Query 022310
Match_columns 299
No_of_seqs 162 out of 370
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00261 traB pheromone shutd 100.0 5.8E-46 1.2E-50 361.2 16.1 177 88-284 2-183 (380)
2 COG1916 Uncharacterized homolo 100.0 6.9E-45 1.5E-49 348.6 17.4 177 88-284 10-193 (388)
3 KOG2860 Uncharacterized conser 100.0 2.8E-38 6.1E-43 298.7 3.9 255 9-284 11-272 (359)
4 PF01963 TraB: TraB family; I 99.4 2.6E-13 5.6E-18 122.7 9.0 146 88-250 8-174 (259)
5 KOG2160 Armadillo/beta-catenin 91.5 0.2 4.3E-06 49.4 3.8 51 248-298 92-162 (342)
6 COG3735 Uncharacterized protei 85.0 0.48 1E-05 45.9 1.6 47 80-126 32-80 (299)
7 cd05013 SIS_RpiR RpiR-like pro 67.6 42 0.00092 26.4 8.1 92 88-224 12-103 (139)
8 PF14582 Metallophos_3: Metall 52.1 9.6 0.00021 36.3 2.0 58 65-122 140-212 (255)
9 PF03808 Glyco_tran_WecB: Glyc 50.8 26 0.00056 30.6 4.4 40 91-130 74-115 (172)
10 PF10859 DUF2660: Protein of u 47.5 19 0.0004 28.7 2.6 48 227-274 36-85 (86)
11 TIGR00228 ruvC crossover junct 47.0 18 0.00038 32.0 2.8 19 105-123 46-64 (156)
12 PRK00039 ruvC Holliday junctio 45.4 20 0.00043 31.6 2.8 20 105-124 50-69 (164)
13 PRK08057 cobalt-precorrin-6x r 44.2 19 0.00042 33.8 2.7 29 187-218 197-225 (248)
14 PF06628 Catalase-rel: Catalas 41.8 81 0.0018 23.6 5.3 52 223-277 14-67 (68)
15 cd02067 B12-binding B12 bindin 39.8 38 0.00083 27.2 3.5 31 88-122 26-56 (119)
16 PF14202 TnpW: Transposon-enco 39.4 21 0.00045 24.3 1.6 25 89-114 8-32 (37)
17 cd00529 RuvC_resolvase Hollida 38.5 59 0.0013 27.9 4.7 22 102-123 45-66 (154)
18 PF03808 Glyco_tran_WecB: Glyc 35.8 69 0.0015 27.9 4.8 61 64-127 12-83 (172)
19 cd06533 Glyco_transf_WecG_TagA 35.6 48 0.001 28.9 3.7 40 91-130 72-113 (171)
20 PF02571 CbiJ: Precorrin-6x re 34.6 34 0.00073 32.1 2.8 30 187-219 201-230 (249)
21 COG0817 RuvC Holliday junction 34.0 28 0.00062 31.1 2.0 21 103-123 44-64 (160)
22 PF02075 RuvC: Crossover junct 33.9 35 0.00075 29.4 2.5 37 88-124 19-66 (149)
23 PF02310 B12-binding: B12 bind 30.4 1.1E+02 0.0024 24.1 4.8 32 89-124 28-59 (121)
24 PRK13195 pyrrolidone-carboxyla 29.0 1.2E+02 0.0025 28.4 5.2 28 101-128 46-74 (222)
25 PRK11557 putative DNA-binding 28.6 2.8E+02 0.0061 25.5 7.8 34 88-122 127-160 (278)
26 cd02065 B12-binding_like B12 b 28.4 76 0.0016 25.0 3.5 33 88-124 26-58 (125)
27 PF10347 Fmp27_GFWDK: RNA pol 28.0 26 0.00055 31.0 0.7 14 227-240 117-130 (154)
28 PRK02261 methylaspartate mutas 26.2 81 0.0018 26.8 3.4 31 88-122 30-60 (137)
29 PF05099 TerB: Tellurite resis 26.1 1.3E+02 0.0028 24.5 4.6 75 185-264 52-126 (140)
30 PF14030 DUF4245: Protein of u 25.8 39 0.00084 29.9 1.4 96 32-133 35-132 (169)
31 PRK11756 exonuclease III; Prov 25.4 75 0.0016 29.0 3.3 21 103-123 13-33 (268)
32 PF03704 BTAD: Bacterial trans 24.7 69 0.0015 26.2 2.7 28 176-203 117-144 (146)
33 PRK02122 glucosamine-6-phospha 24.6 1E+02 0.0022 33.1 4.5 24 99-122 505-528 (652)
34 TIGR02654 circ_KaiB circadian 24.6 1.3E+02 0.0028 24.3 4.1 34 91-124 7-40 (87)
35 cd07313 terB_like_2 tellurium 24.6 3.3E+02 0.0072 21.0 8.0 66 193-262 35-100 (104)
36 TIGR00696 wecB_tagA_cpsF bacte 23.6 1.2E+02 0.0026 27.0 4.2 27 105-131 89-115 (177)
37 PRK00994 F420-dependent methyl 23.4 1.5E+02 0.0032 28.6 4.8 36 88-123 30-67 (277)
38 COG2120 Uncharacterized protei 23.3 93 0.002 28.7 3.5 37 91-127 79-120 (237)
39 PF02585 PIG-L: GlcNAc-PI de-N 22.8 74 0.0016 25.7 2.5 22 101-122 85-106 (128)
40 COG5441 Uncharacterized conser 22.7 1.6E+02 0.0035 29.4 5.1 42 89-130 2-43 (401)
41 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.5 92 0.002 24.7 3.0 30 195-224 60-89 (126)
42 cd07365 MhpB_like Subunit B of 22.5 1.1E+02 0.0024 29.7 4.0 34 93-126 4-52 (310)
43 PRK09301 circadian clock prote 22.0 1.5E+02 0.0033 24.7 4.2 34 91-124 10-43 (103)
44 PF05582 Peptidase_U57: YabG p 22.0 96 0.0021 30.2 3.4 32 91-123 129-161 (287)
45 cd05014 SIS_Kpsf KpsF-like pro 21.6 98 0.0021 24.6 3.0 31 91-122 2-32 (128)
46 PF10945 DUF2629: Protein of u 21.6 82 0.0018 22.5 2.1 28 36-63 16-43 (44)
47 COG2039 Pcp Pyrrolidone-carbox 21.4 1.3E+02 0.0027 28.1 3.9 43 88-130 32-75 (207)
48 PRK03692 putative UDP-N-acetyl 21.4 1.3E+02 0.0028 28.2 4.1 27 105-131 146-172 (243)
49 COG1879 RbsB ABC-type sugar tr 20.8 71 0.0015 29.6 2.2 26 196-221 104-129 (322)
50 PF10087 DUF2325: Uncharacteri 20.3 1.8E+02 0.0038 22.8 4.1 32 196-228 63-95 (97)
51 TIGR00715 precor6x_red precorr 20.1 86 0.0019 29.6 2.6 22 197-218 212-233 (256)
52 PF03372 Exo_endo_phos: Endonu 20.1 1.1E+02 0.0025 25.5 3.2 23 103-125 16-39 (249)
No 1
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=100.00 E-value=5.8e-46 Score=361.17 Aligned_cols=177 Identities=25% Similarity=0.389 Sum_probs=153.3
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhhhhhccCCCC--CCChHHhhhhhcccCCCccccccchhhc
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNG--GENDQQLRSNMFSLSGTGFFGAVGRSID 165 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R~~~L~~~~~--~~~~~~lk~~~~~l~~~~~~~av~~~i~ 165 (299)
++++||||||||||++|+++|+++|+++|||+||||||++|++.|..+.+ .++.+++|
T Consensus 2 ~~~~i~lvGTAHvS~~S~~eV~~~I~~~~PD~VaVELd~~R~~~l~~~~~~~~di~~vlk-------------------- 61 (380)
T TIGR00261 2 HEKTIYILGTAHVSKKSSEEVANLIEILKPDYIAVELDERRYHSLLNTKWRNLDIDKVLK-------------------- 61 (380)
T ss_pred CCcEEEEEecccCCHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHhhhhhccCCHHHHhh--------------------
Confidence 68999999999999999999999999999999999999999998876632 23333333
Q ss_pred ccchHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCeEEEccccHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 022310 166 LGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGI 245 (299)
Q Consensus 166 ~gg~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~iTL~Raw~~Ls~~eKlkL~~~Ll~~~ 245 (299)
.|+...++++++|++||+|+++++|++||+||++|+++|+++||+|+||||||++|++|+|++|+||+|+||+++|+++.
