BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022312
(299 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|18399235|ref|NP_565463.1| large subunit ribosomal protein L4 [Arabidopsis thaliana]
gi|18252969|gb|AAL62411.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
gi|20197568|gb|AAD24390.2| 50S ribosomal protein L4 [Arabidopsis thaliana]
gi|25084070|gb|AAN72167.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
gi|330251866|gb|AEC06960.1| large subunit ribosomal protein L4 [Arabidopsis thaliana]
Length = 300
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/281 (74%), Positives = 236/281 (83%), Gaps = 18/281 (6%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPL----KSGLSF 56
MA ++SRR+ R FGSFSA GR SP+L++ + SG+ L L K G++
Sbjct: 1 MAASISRRIFRTFGSFSALGRSSSPNLSANT-----------SGNGLASLTNDLKYGMAL 49
Query: 57 LASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVL 116
L++RK ST+ILTPD S FPSDLL KKTVLTPD TIG +QDLVIPVTNF NE+KGFMVL
Sbjct: 50 LSNRKLSTSILTPDDS---FPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQNEEKGFMVL 106
Query: 117 AGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176
AGDVFDVPIRKDIIH VVRWQLAKRQQGTHSTKT+SEVSGTG+KPW QKGTGRARHGTLR
Sbjct: 107 AGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLR 166
Query: 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI 236
GPQFRGG MHGPKPRSHAIK+NK+VRRLGLKIAL+ARAAEGKLLVF+DL +P+HKTK I
Sbjct: 167 GPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNI 226
Query: 237 VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
VNYYNQMENTKKVL+ +GG I EKLKLATQNLHYVN++PS+
Sbjct: 227 VNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSI 267
>gi|21553676|gb|AAM62769.1| 50S ribosomal protein L4 [Arabidopsis thaliana]
Length = 300
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/281 (74%), Positives = 236/281 (83%), Gaps = 18/281 (6%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPL----KSGLSF 56
MA ++SRR+ R FGSFSA GR SP+L++ + SG+ L L K G++
Sbjct: 1 MAASISRRIFRTFGSFSALGRSSSPNLSANT-----------SGNGLASLTNDLKYGMAL 49
Query: 57 LASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVL 116
L++RK ST+ILTPD S FPSDLL KKTVLTPD TIG +QDLVIPVTNF NE+KGFMVL
Sbjct: 50 LSNRKLSTSILTPDDS---FPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQNEEKGFMVL 106
Query: 117 AGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176
AGDVFDVPIRKDIIH VVRWQLAKRQQGTHSTKT+SEVSGTG+KPW QKGTGRARHGTLR
Sbjct: 107 AGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLR 166
Query: 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI 236
GPQFRGG MHGPKPRSHAIK+NK+VRRLGLKIAL+ARAAEGKLLVF+DL +P+HKTK I
Sbjct: 167 GPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLGLPTHKTKNI 226
Query: 237 VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
VNYYNQMENTKKVL+ +GG I EKLKLATQNLHYVN++PS+
Sbjct: 227 VNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSI 267
>gi|449433990|ref|XP_004134779.1| PREDICTED: 50S ribosomal protein L4-like [Cucumis sativus]
gi|449531047|ref|XP_004172499.1| PREDICTED: 50S ribosomal protein L4-like [Cucumis sativus]
Length = 315
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/282 (73%), Positives = 233/282 (82%), Gaps = 5/282 (1%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDN-LFPLKSGL----S 55
MA++VSRRLLR GS S FG+ S SRS +P ++Y SG + F +S L S
Sbjct: 1 MAISVSRRLLRSVGSLSTFGQCNSSCTMSRSFSNPHEIYGHVSGSSSTFASRSTLLKAGS 60
Query: 56 FLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMV 115
FLASR F T+ILTP+SS AFPS+LL K V + + IGL+QDL+IPVTNF NEDKGFMV
Sbjct: 61 FLASRGFCTSILTPESSNNAFPSELLSAKPVASEERKIGLYQDLMIPVTNFENEDKGFMV 120
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
LAGDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KPW+QKGTGRARHGTL
Sbjct: 121 LAGDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWKQKGTGRARHGTL 180
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
RGPQFRGG TMHGPKPRSHA KLNKKVRRLGL IALSAR AEGKLLVF++L+V +HKTK
Sbjct: 181 RGPQFRGGATMHGPKPRSHAFKLNKKVRRLGLMIALSARVAEGKLLVFDNLDVTTHKTKN 240
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V Y ++MENTKKVLL DGG I EKLKLATQNLHYVNVLPS+
Sbjct: 241 MVKYVSKMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSI 282
>gi|255554769|ref|XP_002518422.1| 50S ribosomal protein L4, putative [Ricinus communis]
gi|223542267|gb|EEF43809.1| 50S ribosomal protein L4, putative [Ricinus communis]
Length = 294
Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/277 (74%), Positives = 231/277 (83%), Gaps = 16/277 (5%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASR 60
MA+++SRR+LR F S PSLT +S R+ S ++ +K+G + LA R
Sbjct: 1 MAVSISRRILRSFRSL--------PSLTHQSFRA--------SHESSSFIKNGAASLACR 44
Query: 61 KFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDV 120
K ST+ILTP SS+ AFPSDLL KT+LTP+ IGLH+DLVIPVTNF NEDKGFMVLAGDV
Sbjct: 45 KLSTSILTPGSSDDAFPSDLLSTKTLLTPEREIGLHEDLVIPVTNFLNEDKGFMVLAGDV 104
Query: 121 FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQF 180
FDVPI+K IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP+RQKGTGRARHGTLRGPQF
Sbjct: 105 FDVPIKKHIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPYRQKGTGRARHGTLRGPQF 164
Query: 181 RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYY 240
RGG TMHGPKPRSHAIK NKKVRRLGLKIAL+ARAAEGKLLVFEDLE+P+HKTK IVNY
Sbjct: 165 RGGATMHGPKPRSHAIKCNKKVRRLGLKIALTARAAEGKLLVFEDLEIPTHKTKNIVNYV 224
Query: 241 NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
QME TKK+LL DGG I+EKLKLA QNLHYVNVLPS+
Sbjct: 225 KQMEETKKLLLVDGGPINEKLKLAAQNLHYVNVLPSI 261
>gi|359494830|ref|XP_003634850.1| PREDICTED: 50S ribosomal protein L4-like [Vitis vinifera]
gi|297741766|emb|CBI32995.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/282 (73%), Positives = 224/282 (79%), Gaps = 5/282 (1%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLS----- 55
MA+++SRRLLR FG FG SP + R+ L S D LF S
Sbjct: 1 MAVSISRRLLRTFGPSRVFGHCNSPMIMCPLFRTSDALCGLVSQDGLFSTDSSCKTGSSF 60
Query: 56 FLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMV 115
+ +TTILTP+SS AFP +LL KTVLTP+ T G +QDLVIPVTNF NEDKGFMV
Sbjct: 61 LSSRSLSTTTILTPESSGVAFPPELLSTKTVLTPERTPGHYQDLVIPVTNFHNEDKGFMV 120
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
LAGDVFDVPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KPWRQKGTGRARHGTL
Sbjct: 121 LAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRARHGTL 180
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
RGPQFRGG MHGPKPRSHAIKLNKKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK
Sbjct: 181 RGPQFRGGAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKN 240
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
IVNY +MENTKK+LL DGG I EKLKLATQNLHYVNVLPS+
Sbjct: 241 IVNYVKEMENTKKLLLVDGGPITEKLKLATQNLHYVNVLPSI 282
>gi|297836242|ref|XP_002886003.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata]
gi|297331843|gb|EFH62262.1| 50S ribosomal protein L4 [Arabidopsis lyrata subsp. lyrata]
Length = 297
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/281 (71%), Positives = 231/281 (82%), Gaps = 21/281 (7%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKS----GLSF 56
MA ++S R+ R FGS GR SP+L++ + SG+ L L S G++
Sbjct: 1 MAASISARIFRTFGSL---GRCSSPNLSANT-----------SGNGLSSLTSDLKYGMAL 46
Query: 57 LASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVL 116
L++RK ST ILTPD + FPSDLL KKTVLTPD TIG +QDLVIPVTNF +E+KGFMVL
Sbjct: 47 LSNRKLSTCILTPDDT---FPSDLLTKKTVLTPDRTIGQYQDLVIPVTNFQSEEKGFMVL 103
Query: 117 AGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176
AGDVFDVPIRKDIIH VVRWQLAKRQQGTHSTKT+SEVSGTG+KPW QKGTGRARHGTLR
Sbjct: 104 AGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKGTGRARHGTLR 163
Query: 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI 236
GPQFRGG MHGPKPRSHAIK+NK+VRRLGLKIAL+ARAAEGKLLVF+DL +P+HKTK I
Sbjct: 164 GPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDDLALPTHKTKNI 223
Query: 237 VNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
VNYYNQMENTKKVL+ +GG I EKLKLATQNLHYVN++PS+
Sbjct: 224 VNYYNQMENTKKVLVVEGGPIDEKLKLATQNLHYVNIIPSI 264
>gi|363807964|ref|NP_001242456.1| uncharacterized protein LOC100804238 [Glycine max]
gi|255635327|gb|ACU18017.1| unknown [Glycine max]
Length = 312
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/280 (71%), Positives = 228/280 (81%), Gaps = 4/280 (1%)
Query: 1 MALTVSRRLLR-RFGSFSAFGR--YESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFL 57
MA +S+R+LR S + GR ++SPS SI P D+ + SG+ + P L
Sbjct: 1 MAALISKRILRCSSWSLHSLGRCYFDSPSAGFASIYKPRDVCSSLSGERMLPADRSLVRS 60
Query: 58 ASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLA 117
R+FST+ILTP + + AFPSDLL KKT+ T + TIGL QDL+IPVTNF NEDKG+MV
Sbjct: 61 MVRQFSTSILTPGADDSAFPSDLLSKKTLATSERTIGLCQDLLIPVTNFHNEDKGYMVFP 120
Query: 118 GDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
GDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KPW QKGTGRARHG+LRG
Sbjct: 121 GDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRG 180
Query: 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIV 237
PQFRGG TMHGPKPRSHA K+NKKVR LGLKIALSARAAEGKLLVFEDLEVP+HKTK IV
Sbjct: 181 PQFRGGATMHGPKPRSHAFKVNKKVRCLGLKIALSARAAEGKLLVFEDLEVPTHKTKNIV 240
Query: 238 NYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
NYYNQME+TKK+LL D G I EKLKL+TQNLHYVNVLPS+
Sbjct: 241 NYYNQMEDTKKLLLVD-GTIDEKLKLSTQNLHYVNVLPSI 279
>gi|356532241|ref|XP_003534682.1| PREDICTED: 50S ribosomal protein L4-like [Glycine max]
Length = 310
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/280 (71%), Positives = 226/280 (80%), Gaps = 6/280 (2%)
Query: 1 MALTVSRRLLR-RFGSFSAFGR--YESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFL 57
