Query 022310
Match_columns 299
No_of_seqs 162 out of 370
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 03:25:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022310.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022310hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvta1 d.159.1.6 (A:4-260) Un 62.0 4.9 0.00036 31.2 5.0 34 89-122 2-35 (257)
2 d1uf3a_ d.159.1.6 (A:) Hypothe 60.0 5.2 0.00038 30.6 4.8 35 88-122 4-38 (228)
3 d1a9xa3 c.30.1.1 (A:1-127) Car 46.9 6.8 0.00049 30.4 3.3 43 80-128 51-94 (127)
4 d1hjra_ c.55.3.6 (A:) RuvC res 44.5 6.6 0.00048 30.8 3.0 29 95-123 30-66 (158)
5 d1akoa_ d.151.1.1 (A:) DNA-rep 42.1 7.7 0.00056 29.1 3.0 21 105-125 15-35 (268)
6 d1xqra1 a.118.1.21 (A:87-350) 40.5 14 0.001 29.7 4.5 27 271-297 62-96 (264)
7 d1a9xa4 c.30.1.1 (A:556-676) C 40.3 9.5 0.00069 29.3 3.2 43 80-128 48-91 (121)
8 d3bzka5 c.55.3.13 (A:325-473) 38.6 6.9 0.0005 30.8 2.2 33 91-123 34-66 (149)
9 d2gana1 d.108.1.1 (A:1-182) Hy 35.4 14 0.001 28.3 3.6 36 197-232 128-163 (182)
10 d1ghea_ d.108.1.1 (A:) Tabtoxi 34.5 10 0.00075 28.9 2.6 36 197-232 109-144 (170)
11 d1iuka_ c.2.1.8 (A:) Hypotheti 32.9 10 0.00073 28.8 2.2 116 87-227 11-135 (136)
12 d2beia1 d.108.1.1 (A:3-169) Di 32.0 16 0.0012 26.3 3.3 37 197-233 108-145 (167)
13 d1yx0a1 d.108.1.1 (A:1-151) Hy 31.0 21 0.0015 27.2 4.0 37 197-233 92-131 (151)
14 d1ccwa_ c.23.6.1 (A:) Glutamat 30.8 19 0.0014 27.4 3.6 32 88-123 30-61 (137)
15 d1vyba_ d.151.1.1 (A:) Endonuc 30.5 20 0.0015 27.2 3.8 20 104-123 21-40 (236)
16 d1dz3a_ c.23.1.1 (A:) Sporulat 26.8 28 0.002 25.1 3.8 30 91-124 26-55 (123)
17 d2b5ga1 d.108.1.1 (A:3-169) Di 24.7 27 0.002 25.3 3.4 37 197-233 108-145 (167)
18 d1a04a2 c.23.1.1 (A:5-142) Nit 23.7 33 0.0024 25.1 3.8 33 89-125 25-57 (138)
19 d1wwza1 d.108.1.1 (A:1-157) Hy 23.5 24 0.0018 25.1 2.9 36 197-232 107-142 (157)
20 d1z4ea1 d.108.1.1 (A:4-153) Tr 22.6 14 0.001 26.6 1.3 36 197-232 104-140 (150)
21 d1uana_ c.134.1.1 (A:) Hypothe 21.7 21 0.0015 28.9 2.3 23 100-122 79-101 (227)
22 d1wdua_ d.151.1.1 (A:) Endonuc 20.8 39 0.0029 25.2 3.7 25 101-125 13-37 (228)
23 d1u6ka1 c.127.1.1 (A:2-283) F4 20.6 59 0.0043 27.8 5.1 36 88-123 30-70 (282)
24 d3bida1 d.348.1.1 (A:1-56) Unc 20.3 69 0.005 20.8 4.4 37 88-124 20-56 (56)
No 1
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}
Probab=61.97 E-value=4.9 Score=31.23 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.4
Q ss_pred CcEEEEEeccccChhHHHHHHHHHHhcCCCeEEE
Q 022310 89 PENIWLIGTTHLSQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 89 ~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~V 122 (299)
+.+|.+|.=.|...+..+.+-+.+.+.+||+|++
T Consensus 2 ~~ri~~isD~h~~~~~l~~l~~~~~~~~~D~vli 35 (257)
T d2yvta1 2 PRKVLAIKNFKERFDLLPKLKGVIAEKQPDILVV 35 (257)
T ss_dssp CCEEEEEECCTTCGGGHHHHHHHHHHHCCSEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhhcCCCEEEE
Confidence 5689999999999999999999999999999976
No 2
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=59.97 E-value=5.2 Score=30.65 Aligned_cols=35 Identities=6% Similarity=0.055 Sum_probs=32.6
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEE
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~V 122 (299)
+.+.|..+|-.|..-+--+.+-+.+++.+||.|++
T Consensus 4 ~~~~i~~~sd~hg~~eale~~~~~~~~~~~D~vv~ 38 (228)
T d1uf3a_ 4 TVRYILATSNPMGDLEALEKFVKLAPDTGADAIAL 38 (228)
T ss_dssp CCCEEEEEECCTTCHHHHHHHHTHHHHHTCSEEEE
T ss_pred cccEEEEEeCCCCCHHHHHHHHHHHhhcCCCEEEE
Confidence 46789999999999999999999999999999997
No 3
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=46.95 E-value=6.8 Score=30.36 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=34.4
Q ss_pred CCcc-ccccCCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhh
Q 022310 80 PAWR-SEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR 128 (299)
Q Consensus 80 p~~~-~~~~~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R 128 (299)
|+++ |++-...++|+ -+-..+.|.++|+.++||.|++-+.-+.
T Consensus 51 P~TVstd~d~aD~lYf------ePlt~e~v~~Ii~~E~pd~il~~~GGQt 94 (127)
T d1a9xa3 51 PATIMTDPEMADATYI------EPIHWEVVRKIIEKERPDAVLPTMGGQT 94 (127)
T ss_dssp TTCGGGCGGGSSEEEC------SCCCHHHHHHHHHHHCCSEEECSSSHHH
T ss_pred hHhhhcChhhcceeee------ecCCHHHHHHHHHHhCcCCeEEEeeeeh
Confidence 6666 77777777875 3556899999999999999998877765
No 4
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}
Probab=44.52 E-value=6.6 Score=30.83 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=22.5
Q ss_pred EeccccChh--------HHHHHHHHHHhcCCCeEEEe
Q 022310 95 IGTTHLSQD--------SAADVERVVRAIKPDNVVVE 123 (299)
Q Consensus 95 VGTAHVS~~--------Sa~eV~~vI~~vkPD~V~VE 123 (299)
-||.+.+.+ -.+.+.++|++.+||.|+||
T Consensus 30 ~g~i~t~~~~~~~Rl~~i~~~l~~li~~~~Pd~vaiE 66 (158)
T d1hjra_ 30 SGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIE 66 (158)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred eeEEeCCCCChHHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 466666543 24678899999999999998
No 5
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=42.12 E-value=7.7 Score=29.06 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCCeEEEeec
Q 022310 105 AADVERVVRAIKPDNVVVELC 125 (299)
Q Consensus 105 a~eV~~vI~~vkPD~V~VELc 125 (299)
.+.+.+.|++.+||+||+.=+
T Consensus 15 ~~~i~~~i~~~~~DIi~LQEv 35 (268)
T d1akoa_ 15 PHQLEAIVEKHQPDVIGLQET 35 (268)
T ss_dssp HHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHHHHCCCCEEEEEee
Confidence 567899999999999999644
No 6
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.47 E-value=14 Score=29.66 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=22.8
Q ss_pred hhhccccccCCcch--------hhhhccchhhhcc
Q 022310 271 CQLTMCLHNHNCSI--------FDMCQNYFFCLGR 297 (299)
Q Consensus 271 ~~~~~~l~~en~~~--------~~~~qn~~~~~~~ 297 (299)
.++..+|+|++..+ +.+|||||.||..