T Consensus 62 ~g~~~~~l~~~~La~~q~~l~~~~gi~PG~Em~~Ai~~A~e~g~~v~LiDRdI~iTl~R~w~~~~~~eK~kl~~~l~~~~ 141 (380)
T TIGR00261 62 QGNAFFLIINLILANFQKKLGEEQGIKPGSEMKTAIEKAKKHGIPLILIDRDIETTLKRAWISITFFEKAKIISSLFSST 141 (380)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCcEEEeCCCHhHHHHHHHHhCCHHHHHHHHHHHHhcc
Confidence 44445588899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCHHHHHhhhhHHHHHHHHHhhhccc---cccCCcch
Q 022310 246 TSPSDMSLDNLKVFLLLKDVLHFFSCQLTMC---LHNHNCSI 284 (299)
Q Consensus 246 ~~~~~is~eeie~~d~l~~~l~E~~~~~~~~---l~~en~~~ 284 (299)
+..++.+.|++++.|.++.+|+||...+|.- |-+|++.+
T Consensus 142 ~~~~e~~ie~l~~~d~L~~~~~e~~~~~P~l~~~LIdERD~y 183 (380)
T TIGR00261 142 DAKIEDEIEKLLEQDALSKIMKELSKISPKVKKVLIDERDEF 183 (380)
T ss_pred ccCCHHHHHHhhhhhHHHHHHHHHhhhCCchhhHHHHHHHHH
Confidence 7544444455666888999999998776654 77788777
No 2
>COG1916 Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]
Probab=100.00 E-value=6.9e-45 Score=348.60 Aligned_cols=177 Identities=32% Similarity=0.468 Sum_probs=158.3
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhhhhhccCCCC--CCChHHhhhhhcccCCCccccccchhhc
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNG--GENDQQLRSNMFSLSGTGFFGAVGRSID 165 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R~~~L~~~~~--~~~~~~lk~~~~~l~~~~~~~av~~~i~ 165 (299)
+.++||||||||||++|+++|+++|++++||+|+||||+.|+..|..... .++.+.+|
T Consensus 10 ~~~~v~iiGTAHVS~~SveeVrr~I~~~~PDaVAVELd~~R~~sLl~~~~~~ldl~~vlk-------------------- 69 (388)
T COG1916 10 EEKEVYILGTAHVSKDSVEEVRRIILEEKPDAVAVELDEARLLSLLGGSREELDLAQVLK-------------------- 69 (388)
T ss_pred ccceEEEEeeeecCHhHHHHHHHHHHhcCCCeEEEEecHHHHHHHhcCCcccCCHHHHHH--------------------
Confidence 45699999999999999999999999999999999999999998877665 33344554
Q ss_pred ccchHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCeEEEccccHHHHHHHHHhcCChHHHHHHHHHHHHh-
Q 022310 166 LGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRG- 244 (299)
Q Consensus 166 ~gg~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~iTL~Raw~~Ls~~eKlkL~~~Ll~~- 244 (299)
.|+...++.+++|++||+|+|+++|++||+||++||+.|++.|+||+|+||||++||+|+|.+|++|||+|++++|+.+
T Consensus 70 ~Gk~~~~l~~~lLa~~Qrklg~~~Gv~PGsEmk~AIe~A~e~ga~V~lIDRdI~vTl~R~~~~~~~~EKlK~~~~L~~~~ 149 (388)
T COG1916 70 EGKAFFLLAGLLLAYFQRKLGKELGVKPGSEMKAAIEAARELGAPVALIDRDIGVTLRRAWAKMPFWEKLKLISSLISGL 149 (388)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCCEEEecccHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 3444557889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcCC-CCCCHHHHHhhhhHHHHHHHHHhhhccc---cccCCcch
Q 022310 245 ITSP-SDMSLDNLKVFLLLKDVLHFFSCQLTMC---LHNHNCSI 284 (299)
Q Consensus 245 ~~~~-~~is~eeie~~d~l~~~l~E~~~~~~~~---l~~en~~~ 284 (299)
.+.. ++.+.+++...|.++.+|+||++.+|.. |.+|++-|
T Consensus 150 ~~~g~~e~ei~~l~~~D~~~al~~efr~~~P~~~~vLIDERd~y 193 (388)
T COG1916 150 LFPGQSEIEIDELKQEDVLSALMQEFRRFSPTVYKVLIDERDRY 193 (388)
T ss_pred ccCCCchHHHHHHhhhhHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 4554 4677788888999999999999999987 88998877
No 3
>KOG2860 consensus Uncharacterized conserved protein, contains TraB domain [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-38 Score=298.70 Aligned_cols=255 Identities=27% Similarity=0.328 Sum_probs=208.3
Q ss_pred CCcccCCCCCCCCCCCCccccccCCCCCCccchHHhhHhhHHHHhhhccchhhhccCCchhhhhhccCCCCCCccccccC
Q 022310 9 FPIFSANPNLLSTKPIKPFKVSIKPPPQDFDFRTEILSDSQATIAKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVE 88 (299)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 88 (299)
||+|+++ .+++. .+ ++.++..+|+++++|..|..+++++++.++|+ .+++.+ + .++..+++.|+|+- +..