MA +S+R+LR GS + GR ++SP S I P D+ SG+ +F L
Sbjct: 1 MAALISKRILRCSSGSLHSLGRCYFDSPGFAS--IYKPRDVCGGLSGERMFSADRSLVGS 58
Query: 58 ASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLA 117
R+FST+ILTP + AFPSDLL KK + T + TIGL QDL+IPVTNF NEDKG+MVL
Sbjct: 59 MVRQFSTSILTPGDDDSAFPSDLLSKKILATSERTIGLCQDLLIPVTNFHNEDKGYMVLP 118
Query: 118 GDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
GDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KPW QKGTGRARHG+LRG
Sbjct: 119 GDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRG 178
Query: 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIV 237
PQFRGG TMHGPKPRSHA K+NKKVRRLGLKIALSARAAEGKLLVFEDL VP+HKTK IV
Sbjct: 179 PQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALSARAAEGKLLVFEDLAVPTHKTKNIV 238
Query: 238 NYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
NYYNQME+TKK+LL D G I EKLKL+TQNLHYVNVLPS+
Sbjct: 239 NYYNQMEDTKKLLLVD-GAIDEKLKLSTQNLHYVNVLPSI 277
>gi|147767815|emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera]
Length = 278
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/215 (85%), Positives = 195/215 (90%)
Query: 63 STTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFD 122
+TT+LTP+SS AFP +LL KTVLTP+ T G +QDLVIPVTNF NEDKGFM LAGDVFD
Sbjct: 31 TTTMLTPESSGVAFPPELLSTKTVLTPERTPGHYQDLVIPVTNFHNEDKGFMXLAGDVFD 90
Query: 123 VPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRG 182
VPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRG
Sbjct: 91 VPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRG 150
Query: 183 GTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ 242
G MHGPKPRSHAIKLNKKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK IVNY +
Sbjct: 151 GAIMHGPKPRSHAIKLNKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVNYVKE 210
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
MEN KK+LL DGG I EKLKLATQNLHYVNVLPS+
Sbjct: 211 MENXKKLLLVDGGPITEKLKLATQNLHYVNVLPSI 245
>gi|224118096|ref|XP_002331557.1| predicted protein [Populus trichocarpa]
gi|222873781|gb|EEF10912.1| predicted protein [Populus trichocarpa]
Length = 285
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/283 (68%), Positives = 217/283 (76%), Gaps = 37/283 (13%)
Query: 1 MALTVSRRLLRRFGSFSAFGRY-ESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLAS 59
MAL++SRR+LR FGS S FGR +S SLT
Sbjct: 1 MALSISRRVLRSFGSLSGFGRCGDSSSLT------------------------------- 29
Query: 60 RKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGD 119
R+ ST+ +T +S++G+FPSDLL K V+TP IGL+QDLVIPVTNF NEDKG MVLAGD
Sbjct: 30 RQLSTSNVTSESTDGSFPSDLLSAKNVVTPQREIGLYQDLVIPVTNFHNEDKGLMVLAGD 89
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+RQKGTGRARHGTLRGPQ
Sbjct: 90 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYRQKGTGRARHGTLRGPQ 149
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSA-----RAAEGKLLVFEDLEVPSHKTK 234
FRGG MHGPKPRSHA KLNKKVRRLGLKIAL+A +LLVFEDLEVP+HKTK
Sbjct: 150 FRGGAVMHGPKPRSHAFKLNKKVRRLGLKIALTAPIILIEFLNAQLLVFEDLEVPTHKTK 209
Query: 235 FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
IVNY +MENTKK+L+ DGG I+EKLKLATQNLHYVN+LPS+
Sbjct: 210 NIVNYVIEMENTKKLLVVDGGPINEKLKLATQNLHYVNLLPSI 252
>gi|357466353|ref|XP_003603461.1| 50S ribosomal protein L4 [Medicago truncatula]
gi|355492509|gb|AES73712.1| 50S ribosomal protein L4 [Medicago truncatula]
Length = 366
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 187/280 (66%), Positives = 219/280 (78%), Gaps = 19/280 (6%)
Query: 1 MALTVSRRLLRRFGSFSAFGR--YESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLA 58
MA +S+RLLR + S + GR + SPS LY G+ L + L+
Sbjct: 48 MASFISKRLLRSYQSLHSLGRRCFNSPS--------AAGLY----GERLISAQRILTGSI 95
Query: 59 SRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAG 118
+++FST+ + E AFPSDLL KK + T + IGL QDL+IPVTNF NEDKGFMVLAG
Sbjct: 96 TQRFSTS-----TDEAAFPSDLLSKKPLATSERDIGLCQDLLIPVTNFHNEDKGFMVLAG 150
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
DVFD+PIRKDI+HRVV WQ AKRQQGTHSTKTISEVSGTG+KPW QKGTGRARHG+LRGP
Sbjct: 151 DVFDMPIRKDIVHRVVLWQRAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRGP 210
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
QFRGG HGPKPRSHA KLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP+HKTK +N
Sbjct: 211 QFRGGEAKHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPTHKTKNFLN 270
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVV 278
++NQ+E+TKK+L+ D G ++EKLKLATQNLHYVN+LPS+V
Sbjct: 271 FFNQLEDTKKLLIVDDGPVNEKLKLATQNLHYVNLLPSIV 310
>gi|388496888|gb|AFK36510.1| unknown [Lotus japonicus]
Length = 305
Score = 352 bits (903), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 182/280 (65%), Positives = 211/280 (75%), Gaps = 11/280 (3%)
Query: 1 MALTVSRRLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLAS- 59
MA +S+RLLR S + GR R D+ + SG+ F + LA
Sbjct: 1 MAALISKRLLRSSESLHSLGR--------RCFHQSRDICSSLSGERRFSAQRPGLLLARS 52
Query: 60 --RKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLA 117
++F T++ P EGAFPSDLL K + T + IGL QDL+IPVTNF NEDKG MVLA
Sbjct: 53 MIQRFCTSVSVPGYHEGAFPSDLLSNKPLATSERDIGLCQDLLIPVTNFHNEDKGLMVLA 112
Query: 118 GDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
GDVFDVPIRKDIIHRVVRWQLA+RQQGTHSTKT+SEV GTG+K ++QKG G+ARHG+ R
Sbjct: 113 GDVFDVPIRKDIIHRVVRWQLARRQQGTHSTKTVSEVRGTGRKMYKQKGLGKARHGSQRV 172
Query: 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIV 237
FRGG MHGPKPRSHA KLNKKVRRLGLKIALSARAAEGKLLVFEDL+V +HKTK IV
Sbjct: 173 HLFRGGAAMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFEDLDVLTHKTKNIV 232
Query: 238 NYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
NY+ QME++KK+LL DGG I+EKLKLATQNLHYVNVLPS+
Sbjct: 233 NYFKQMEDSKKLLLVDGGPINEKLKLATQNLHYVNVLPSI 272
>gi|222616220|gb|EEE52352.1| hypothetical protein OsJ_34399 [Oryza sativa Japonica Group]
Length = 353
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 172/214 (80%), Positives = 186/214 (86%), Gaps = 1/214 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P ++E P +LL KTV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 108 STLLAP-ANEVLIPQELLSSKTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 166
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTGRARHGTLRGPQFRGG
Sbjct: 167 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYNQKGTGRARHGTLRGPQFRGG 226
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK IV Y QM
Sbjct: 227 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVQYIGQM 286
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
E TKKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 287 EGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 320
>gi|115486043|ref|NP_001068165.1| Os11g0585700 [Oryza sativa Japonica Group]
gi|77551649|gb|ABA94446.1| ribosomal protein L4/L1 family protein, expressed [Oryza sativa
Japonica Group]
gi|113645387|dbj|BAF28528.1| Os11g0585700 [Oryza sativa Japonica Group]
Length = 286
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/214 (80%), Positives = 186/214 (86%), Gaps = 1/214 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P ++E P +LL KTV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 41 STLLAP-ANEVLIPQELLSSKTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 99
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTGRARHGTLRGPQFRGG
Sbjct: 100 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYNQKGTGRARHGTLRGPQFRGG 159
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK IV Y QM
Sbjct: 160 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVQYIGQM 219
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
E TKKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 220 EGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 253
>gi|242072798|ref|XP_002446335.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor]
gi|241937518|gb|EES10663.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor]
Length = 333
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 172/214 (80%), Positives = 187/214 (87%), Gaps = 1/214 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P SE P +LL +TV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 88 STLLAP-PSEVLIPPELLSSRTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 146
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP++QKGTGRARHGTLRGPQFRGG
Sbjct: 147 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYKQKGTGRARHGTLRGPQFRGG 206
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKTK IV Y QM
Sbjct: 207 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKNIVQYIRQM 266
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++TKKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 267 DDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 300
>gi|242032629|ref|XP_002463709.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor]
gi|241917563|gb|EER90707.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor]
Length = 294
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 172/214 (80%), Positives = 187/214 (87%), Gaps = 1/214 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P SE P +LL +TV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 49 STLLAP-PSEVLIPPELLSSRTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 107
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP++QKGTGRARHGTLRGPQFRGG
Sbjct: 108 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYKQKGTGRARHGTLRGPQFRGG 167
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKTK IV Y QM
Sbjct: 168 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKNIVQYIRQM 227
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++TKKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 228 DDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 261
