Query 022306
Match_columns 299
No_of_seqs 25 out of 27
Neff 3.1
Searched_HMMs 13730
Date Mon Mar 25 03:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 74.1 14 0.001 27.2 11.4 41 108-148 5-45 (133)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 69.4 2.9 0.00021 31.2 4.8 93 125-218 5-129 (133)
3 d1owaa_ a.7.1.1 (A:) Spectrin 46.7 38 0.0028 24.3 7.5 95 103-218 25-119 (156)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 41.4 56 0.0041 23.3 10.2 27 105-131 16-42 (107)
5 d1seta1 a.2.7.1 (A:1-110) Sery 38.5 62 0.0045 23.0 7.7 15 105-119 36-50 (110)
6 d1seta1 a.2.7.1 (A:1-110) Sery 38.5 62 0.0045 23.0 8.1 16 105-120 43-58 (110)
7 d1vf6a_ a.194.1.1 (A:) Associa 32.7 50 0.0037 22.7 5.7 40 113-152 5-54 (58)
8 d1fxka_ a.2.5.1 (A:) Prefoldin 31.1 84 0.0061 22.3 9.6 26 124-149 18-43 (107)
9 d2fcwa1 a.13.1.1 (A:216-320) a 24.8 1.3E+02 0.0097 22.6 10.0 65 130-203 25-99 (105)
10 d1cxzb_ a.2.6.1 (B:) Protein k 22.4 93 0.0068 22.7 5.9 28 180-207 59-86 (86)
11 d2efla1 a.238.1.4 (A:1-288) Fo 22.2 1.6E+02 0.011 22.4 15.5 18 135-152 125-142 (288)
12 d2e50a1 d.305.1.1 (A:1-222) Pr 20.3 1.5E+02 0.011 23.8 7.5 50 98-160 27-77 (222)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=74.11 E-value=14 Score=27.17 Aligned_cols=41 Identities=10% Similarity=0.209 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 108 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELK 148 (299)
Q Consensus 108 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr 148 (299)
.|..|++.|+..+..=..-+..+....++...+...|..|.
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444444444444443
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=69.42 E-value=2.9 Score=31.16 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH---H------------hh-----------------
Q 022306 125 ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK---I------------KL----------------- 172 (299)
Q Consensus 125 elLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdak---i------------~L----------------- 172 (299)
++...++.+..++..+++.++.++..++|=+.++.+++. |.+.. + .+
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~-l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE 83 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD-IQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK 83 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeeee
Confidence 445555666667777777777777777776666665542 22100 0 00
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 173 ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 173 adKqAaLEKlewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
-+..-|++-++.-+..-+...+.|+.++..++..|..|...++.|-
T Consensus 84 ~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0234566667666666777777888888888888887777777654
No 3
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.70 E-value=38 Score=24.28 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 022306 103 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 182 (299)
Q Consensus 103 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki~LadKqAaLEKl 182 (299)
.+.+..|.+.-+.|...+.++..-|..+- +.-.++..++++..-+.+++..+.+.. . -.+..-+..
T Consensus 25 ~~~~~~l~~rw~~L~~~~~~R~~~Le~~~----~~~~F~~~~~~l~~Wl~e~e~~~~~~~---~---~d~~~~~~~---- 90 (156)
T d1owaa_ 25 QERRQEVLTRYQSFKERVAERGQKLEDSY----HLQVFKRDADDLGKWIMEKVNILTDKS---Y---EDPTNIQGK---- 90 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---H---CCCSCHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccc---c---cCHHHHHHH----
Confidence 34556666666777777777766665443 234677778888888888887765421 1 123332222
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHhhhh
Q 022306 183 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 218 (299)
Q Consensus 183 ewE~~~sn~Kve~Lq~dl~~m~~eIsslm~~fe~lt 218 (299)
-+|+..++.++...+..|..+...-+.|.