T Consensus 11 ~~~~~~~--e~~~~-~~-~~~~~~g~~~~~~~r~di~~~~~~a~a~~~~e-~dla~~-~---~~~~~~~~d~~~~k-~l~ 80 (359)
T KOG2860|consen 11 YELEQAP--EATED-AV-VNNPVCGGYHFGRKRADIFVPNANAVAVLKWE-TDLAIP-P---RNPVLSDSDEEWKK-AIL 80 (359)
T ss_pred ccccCCh--Hhhhh-hh-ccCcccCCcccchhhhhccchhhhhhhccCCc-hhcccC-C---CCCcccCCcHHHHH-hhc
Confidence 7777776 44444 33 67889999999999999999999999999999 999977 4 67778899999998 888
Q ss_pred CcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhhhhhccCCCCCCChHHhhhhhcccCCCccccccchhhcccc
Q 022310 89 PENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLGG 168 (299)
Q Consensus 89 ~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R~~~L~~~~~~~~~~~lk~~~~~l~~~~~~~av~~~i~~gg 168 (299)
+++||||||+|+|++|.++|..+|+.+|||.|+||||++|..++...+. .+.+..-.+.|.+|.+.++++.+.+|
T Consensus 81 ~s~i~lVgTah~S~Es~~~v~~virtv~pd~V~vElCrsr~sIis~~ep-----~l~se~evl~g~~f~~~~~~~~~~gG 155 (359)
T KOG2860|consen 81 DSTIYLVGTAHFSKESQEDVSNVIRAVQPDFVMVELCRSRISIISADEP-----QLLSEAEVLNGAKFRGIFEEAGKIGG 155 (359)
T ss_pred cceeEEEEeeecCccccccHHHHhhccCcceeehhhccchhhcccccCh-----hhhccCcccCCcceeeeeccccccCc
Confidence 8999999999999999999999999999999999999999887665543 34444556678899999999888888
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHh-CCeEEEccccHHHHHHHHHhcCChHHHHHHHHHHHHhhcC
Q 022310 169 QTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEV-GAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITS 247 (299)
Q Consensus 169 ~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~-ga~VvLgDRdI~iTL~Raw~~Ls~~eKlkL~~~Ll~~~~~ 247 (299)
.+.++ +..++.+..+++++.||+||++|-+++-+. ||.++||||+|++||.|+|+.||+|+|+++++.+-++..
T Consensus 156 ~~~L~----lrsv~a~~~~dLdmaa~gefr~a~~efs~~~g~~v~lgDrpieitLqRa~~eLs~~~a~~lv~~vt~s~~- 230 (359)
T KOG2860|consen 156 IVFLL----LRSVSAKDLGDLDMAAGGEFRRASREFSTLMGCLVVLGDRPIEITLQRALSELSSWQAVVLVGHVTFSKK- 230 (359)
T ss_pred eEehh----hhhhhhhhccccccccchhHHHHhhhhccCCCceEEecCCcceeeHHHHHHhcchhheeeEEEEEEEeec-
Confidence 87644 444566677889999999999999999665 999999999999999999999999999999998654432
Q ss_pred CCCCCHHHHHh---hhhHHHHHHHHHhhhccc---cccCCcch
Q 022310 248 PSDMSLDNLKV---FLLLKDVLHFFSCQLTMC---LHNHNCSI 284 (299)
Q Consensus 248 ~~~is~eeie~---~d~l~~~l~E~~~~~~~~---l~~en~~~ 284 (299)
+.++.+++++ -|.++..+.|+.-.+|.- |..|++-+
T Consensus 231 -~s~~t~eve~c~q~~Lveql~~~~a~~vp~~~lvlv~eRd~y 272 (359)
T KOG2860|consen 231 -NSIQTEEVENCKQTDLVEQLTIEMANFVPALSLVLVQERDLY 272 (359)
T ss_pred -cccchhhhhhhhHHhHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 3444555554 567788888888666643 55555443
No 4
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=99.45 E-value=2.6e-13 Score=122.72 Aligned_cols=146 Identities=25% Similarity=0.254 Sum_probs=102.3
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHh--cCCCeEEEee------------------chhhhhhccCCCC-CCChHHhhh
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRA--IKPDNVVVEL------------------CRSRAGIMYTSNG-GENDQQLRS 146 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~--vkPD~V~VEL------------------c~~R~~~L~~~~~-~~~~~~lk~ 146 (299)
+|.++||+||+|+++.|...+.+.|++ .+||+|+||+ |..++..+..++. ..+...++.
T Consensus 8 ~g~~~yL~GT~H~~~~~~~~~~~~i~~a~~~sd~v~~E~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~l~~~~~~ 87 (259)
T PF01963_consen 8 NGKTVYLLGTIHVSPKSFYPLPDAIEEALKKSDVVVVELDMSDPEAQAQMQQAMMLPDGKTLKDLLSPEEYARLEELLAE 87 (259)
T ss_pred CCeEEEEEeccCCCchhhhhhHHHHHHHHhcCCEEEEecccccHHHHHHHHhhccCCCcccHHHhcCHHHHHHHHHHHHh
Confidence 479999999999999999999999999 9999999999 3333322222211 111111111
Q ss_pred hhcccCCCccccccchhhcccchHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCeEEEccccHHHHHHHHH
Q 022310 147 NMFSLSGTGFFGAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAW 226 (299)
Q Consensus 147 ~~~~l~~~~~~~av~~~i~~gg~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~iTL~Raw 226 (299)
. +.+. ..+...+...+.+.+.+..+++.+..+.|+.++.+++++.+.++..| |.|++.++|+.|.+
T Consensus 88 ~-----~~~~-----~~~~~~~p~~~~~~l~~~~~~~~~~~~~gvd~~l~~~A~~~~~~v~~----Le~~~~q~~~~~~~ 153 (259)
T PF01963_consen 88 Y-----GLPL-----EMLRKLKPWAAAFLLSLSAFQKGYSPEYGVDPYLEQRAAEEGKPVVG----LETREEQITLLRSL 153 (259)
T ss_pred c-----CCCH-----HHHHcCCHHHHHHHHHHHHHhccccccccccHHHHHHHHHhCCCccc----ccCHHHHHHHHhcC
Confidence 0 1000 22333444445556666778888888899999999988877766666 99999999998655
Q ss_pred hcCChHHHHHHHHHHHHhhcCCCC
Q 022310 227 NSLKWNEKLNLLINVIRGITSPSD 250 (299)
Q Consensus 227 ~~Ls~~eKlkL~~~Ll~~~~~~~~ 250 (299)
+.+++++++...+..+....+
T Consensus 154 ---~~~~q~~~L~~~l~~~~~~~~ 174 (259)
T PF01963_consen 154 ---PLDEQVKMLRETLDDIEDGEK 174 (259)
T ss_pred ---CHHHHHHHHHHHHhccccchH
Confidence 999999999988766443333
No 5
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.50 E-value=0.2 Score=49.36 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=34.8
Q ss_pred CCCCCHHHHHh-hhhHHHHHHHHH---hhhcc--------ccccCCcch--------hhhhccchhhhccc
Q 022310 248 PSDMSLDNLKV-FLLLKDVLHFFS---CQLTM--------CLHNHNCSI--------FDMCQNYFFCLGRI 298 (299)
Q Consensus 248 ~~~is~eeie~-~d~l~~~l~E~~---~~~~~--------~l~~en~~~--------~~~~qn~~~~~~~~ 298 (299)
..+.|.|+.+. +|.+...+|-+- -++++ .|+|.+..+ |+|.||||+||+.+
T Consensus 92 ~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v 162 (342)
T KOG2160|consen 92 SSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQV 162 (342)
T ss_pred cccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34667777665 777777776665 12222 466666666 99999999999864
No 6
>COG3735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.01 E-value=0.48 Score=45.93 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=32.4
Q ss_pred CCccccccCCcEEEEEeccccChhHHHHHHHHHHh--cCCCeEEEeech
Q 022310 80 PAWRSEFVEPENIWLIGTTHLSQDSAADVERVVRA--IKPDNVVVELCR 126 (299)
Q Consensus 80 p~~~~~~~~~~eIyLVGTAHVS~~Sa~eV~~vI~~--vkPD~V~VELc~ 126 (299)
|.|..+.-.++.+||+||.||.+.=..---..|.. .+-|.++||+|.