T Consensus 62 ~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~ 96 (264)
T d1xqra1 62 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ 96 (264)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667799999888 9999999999864
No 7
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=40.28 E-value=9.5 Score=29.33 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCcc-ccccCCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhh
Q 022310 80 PAWR-SEFVEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSR 128 (299)
Q Consensus 80 p~~~-~~~~~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R 128 (299)
|+++ +++--..++|+- +-+.+.|.++|+.++||.|++-+.-+-
T Consensus 48 PeTVstd~d~aD~lYfe------plt~e~v~~Ii~~E~p~~ii~~~GGQt 91 (121)
T d1a9xa4 48 PETVSTDYDTSDRLYFE------PVTLEDVLEIVRIEKPKGVIVQYGGQT 91 (121)
T ss_dssp TTSSTTSTTSSSEEECC------CCSHHHHHHHHHHHCCSEEECSSSTHH
T ss_pred hhhhhcChhhcCceEEc------cCCHHHHHHHHHHhCCCEEEeehhhhh
Confidence 6666 677667777753 446889999999999999987765544
No 8
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=38.64 E-value=6.9 Score=30.83 Aligned_cols=33 Identities=3% Similarity=0.068 Sum_probs=24.5
Q ss_pred EEEEEeccccChhHHHHHHHHHHhcCCCeEEEe
Q 022310 91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVE 123 (299)
Q Consensus 91 eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VE 123 (299)
.||..+...-.++..+.+.++|++.+||+|+|-
T Consensus 34 viyp~~~~~~~~~a~~~l~~li~k~~p~vIaIG 66 (149)
T d3bzka5 34 TVYPHAPKNQWDQTLAVLAALCAKHQVELIAIG 66 (149)
T ss_dssp EECCSTTTCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCcHHHHHHHHHHHHHHHHHcCCeEEEEC
Confidence 344434334566778889999999999999994
No 9
>d2gana1 d.108.1.1 (A:1-182) Hypothetical protein PH0736 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=35.39 E-value=14 Score=28.27 Aligned_cols=36 Identities=11% Similarity=0.006 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCeEEEccccHHHHHHHHHhcCChH
Q 022310 197 FRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWN 232 (299)
Q Consensus 197 fraAie~A~~~ga~VvLgDRdI~iTL~Raw~~Ls~~ 232 (299)
|..|++.|++.|+.++|..-+-+..-.+++.++||.
T Consensus 128 l~~~~~~ak~~G~~~~l~~~~~n~~a~~fY~k~GF~ 163 (182)
T d2gana1 128 LEFAVKRLRSLGKDPYVVTFPNLEAYSYYYMKKGFR 163 (182)
T ss_dssp HHHHHHHHHHTTCEEEEEECGGGSHHHHHHHTTTEE
T ss_pred HHHHHHHHHHcCCeEEEEEccCCHHHHHHHHHCCCE
Confidence 567788999999999988777788889999999884
No 10
>d1ghea_ d.108.1.1 (A:) Tabtoxin resistance protein {Pseudomonas syringae [TaxId: 317]}
Probab=34.53 E-value=10 Score=28.87 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCeEEEccccHHHHHHHHHhcCChH
Q 022310 197 FRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWN 232 (299)
Q Consensus 197 fraAie~A~~~ga~VvLgDRdI~iTL~Raw~~Ls~~ 232 (299)
|.++.+.|++.|+..+..+-+.+..-.++|++++|.
T Consensus 109 l~~~~~~a~~~g~~~l~L~~~~n~~a~~fY~k~GF~ 144 (170)
T d1ghea_ 109 MDEVEQVAVKHKRGLLHLDTEAGSVAEAFYSALAYT 144 (170)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcCCceEeeecccchHHHHHHHHCCCE
Confidence 556678899999998777766666678999999884
No 11
>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}
Probab=32.90 E-value=10 Score=28.83 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=65.4
Q ss_pred cCCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeechhhhh--------hccCC-CCCCChHHhhhhhcccCCCccc
Q 022310 87 VEPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELCRSRAG--------IMYTS-NGGENDQQLRSNMFSLSGTGFF 157 (299)
Q Consensus 87 ~~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc~~R~~--------~L~~~-~~~~~~~~lk~~~~~l~~~~~~ 157 (299)
.+.+.|-+||.+.=...-...|-+-+.+...+.+.|=-...... .+.+- +.-|+.-+...