>gi|326524247|dbj|BAK00507.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 289
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 175/254 (68%), Positives = 199/254 (78%), Gaps = 4/254 (1%)
Query: 24 SPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASRKFSTTILTPDSSEGAFPSDLLLK 83
+ S+ R++ PP L G + L L + S +ST L ++E P +LL
Sbjct: 7 AASILRRAVACPPQL--GAVGRDTSLLAKILPNVYSNGYST--LMAPANEVLIPPELLSS 62
Query: 84 KTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQ 143
KTV TPD +G ++DLV VTNF NEDKGFMVL GDVFDVPIRKDI+HRVVRWQLAKRQQ
Sbjct: 63 KTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQ 122
Query: 144 GTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVR 203
GTHSTKTISEVSGTG+KP++QKGTGRARHGTLRG QFRGG TMHGPKPRSHA KL KKVR
Sbjct: 123 GTHSTKTISEVSGTGRKPYKQKGTGRARHGTLRGCQFRGGATMHGPKPRSHAFKLQKKVR 182
Query: 204 RLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL 263
RLGLKIALSAR AEGKL +FEDLEVPSHKTK IV Y QM++TKK+LL DGG I +KLKL
Sbjct: 183 RLGLKIALSARTAEGKLCIFEDLEVPSHKTKNIVQYIKQMDDTKKILLVDGGDIDKKLKL 242
Query: 264 ATQNLHYVNVLPSV 277
ATQNLHYVNV+PS+
Sbjct: 243 ATQNLHYVNVIPSI 256
>gi|357156335|ref|XP_003577421.1| PREDICTED: 50S ribosomal protein L4-like [Brachypodium distachyon]
Length = 289
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 166/214 (77%), Positives = 185/214 (86%), Gaps = 1/214 (0%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P ++EG PS+LL KTV TPD +G ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 44 STLLAP-ANEGMIPSELLSSKTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDV 102
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTGRARHGTLRG QFRGG
Sbjct: 103 PIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYAQKGTGRARHGTLRGCQFRGG 162
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHA KL KKVRRLGLKIALSAR AEGKL +F+DL++PSHKTK IV Y QM
Sbjct: 163 ATMHGPKPRSHAFKLQKKVRRLGLKIALSARTAEGKLCIFDDLDLPSHKTKNIVQYIKQM 222
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ TKKVLL DGG I +KLKLATQNLHYVNV+PS+
Sbjct: 223 DETKKVLLVDGGDIDKKLKLATQNLHYVNVIPSI 256
>gi|226491762|ref|NP_001147335.1| LOC100280943 [Zea mays]
gi|195610184|gb|ACG26922.1| 50S ribosomal protein L4 [Zea mays]
Length = 293
Score = 340 bits (871), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 181/270 (67%), Positives = 202/270 (74%), Gaps = 11/270 (4%)
Query: 8 RLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASRKFSTTIL 67
R L R S R + T+ S+ PP C NL G F +ST +
Sbjct: 2 RALARAASL--LRRASGSAPTTASLYHPPRNVGPCLVKNL----PGFFF---NGYSTLLA 52
Query: 68 TPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRK 127
P+ E P +LL +TV TPD +G ++DLV VTNF NEDKGFMVL GDVFDVPIRK
Sbjct: 53 PPN--EVLIPPELLSSRTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDVPIRK 110
Query: 128 DIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMH 187
DI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTG+ARHGTLRG QFRGG TMH
Sbjct: 111 DIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHGTLRGAQFRGGATMH 170
Query: 188 GPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTK 247
GPKPRSHAIKL KKVRRLGLKIALSAR AEGKLL+FEDLEVPSHKTK IV Y QM+++K
Sbjct: 171 GPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLIFEDLEVPSHKTKNIVQYIRQMDDSK 230
Query: 248 KVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 231 KVLLVDGGDIDKKLKLATQNLHYVNVLPSI 260
>gi|414873447|tpg|DAA52004.1| TPA: 50S ribosomal protein L4 [Zea mays]
Length = 293
Score = 339 bits (870), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 181/270 (67%), Positives = 202/270 (74%), Gaps = 11/270 (4%)
Query: 8 RLLRRFGSFSAFGRYESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFLASRKFSTTIL 67
R L R S R + T+ S+ PP C NL G F +ST +
Sbjct: 2 RALARAASL--LRRAAGSAPTTASLYHPPRNVGPCLVKNL----PGFFF---NGYSTLLA 52
Query: 68 TPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRK 127
P+ E P +LL +TV TPD +G ++DLV VTNF NEDKGFMVL GDVFDVPIRK
Sbjct: 53 PPN--EVLIPPELLSSRTVWTPDRELGQYEDLVARVTNFHNEDKGFMVLDGDVFDVPIRK 110
Query: 128 DIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMH 187
DI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTG+ARHGTLRG QFRGG TMH
Sbjct: 111 DIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHGTLRGAQFRGGATMH 170
Query: 188 GPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTK 247
GPKPRSHAIKL KKVRRLGLKIALSAR AEGKLL+FEDLEVPSHKTK IV Y QM+++K
Sbjct: 171 GPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLIFEDLEVPSHKTKNIVQYIRQMDDSK 230
Query: 248 KVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 231 KVLLVDGGDIDKKLKLATQNLHYVNVLPSI 260
>gi|218186003|gb|EEC68430.1| hypothetical protein OsI_36619 [Oryza sativa Indica Group]
Length = 273
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 161/214 (75%), Positives = 174/214 (81%), Gaps = 14/214 (6%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDV 123
+T+L P ++E P +LL KTV TPD ++DLV VTNF NEDKGFMVL GDVFDV
Sbjct: 41 STLLAP-ANEVLIPQELLSSKTVWTPDRQ---YEDLVARVTNFHNEDKGFMVLDGDVFDV 96
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
PIRKDI+HRV GTHSTKTISEVSGTG+KP+ QKGTGRARHGTLRGPQFRGG
Sbjct: 97 PIRKDIVHRV----------GTHSTKTISEVSGTGRKPYNQKGTGRARHGTLRGPQFRGG 146
Query: 184 TTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM 243
TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVF+DLEVPSHKTK IV Y QM
Sbjct: 147 ATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVQYIGQM 206
Query: 244 ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
E TKKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 207 EGTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 240
>gi|294463048|gb|ADE77062.1| unknown [Picea sitchensis]
Length = 323
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 152/238 (63%), Positives = 183/238 (76%), Gaps = 6/238 (2%)
Query: 40 VACSGDNLFPLKSGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDL 99
A SG+ ++ S +++R + + TP + PS+LL + G +DL
Sbjct: 59 AATSGNGMW------SLISARGLCSFVPTPQTDLVISPSELLAAQAAYAAQRVQGKFEDL 112
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ VTN NEDKG +VLAGDVFDVPIRKDIIHRVVRWQLAKR+QGTHSTKTISEVSGTG+
Sbjct: 113 TLRVTNMRNEDKGMIVLAGDVFDVPIRKDIIHRVVRWQLAKRRQGTHSTKTISEVSGTGR 172
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPW QKGTG+ARHGTLRGPQFR G TMHGPKPRSHAIKL KKVRRLGLKIALSARAAEGK
Sbjct: 173 KPWPQKGTGKARHGTLRGPQFRHGATMHGPKPRSHAIKLQKKVRRLGLKIALSARAAEGK 232
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+VF+ ++ +HKTK + Y +Q+EN KK+LL +GG +++KL LATQNLHY NVLPS+
Sbjct: 233 LMVFDTFDLTTHKTKEVAKYVSQLENCKKILLVEGGPVNKKLGLATQNLHYANVLPSI 290
>gi|255635335|gb|ACU18021.1| unknown [Glycine max]
Length = 224
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 157/226 (69%), Positives = 177/226 (78%), Gaps = 5/226 (2%)
Query: 1 MALTVSRRLLR-RFGSFSAFGR--YESPSLTSRSIRSPPDLYVACSGDNLFPLKSGLSFL 57
MA +S+R+LR GS + GR ++SP S I P D+ SG+ +F L
Sbjct: 1 MAALISKRILRCSSGSLHSLGRCYFDSPGFAS--IYKPRDVCGGLSGERMFSADRSLVGS 58
Query: 58 ASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLA 117
R+FST+ILTP + AFPSDLL KK + T + TIGL QDL+IPVTNF NEDKG+MVL
Sbjct: 59 MVRQFSTSILTPGDDDSAFPSDLLSKKILATSERTIGLCQDLLIPVTNFHNEDKGYMVLP 118
Query: 118 GDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
GDVFD+PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG+KPW QKGTGRARHG+LRG
Sbjct: 119 GDVFDLPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWNQKGTGRARHGSLRG 178
Query: 178 PQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
PQFRGG TMHGPKPRSHA K+NKKVRRLGLKIALSARAAEGKLL F
Sbjct: 179 PQFRGGATMHGPKPRSHAFKVNKKVRRLGLKIALSARAAEGKLLSF 224
>gi|218186871|gb|EEC69298.1| hypothetical protein OsI_38360 [Oryza sativa Indica Group]
Length = 197
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/164 (87%), Positives = 153/164 (93%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
MVL GDVFDVPIRKDI+HRVVRWQLAKRQQGTHSTK ISEVSGTG+KP++QKGTGRARHG
Sbjct: 1 MVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKIISEVSGTGRKPYKQKGTGRARHG 60
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
TLRGPQFRGG TMHGPKPRSH IKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKT
Sbjct: 61 TLRGPQFRGGATMHGPKPRSHTIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKT 120
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
K +V+Y +QME+TKKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 121 KNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 164
>gi|223944103|gb|ACN26135.1| unknown [Zea mays]
Length = 197
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 141/164 (85%), Positives = 151/164 (92%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
MVL GDVFDVPIRKDI+HRVVRWQLAKRQQGTHSTKTISEVSGTG+KP+ QKGTG+ARHG
Sbjct: 1 MVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHG 60
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
TLRG QFRGG TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLL+FEDLEVPSHKT
Sbjct: 61 TLRGAQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLIFEDLEVPSHKT 120
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
K IV Y QM+++KKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 121 KNIVQYIRQMDDSKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 164
>gi|168041144|ref|XP_001773052.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675599|gb|EDQ62092.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 269
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/184 (64%), Positives = 142/184 (77%), Gaps = 1/184 (0%)
Query: 94 GLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISE 153
G +D+ + VTNF +EDKG LAGDVFDVPIR D++HRVVRWQLAKR+QGT STK I E