T Consensus 32 ~~~~i~~~G~s~~yL~GTiHvg~~~~~~lp~~~~~a~~~A~tLivE~d~ 80 (299)
T COG3735 32 PFWKIEKPGNSPLYLLGTIHVGSPRVLPLPDKLLKALDQADTLIVEADD 80 (299)
T ss_pred cceeeecCCCCceEEeeeeecCCCccccCCHHHHHHHhhcCceEEEecc
Confidence 36777777888899999999986533222222211 367999999995
No 7
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=67.63 E-value=42 Score=26.45 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=58.9
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhhhhhccCCCCCCChHHhhhhhcccCCCccccccchhhccc
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAGIMYTSNGGENDQQLRSNMFSLSGTGFFGAVGRSIDLG 167 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R~~~L~~~~~~~~~~~lk~~~~~l~~~~~~~av~~~i~~g 167 (299)
+-+.|+++|+-+ |...+.+.....+...+++.++.-...........+.. +..=. +...
T Consensus 12 ~~~~i~i~g~g~-s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~i~----iS~~ 70 (139)
T cd05013 12 KARRIYIFGVGS-SGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPG----------------DVVIA----ISFS 70 (139)
T ss_pred hCCEEEEEEcCc-hHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCC----------------CEEEE----EeCC
Confidence 347899999965 88899999999999999888874444433322211111 11100 0011
Q ss_pred chHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCeEEEccccHHHHHHH
Q 022310 168 GQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLER 224 (299)
Q Consensus 168 g~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~iTL~R 224 (299)
|-. .++..+++.|++.|++++++--.-+-++.+
T Consensus 71 ----------------------g~~--~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 71 ----------------------GET--KETVEAAEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred ----------------------CCC--HHHHHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence 111 368888899999999999987766655555
No 8
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=52.10 E-value=9.6 Score=36.26 Aligned_cols=58 Identities=26% Similarity=0.383 Sum_probs=37.5
Q ss_pred CCchhhhhhccCCC--CCCcc--------ccccCCcEEEEEeccc-c----ChhHHHHHHHHHHhcCCCeEEE
Q 022310 65 DGTLVLIQKRQFGP--VPAWR--------SEFVEPENIWLIGTTH-L----SQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 65 ~~~~~~~~~~~~~~--~p~~~--------~~~~~~~eIyLVGTAH-V----S~~Sa~eV~~vI~~vkPD~V~V 122 (299)
.|.+.--++.++.+ +|+|. .++.+.+.|.|+.|.- + ....++.|.++|++.+|++|++
T Consensus 140 GGeI~~~~~~~~~~LrYP~weaey~lk~l~elk~~r~IlLfhtpPd~~kg~~h~GS~~V~dlIk~~~P~ivl~ 212 (255)
T PF14582_consen 140 GGEITDDQREEEFKLRYPAWEAEYSLKFLRELKDYRKILLFHTPPDLHKGLIHVGSAAVRDLIKTYNPDIVLC 212 (255)
T ss_dssp -SEEESSS-BCSSS-EEEHHHHHHHHGGGGGCTSSEEEEEESS-BTBCTCTBTTSBHHHHHHHHHH--SEEEE
T ss_pred CccccCCCccccccccchHHHHHHHHHHHHhcccccEEEEEecCCccCCCcccccHHHHHHHHHhcCCcEEEe
Confidence 34444444444444 89987 4445778899988755 1 3346779999999999999976
No 9
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.75 E-value=26 Score=30.61 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=23.7
Q ss_pred EEEEEecccc--ChhHHHHHHHHHHhcCCCeEEEeechhhhh
Q 022310 91 NIWLIGTTHL--SQDSAADVERVVRAIKPDNVVVELCRSRAG 130 (299)
Q Consensus 91 eIyLVGTAHV--S~~Sa~eV~~vI~~vkPD~V~VELc~~R~~ 130 (299)
.+-++|+.|- .++..+++-+.|++.+||+|+|=|-.-|+.
T Consensus 74 ~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 74 GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQE 115 (172)
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 3455666553 455566666666666666666666555544
No 10
>PF10859 DUF2660: Protein of unknown function (DUF2660); InterPro: IPR022589 This is a bacterial group of proteins with unknown function found in Rickettsiales.
Probab=47.52 E-value=19 Score=28.74 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=39.0
Q ss_pred hcCChHHHHHHHHHHHHhhcCC--CCCCHHHHHhhhhHHHHHHHHHhhhc
Q 022310 227 NSLKWNEKLNLLINVIRGITSP--SDMSLDNLKVFLLLKDVLHFFSCQLT 274 (299)
Q Consensus 227 ~~Ls~~eKlkL~~~Ll~~~~~~--~~is~eeie~~d~l~~~l~E~~~~~~ 274 (299)
.+|++.|++.|-|.++..+... ...|.||+.+..+-..+|.|+++-+-
T Consensus 36 kKLtLqe~iElSWkFLYDiTe~ILnkFskeDv~~VnKcG~~L~EnGvrYe 85 (86)
T PF10859_consen 36 KKLTLQERIELSWKFLYDITETILNKFSKEDVIQVNKCGQILFENGVRYE 85 (86)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHcccccc
Confidence 4889999999999888766543 36889999998899999999887553
No 11
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=46.99 E-value=18 Score=32.03 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCeEEEe
Q 022310 105 AADVERVVRAIKPDNVVVE 123 (299)
Q Consensus 105 a~eV~~vI~~vkPD~V~VE 123 (299)
-++++++|++.+||.|+||
T Consensus 46 ~~~l~~~i~~y~P~~~aiE 64 (156)
T TIGR00228 46 YAGVTEIITQFQPNYFAIE 64 (156)
T ss_pred HHHHHHHHHHhCCCEEEEe
Confidence 4678999999999999998
No 12
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=45.43 E-value=20 Score=31.64 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCCeEEEee
Q 022310 105 AADVERVVRAIKPDNVVVEL 124 (299)
Q Consensus 105 a~eV~~vI~~vkPD~V~VEL 124 (299)
.+.+.++|++.+||.|+||-
T Consensus 50 ~~~l~~~i~~~~Pd~vaiE~ 69 (164)
T PRK00039 50 YDGLSELIDEYQPDEVAIEE 69 (164)
T ss_pred HHHHHHHHHHhCCCEEEEeh
Confidence 47899999999999999983
No 13
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=44.23 E-value=19 Score=33.76 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=22.9
Q ss_pred hcCCCCchHHHHHHHHHHHHhCCeEEEccccH
Q 022310 187 SDVNRPFGDEFRAARKVAEEVGAQIVLGDRPI 218 (299)
Q Consensus 187 ~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI 218 (299)
++.|-. | +.+=+++|+++|++|++++||.
