BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022310
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H4I3|TRABD_HUMAN TraB domain-containing protein OS=Homo sapiens GN=TRABD PE=1 SV=1
Length = 376
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 16 PNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQ 75
P+ + +P+ P + S +P P+ + LSD A NL + + L ++RQ
Sbjct: 9 PHEANVEPVVPSEAS-EPVPRVLSGDPQNLSDVDA---------FNLLLE--MKLKRRRQ 56
Query: 76 FGPVPAWRSEFVEPE--NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMY 133
+P ++ V + ++++GT H S DS DV + +R ++PD VVVELC+ R ++
Sbjct: 57 RPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLK 116
Query: 134 TSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPF 193
S + + + +++ G + +++LL S+ I+ +
Sbjct: 117 MDE---------STLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAP 167
Query: 194 GDEFRAARKVAEEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNL 237
G EFR A K A +V + LGDRPI +T +RA +L + +K+ L
Sbjct: 168 GGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRL 212
>sp|Q99JY4|TRABD_MOUSE TraB domain-containing protein OS=Mus musculus GN=Trabd PE=2 SV=1
Length = 376
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 79/148 (53%), Gaps = 10/148 (6%)
Query: 91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFS 150
++++GT H S DS DV + +R ++PD VVVELC+ R ++ +++ L
Sbjct: 73 RVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKM-----DERTLLREAKE 127
Query: 151 LSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVG-A 209
+S AV ++ + G +++LL S+ I+ + G EFR A K A +V
Sbjct: 128 VSLEKLQQAVRQNGLMSG----LMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFC 183
Query: 210 QIVLGDRPIEITLERAWNSLKWNEKLNL 237
+ LGDRPI +T +RA +L + +K+ L
Sbjct: 184 KFHLGDRPIPVTFKRAIAALSFWQKVKL 211
>sp|Q58DF3|TRABD_BOVIN TraB domain-containing protein OS=Bos taurus GN=TRABD PE=2 SV=1
Length = 377
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 12/171 (7%)
Query: 70 LIQKRQFGPVPAWRSEFVEPE--NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRS 127
L ++R+ +P +E V + ++++GT H S DS DV + +R ++PD VVVELC+
Sbjct: 51 LKRRRERPNLPHTVTELVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQY 110
Query: 128 RAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISS 187
R ++ +++ L +S + ++I G + +++LL S+ I+
Sbjct: 111 RVSMLKM-----DERTLLREAKEIS----LEKLQQAIRQNGVASGLMQMLLLKVSAHITE 161
Query: 188 DVNRPFGDEFRAARKVAEEVG-AQIVLGDRPIEITLERAWNSLKWNEKLNL 237
+ G EFR A K A V + LGDRPI +T +RA +L +K+ L
Sbjct: 162 QLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPVTFKRAIAALSLWQKVKL 212
>sp|Q58760|Y1365_METJA Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1365 PE=4 SV=1
Length = 397
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
Query: 91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFS 150
+I+LIGT H+S+DS +VE+++ ++ P+ + VEL R + T N+++
Sbjct: 18 DIYLIGTAHVSKDSIEEVEKIISSVSPEGIAVELDDRRFFSLIT-----NEEKKVDLKKV 72
Query: 151 LSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQ 210
L F + L+LA KI G E + A ++A + G
Sbjct: 73 LKEGNFL-------------KFFIYLILANSQKKIGESFGIKPGSEMKKAIEIASKYGLP 119
Query: 211 IVLGDRPIEITLERAWNSLKWNEKLNL 237
I L DR I+ITL R + + + EK+ +
Sbjct: 120 IYLIDRDIDITLSRLMDRMTFKEKMKI 146
>sp|Q73IR2|TPIS_WOLPM Triosephosphate isomerase OS=Wolbachia pipientis wMel GN=tpiA PE=3
SV=1
Length = 242
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 64 DDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVE 123
++ T +I+ + +P V E IW IGT H+ + A + +V+ IK
Sbjct: 129 NEKTKEVIEYQCKNRLPTHGEYTVAYEPIWAIGTGHVPNNDA--IAKVIEVIK------- 179
Query: 124 LCRSRAGIMYTSNGGENDQQLRSNMFSLSGTG--FFGAVGRSIDLGGQTALALRLLLALF 181
LC S+ I+Y GG + N+ S+S G+ D + + +L
Sbjct: 180 LCTSKKHIIY---GGSVSSENIENLLSISNLSGVLIGSASLDFDHFYKIIQQVEKKFSLI 236
Query: 182 SSKISS 187
+SKIS+
Sbjct: 237 NSKISN 242
>sp|A0JYN2|HEM1_ARTS2 Glutamyl-tRNA reductase OS=Arthrobacter sp. (strain FB24) GN=hemA
PE=3 SV=2
Length = 446