Sbjct: 52 GQLKDVEVKVTNFQSEDKGLATLAGDVFDVPIRPDVVHRVVRWQLAKRRQGTASTKGIHE 111
Query: 154 VSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSA 213
VSGTG+KP QKG+GRARHG+LRGPQFRGG T HGPKPRSH I L K+VRRLGLK+ALS+
Sbjct: 112 VSGTGRKPGPQKGSGRARHGSLRGPQFRGGATQHGPKPRSHEIGLQKQVRRLGLKVALSS 171
Query: 214 RAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGG-CIHEKLKLATQNLHYVN 272
R AEGKL VF+ +E P+ KT+ + +E KKVL+ D ++E L AT NLHYVN
Sbjct: 172 RVAEGKLKVFDSVEPPTLKTREMERLIADIEGCKKVLIVDDAETVNESLCRATGNLHYVN 231
Query: 273 VLPS 276
VLP+
Sbjct: 232 VLPA 235
>gi|77555479|gb|ABA98275.1| ribosomal protein L4/L1 family protein [Oryza sativa Japonica
Group]
Length = 288
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/217 (58%), Positives = 152/217 (70%), Gaps = 17/217 (7%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKG---FMVLAGDV 120
+T++TP S E P +LL +TV TP+ IG ++DLV +TNF + +MV+
Sbjct: 53 STLVTP-SDEVLVPPELLSSRTVGTPERKIGQYEDLVARITNFTMRIRATWCWMVMY--- 108
Query: 121 FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQF 180
++ + R + G + + KP++QKGTGRARHGTLRGPQF
Sbjct: 109 --------LMFQSGRTLFIELYVGNLLNG--NSILCIYIKPYKQKGTGRARHGTLRGPQF 158
Query: 181 RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYY 240
RGG TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKTK +V+Y
Sbjct: 159 RGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKNVVSYI 218
Query: 241 NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+QME+TKKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 219 SQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 255
>gi|297613186|ref|NP_001066789.2| Os12g0488600 [Oryza sativa Japonica Group]
gi|255670313|dbj|BAF29808.2| Os12g0488600 [Oryza sativa Japonica Group]
Length = 346
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/217 (58%), Positives = 152/217 (70%), Gaps = 17/217 (7%)
Query: 64 TTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKG---FMVLAGDV 120
+T++TP S E P +LL +TV TP+ IG ++DLV +TNF + +MV+
Sbjct: 88 STLVTP-SDEVLVPPELLSSRTVGTPERKIGQYEDLVARITNFTMRIRATWCWMVMY--- 143
Query: 121 FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQF 180
++ + R + G + + KP++QKGTGRARHGTLRGPQF
Sbjct: 144 --------LMFQSGRTLFIELYVGNLLNG--NSILCIYIKPYKQKGTGRARHGTLRGPQF 193
Query: 181 RGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYY 240
RGG TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGKLLVFEDLEVPSHKTK +V+Y
Sbjct: 194 RGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGKLLVFEDLEVPSHKTKNVVSYI 253
Query: 241 NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+QME+TKKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 254 SQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 290
>gi|302772867|ref|XP_002969851.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii]
gi|300162362|gb|EFJ28975.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii]
Length = 215
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 142/181 (78%), Gaps = 2/181 (1%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+D+V+PVTN+ EDKG + +AGD+FDVPIRKDI+H VV+WQ AKR++GTHSTKT EV+G
Sbjct: 2 RDVVLPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAG 61
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
+ +K +QKGTG+ARHG+ R PQFRGG HGPKPRS+ KLNKKVRRLGLKIALSAR A
Sbjct: 62 STRKIHKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVA 121
Query: 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVLP 275
E KL++F+++++P+HKT+ ++ + ++VL+ DG + ++ LA +N+ VNV+P
Sbjct: 122 ERKLMLFDNVDLPTHKTRQLMKLVPNL-GCRRVLIVDGVEKMGREITLACRNVKEVNVIP 180
Query: 276 S 276
+
Sbjct: 181 A 181
>gi|302807160|ref|XP_002985293.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii]
gi|300147121|gb|EFJ13787.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii]
Length = 215
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 142/181 (78%), Gaps = 2/181 (1%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+D+V+PVTN+ EDKG + +AGD+FDVPIRKDI+H VV+WQ AKR++GTHSTKT EV+G
Sbjct: 2 RDVVLPVTNWEQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAG 61
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
+ +K +QKGTG+ARHG+ R PQFRGG HGPKPRS+ KLNKKVRRLGLKIALSAR A
Sbjct: 62 STRKINKQKGTGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRRLGLKIALSARVA 121
Query: 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVLP 275
E KL++F+++++P+HKT+ ++ + ++VL+ DG + ++ LA +N+ VNV+P
Sbjct: 122 ERKLMLFDNVDLPTHKTRQLMKLVPNL-GCRRVLIVDGVEKMGREITLACRNVKEVNVIP 180
Query: 276 S 276
+
Sbjct: 181 A 181
>gi|222617092|gb|EEE53224.1| hypothetical protein OsJ_36122 [Oryza sativa Japonica Group]
Length = 227
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 101/118 (85%), Positives = 110/118 (93%)
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
+P++QKGTGRARHGTLRGPQFRGG TMHGPKPRSHAIKL KKVRRLGLKIALSAR AEGK
Sbjct: 77 QPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRRLGLKIALSARTAEGK 136
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
LLVFEDLEVPSHKTK +V+Y +QME+TKKVLL DGG I +KLKLATQNLHYVNVLPS+
Sbjct: 137 LLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGDIDKKLKLATQNLHYVNVLPSI 194
>gi|307110022|gb|EFN58259.1| hypothetical protein CHLNCDRAFT_142203 [Chlorella variabilis]
Length = 322
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/226 (46%), Positives = 140/226 (61%), Gaps = 14/226 (6%)
Query: 78 SDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQ 137
DLLL L GL++DL++P+ + + G + L GD+FDVPIR+DI+HRVVRWQ
Sbjct: 78 EDLLLPAIPLEQQERQGLYRDLIVPLYDLSRQPVGTVTLGGDIFDVPIRRDILHRVVRWQ 137
Query: 138 LAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIK 197
LAKRQQGTH TKT SEV G G+KP QKG+GR+R GT+R PQ+RGG HGP PRSH
Sbjct: 138 LAKRQQGTHKTKTRSEVRGGGRKPRPQKGSGRSRQGTIRAPQWRGGGVAHGPVPRSHEHD 197
Query: 198 LNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQM---ENTKKVLLCDG 254
L K+VRRLGL+ ALSA+A E +LLV + L+ KTK +++ + + + VLLCD
Sbjct: 198 LPKRVRRLGLQCALSAKAWERRLLVVDSLQPAEPKTKVMLDNVDALLADAPRRSVLLCDS 257
Query: 255 GCIHEK----LKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFDF 296
+ E L+ NL +V+ +P Q L Y L D+
Sbjct: 258 SKLGEDGGEVLRRTAANLPWVDCIP-------QQGLNVYSILQRDY 296
>gi|392383010|ref|YP_005032207.1| 50S ribosomal subunit protein L4 [Azospirillum brasilense Sp245]
gi|356877975|emb|CCC98837.1| 50S ribosomal subunit protein L4 [Azospirillum brasilense Sp245]
Length = 208
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 117/173 (67%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N NE G + LA ++F +P R DI+ R+V WQLAKR+ GTH TKTISE+SGTGKKP+
Sbjct: 7 IKNLNNETVGEIELADEIFGLPSRTDILARMVNWQLAKRRAGTHKTKTISEISGTGKKPY 66
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R QFRGG T+ GP RSH L KKVR+L LK ALS +AAEGKLLV
Sbjct: 67 RQKGTGRARQGSMRSAQFRGGATIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGKLLV 126
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ SHKTK + + T L+ DG ++E A++N+ ++VLP
Sbjct: 127 LDAASAESHKTKELAVRLASLGLT-SALIIDGANLNENFARASRNIPLIDVLP 178
>gi|209964041|ref|YP_002296956.1| 50S ribosomal protein L4 [Rhodospirillum centenum SW]
gi|226730714|sp|B6IRQ7.1|RL4_RHOCS RecName: Full=50S ribosomal protein L4
gi|209957507|gb|ACI98143.1| ribosomal protein L4 [Rhodospirillum centenum SW]
Length = 206
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N NE G + LA +VF +P R+DI+ R+V WQLAKR+QGTH TK ISE++GT KKPW
Sbjct: 5 VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPW 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G+ R PQFRGG + GP RSH L KKVR+L LK ALS +AAEGKL V
Sbjct: 65 RQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGKLFV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
E + +HKTK + + T L+ DG + E A +N+ +++VLP
Sbjct: 125 LEAAKADTHKTKALAAQLKTLGLT-SALIIDGANLDETFVRAARNIPHLDVLPE 177
>gi|427429419|ref|ZP_18919454.1| LSU ribosomal protein L4p (L1e) [Caenispirillum salinarum AK4]
gi|425880612|gb|EKV29308.1| LSU ribosomal protein L4p (L1e) [Caenispirillum salinarum AK4]
Length = 206
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N+ G + LA D+F + +R D++HRVVRWQLAKRQ GTH TK ISE+SGT KK
Sbjct: 3 VDVITLDNKSAGSVELAEDIFGLDVRADLLHRVVRWQLAKRQAGTHKTKGISEISGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G++R PQFRGG T+ GP RSHA L KKVR+LGLK ALSA+A +GKL
Sbjct: 63 PFRQKGTGHARQGSMRSPQFRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKAKDGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + S KTK +V + L+ DG +++ A +N+ V+VLP
Sbjct: 123 VVLDTATSESGKTKDLVKQLAAL-GWSSALIIDGEAVNDGFARAARNIVGVDVLP 176
>gi|374291053|ref|YP_005038088.1| 50S ribosomal protein L4 [Azospirillum lipoferum 4B]
gi|357422992|emb|CBS85835.1| 50S ribosomal subunit protein L4 [Azospirillum lipoferum 4B]
Length = 209
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N NE G + L+ VF +P R D++ R+V WQLAKR+ G H TK ISE+SGT KKP+
Sbjct: 8 IKNLNNEAVGEIELSDAVFGLPTRTDLLARMVNWQLAKRRSGNHKTKGISEISGTTKKPY 67
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKGTGRAR G++R PQFRGG T+ GP RSHA L KKVR+L LK ALSA+AAEGKL+V
Sbjct: 68 SQKGTGRARQGSIRSPQFRGGATIFGPVVRSHAHDLTKKVRKLALKTALSAKAAEGKLIV 127
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
E +HKTK + + T L+ DG + E A++N+ ++VLP
Sbjct: 128 LEAAAAETHKTKELAARLATLGLT-SALIIDGSNLDENFAKASRNIPLIDVLP 179
>gi|288957423|ref|YP_003447764.1| 50S ribosomal protein L4 [Azospirillum sp. B510]
gi|288909731|dbj|BAI71220.1| large subunit ribosomal protein L4 [Azospirillum sp. B510]
Length = 206
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N NE G + L+ VF +P R D++ R+V WQLAKR+ G H TK ISE+SGT KKP+
Sbjct: 5 IKNLNNEAVGEIELSDAVFGLPARTDLLARMVNWQLAKRRSGNHKTKGISEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKGTGRAR G++R PQFRGG T+ GP RSHA +L KKVR+L LK ALSA+AAEGKL+V