T Consensus 197 K~SG~~-g--~~eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 197 KNSGGA-G--TEAKLEAARELGIPVVMIARPA 225 (248)
T ss_pred cCCCch-h--hHHHHHHHHHcCCeEEEEeCCC
Confidence 445555 5 5556799999999999999995
No 14
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=41.79 E-value=81 Score=23.64 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=36.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhcCCCCCCHHHHHh--hhhHHHHHHHHHhhhcccc
Q 022310 223 ERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKV--FLLLKDVLHFFSCQLTMCL 277 (299)
Q Consensus 223 ~Raw~~Ls~~eKlkL~~~Ll~~~~~~~~is~eeie~--~d~l~~~l~E~~~~~~~~l 277 (299)
+-+|+.|+-.+|-.|+..+...+ ..++.++|++ +.....+=.+|+..+...|
T Consensus 14 ~~ly~~l~~~er~~lv~nia~~l---~~v~~~~i~~r~l~~f~~vd~~lg~~v~~~l 67 (68)
T PF06628_consen 14 RDLYRVLSDEERERLVENIAGHL---SGVSDEEIQERVLAYFYKVDPDLGQRVAEAL 67 (68)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHH---TTSSHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHH---ccCChhhHHHHHHHHHHHhCHHHHHHHHHHc
Confidence 34799999999999999988876 4566777777 4455555556665554443
No 15
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=39.83 E-value=38 Score=27.16 Aligned_cols=31 Identities=6% Similarity=0.132 Sum_probs=25.1
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEE
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~V 122 (299)
.|-+|+-+|+ .-+.+++.+.+.+.+||+|++
T Consensus 26 ~G~~V~~lg~----~~~~~~l~~~~~~~~pdvV~i 56 (119)
T cd02067 26 AGFEVIDLGV----DVPPEEIVEAAKEEDADAIGL 56 (119)
T ss_pred CCCEEEECCC----CCCHHHHHHHHHHcCCCEEEE
Confidence 4678888884 345668888899999999998
No 16
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=39.42 E-value=21 Score=24.28 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=19.5
Q ss_pred CcEEEEEeccccChhHHHHHHHHHHh
Q 022310 89 PENIWLIGTTHLSQDSAADVERVVRA 114 (299)
Q Consensus 89 ~~eIyLVGTAHVS~~Sa~eV~~vI~~ 114 (299)
|.+.|+|+. |+|+.|.+-.++-|.+
T Consensus 8 G~Tty~V~~-~F~~~s~et~~DKi~r 32 (37)
T PF14202_consen 8 GKTTYVVEV-HFSETSKETMQDKIKR 32 (37)
T ss_pred CCEEEEEEE-EECCCccccHHHHHHH
Confidence 788999998 9998887766655543
No 17
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=38.53 E-value=59 Score=27.92 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHhcCCCeEEEe
Q 022310 102 QDSAADVERVVRAIKPDNVVVE 123 (299)
Q Consensus 102 ~~Sa~eV~~vI~~vkPD~V~VE 123 (299)
....+.++++|+..+||.|++|
T Consensus 45 ~~I~~~l~~~i~~~~Pd~vaiE 66 (154)
T cd00529 45 KTIYDGLNEVIDQFQPDVVAIE 66 (154)
T ss_pred HHHHHHHHHHHHHhCCCEEEEE
Confidence 4567899999999999999999
No 18
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=35.84 E-value=69 Score=27.91 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=43.5
Q ss_pred cCCchhhhhhccCCCCCCccccc-----------cCCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechh
Q 022310 64 DDGTLVLIQKRQFGPVPAWRSEF-----------VEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRS 127 (299)
Q Consensus 64 ~~~~~~~~~~~~~~~~p~~~~~~-----------~~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~ 127 (299)
++..++..-+....|+|.-.++. ..+..|||+|+ +++.++...+.+++.-|+..+|=-+..
T Consensus 12 DG~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~---~~~~~~~~~~~l~~~yP~l~ivg~~~g 83 (172)
T PF03808_consen 12 DGMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGG---SEEVLEKAAANLRRRYPGLRIVGYHHG 83 (172)
T ss_pred CCHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 44455555555555566544221 25689999999 578899999999999999988865554
No 19
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=35.61 E-value=48 Score=28.94 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=23.1
Q ss_pred EEEEEeccccChhH--HHHHHHHHHhcCCCeEEEeechhhhh
Q 022310 91 NIWLIGTTHLSQDS--AADVERVVRAIKPDNVVVELCRSRAG 130 (299)
Q Consensus 91 eIyLVGTAHVS~~S--a~eV~~vI~~vkPD~V~VELc~~R~~ 130 (299)
.+.++|+.|..-.. .+++-+.|.+.+||+|+|=|-.-|+.
T Consensus 72 ~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 72 GLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQE 113 (171)
T ss_pred CcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 35566665544322 22346667777777777766666644
No 20
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=34.60 E-value=34 Score=32.13 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=24.2
Q ss_pred hcCCCCchHHHHHHHHHHHHhCCeEEEccccHH
Q 022310 187 SDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIE 219 (299)
Q Consensus 187 ~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~ 219 (299)
++.|-. | +.+=+++|++.|++|++++||..
T Consensus 201 K~SG~~-g--~~eKi~AA~~lgi~vivI~RP~~ 230 (249)
T PF02571_consen 201 KESGGS-G--FDEKIEAARELGIPVIVIKRPPE 230 (249)
T ss_pred cCCCch-h--hHHHHHHHHHcCCeEEEEeCCCC
Confidence 456665 6 55668899999999999999965
No 21
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=34.00 E-value=28 Score=31.09 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhcCCCeEEEe
Q 022310 103 DSAADVERVVRAIKPDNVVVE 123 (299)
Q Consensus 103 ~Sa~eV~~vI~~vkPD~V~VE 123 (299)
.--+.+.++|++.+||.|+||
T Consensus 44 ~l~~~l~~vl~~~~P~~~AIE 64 (160)
T COG0817 44 QLYDGLSEVLDEYQPDEVAIE 64 (160)
T ss_pred HHHHHHHHHHHHhCCCeeehh
Confidence 345789999999999999999
No 22
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=33.89 E-value=35 Score=29.41 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCcEEEEE--eccccChh---------HHHHHHHHHHhcCCCeEEEee
Q 022310 88 EPENIWLI--GTTHLSQD---------SAADVERVVRAIKPDNVVVEL 124 (299)
Q Consensus 88 ~~~eIyLV--GTAHVS~~---------Sa~eV~~vI~~vkPD~V~VEL 124 (299)
++.++.+| ||.+.++. -.+++.++|++.+||.|++|-
T Consensus 19 ~~~~~~~i~~G~I~t~~~~~~~~Rl~~I~~~l~~li~~~~P~~vaiE~ 66 (149)
T PF02075_consen 19 DGGKLRLIDYGTIKTSSKDSLPERLKEIYEELEELIEEYNPDEVAIEE 66 (149)
T ss_dssp ETTEEEEEEEEEEE---S--HHHHHHHHHHHHHHHHHHH--SEEEEEE
T ss_pred eCCEEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEeeh
Confidence 44554444 55665543 256789999999999999984
No 23
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=30.38 E-value=1.1e+02 Score=24.05 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=25.1
Q ss_pred CcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEee
Q 022310 89 PENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124 (299)
Q Consensus 89 ~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VEL 124 (299)
|-+|.++|. .++ .+++.+.+++.+||+|++=.