T Consensus 11 ~~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~p----------- 79 (136)
T d1iuka_ 11 SQAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRP----------- 79 (136)
T ss_dssp HHCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSC-----------
T ss_pred hCCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEecc-----------
Confidence 36789999998877777777888888888888777633322111 11111 11111000000
Q ss_pred cccchhhcccchHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHhCCeEEEccccHHHHHHHHHh
Q 022310 158 GAVGRSIDLGGQTALALRLLLALFSSKISSDVNRPFGDEFRAARKVAEEVGAQIVLGDRPIEITLERAWN 227 (299)
Q Consensus 158 ~av~~~i~~gg~~~ll~~llLa~fqkkl~~~lGv~PG~EfraAie~A~~~ga~VvLgDRdI~iTL~Raw~ 227 (299)
......++=....... +-.=+.+|.+=.++.+.|++.|..|+ +|+-+-+...|+.+
T Consensus 80 ------------~~~v~~~v~~~~~~g~-k~i~~q~G~~~~e~~~~a~~~Gi~vV-~~~C~~ie~~rl~~ 135 (136)
T d1iuka_ 80 ------------PSALMDHLPEVLALRP-GLVWLQSGIRHPEFEKALKEAGIPVV-ADRCLMVEHKRLFR 135 (136)
T ss_dssp ------------HHHHTTTHHHHHHHCC-SCEEECTTCCCHHHHHHHHHTTCCEE-ESCCHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHHHhhCC-CeEEEecCccCHHHHHHHHHcCCEEE-cCCccHHHHHHhhC
Confidence 0000000000001100 00014577777789999999999998 89999999999874
No 12
>d2beia1 d.108.1.1 (A:3-169) Diamine acetyltransferase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.01 E-value=16 Score=26.34 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCe-EEEccccHHHHHHHHHhcCChHH
Q 022310 197 FRAARKVAEEVGAQ-IVLGDRPIEITLERAWNSLKWNE 233 (299)
Q Consensus 197 fraAie~A~~~ga~-VvLgDRdI~iTL~Raw~~Ls~~e 233 (299)
|..+++.|++.|++ |.|.-.+-+..-.++|.+++|..
T Consensus 108 ~~~~~~~a~~~g~~~i~l~v~~~N~~A~~~Y~k~GF~~ 145 (167)
T d2beia1 108 IKKVAEVALDKGCSQFRLAVLDWNQRAMDLYKALGAQD 145 (167)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhhhcccccceeeccCCHHHHHHHHHCCCEE
Confidence 55667788999987 66655666788899999999854
No 13
>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]}
Probab=31.02 E-value=21 Score=27.20 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCeEEEcc---ccHHHHHHHHHhcCChHH
Q 022310 197 FRAARKVAEEVGAQIVLGD---RPIEITLERAWNSLKWNE 233 (299)
Q Consensus 197 fraAie~A~~~ga~VvLgD---RdI~iTL~Raw~~Ls~~e 233 (299)
|..|++.|++.||+.+-.+ ++.+..-++++.+++|.+
T Consensus 92 l~~~~~~A~~~g~~~i~L~t~~~~~n~~A~~lY~k~GF~~ 131 (151)
T d1yx0a1 92 LQHIIEEAEKRGYERLSLETGSMASFEPARKLYESFGFQY 131 (151)
T ss_dssp HHHHHHHHHHHTCSCEECCCSSCTTHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCcEEEEEeccccchHHHHHHHHHcCCEE
Confidence 5667889999999988764 677888899999999864
No 14
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=30.78 E-value=19 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=26.7
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEe
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVE 123 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VE 123 (299)
.|-+|+-+|+ ..+.+++-+.+.+.+||+|++=
T Consensus 30 ~G~~V~~LG~----~~p~e~iv~a~~~~~~d~v~lS 61 (137)
T d1ccwa_ 30 AGFNVVNIGV----LSPQELFIKAAIETKADAILVS 61 (137)
T ss_dssp TTCEEEEEEE----EECHHHHHHHHHHHTCSEEEEE
T ss_pred CCCeEEeccc----ccCHHHHHHHHHhcCCCEEEEe
Confidence 4778999997 2467788999999999999983
No 15
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.53 E-value=20 Score=27.22 Aligned_cols=20 Identities=5% Similarity=0.228 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCeEEEe
Q 022310 104 SAADVERVVRAIKPDNVVVE 123 (299)
Q Consensus 104 Sa~eV~~vI~~vkPD~V~VE 123 (299)
-...+.+.|++.+||+||+.