Sbjct: 65 GQKGTGRARQGSIRSPQFRGGATIFGPVVRSHAHELTKKVRKLALKTALSAKAAEGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
E +HKTK + + T L+ DG + E A++N+ ++VLP
Sbjct: 125 LEAAAAETHKTKELAARLATLGLT-SALIIDGANLDENFAKASRNIPLIDVLPE 177
>gi|83312228|ref|YP_422492.1| 50S ribosomal protein L4 [Magnetospirillum magneticum AMB-1]
gi|109893601|sp|Q2W2J2.1|RL4_MAGMM RecName: Full=50S ribosomal protein L4
gi|82947069|dbj|BAE51933.1| Ribosomal protein L4 [Magnetospirillum magneticum AMB-1]
Length = 206
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F VP+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG+T+ GP RSHA L KKVR+L LK ALSA+ A+GKL+V
Sbjct: 65 AQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ S KTK + ++ VL DG + LA++N+ YV+VLP+
Sbjct: 125 VDAASAGSPKTKDLAARLGKL-GLSSVLFIDGAAVDGNFALASRNIPYVDVLPT 177
>gi|452965939|gb|EME70956.1| 50S ribosomal protein L4 [Magnetospirillum sp. SO-1]
Length = 206
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/173 (51%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F +P+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGLPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG T+ GP RSHA L KKVR+L LK ALSA+AA+GKL+V
Sbjct: 65 AQKGGGRARQGSLRSAQFRGGATIFGPVVRSHAHDLPKKVRKLALKTALSAKAADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ S KTK + ++ VL DG + LA++N+ YV+VLP
Sbjct: 125 VDSAAAGSPKTKDLAARLGKL-GLSSVLFIDGSAVDGNFALASRNIPYVDVLP 176
>gi|406989325|gb|EKE09117.1| hypothetical protein ACD_16C00213G0040 [uncultured bacterium]
Length = 206
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 117/175 (66%), Gaps = 5/175 (2%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V NF N+ G + L+ ++F P+R+DI+ R+V WQLAKR+ G H+TK IS++SGT KKPW
Sbjct: 5 VRNFDNKKVGEIKLSPEIFSAPLRQDILARMVHWQLAKRRSGNHATKGISQISGTTKKPW 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G+LR PQFRGG + GP RSH+ L KKVR+L LK ALS++AA G LLV
Sbjct: 65 RQKGTGRARQGSLRSPQFRGGAVIFGPVTRSHSYSLPKKVRQLALKTALSSKAASGALLV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMEN--TKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
EDL+ KTK + ++EN + L+ DG ++E N V+VLP
Sbjct: 125 VEDLKAGVKKTK---DLAKKLENLGLRSALIIDGFEVNEDFARTAANFPEVDVLP 176
>gi|83594019|ref|YP_427771.1| 50S ribosomal protein L4 [Rhodospirillum rubrum ATCC 11170]
gi|386350771|ref|YP_006049019.1| 50S ribosomal protein L4 [Rhodospirillum rubrum F11]
gi|109893631|sp|Q2RQW1.1|RL4_RHORT RecName: Full=50S ribosomal protein L4
gi|83576933|gb|ABC23484.1| LSU ribosomal protein L4P [Rhodospirillum rubrum ATCC 11170]
gi|346719207|gb|AEO49222.1| 50S ribosomal protein L4 [Rhodospirillum rubrum F11]
Length = 206
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ VF +P+R D++HR+VRWQLA+RQ GTH TK ISE+SGT KP+
Sbjct: 5 VKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG AR G+ R PQFRGG T+ GP RSHA LNKKVR+LGLK ALSA+A G+L+V
Sbjct: 65 KQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ S KTK ++ + +KVL DG ++EK LA +N+ ++VLP
Sbjct: 125 LDQAISESGKTKDLLAQLKVL-GLEKVLFIDGPEVNEKFALAARNIIGLDVLPQ 177
>gi|23014087|ref|ZP_00053924.1| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum
MS-1]
Length = 206
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 115/173 (66%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F +P+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGLPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG+T+ GP RSHA L KKVR+L LK ALSA+ A+GKL+V
Sbjct: 65 AQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ S KTK + ++ VL DG + LA++N+ YV+VLP
Sbjct: 125 VDNATAGSPKTKDLAARLGKL-GLSSVLFIDGAAVDGNFALASRNIPYVDVLP 176
>gi|389878488|ref|YP_006372053.1| 50S ribosomal protein L4P [Tistrella mobilis KA081020-065]
gi|388529272|gb|AFK54469.1| 50S ribosomal protein L4P [Tistrella mobilis KA081020-065]
Length = 207
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 114/176 (64%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V NED G + LA +VF +P R DI+HR+VR+QLAKR+ GTH KTISE++G+ K
Sbjct: 3 VKVITLDNEDAGTIALADEVFGLPARVDILHRMVRYQLAKRRAGTHKVKTISEIAGSTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARHG R FRGG T+HGP RSHA L KKVRRL LK ALS +A GKL
Sbjct: 63 IYRQKGTGRARHGAKRANIFRGGATVHGPVVRSHAHDLPKKVRRLALKTALSVKAQGGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V ++L+ KTK +V + L G + + +LA +NL ++VLPS
Sbjct: 123 VVVDELKADDAKTKALVARLEKAGLGSSTLFIGGTEVDQGFRLAARNLIGIDVLPS 178
>gi|381165702|ref|ZP_09874929.1| 50S ribosomal subunit protein L4 [Phaeospirillum molischianum DSM
120]
gi|380685192|emb|CCG39741.1| 50S ribosomal subunit protein L4 [Phaeospirillum molischianum DSM
120]
Length = 206
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA VF +P+R DI+ R+V WQLAKR+ G H TK I E+SGT KKP+
Sbjct: 5 VISLENQTVGEIELAETVFGLPVRTDILARMVNWQLAKRRSGNHKTKGIKEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR PQFRGG T+ GP RSHA L KKVR+L LK ALSA+A +GKL V
Sbjct: 65 AQKGGGRARQGSLRSPQFRGGATIFGPVVRSHAHDLPKKVRKLALKTALSAKAGDGKLFV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ V + KT+ + N + VL+ DG + + LA++N+ YV+VLP
Sbjct: 125 LDAANVATPKTRELAARLNAL-GWSSVLVIDGAAVDDNFALASRNIPYVDVLP 176
>gi|83584315|gb|ABC24932.1| plastid 50S ribosomal protein L4 family [Prototheca wickerhamii]
Length = 228
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 102/145 (70%)
Query: 94 GLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISE 153
G DLV+P+ N G L GDVF+ +R DI+HRVVRWQLA RQQGTH TKT +E
Sbjct: 64 GSEADLVVPLLNHRGRSVGSFTLGGDVFNTVVRPDILHRVVRWQLAARQQGTHKTKTRTE 123
Query: 154 VSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSA 213
V G G+KP QKG G +R G++R PQ+RGG HGP PRSHAIKL K +RRLGL+ ALSA
Sbjct: 124 VRGGGRKPRPQKGGGVSRQGSIRAPQWRGGGVAHGPVPRSHAIKLLKSIRRLGLRSALSA 183
Query: 214 RAAEGKLLVFEDLEVPSHKTKFIVN 238
+A EG+L++ + L +P KT+ + +
Sbjct: 184 KAREGRLVIVDTLRLPEAKTRALAD 208
>gi|384261633|ref|YP_005416819.1| 50S ribosomal protein L4 [Rhodospirillum photometricum DSM 122]
gi|378402733|emb|CCG07849.1| 50S ribosomal protein L4 [Rhodospirillum photometricum DSM 122]
Length = 206
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/174 (49%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + G + L+ VF +P+R D++HR+VRWQLAKRQ GTH TK ISE+SGT KP+
Sbjct: 5 VKTLDGANAGSVELSEAVFGLPVRADLLHRLVRWQLAKRQAGTHKTKGISEISGTTAKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG AR G+ R PQFRGG T+ GP RSHA L KKVR+LGLK ALSA+ A G++L+
Sbjct: 65 KQKGTGNARQGSKRSPQFRGGATIFGPVVRSHAHDLPKKVRKLGLKTALSAKVAAGEILI 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ + + KTK ++ + K L DG + EK LA +N+ ++VLPS
Sbjct: 125 LDQAKSENGKTKDLLAQVKAL-GLNKALFIDGPEVDEKFALAARNIVGIDVLPS 177
>gi|347758880|ref|YP_004866442.1| 50S ribosomal protein L4 [Micavibrio aeruginosavorus ARL-13]
gi|347591398|gb|AEP10440.1| 50S ribosomal protein L4 [Micavibrio aeruginosavorus ARL-13]
Length = 207
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/176 (48%), Positives = 111/176 (63%), Gaps = 1/176 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N N++ G + L +F + +R DI+HR+V +QL KR+ GTH TK I EVSGTGKK
Sbjct: 3 VAVKNLQNKEVGQIDLDDAIFGMSVRNDILHRMVHFQLNKRRAGTHDTKEIGEVSGTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG R G+LR PQ RGG + GP PRSHA L KKVR L LK ALSA+A GKL
Sbjct: 63 PFKQKGTGNGRQGSLRSPQMRGGAVIFGPTPRSHATDLPKKVRALALKTALSAKAKAGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V + +HKTK + + T V++C G + AT NL ++VLPS
Sbjct: 123 IVLDQAVADTHKTKPMAEAMKALGLTSAVIVC-GDEVDANFSRATDNLPRIDVLPS 177
>gi|390450920|ref|ZP_10236504.1| 50S ribosomal protein L4 [Nitratireductor aquibiodomus RA22]
gi|389661682|gb|EIM73281.1| 50S ribosomal protein L4 [Nitratireductor aquibiodomus RA22]
Length = 206
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I VT +D G + ++ ++F + R+DI+HRVVRWQLAK+QQGTH TK SE+S TG K
Sbjct: 3 IKVTTLAGKDAGKLKISDEIFGLDPREDILHRVVRWQLAKKQQGTHKTKGRSEISRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARH + R PQFRGG HGP R H+ L KKVR LGLK ALSA+A + L
Sbjct: 63 MYRQKGTGRARHSSARVPQFRGGGRAHGPVVRDHSHDLPKKVRALGLKHALSAKAKDSSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL + KTK +V+ + ++ LL G + K A QN+ ++VLP
Sbjct: 123 IIIDDLALADGKTKSLVDSFAKL-GLSNALLIGGAEVDAGFKRAAQNIANIDVLP 176
>gi|163796918|ref|ZP_02190875.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199]
gi|159177907|gb|EDP62456.1| 50S ribosomal protein L2 [alpha proteobacterium BAL199]
Length = 206
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 115/175 (65%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VTN E G + L +F + R+DI+ RVV WQLAKR+ G H TK+ISE+SGT KK
Sbjct: 3 LEVTNLDAEKTGEIDLDDSIFGLDPRRDILARVVNWQLAKRRSGNHKTKSISEISGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R QFRGG T+HGP RSHA L KKVR+LGLK ALSA+ G+L
Sbjct: 63 PFRQKGTGRARQGSIRATQFRGGQTVHGPVVRSHAHDLPKKVRKLGLKCALSAKLKSGQL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + KTK + + ++ + VL+ DG ++E A +N+ V+VLP
Sbjct: 123 IVLDAASTDEAKTKLLAAKFEKL-GWQSVLVIDGPELNEGFARAARNIPRVDVLP 176
>gi|110634029|ref|YP_674237.1| 50S ribosomal protein L4 [Chelativorans sp. BNC1]
gi|123057912|sp|Q11HQ3.1|RL4_MESSB RecName: Full=50S ribosomal protein L4
gi|110285013|gb|ABG63072.1| LSU ribosomal protein L4P [Chelativorans sp. BNC1]
Length = 206
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT +D G + ++ ++F + R+DI+HRVVRWQLAKRQQGTH K +E++ TG K
Sbjct: 3 LKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARH + R PQFRGG HGP P SHA L KKVR LGLK ALSA+A L
Sbjct: 63 MYRQKGTGRARHSSARAPQFRGGGKAHGPVPHSHAHDLPKKVRALGLKHALSAKAKSANL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL + KTK +V + ++ T L+ G I K A N+ ++VLP
Sbjct: 123 IIVDDLAIKEAKTKALVESFAKLGVT-NALMIGGAEIDAGFKRAAANIPNIDVLP 176