T Consensus 28 G~~v~~~d~-~~~---~~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 28 GHEVDILDA-NVP---PEELVEALRAERPDVVGISV 59 (121)
T ss_dssp TBEEEEEES-SB----HHHHHHHHHHTTCSEEEEEE
T ss_pred CCeEEEECC-CCC---HHHHHHHHhcCCCcEEEEEc
Confidence 668888876 333 38888899999999999965
No 24
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=28.95 E-value=1.2e+02 Score=28.39 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred ChhHHHHHHHHHHhcCCCeE-EEeechhh
Q 022310 101 SQDSAADVERVVRAIKPDNV-VVELCRSR 128 (299)
Q Consensus 101 S~~Sa~eV~~vI~~vkPD~V-~VELc~~R 128 (299)
-.+|.+.+.+.|++.+||+| ++=+..+|
T Consensus 46 f~~~~~~l~~~i~~~~Pd~Vi~~G~a~gr 74 (222)
T PRK13195 46 FFESIAAAQQAIAEIEPALVIMLGEYPGR 74 (222)
T ss_pred ehHHHHHHHHHHHHHCCCEEEEeCccCCc
Confidence 36788999999999999976 34444444
No 25
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=28.57 E-value=2.8e+02 Score=25.45 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=26.7
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEE
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~V 122 (299)
+.+.||++|+ ..|.-.++...........++++.
T Consensus 127 ~a~~I~i~G~-G~s~~~A~~~~~~l~~~g~~~~~~ 160 (278)
T PRK11557 127 SARRIILTGI-GASGLVAQNFAWKLMKIGINAVAE 160 (278)
T ss_pred cCCeEEEEec-ChhHHHHHHHHHHHhhCCCeEEEc
Confidence 4678999999 578888888888777777776653
No 26
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=28.42 E-value=76 Score=25.04 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=25.0
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEee
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VEL 124 (299)
.|-++..+|+ ..+.+++.+.+++.+||+|++=.
T Consensus 26 ~G~~v~~l~~----~~~~~~~~~~i~~~~pdiV~iS~ 58 (125)
T cd02065 26 NGFEVIDLGV----DVPPEEIVEAAKEEDADVVGLSA 58 (125)
T ss_pred CCCEEEEcCC----CCCHHHHHHHHHHcCCCEEEEec
Confidence 3667777776 35667777888889999999843
No 27
>PF10347 Fmp27_GFWDK: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019441 This domain is found in fungi, metazoans and plants that contains a characteristic GFWDK sequence motif. These include FMP27 and maize protein APT1 and Arabidopsis homologues SABRE and KIP. The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. APT1 is required for pollen tube growth. It is a Golgi-localised protein and appears to regulate vesicular trafficking []. SABRE and KIP are APT1 homologues and they are involved in the elongation of root cortex cells and pollen tubes respectively.
Probab=27.97 E-value=26 Score=30.95 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.6
Q ss_pred hcCChHHHHHHHHH
Q 022310 227 NSLKWNEKLNLLIN 240 (299)
Q Consensus 227 ~~Ls~~eKlkL~~~ 240 (299)
.+|+||+|++|+++
T Consensus 117 p~LgfWDK~Rll~H 130 (154)
T PF10347_consen 117 PKLGFWDKIRLLFH 130 (154)
T ss_pred CCCCchhhhhhhcc
Confidence 58999999999876
No 28
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.23 E-value=81 Score=26.83 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=26.2
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEE
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~V 122 (299)
.|-+|+-+|+ ++ +.+++-+.+.+.+||+|++
T Consensus 30 ~G~eVi~LG~-~v---p~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 30 AGFEVINLGV-MT---SQEEFIDAAIETDADAILV 60 (137)
T ss_pred CCCEEEECCC-CC---CHHHHHHHHHHcCCCEEEE
Confidence 4788999998 44 4668889999999999998
No 29
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=26.10 E-value=1.3e+02 Score=24.49 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=44.9
Q ss_pred hhhcCCCCchHHHHHHHHHHHHhCCeEEEccccHHHHHHHHHhcCChHHHHHHHHHHHHhhcCCCCCCHHHHHhhhhHHH
Q 022310 185 ISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLLKD 264 (299)
Q Consensus 185 l~~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~iTL~Raw~~Ls~~eKlkL~~~Ll~~~~~~~~is~eeie~~d~l~~ 264 (299)
+...+|+. +.+....++.+...-.. +.+....++.+-..++.-+|..++..++.-...+.+++++|.+-+..+..
T Consensus 52 ~~~~~~~~-~~~~~~l~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~ 126 (140)
T PF05099_consen 52 LAERFGLS-PEEAEELIELADELKQE----PIDLEELLRELRDSLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAE 126 (140)
T ss_dssp HHHCGCGS-CHHHHHHHHHHCHHHHH----CCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHHHhc----cccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 33444543 34455555544433222 56667777777777889999999998888777777787777665544433
No 30
>PF14030 DUF4245: Protein of unknown function (DUF4245)
Probab=25.79 E-value=39 Score=29.94 Aligned_cols=96 Identities=17% Similarity=0.286 Sum_probs=54.8
Q ss_pred CCCCCCccchHHhhHhhHHHH-hhhccchhhhccCCchhhhhhccCCCCCCccccccCCcEEEEEeccccChhHHHH-HH
Q 022310 32 KPPPQDFDFRTEILSDSQATI-AKACPELLNLADDGTLVLIQKRQFGPVPAWRSEFVEPENIWLIGTTHLSQDSAAD-VE 109 (299)
Q Consensus 32 ~~~p~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~eIyLVGTAHVS~~Sa~e-V~ 109 (299)
.+|+|.+||+.+...+.|++- .-..|+|.+-=+.+.. ++...+..+.|.-+++.+..-|+= .+.|..+.+. |.
T Consensus 35 ~~~v~~VD~~~~l~~aar~a~~pv~~P~lP~gW~~nSa---r~~~~~g~~~w~vG~vt~~~~yv~--l~Qs~~~~~~~v~ 109 (169)
T PF14030_consen 35 DGPVPEVDYSAALQTAARAAPFPVRAPELPEGWKANSA---RRQGVGGVPAWHVGYVTPDGQYVQ--LTQSDAPEDTWVA 109 (169)
T ss_pred CCCCcccchhHHHHHHHHhCCCCeeCCCCCCCceeeeE---EecCCCCcceEEEEEEcCCCCEEE--EEEcCCCHHHHHH
Confidence 568889999999999888655 3457776555444443 222233378899888887765541 2455555543 33
Q ss_pred HHHHhcCCCeEEEeechhhhhhcc
Q 022310 110 RVVRAIKPDNVVVELCRSRAGIMY 133 (299)
Q Consensus 110 ~vI~~vkPD~V~VELc~~R~~~L~ 133 (299)
.......+ .=-++.+-.-+....
T Consensus 110 ~~~~~~~~-~gt~~i~G~~W~~y~ 132 (169)
T PF14030_consen 110 SVTGNARE-TGTRTIGGRTWQVYE 132 (169)
T ss_pred HhhCCCCC-CccEEECCEEEEEEE
Confidence 33322222 444444433344433
No 31
>PRK11756 exonuclease III; Provisional
Probab=25.43 E-value=75 Score=29.03 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHhcCCCeEEEe
Q 022310 103 DSAADVERVVRAIKPDNVVVE 123 (299)
Q Consensus 103 ~Sa~eV~~vI~~vkPD~V~VE 123 (299)
...+.+.+.|++.+||+||+.
