
T Consensus 25 ~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 25 TLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777777777664 567788888888888888777776654
No 159
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=21.04 E-value=3.6e+02 Score=22.45 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 022306 176 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 210 (299)
Q Consensus 176 qAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIssl 210 (299)
|+-+++|+-|+.+=|.|..+..++|..++.++--+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 33478888888888888888888888777776533
No 160
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.02 E-value=99 Score=21.61 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022306 133 SKSQVNAVHLKLDELKR 149 (299)
Q Consensus 133 ~~~em~a~~akvDELr~ 149 (299)
..++|+.++.++.+|..
T Consensus 21 te~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567777777766654
No 161
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.89 E-value=1.1e+02 Score=20.57 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 190 SRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
..||+.|=.+-..++.||..|..++.
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 57999999999999999998887763
No 162
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.86 E-value=86 Score=24.13 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=20.0
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 187 MTVSRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 187 ~~sn~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
+.-..||++|+.-|+.|+.-+..|+.-|.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ 31 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYE 31 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888877777777766665
No 163
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=20.70 E-value=4.8e+02 Score=25.05 Aligned_cols=36 Identities=11% Similarity=0.300 Sum_probs=25.2
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 183 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 183 ewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
--++..-..++..|+.++..++.++..++..+=+|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 334555666777788888888888777776666666
No 164
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=20.38 E-value=6.9e+02 Score=25.44 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 022306 125 ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 125 elLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl 182 (299)
.+=+.+|....||+.+.+-+...+.-++.-..+|.|..+.|..|-..|++-.|..-..
T Consensus 318 ~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f 375 (551)
T 2b5u_A 318 AAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQF 375 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhh
Confidence 3445577777888887777777776666666788888888888888888877766553
No 165
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.24 E-value=1.1e+02 Score=20.74 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHh
Q 022306 190 SRKAEKLQEEVESMQGEMSSFMQIFE 215 (299)
Q Consensus 190 n~Kve~Lq~dl~~m~~eIsslm~~fe 215 (299)
..||+.|-.+...++.||..|..++-
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 46889999999999999888877653
Done!