>gi|91205876|ref|YP_538231.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C]
gi|157826765|ref|YP_001495829.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389]
gi|109893633|sp|Q1RHM2.1|RL4_RICBR RecName: Full=50S ribosomal protein L4
gi|166199856|sp|A8GVB5.1|RL4_RICB8 RecName: Full=50S ribosomal protein L4
gi|91069420|gb|ABE05142.1| 50S ribosomal protein L4 [Rickettsia bellii RML369-C]
gi|157802069|gb|ABV78792.1| 50S ribosomal protein L4 [Rickettsia bellii OSU 85-389]
Length = 207
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 114/176 (64%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG +HGP RSHA KL KKVR+LGL ALS + +EGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ + KT +VN N+ + K + DG + LA QN++ V+P +
Sbjct: 125 VIDSLKLETPKTSNLVNILNKFQG-KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQI 179
>gi|407776106|ref|ZP_11123395.1| 50S ribosomal protein L4 [Thalassospira profundimaris WP0211]
gi|407280822|gb|EKF06389.1| 50S ribosomal protein L4 [Thalassospira profundimaris WP0211]
Length = 206
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA D+F + +R+D++HR+V WQLAKR+ GTH K SEVS T KK RQKG+G AR
Sbjct: 14 GKIDLAEDIFGLEVRRDVLHRMVNWQLAKRRAGTHKVKEKSEVSATTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + QFRGG T+HGP+ R HA L KK R+L LK ALSA+A +GKL+V ++ E
Sbjct: 74 HGSRKAAQFRGGGTVHGPRVRDHAHDLTKKFRKLALKTALSAKAKDGKLIVLDNAEFSDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK +V +N++ K L+ DG ++E A +N+ V+VLP +
Sbjct: 134 KTKNLVAVFNKL-GWKSALIIDGAQVNEGFARAARNIPQVDVLPQI 178
>gi|407976941|ref|ZP_11157836.1| 50S ribosomal protein L4 [Nitratireductor indicus C115]
gi|407427668|gb|EKF40357.1| 50S ribosomal protein L4 [Nitratireductor indicus C115]
Length = 206
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 111/175 (63%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT D G + L+ ++F + R+DI+HRVVRWQLAK+Q GTH TK +E++ TG K
Sbjct: 3 LKVTTLAGADAGKLKLSDEIFGLDPREDILHRVVRWQLAKKQAGTHKTKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGLK ALSA+A L
Sbjct: 63 MYKQKGTGRARHSSARVPQFRGGGKAHGPVVRSHAHDLPKKVRALGLKHALSAKAKASNL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL V KTK ++ + ++ LL G I K A QN+ ++VLP
Sbjct: 123 IIVDDLAVSEAKTKILIENFAKL-GLNNALLIGGAEIDAGFKRAAQNIANIDVLP 176
>gi|145351929|ref|XP_001420312.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus
lucimarinus CCE9901]
gi|144580546|gb|ABO98605.1| Putative mitochondrial ribosomal protein L4 [Ostreococcus
lucimarinus CCE9901]
Length = 224
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/184 (47%), Positives = 120/184 (65%), Gaps = 4/184 (2%)
Query: 94 GLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISE 153
G +D V+PV +F E +G + L G +FD P+R D+ HRVVRWQ AK ++G H TK+ E
Sbjct: 12 GRGEDAVVPVYSFDGEARGSVELPGRIFDQPLRVDVAHRVVRWQRAKARKGLHKTKSRGE 71
Query: 154 VSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSA 213
V+G+ +K QKG+GRAR G L+ PQ RGG T HGP RSHA L KKVRR+GLK+ALSA
Sbjct: 72 VAGSTRKVRPQKGSGRARVGNLKAPQMRGGGTAHGPVVRSHAHALPKKVRRMGLKVALSA 131
Query: 214 RAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
+AAEGKL+V + KT+ + ++ T + L GG E ++++ +NL +V V
Sbjct: 132 KAAEGKLIVVDSFAGMEPKTRAMKATLERL--TGDLGLAAGG--DELVRMSARNLPHVEV 187
Query: 274 LPSV 277
LP +
Sbjct: 188 LPQI 191
>gi|407779021|ref|ZP_11126281.1| 50S ribosomal protein L4 [Nitratireductor pacificus pht-3B]
gi|407299305|gb|EKF18437.1| 50S ribosomal protein L4 [Nitratireductor pacificus pht-3B]
Length = 206
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I VT D G + ++ ++F + R DI+HRVVRWQLAK+QQGTH +K +E+S TG K
Sbjct: 3 IKVTTLTGTDAGKLKISDEIFGLEPRDDILHRVVRWQLAKKQQGTHKSKGRAEISRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGLK ALSA+A +L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLKHALSAKAKGSQL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V ++L + KTK +V + ++ LL G + K A QN+ ++VLP
Sbjct: 123 IVIDELALADGKTKALVESFAKL-GLNNALLIGGAEVDAGFKRAAQNIANIDVLP 176
>gi|51473838|ref|YP_067595.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington]
gi|383752614|ref|YP_005427714.1| 50S ribosomal protein L4 [Rickettsia typhi str. TH1527]
gi|383843450|ref|YP_005423953.1| 50S ribosomal protein L4 [Rickettsia typhi str. B9991CWPP]
gi|81610771|sp|Q68W79.1|RL4_RICTY RecName: Full=50S ribosomal protein L4
gi|51460150|gb|AAU04113.1| 50S ribosomal protein L4 [Rickettsia typhi str. Wilmington]
gi|380759257|gb|AFE54492.1| 50S ribosomal protein L4 [Rickettsia typhi str. TH1527]
gi|380760097|gb|AFE55331.1| 50S ribosomal protein L4 [Rickettsia typhi str. B9991CWPP]
Length = 207
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + A GKLL
Sbjct: 65 FKQKGTGNARQGSLRSIQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKCAAGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ L++ KT +VN N+ + + + DG + LAT+N++ ++P +
Sbjct: 125 IINSLKLEKPKTSVLVNLLNKFQG-QSFFIIDGNKVDTNFSLATKNIYNTLIVPQI 179
>gi|402703209|ref|ZP_10851188.1| 50S ribosomal protein L4 [Rickettsia helvetica C9P9]
Length = 207
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L+ D+F V IR DII RV+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLSEDIFAVEFIRDDIIKRVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT ++N N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSALINILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|365854813|ref|ZP_09394878.1| 50S ribosomal protein L4 [Acetobacteraceae bacterium AT-5844]
gi|363719762|gb|EHM03061.1| 50S ribosomal protein L4 [Acetobacteraceae bacterium AT-5844]
Length = 222
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 108/178 (60%), Gaps = 1/178 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ +PV N G + L DVF R DI+ RVV WQLAKR+ GTH K + EVSGT
Sbjct: 17 MQVPVITLDNGKAGDIDLPDDVFATSPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 76
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQFR G +HGP R H LNKKVRRLGL ALS +AAEG
Sbjct: 77 KKPYRQKGTGNARQGSLRAPQFRTGGVVHGPVVRDHGYSLNKKVRRLGLISALSQKAAEG 136
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
KL+V + +E+ + + + K L+ D + E A +NL +VNVLPS
Sbjct: 137 KLIVLDTVELGADAKTSALAAKVKALGWKSALVVD-AAVEEGFGRAVRNLPHVNVLPS 193
>gi|144900885|emb|CAM77749.1| 50S ribosomal protein L4 [Magnetospirillum gryphiswaldense MSR-1]
Length = 205
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 119/175 (68%), Gaps = 2/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + L+ DVF + +R D++HR+V +QL+KR+ GTH TK ISE+SGT KKP+
Sbjct: 5 VISLDNQSVGEIDLSDDVFGLAVRNDLLHRMVSYQLSKRRSGTHKTKGISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG T+ GP RSHA + KKVR+L LK+ALSA+AAEGKL+V
Sbjct: 65 NQKGGGRARQGSLRSAQFRGGATIFGPVVRSHAFDMPKKVRKLALKVALSAKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ + KTK + + + VL+ D G + LA++N+ +V+VLP V
Sbjct: 125 LDNATAAAPKTKALAAQFKAL-GWASVLVID-GAVDGNFALASRNIPHVDVLPEV 177
>gi|407783108|ref|ZP_11130313.1| 50S ribosomal protein L4 [Oceanibaculum indicum P24]
gi|407203579|gb|EKE73565.1| 50S ribosomal protein L4 [Oceanibaculum indicum P24]
Length = 205
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/177 (47%), Positives = 112/177 (63%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N D G + L VF V +R D++ RVV WQLAKR+ G H TK ISE++GT KK
Sbjct: 3 VTVKNLEAADVGAIELDEAVFGVDVRADLLSRVVHWQLAKRRSGNHKTKGISEIAGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTGRAR G+ R PQFRGG T+ GP R H L KKVR+LGLK AL+A+ + KL
Sbjct: 63 PYKQKGTGRARQGSTRSPQFRGGATIFGPVVRDHGYDLPKKVRKLGLKTALAAKLKDEKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V +D ++ KTK + ++ T L+ D G + E LK A NL ++VLP +
Sbjct: 123 IVLDDAKLSEPKTKELKAQLEKLGIT-SALIVD-GAVDENLKKAASNLIGIDVLPQI 177
>gi|67458671|ref|YP_246295.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2]
gi|75536864|sp|Q4UMS8.1|RL4_RICFE RecName: Full=50S ribosomal protein L4
gi|67004204|gb|AAY61130.1| 50S ribosomal protein L4 [Rickettsia felis URRWXCal2]
Length = 207
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDTNFSLAAKNIYNTVIVPQI 179
>gi|383501401|ref|YP_005414760.1| 50S ribosomal protein L4 [Rickettsia australis str. Cutlack]
gi|378932412|gb|AFC70917.1| 50S ribosomal protein L4 [Rickettsia australis str. Cutlack]
Length = 207
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRNDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN ++ + K + DG + LA +N++ + ++P V
Sbjct: 125 VIDSLKLDQPKTSALVNILSKFQG-KSFFVIDGNEVDTNFSLAAKNIYNIVIVPQV 179
>gi|114704485|ref|ZP_01437393.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506]
gi|114539270|gb|EAU42390.1| 50S ribosomal protein L4 [Fulvimarina pelagi HTCC2506]
Length = 206
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + D G + L+ +F + R+DI+HR+VR+QLAKRQQGTHST S+V+ TG K
Sbjct: 3 VTIKKLDGADAGTVTLSEAIFGLDPRQDILHRMVRYQLAKRQQGTHSTLGRSDVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARH T + PQFRGG HGP PRSHAI L KK+R L LK ALSA+A G L
Sbjct: 63 MYRQKGTGRARHSTAKAPQFRGGGIAHGPTPRSHAIDLPKKLRALALKHALSAKAKSGGL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V ++L+ KTK +V + + + L+ G + + A++N+ ++VLP
Sbjct: 123 IVIDELKADEGKTKSMVKSFAGL-GIENALIIGGSELDQNFARASRNIAKIDVLP 176
>gi|157828859|ref|YP_001495101.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933586|ref|YP_001650375.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Iowa]
gi|378721682|ref|YP_005286569.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Colombia]
gi|378723029|ref|YP_005287915.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Arizona]
gi|378724383|ref|YP_005289267.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hauke]
gi|379016071|ref|YP_005292306.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Brazil]