T Consensus 13 ~~~~~i~~~i~~~~pDIi~LQ 33 (268)
T PRK11756 13 ARPHQLEAIIEKHQPDVIGLQ 33 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEE
Confidence 345679999999999999984
No 32
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=24.73 E-value=69 Score=26.18 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhcCCCCchHHHHHHHHH
Q 022310 176 LLLALFSSKISSDVNRPFGDEFRAARKV 203 (299)
Q Consensus 176 llLa~fqkkl~~~lGv~PG~EfraAie~ 203 (299)
-.+..+.+.+.+++|+.|+.++++-+++
T Consensus 117 ~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 117 RVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 3466777888899999999999987764
No 33
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=24.65 E-value=1e+02 Score=33.14 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.1
Q ss_pred ccChhHHHHHHHHHHhcCCCeEEE
Q 022310 99 HLSQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 99 HVS~~Sa~eV~~vI~~vkPD~V~V 122 (299)
+.+.+.++.|.++|+++|||.|++
T Consensus 505 p~~~~~v~~i~~li~~~kP~~V~~ 528 (652)
T PRK02122 505 PIGEADVEIVMDLLEEIKPHQIFV 528 (652)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEE
Confidence 346677899999999999999998
No 34
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=24.64 E-value=1.3e+02 Score=24.26 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=30.0
Q ss_pred EEEEEeccccChhHHHHHHHHHHhcCCCeEEEee
Q 022310 91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124 (299)
Q Consensus 91 eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VEL 124 (299)
+.|+.|..|-|....+.+++.+++..++-.-+|.
T Consensus 7 rLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeV 40 (87)
T TIGR02654 7 KLYVAGNTPNSVRALKTLKNILETEFQGVYALKV 40 (87)
T ss_pred EEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEE
Confidence 5899999999999999999999999888765554
No 35
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=24.59 E-value=3.3e+02 Score=21.03 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHhCCeEEEccccHHHHHHHHHhcCChHHHHHHHHHHHHhhcCCCCCCHHHHHhhhhH
Q 022310 193 FGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWNEKLNLLINVIRGITSPSDMSLDNLKVFLLL 262 (299)
Q Consensus 193 PG~EfraAie~A~~~ga~VvLgDRdI~iTL~Raw~~Ls~~eKlkL~~~Ll~~~~~~~~is~eeie~~d~l 262 (299)
++.|...+++.++...... -++.-..+++-..++.-+|..++..|+...+.+..+++.|.+-+.++
T Consensus 35 ~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~ADG~~~~~E~~~l~~i 100 (104)
T cd07313 35 DAEEAAELLAEAEALEEEA----PDLYEFTSLIKEHFDYEERLELVEALWEVAYADGELDEYEEHLIRRV 100 (104)
T ss_pred CHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4567788877776643222 25667777888788899999999988888888888888876655333
No 36
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=23.63 E-value=1.2e+02 Score=26.98 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCeEEEeechhhhhh
Q 022310 105 AADVERVVRAIKPDNVVVELCRSRAGI 131 (299)
Q Consensus 105 a~eV~~vI~~vkPD~V~VELc~~R~~~ 131 (299)
.+++.+.|.+-+||.|+|=|-.-|+..
T Consensus 89 ~~~i~~~I~~s~~dil~VglG~PkQE~ 115 (177)
T TIGR00696 89 RKAALAKIARSGAGIVFVGLGCPKQEI 115 (177)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCcHhHH
Confidence 455666777777777777776666553
No 37
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=23.40 E-value=1.5e+02 Score=28.62 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=27.6
Q ss_pred CCcEEEEEec-cccChhHHHHHHHHH-HhcCCCeEEEe
Q 022310 88 EPENIWLIGT-THLSQDSAADVERVV-RAIKPDNVVVE 123 (299)
Q Consensus 88 ~~~eIyLVGT-AHVS~~Sa~eV~~vI-~~vkPD~V~VE 123 (299)
++-++.++|| +..+++.+++|...+ ++.+||.|++=
T Consensus 30 edI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~i 67 (277)
T PRK00994 30 EDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVI 67 (277)
T ss_pred cCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 4567889998 457888888766655 89999998773
No 38
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=23.27 E-value=93 Score=28.68 Aligned_cols=37 Identities=14% Similarity=0.291 Sum_probs=28.6
Q ss_pred EEEEEecc-----ccChhHHHHHHHHHHhcCCCeEEEeechh
Q 022310 91 NIWLIGTT-----HLSQDSAADVERVVRAIKPDNVVVELCRS 127 (299)
Q Consensus 91 eIyLVGTA-----HVS~~Sa~eV~~vI~~vkPD~V~VELc~~ 127 (299)
+++.+|.. |-+.+....+.++|++++||+|++==...
T Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~L~~ii~~~~P~~V~t~~~~d 120 (237)
T COG2120 79 ETIFLGFPDTGADADPEEITGALVAIIRRLRPDVVFTPYPDD 120 (237)
T ss_pred cceecCCCccccccChHHHHHHHHHHHHHhCCCEEEecCCCC
Confidence 46777766 66777777799999999999998754443
No 39
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=22.82 E-value=74 Score=25.69 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHHHhcCCCeEEE
Q 022310 101 SQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 101 S~~Sa~eV~~vI~~vkPD~V~V 122 (299)
..+-++.+.++|++.+||+|+.
T Consensus 85 ~~~~~~~l~~~i~~~~p~~V~t 106 (128)
T PF02585_consen 85 WEELVRDLEDLIREFRPDVVFT 106 (128)
T ss_dssp HHHHHHHHHHHHHHH-ESEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEE
Confidence 5778899999999999999875
No 40
>COG5441 Uncharacterized conserved protein [Function unknown]
Probab=22.70 E-value=1.6e+02 Score=29.41 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=35.1
Q ss_pred CcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhhhh
Q 022310 89 PENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAG 130 (299)
Q Consensus 89 ~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R~~ 130 (299)
.+.||+|||+..-.+--.-+.++|+.--=+.|+|.+.-.|..
T Consensus 2 ~krIyVvgT~DTKg~EL~ylad~I~~aG~~~v~vDvs~~~~~ 43 (401)
T COG5441 2 MKRIYVVGTADTKGEELAYLADLIEAAGGSPVLVDVSTLRNP 43 (401)
T ss_pred CceEEEEecCCCcchhHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 578999999987666566789999999999999999886533
No 41
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.50 E-value=92 Score=24.71 Aligned_cols=30 Identities=33% Similarity=0.317 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCeEEEccccHHHHHHH
Q 022310 195 DEFRAARKVAEEVGAQIVLGDRPIEITLER 224 (299)
Q Consensus 195 ~EfraAie~A~~~ga~VvLgDRdI~iTL~R 224 (299)
.|+..|++.|++.|++|+.+=..-+-++.+
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~la~ 89 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGSTLAR 89 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChHHH
Confidence 489999999999999999776554445544
No 42
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=22.47 E-value=1.1e+02 Score=29.65 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=24.3
Q ss_pred EEEeccccC---------------hhHHHHHHHHHHhcCCCeEEEeech
Q 022310 93 WLIGTTHLS---------------QDSAADVERVVRAIKPDNVVVELCR 126 (299)
Q Consensus 93 yLVGTAHVS---------------~~Sa~eV~~vI~~vkPD~V~VELc~ 126 (299)
-++||.|+- .+.-+++.+.|.+.+||+|+|=-..