T Consensus 91 -------~~~h~~l~~ei~~~~~~~~~l~~~g~~L~ 119 (156)
T d1owaa_ 91 -------YQKHQSLEAEVQTKSRLMSELEKTREERF 119 (156)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566788888888888888888888776
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=41.41 E-value=56 Score=23.33 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKMFEKDELLKSLE 131 (299)
Q Consensus 105 El~~LreQVeeLqkKL~EKDelLkSae 131 (299)
++..+..|+..|...+.|=+-.|+.++
T Consensus 16 el~~~~~q~~~le~q~~E~~~vl~eL~ 42 (107)
T d1fxka_ 16 QAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=38.53 E-value=62 Score=23.01 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRK 119 (299)
Q Consensus 105 El~~LreQVeeLqkK 119 (299)
+...|+.+++.|+.+
T Consensus 36 ~rr~l~~~~e~l~~~ 50 (110)
T d1seta1 36 EVQELKKRLQEVQTE 50 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555555443
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=38.50 E-value=62 Score=23.00 Aligned_cols=16 Identities=6% Similarity=0.339 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022306 105 ELVALREQVEDLQRKM 120 (299)
Q Consensus 105 El~~LreQVeeLqkKL 120 (299)
++-.|+.+...+-+++
T Consensus 43 ~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 43 RLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 7
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.67 E-value=50 Score=22.74 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhH--------HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 022306 113 VEDLQRKMFEKD--------ELLKSLESS--KSQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 113 VeeLqkKL~EKD--------elLkSae~~--~~em~a~~akvDELr~~la 152 (299)
+|.||.||.|+. ++|+++=.+ -++|-.++.-|-+||.||.
T Consensus 5 leRlQ~KL~erGD~s~~ekL~~lk~~LqSPLF~qiL~lQ~SiqqLk~Qvn 54 (58)
T d1vf6a_ 5 LDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLN 54 (58)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 678999997653 556665554 4999999999999999885
No 8
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=31.14 E-value=84 Score=22.31 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022306 124 DELLKSLESSKSQVNAVHLKLDELKR 149 (299)
Q Consensus 124 DelLkSae~~~~em~a~~akvDELr~ 149 (299)
..+......+..+++.....+++|..
T Consensus 18 ~~~~~q~~~le~q~~E~~~vl~eL~~ 43 (107)
T d1fxka_ 18 QAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555555566666666666553
No 9
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.79 E-value=1.3e+02 Score=22.55 Aligned_cols=65 Identities=11% Similarity=0.224 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHH----------hhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 022306 130 LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKI----------KLADKQAALEKSQWEAMTVSRKAEKLQEE 199 (299)
Q Consensus 130 ae~~~~em~a~~akvDELr~~laeKe~likStq~QLsdaki----------~LadKqAaLEKlewE~~~sn~Kve~Lq~d 199 (299)
+++++.|+.-...+|.-++.-=+ |+.|+..+. ...+++.-..-|+--++.-+.||++|+.|
T Consensus 25 L~SlkeEL~HfE~rl~K~rH~~~---------el~ls~ek~~~~e~~g~~~~~~~~~e~~~~le~kiKk~~~kV~Kl~~d 95 (105)
T d2fcwa1 25 LEAFREELKHFEAKIEKHNHYQK---------QLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQD 95 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhhcccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555322 233333332 12445566667888899999999999999
Q ss_pred Hhhh
Q 022306 200 VESM 203 (299)
Q Consensus 200 l~~m 203 (299)
|.+.
T Consensus 96 Le~r 99 (105)
T d2fcwa1 96 LSGR 99 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9763
No 10
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.37 E-value=93 Score=22.68 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 022306 180 EKSQWEAMTVSRKAEKLQEEVESMQGEM 207 (299)
Q Consensus 180 EKlewE~~~sn~Kve~Lq~dl~~m~~eI 207 (299)
+..+-|+..+|.|...|+.+|..+.+.|
T Consensus 59 ~~V~~eL~~sN~kL~~L~~eL~eLna~i 86 (86)
T d1cxzb_ 59 GPVELLLRGSSRRLDLLHQQLQELHAHV 86 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3477788889999999999988877654
No 11
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.19 E-value=1.6e+02 Score=22.40 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022306 135 SQVNAVHLKLDELKRLAA 152 (299)
Q Consensus 135 ~em~a~~akvDELr~~la 152 (299)
.++......++..++.+-
T Consensus 125 k~~~~~~~~l~k~k~~Y~ 142 (288)
T d2efla1 125 QHIETCWKQLESSKRRFE 142 (288)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 12
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.34 E-value=1.5e+02 Score=23.84 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=32.0
Q ss_pred hhhhcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHH
Q 022306 98 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKR-LAAEKDSLIKS 160 (299)
Q Consensus 98 ~~~k~~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~-~laeKe~likS 160 (299)
....-.++|-.+|.+++.|+.+.. .++..+..+.+.+++ .++.|..+|+.
T Consensus 27 ~~~~~i~~L~~iQ~e~~~l~~e~~-------------~e~~~le~k~~~~~~ply~~R~~iI~g 77 (222)
T d2e50a1 27 EQQEAIEHIDEVQNEIDRLNEQAS-------------EEILKVEQKYNKLRQPFFQKRSELIAK 77 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 334455677777777777665543 356677777777766 56666667653
Done!