gi|379018168|ref|YP_005294403.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hino]
gi|166199858|sp|A8GT68.1|RL4_RICRS RecName: Full=50S ribosomal protein L4
gi|189042881|sp|B0BUQ9.1|RL4_RICRO RecName: Full=50S ribosomal protein L4
gi|157801340|gb|ABV76593.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908673|gb|ABY72969.1| LSU ribosomal protein L1E (= L4P) [Rickettsia rickettsii str. Iowa]
gi|376324595|gb|AFB21835.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Brazil]
gi|376326706|gb|AFB23945.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Colombia]
gi|376328053|gb|AFB25291.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Arizona]
gi|376330734|gb|AFB27970.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hino]
gi|376333398|gb|AFB30631.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hauke]
Length = 207
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ V+P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVVVPQI 179
>gi|238650971|ref|YP_002916827.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic]
gi|379019482|ref|YP_005295716.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hlp#2]
gi|259491568|sp|C4K2H8.1|RL4_RICPU RecName: Full=50S ribosomal protein L4
gi|238625069|gb|ACR47775.1| 50S ribosomal protein L4 [Rickettsia peacockii str. Rustic]
gi|376332062|gb|AFB29296.1| 50S ribosomal protein L4 [Rickettsia rickettsii str. Hlp#2]
Length = 207
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|341584193|ref|YP_004764684.1| 50S ribosomal protein L4 [Rickettsia heilongjiangensis 054]
gi|350273786|ref|YP_004885099.1| 50S ribosomal protein L4 [Rickettsia japonica YH]
gi|340808418|gb|AEK75006.1| 50S ribosomal protein L4 [Rickettsia heilongjiangensis 054]
gi|348592999|dbj|BAK96960.1| 50S ribosomal protein L4 [Rickettsia japonica YH]
Length = 207
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDVNFSLAAKNIYNTVIVPQI 179
>gi|157804034|ref|YP_001492583.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel]
gi|379023181|ref|YP_005299842.1| 50S ribosomal protein L4 [Rickettsia canadensis str. CA410]
gi|166199857|sp|A8EZL5.1|RL4_RICCK RecName: Full=50S ribosomal protein L4
gi|157785297|gb|ABV73798.1| 50S ribosomal protein L4 [Rickettsia canadensis str. McKiel]
gi|376324119|gb|AFB21360.1| 50S ribosomal protein L4 [Rickettsia canadensis str. CA410]
Length = 207
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP RSHA +L KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGLAHGPIVRSHATQLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT F+VN N+ + + + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSFLVNILNKFQG-QSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|379712749|ref|YP_005301088.1| 50S ribosomal protein L4 [Rickettsia philipii str. 364D]
gi|376329394|gb|AFB26631.1| 50S ribosomal protein L4 [Rickettsia philipii str. 364D]
Length = 207
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|15892928|ref|NP_360642.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7]
gi|34581370|ref|ZP_00142850.1| 50S ribosomal protein L4 [Rickettsia sibirica 246]
gi|374319602|ref|YP_005066101.1| 50S ribosomal protein L4 [Rickettsia slovaca 13-B]
gi|383484334|ref|YP_005393247.1| 50S ribosomal protein L4 [Rickettsia parkeri str. Portsmouth]
gi|383751644|ref|YP_005426745.1| 50S ribosomal protein L4 [Rickettsia slovaca str. D-CWPP]
gi|46577283|sp|Q92GW7.1|RL4_RICCN RecName: Full=50S ribosomal protein L4
gi|15620120|gb|AAL03543.1| 50S ribosomal protein L4 [Rickettsia conorii str. Malish 7]
gi|28262755|gb|EAA26259.1| 50S ribosomal protein L4 [Rickettsia sibirica 246]
gi|360042151|gb|AEV92533.1| 50S ribosomal protein L4 [Rickettsia slovaca 13-B]
gi|378936688|gb|AFC75188.1| 50S ribosomal protein L4 [Rickettsia parkeri str. Portsmouth]
gi|379774658|gb|AFD20014.1| 50S ribosomal protein L4 [Rickettsia slovaca str. D-CWPP]
Length = 207
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|229587008|ref|YP_002845509.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5]
gi|259491567|sp|C3PPA6.1|RL4_RICAE RecName: Full=50S ribosomal protein L4
gi|228022058|gb|ACP53766.1| 50S ribosomal protein L4 [Rickettsia africae ESF-5]
Length = 207
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP++QKG
Sbjct: 10 NEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
TG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLLV + L
Sbjct: 70 TGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLLVIDSL 129
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 130 KLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|15604504|ref|NP_221022.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Madrid E]
gi|383486649|ref|YP_005404329.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. GvV257]
gi|383488057|ref|YP_005405736.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Chernikova]
gi|383488902|ref|YP_005406580.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Katsinyian]
gi|383489742|ref|YP_005407419.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Dachau]
gi|383499882|ref|YP_005413243.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. BuV67-CWPP]
gi|383500719|ref|YP_005414079.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. RpGvF24]
gi|386082522|ref|YP_005999099.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Rp22]
gi|6226007|sp|Q9ZCQ6.1|RL4_RICPR RecName: Full=50S ribosomal protein L4
gi|3861198|emb|CAA15098.1| 50S RIBOSOMAL PROTEIN L4 (rplD) [Rickettsia prowazekii str. Madrid
E]
gi|292572286|gb|ADE30201.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Rp22]
gi|380757014|gb|AFE52251.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. GvV257]
gi|380758416|gb|AFE53652.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. RpGvF24]
gi|380760936|gb|AFE49458.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Chernikova]
gi|380761781|gb|AFE50302.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Katsinyian]
gi|380762628|gb|AFE51148.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. BuV67-CWPP]
gi|380763465|gb|AFE51984.1| 50S ribosomal protein L4 [Rickettsia prowazekii str. Dachau]
Length = 207
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + AE KLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKYAEEKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ + L++ KT +VN ++ + + + DG + LAT+N++ ++P +
Sbjct: 125 IIDSLKLDKPKTSILVNLLSKFQG-QSFFVIDGNKVDINFSLATKNIYNTLIVPQI 179
>gi|157826062|ref|YP_001493782.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford]
gi|166199855|sp|A8GPE9.1|RL4_RICAH RecName: Full=50S ribosomal protein L4
gi|157800020|gb|ABV75274.1| 50S ribosomal protein L4 [Rickettsia akari str. Hartford]
Length = 207
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR D+I +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSH KL KKVR+LGL ALS + AEG+LL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHVTKLPKKVRKLGLIHALSEKFAEGRLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRST 281
V + L++ KT +VN ++ + K + DG + LA +N++ ++P + +
Sbjct: 125 VIDSLKLDQPKTSALVNILSKFQG-KSFFVIDGNEVDTNFSLAAKNIYNTAIVPQ-IGAN 182
Query: 282 TQSFLIYYYFL 292
+ Y Y L
Sbjct: 183 VYDIIRYEYVL 193
>gi|88606786|ref|YP_504893.1| 50S ribosomal protein L4 [Anaplasma phagocytophilum HZ]
gi|109893574|sp|Q2GL58.1|RL4_ANAPZ RecName: Full=50S ribosomal protein L4
gi|88597849|gb|ABD43319.1| ribosomal protein L4 [Anaplasma phagocytophilum HZ]
Length = 208
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N NE G + L VF + R+D++ VV WQLAKR+ GTH K IS++SGT K
Sbjct: 3 VNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP PRSH LNKKVRRLGLK+ALS + A KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAANKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + L+V KT + L+ C E ++ A +NL V++L V
Sbjct: 123 VVLDSLDVDLKKTADAKGVFGNFAGHSSYLVVSESCKEEVVR-ACRNLRGVDLLKCV 178
>gi|239948318|ref|ZP_04700071.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of
Ixodes scapularis]
gi|241563414|ref|XP_002401694.1| ribosomal protein L4, putative [Ixodes scapularis]
gi|215501886|gb|EEC11380.1| ribosomal protein L4, putative [Ixodes scapularis]
gi|239922594|gb|EER22618.1| ribosomal protein L4/L1 family protein [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 207
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + D + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDRNEVDINFSLAAKNIYNTVIVPQI 179
>gi|383482518|ref|YP_005391432.1| 50S ribosomal protein L4 [Rickettsia montanensis str. OSU 85-930]
gi|378934872|gb|AFC73373.1| 50S ribosomal protein L4 [Rickettsia montanensis str. OSU 85-930]
Length = 207
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DI+ +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIVKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|319783321|ref|YP_004142797.1| 50S ribosomal protein L4 [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169209|gb|ADV12747.1| ribosomal protein L4/L1e [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 206
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 114/175 (65%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH TK +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVELSDEIFGLDPREDILQRVVRWQLAKKQQGTHKTKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH +L KKVR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHELPKKVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ ++L++ KTK ++ + + T LL G + + KLA N+ ++VLP
Sbjct: 123 IIIDELKLTEAKTKALIANFATLGLT-NALLIGGAELDKNFKLAATNIPNIDVLP 176
>gi|383312961|ref|YP_005365762.1| 50S ribosomal protein L4 [Candidatus Rickettsia amblyommii str.