T Consensus 21 ~~~~i~~~i~~~~~DIi~LQ 40 (236)
T d1vyba_ 21 KRHRLASWIKSQDPSVCCIQ 40 (236)
T ss_dssp HHHHHHHHHHHHCCSEEEEE
T ss_pred hHHHHHHHHHHCCCeEEEEE
Confidence 45688999999999999983
No 16
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.78 E-value=28 Score=25.12 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=22.9
Q ss_pred EEEEEeccccChhHHHHHHHHHHhcCCCeEEEee
Q 022310 91 NIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124 (299)
Q Consensus 91 eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VEL 124 (299)
.+++||||+ +.++.-+.+++.+||+|++.+
T Consensus 26 ~~~~v~~a~----~g~~al~~~~~~~~dlillD~ 55 (123)
T d1dz3a_ 26 DMEVIGTAY----NGQDCLQMLEEKRPDILLLDI 55 (123)
T ss_dssp TEEEEEEES----SHHHHHHHHHHHCCSEEEEES
T ss_pred CcEEEEEEC----CHHHHHHHHHhcCCCEEEEcC
Confidence 468899876 344555677889999999887
No 17
>d2b5ga1 d.108.1.1 (A:3-169) Diamine acetyltransferase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.68 E-value=27 Score=25.29 Aligned_cols=37 Identities=5% Similarity=-0.055 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCe-EEEccccHHHHHHHHHhcCChHH
Q 022310 197 FRAARKVAEEVGAQ-IVLGDRPIEITLERAWNSLKWNE 233 (299)
Q Consensus 197 fraAie~A~~~ga~-VvLgDRdI~iTL~Raw~~Ls~~e 233 (299)
|..+++.|++.|+. |.|.-.+-+..-.|+|.+++|..
T Consensus 108 ~~~l~~~a~~~g~~~i~l~v~~~N~~A~~fY~k~GF~~ 145 (167)
T d2b5ga1 108 LKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRGASD 145 (167)
T ss_dssp HHHHHHHHHHHTCSEEEEEEETTCHHHHHHHHTTTCEE
T ss_pred hhhhhhhhcccCcceeeeecccCcHHHHHHHHHCCCEE
Confidence 45567788888987 55666667789999999999854
No 18
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=23.71 E-value=33 Score=25.09 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=24.7
Q ss_pred CcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEeec
Q 022310 89 PENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVELC 125 (299)
Q Consensus 89 ~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VELc 125 (299)
...+++||+|+- .++.-+.+++.+||+|++.+.
T Consensus 25 ~~~~~~v~~a~~----~~~al~~~~~~~~DlvllD~~ 57 (138)
T d1a04a2 25 APDITVVGEASN----GEQGIELAESLDPDLILLDLN 57 (138)
T ss_dssp CTTEEEEEEESS----HHHHHHHHHHHCCSEEEEETT
T ss_pred CCCcEEEEEECC----HHHHHHHHHhcCCCEEEEecC
Confidence 347889999865 444555677789999999874
No 19
>d1wwza1 d.108.1.1 (A:1-157) Hypothetical protein PH1933 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.52 E-value=24 Score=25.07 Aligned_cols=36 Identities=6% Similarity=-0.013 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCeEEEccccHHHHHHHHHhcCChH
Q 022310 197 FRAARKVAEEVGAQIVLGDRPIEITLERAWNSLKWN 232 (299)
Q Consensus 197 fraAie~A~~~ga~VvLgDRdI~iTL~Raw~~Ls~~ 232 (299)
|..+++.|++.|..+.+.-..-+....+++.+++|.
T Consensus 107 l~~~~~~a~~~~~~~~~~v~~~N~~a~~~Y~k~GF~ 142 (157)
T d1wwza1 107 LITCLDFLGKYNDTIELWVGEKNYGAMNLYEKFGFK 142 (157)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhCCceEEEEcCCCHHHHHHHHHCCCE
Confidence 445677888888887776556667788999999874
No 20
>d1z4ea1 d.108.1.1 (A:4-153) Transcriptional regulator BH1968 {Bacillus halodurans [TaxId: 86665]}
Probab=22.58 E-value=14 Score=26.58 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCeEEEcc-ccHHHHHHHHHhcCChH
Q 022310 197 FRAARKVAEEVGAQIVLGD-RPIEITLERAWNSLKWN 232 (299)
Q Consensus 197 fraAie~A~~~ga~VvLgD-RdI~iTL~Raw~~Ls~~ 232 (299)
|..+++.|++.||+.+..+ ..-+.-..++|.+++|.