T Consensus 4 ~~~~~sH~p~~~~~~~~~~~~~~~~~a~~~l~~~l~~~~PD~iVIigph 52 (310)
T cd07365 4 ALICMSHSPLLGFNDPAPEVVAEVDAAFAAARAFVAAFDPELVVLFAPD 52 (310)
T ss_pred eeeeeCCCcccCCCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 458888843 1234668888899999999985544
No 43
>PRK09301 circadian clock protein KaiB; Provisional
Probab=22.04 E-value=1.5e+02 Score=24.66 Aligned_cols=34 Identities=9% Similarity=0.182 Sum_probs=30.2
Q ss_pred EEEEEeccccChhHHHHHHHHHHhcCCCeEEEee
Q 022310 91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124 (299)
Q Consensus 91 eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VEL 124 (299)
+.|+.|..|-|....+.+++.+++..++-.-+|.
T Consensus 10 rLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeV 43 (103)
T PRK09301 10 KLYVAGNTPNSVRALKTLKNILETEFKGVYALKV 43 (103)
T ss_pred EEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEE
Confidence 6899999999999999999999999888766654
No 44
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=21.98 E-value=96 Score=30.24 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=26.4
Q ss_pred EEEEEeccccC-hhHHHHHHHHHHhcCCCeEEEe
Q 022310 91 NIWLIGTTHLS-QDSAADVERVVRAIKPDNVVVE 123 (299)
Q Consensus 91 eIyLVGTAHVS-~~Sa~eV~~vI~~vkPD~V~VE 123 (299)
.|-.+|- |++ ++--+.|.+++++.+||+|+|=
T Consensus 129 ~i~a~G~-~~~E~eqp~~i~~Ll~~~~PDIlViT 161 (287)
T PF05582_consen 129 GIPAVGI-HVPEKEQPEKIYRLLEEYRPDILVIT 161 (287)
T ss_pred CCceEEE-EechHHhhHHHHHHHHHcCCCEEEEe
Confidence 4777887 777 5567889999999999999973
No 45
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.62 E-value=98 Score=24.63 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=25.6
Q ss_pred EEEEEeccccChhHHHHHHHHHHhcCCCeEEE
Q 022310 91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 91 eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~V 122 (299)
+||++|+- .|.-.++..+.........++++
T Consensus 2 ~I~i~G~G-~S~~~a~~~~~~l~~~g~~~~~~ 32 (128)
T cd05014 2 KVVVTGVG-KSGHIARKIAATLSSTGTPAFFL 32 (128)
T ss_pred eEEEEeCc-HhHHHHHHHHHHhhcCCCceEEc
Confidence 59999996 77788888888888888888776
No 46
>PF10945 DUF2629: Protein of unknown function (DUF2629); InterPro: IPR024487 Some members in this family of proteins are annotated as YhjR however currently no function is known.
Probab=21.59 E-value=82 Score=22.51 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=21.7
Q ss_pred CCccchHHhhHhhHHHHhhhccchhhhc
Q 022310 36 QDFDFRTEILSDSQATIAKACPELLNLA 63 (299)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 63 (299)
|+++|+.-..++--..+...||-|.++.
T Consensus 16 p~~~Y~DIsr~e~l~~~~~RWPLLaEl~ 43 (44)
T PF10945_consen 16 PDINYIDISREERLNQALQRWPLLAELA 43 (44)
T ss_pred CCccHHHHHHHHHHHHHHHHChhHHHHh
Confidence 6899997666666688899999887654
No 47
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=21.40 E-value=1.3e+02 Score=28.06 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=29.5
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeE-EEeechhhhh
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNV-VVELCRSRAG 130 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V-~VELc~~R~~ 130 (299)
.+.+|.-+=-=-+-.+|.+...+.|++++||+| |+=+-.+|..
T Consensus 32 ~g~~V~~~~lP~~f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~~ 75 (207)
T COG2039 32 GGAEVKGRILPVVFKKSIDALVQAIAEVQPDLVLAIGQAGGRTK 75 (207)
T ss_pred cCceEEEEEcCccHHHHHHHHHHHHHhhCCCeEEEecccCCCCc
Confidence 344444333334668999999999999999987 4555555533
No 48
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=21.39 E-value=1.3e+02 Score=28.22 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCeEEEeechhhhhh
Q 022310 105 AADVERVVRAIKPDNVVVELCRSRAGI 131 (299)
Q Consensus 105 a~eV~~vI~~vkPD~V~VELc~~R~~~ 131 (299)
.+++-+.|.+.+||.|+|=|-.-|+..
T Consensus 146 ~~~i~~~I~~s~~dil~VglG~PkQE~ 172 (243)
T PRK03692 146 RQALFERIHASGAKIVTVAMGSPKQEI 172 (243)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcHHHH
Confidence 345667777777888887777666553
No 49
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=20.76 E-value=71 Score=29.64 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCCeEEEccccHHHH
Q 022310 196 EFRAARKVAEEVGAQIVLGDRPIEIT 221 (299)
Q Consensus 196 EfraAie~A~~~ga~VvLgDRdI~iT 221 (299)
.+..+++.|.+.|+||+..|+++...
T Consensus 104 ~~~~~v~~a~~aGIpVv~~d~~~~~~ 129 (322)
T COG1879 104 ALTPAVKKAKAAGIPVVTVDSDIPGP 129 (322)
T ss_pred hhHHHHHHHHHCCCcEEEEecCCCCC
Confidence 68889999999999999999998876
No 50
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.25 E-value=1.8e+02 Score=22.82 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCeEEEcc-ccHHHHHHHHHhc
Q 022310 196 EFRAARKVAEEVGAQIVLGD-RPIEITLERAWNS 228 (299)
Q Consensus 196 EfraAie~A~~~ga~VvLgD-RdI~iTL~Raw~~ 228 (299)
-|..|.+.|++.|.|++... +.+. +|.++...
T Consensus 63 ~~~~vk~~akk~~ip~~~~~~~~~~-~l~~~l~~ 95 (97)
T PF10087_consen 63 AMWKVKKAAKKYGIPIIYSRSRGVS-SLERALER 95 (97)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCHH-HHHHHHHh
Confidence 47888999999999999999 5544 77777654
No 51
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.13 E-value=86 Score=29.56 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCeEEEccccH
Q 022310 197 FRAARKVAEEVGAQIVLGDRPI 218 (299)
Q Consensus 197 fraAie~A~~~ga~VvLgDRdI 218 (299)
+.+=+++|.+.|++|++++||.
T Consensus 212 ~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 212 ELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred hHHHHHHHHHcCCcEEEEeCCC
Confidence 5555799999999999999996
No 52
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=20.06 E-value=1.1e+02 Score=25.50 Aligned_cols=23 Identities=9% Similarity=0.362 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhcCCCeEEEe-ec
Q 022310 103 DSAADVERVVRAIKPDNVVVE-LC 125 (299)
Q Consensus 103 ~Sa~eV~~vI~~vkPD~V~VE-Lc 125 (299)
...+++.+.|...+||+||+. ..
T Consensus 16 ~~~~~i~~~i~~~~~Dii~LQEv~ 39 (249)
T PF03372_consen 16 RKRREIAQWIAELDPDIIALQEVR 39 (249)
T ss_dssp HHHHHHHHHHHHHT-SEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEEecch
Confidence 445679999999999999974 54
Done!