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 134 TSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPF 193
T GGE Q L F++S +G AV ++ GQ AL + A SS + R F
Sbjct: 91 TRTGGEVSQHL----FAVS-SGLDSAVVGEREIAGQVRRAL--INAQHEGTASSGLVRLF 143
Query: 194 GDEFRAARKVAEEVGAQIVLGDRPIEI 220
+AA K A++VGAQ LG R + I
Sbjct: 144 ----QAASKTAKDVGAQTALGSRGLSI 166
>sp|Q9RDL5|SYL_STRCO Leucine--tRNA ligase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=leuS PE=3 SV=1
Length = 966
Score = 33.1 bits (74), Expect = 2.5, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 190 NRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLL 238
N + DE + AR +AE V AQ G+R + RAW+SL E+ ++L
Sbjct: 175 NSWYDDEAKKARPIAELV-AQFASGEREVPGHAGRAWSSLSEAERADVL 222
>sp|Q1J0R0|PSRP_DEIGD Putative phosphoenolpyruvate synthase regulatory protein
OS=Deinococcus geothermalis (strain DSM 11300)
GN=Dgeo_0622 PE=3 SV=1
Length = 270
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 175 RLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEIT 221
R LLA F S+ + RPF AR VA EV A G+RP+ T
Sbjct: 24 RALLAHFPSQSLKYLQRPFVASVEVARGVAREVAALAERGERPLIFT 70
>sp|Q61315|APC_MOUSE Adenomatous polyposis coli protein OS=Mus musculus GN=Apc PE=1 SV=1
Length = 2845
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 1 MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATI 52
M+ Q+A+ AN N + TK KP +KP PQ+ ++RT + ++ + +
Sbjct: 1745 MDQVQQASSTSSGANKNQVDTKKKKPTSP-VKPMPQNTEYRTRVRKNTDSKV 1795
>sp|P70478|APC_RAT Adenomatous polyposis coli protein OS=Rattus norvegicus GN=Apc PE=1
SV=1
Length = 2842
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 1 MEAFQKATFPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATI 52
M+ Q+A+ N N + TK KP +KP PQ+ ++RT + ++ + +
Sbjct: 1745 MDQVQQASMTSSGTNKNQIDTKKKKPTSP-VKPMPQNTEYRTRVRKNTDSKV 1795
>sp|B8E2W9|LEU1_DICTD 2-isopropylmalate synthase OS=Dictyoglomus turgidum (strain Z-1310
/ DSM 6724) GN=leuA PE=3 SV=1
Length = 503
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 196 EFRAARKVAEEVGAQIVLG-DRPIEITLERAWNSLKWNE 233
EF A + +AE+V I+ R I + ++RAW ++K++E
Sbjct: 53 EFEAVKNIAEKVKGPIIAALARAIPMDIDRAWEAIKYSE 91
>sp|Q9M4S8|TPIC_FRAAN Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa
GN=TPI PE=2 SV=1
Length = 314
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 79 VPAWRSEFVEPENIWLIGTTHL-SQDSAADVERVVRAIKPDNVVVELCRSRAGIMY--TS 135
VP+W + V E +W IGT + S A +V VR NV E+ S+ I+Y +
Sbjct: 213 VPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVA-SKTRIIYGGSV 271
Query: 136 NGGENDQ 142
NGG + +
Sbjct: 272 NGGNSAE 278
>sp|O19928|PSBB_CYACA Photosystem II CP47 chlorophyll apoprotein OS=Cyanidium caldarium
GN=psbB PE=3 SV=1
Length = 509
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 24/102 (23%)
Query: 80 PAWRSEFVEPENIWLIGTTHLSQDSAADV-----------ERVVRAIKPDNVVVELCRSR 128
PAW E P N I + H++ + + +R+ RA++ N+ L S
Sbjct: 183 PAWGPEGFNPFNPGGIASHHIAAGTVGILAGVFHLNVRPPQRLYRALRMGNIETVLSSSI 242
Query: 129 AGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGGQT 170
A + + S F +SGT ++GA I+L G T
Sbjct: 243 AAVFFAS-------------FVVSGTMWYGAASTPIELFGPT 271
>sp|Q9HR35|DNLI_HALSA DNA ligase OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=lig PE=3 SV=1
Length = 561
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 151 LSGTGFFGAVGRSIDLGGQTALA 173
L+ TG GAV S+DLGGQT LA
Sbjct: 85 LAETGDIGAVAGSLDLGGQTGLA 107
>sp|B0R4C9|DNLI_HALS3 DNA ligase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671
/ R1) GN=lig PE=3 SV=1
Length = 561
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 151 LSGTGFFGAVGRSIDLGGQTALA 173
L+ TG GAV S+DLGGQT LA
Sbjct: 85 LAETGDIGAVAGSLDLGGQTGLA 107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,578,761
Number of Sequences: 539616
Number of extensions: 4434581
Number of successful extensions: 10426
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 10414
Number of HSP's gapped (non-prelim): 20
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)