T Consensus 104 ~~~~~~~a~~~g~~~i~l~~~~~N~~a~~~y~k~GF~ 140 (150)
T d1z4ea1 104 VCWAIERAKERGCHLIQLTTDKQRPDALRFYEQLGFK 140 (150)
T ss_dssp HHHHHHHHHHTTEEEEEEEEETTCTTHHHHHHHHTCE
T ss_pred HHHHHHHHHHcCCCEEEEEEcCCCHHHHHHHHHCCCE
Confidence 5667888999999855554 33445577888888873
No 21
>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]}
Probab=21.66 E-value=21 Score=28.87 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.5
Q ss_pred cChhHHHHHHHHHHhcCCCeEEE
Q 022310 100 LSQDSAADVERVVRAIKPDNVVV 122 (299)
Q Consensus 100 VS~~Sa~eV~~vI~~vkPD~V~V 122 (299)
.+.+...++.++|++.+||+|+.
T Consensus 79 ~~~~~~~~l~~~i~~~~PdiV~t 101 (227)
T d1uana_ 79 DVPEQRLKLAQALRRLRPRVVFA 101 (227)
T ss_dssp CCHHHHHHHHHHHHHHCEEEEEE
T ss_pred cchhhhhhhhhheecccccEEEe
Confidence 45788999999999999999976
No 22
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=20.84 E-value=39 Score=25.20 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHhcCCCeEEEeec
Q 022310 101 SQDSAADVERVVRAIKPDNVVVELC 125 (299)
Q Consensus 101 S~~Sa~eV~~vI~~vkPD~V~VELc 125 (299)
...-.+++...|++.+||+|+|.=+
T Consensus 13 ~~~~~~~l~~~i~~~~~DIi~lQE~ 37 (228)
T d1wdua_ 13 KKLATAELAIEAATRKAAIALIQEP 37 (228)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESC
T ss_pred ChHHHHHHHHHHHhcCCCEEEEECC
Confidence 4455678899999999999998643
No 23
>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=20.59 E-value=59 Score=27.80 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=27.2
Q ss_pred CCcEEEEEec-cccChhHHHHHHHH----HHhcCCCeEEEe
Q 022310 88 EPENIWLIGT-THLSQDSAADVERV----VRAIKPDNVVVE 123 (299)
Q Consensus 88 ~~~eIyLVGT-AHVS~~Sa~eV~~v----I~~vkPD~V~VE 123 (299)
++-++.++|| +..+++.++++-+. +++.+||.|++=
T Consensus 30 edi~vrv~gsGaKM~pe~~e~~~~~~~~~~~~~~pDf~i~i 70 (282)
T d1u6ka1 30 EDVEFRVVGTSVKMDPECVEAAVEMALDIAEDFEPDFIVYG 70 (282)
T ss_dssp SSEEEEEEECTTCCSHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCceEEEeccccCcCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4557899998 45777778765554 899999998774
No 24
>d3bida1 d.348.1.1 (A:1-56) Uncharacterized protein NMB1088 {Neisseria meningitidis [TaxId: 487]}
Probab=20.31 E-value=69 Score=20.84 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCcEEEEEeccccChhHHHHHHHHHHhcCCCeEEEee
Q 022310 88 EPENIWLIGTTHLSQDSAADVERVVRAIKPDNVVVEL 124 (299)
Q Consensus 88 ~~~eIyLVGTAHVS~~Sa~eV~~vI~~vkPD~V~VEL 124 (299)
.+.+|...+=.+.|+.+++.-=+.|++.-|+..++||
T Consensus 20 ~Ng~vIa~Se~Y~sk~~a~~gI~sVk~na~~a~v~dl 56 (56)
T d3bida1 20 ANHEIIAQGEGYTSKQNCQHAVDLLKSTTAATPVKEV 56 (56)
T ss_dssp TTSCEEEECCCBSCHHHHHHHHHHHHTCCTTSCEEEC
T ss_pred CCCCEEEecCCcCCHHHHHHHHHHHHHhCCCCeeeeC
Confidence 4566777888899999999999999999999999987
Done!