GAT-30V]
gi|378931621|gb|AFC70130.1| 50S ribosomal protein L4 [Candidatus Rickettsia amblyommii str.
GAT-30V]
Length = 207
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR+DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIREDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA L KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATTLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTAALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|227821757|ref|YP_002825727.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234]
gi|254803749|sp|C3MAY1.1|RL4_RHISN RecName: Full=50S ribosomal protein L4
gi|227340756|gb|ACP24974.1| 50S ribosomal protein L4 [Sinorhizobium fredii NGR234]
Length = 206
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EV+ TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP
Sbjct: 123 IVLDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIENNFKLAAQNIPNVDVLP 176
>gi|338975038|ref|ZP_08630393.1| LSU ribosomal protein L4p [Bradyrhizobiaceae bacterium SG-6C]
gi|414167350|ref|ZP_11423579.1| 50S ribosomal protein L4 [Afipia clevelandensis ATCC 49720]
gi|338231637|gb|EGP06772.1| LSU ribosomal protein L4p [Bradyrhizobiaceae bacterium SG-6C]
gi|410891167|gb|EKS38965.1| 50S ribosomal protein L4 [Afipia clevelandensis ATCC 49720]
Length = 206
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 115/177 (64%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ ++F + RKD+I RVV WQLAKRQ GTH K +EV TG
Sbjct: 1 MELKVTTLEGKAVGSVQLSDEIFGLEPRKDLIQRVVNWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGLK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYDLPKKVRALGLKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ ++ KTK ++ +++ +E T L+ DG ++ A +N+ +++VLP
Sbjct: 121 GLIVIENADLKDAKTKALLGHFSGLEIT-NALIVDGAEVNNGFAQAARNIPHIDVLP 176
>gi|407771094|ref|ZP_11118457.1| 50S ribosomal protein L4 [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407285983|gb|EKF11476.1| 50S ribosomal protein L4 [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 206
Score = 153 bits (386), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 108/166 (65%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA ++F + +R+DI+HR+V WQLAKR+ GTH K SE+S T KK RQKG+G AR
Sbjct: 14 GNIDLAEEIFGLDVRRDILHRMVNWQLAKRRAGTHKVKEKSEISATTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + QFRGG HGP+ R H+ L KK R+L LK ALSA+A +GKL+V + E
Sbjct: 74 HGSRKAVQFRGGGVAHGPRVRDHSHDLTKKFRKLALKTALSAKAKDGKLIVLDSAEFSDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK +V + ++ K L+ DG I+E A +N+ V+VLP +
Sbjct: 134 KTKNLVAAFAKL-GWKSALIIDGAQINEGFARAARNIPQVDVLPEI 178
>gi|150396208|ref|YP_001326675.1| 50S ribosomal protein L4 [Sinorhizobium medicae WSM419]
gi|166199909|sp|A6U860.1|RL4_SINMW RecName: Full=50S ribosomal protein L4
gi|150027723|gb|ABR59840.1| ribosomal protein L4/L1e [Sinorhizobium medicae WSM419]
Length = 206
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK + + + T L+ G I KLA QN+ V+VLP
Sbjct: 123 IIVDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIEGNFKLAAQNIPNVDVLP 176
>gi|15965110|ref|NP_385463.1| 50S ribosomal protein L4 [Sinorhizobium meliloti 1021]
gi|334315896|ref|YP_004548515.1| 50S ribosomal protein L4 [Sinorhizobium meliloti AK83]
gi|384529068|ref|YP_005713156.1| 50S ribosomal protein L4 [Sinorhizobium meliloti BL225C]
gi|384536652|ref|YP_005720737.1| 50S ribosomal protein L4 [Sinorhizobium meliloti SM11]
gi|407720297|ref|YP_006839959.1| 50S ribosomal protein L4 [Sinorhizobium meliloti Rm41]
gi|418404902|ref|ZP_12978340.1| 50S ribosomal protein L4 [Sinorhizobium meliloti CCNWSX0020]
gi|433613128|ref|YP_007189926.1| 50S ribosomal protein L4, bacterial/organelle [Sinorhizobium
meliloti GR4]
gi|46577284|sp|Q92QG9.1|RL4_RHIME RecName: Full=50S ribosomal protein L4
gi|15074290|emb|CAC45936.1| Probable 50S ribosomal protein L4 [Sinorhizobium meliloti 1021]
gi|333811244|gb|AEG03913.1| ribosomal protein L4/L1e [Sinorhizobium meliloti BL225C]
gi|334094890|gb|AEG52901.1| ribosomal protein L4/L1e [Sinorhizobium meliloti AK83]
gi|336033544|gb|AEH79476.1| 50S ribosomal protein L4 [Sinorhizobium meliloti SM11]
gi|359501166|gb|EHK73790.1| 50S ribosomal protein L4 [Sinorhizobium meliloti CCNWSX0020]
gi|407318529|emb|CCM67133.1| 50S ribosomal protein L4 [Sinorhizobium meliloti Rm41]
gi|429551318|gb|AGA06327.1| 50S ribosomal protein L4, bacterial/organelle [Sinorhizobium
meliloti GR4]
Length = 206
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH +K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL+ ALSA+ +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAKLKAEDI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP
Sbjct: 123 IVIDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIEGNFKLAAQNIPNVDVLP 176
>gi|378825668|ref|YP_005188400.1| 50S ribosomal protein L4 BL4 [Sinorhizobium fredii HH103]
gi|365178720|emb|CCE95575.1| 50S ribosomal protein L4 BL4 [Sinorhizobium fredii HH103]
Length = 206
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RV+RWQLAKRQQGTH K +EV+ TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVIRWQLAKRQQGTHKAKGRAEVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP
Sbjct: 123 IVLDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIESNFKLAAQNIPNVDVLP 176
>gi|340030726|ref|ZP_08666789.1| 50S ribosomal protein L4 [Paracoccus sp. TRP]
Length = 206
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 107/166 (64%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GNIELSDDIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KKVR LGLK ALSA+AA G+L++ E+L +
Sbjct: 74 HGSRKAPIFRHGGVYKGPTPRSHAFDLPKKVRALGLKHALSAKAAAGELVIVENLNIAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+VL+ DG ++E A +NL V+VLPS+
Sbjct: 134 KTGAVAKAVKE-NGWKRVLVIDGAEVNETFARAARNLEGVDVLPSI 178
>gi|414162148|ref|ZP_11418395.1| 50S ribosomal protein L4 [Afipia felis ATCC 53690]
gi|410879928|gb|EKS27768.1| 50S ribosomal protein L4 [Afipia felis ATCC 53690]
Length = 206
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ ++F + RKDII RVV WQLAKRQ GTH TK +EV TG
Sbjct: 1 MELNVTTLEGKAAGSVSLSDEIFGLEPRKDIIQRVVNWQLAKRQAGTHKTKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGL+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++ E+ KTK ++ +++ + T L+ DG + A +N+ +++VLP
Sbjct: 121 SLVVLDNAELKDAKTKALIGHFSGLGLT-SALIVDGAEVSNGFAQAARNIPHIDVLP 176
>gi|157964805|ref|YP_001499629.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5]
gi|157844581|gb|ABV85082.1| 50S ribosomal protein L4 [Rickettsia massiliae MTU5]
Length = 209
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/176 (46%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
V + N++ G + L ++F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 7 VLSLANKEVGEISLNENIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 66
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 67 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 126
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 127 VIDSLKLDKPKTSALVNILNKFQG-KSFCVIDGNEVDINFSLAAKNIYNTVIVPQI 181
>gi|209884814|ref|YP_002288671.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM5]
gi|337741542|ref|YP_004633270.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM5]
gi|386030558|ref|YP_005951333.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM4]
gi|226730700|sp|B6JET4.1|RL4_OLICO RecName: Full=50S ribosomal protein L4
gi|209873010|gb|ACI92806.1| ribosomal protein L4/L1 family [Oligotropha carboxidovorans OM5]
gi|336095626|gb|AEI03452.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM4]
gi|336099206|gb|AEI07029.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM5]
Length = 206
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ +F + R DII RVV WQLAKRQ GTH TK +E++ TG
Sbjct: 1 MELNVTTLEGKAAGSVNLSDTIFGLEPRTDIIQRVVNWQLAKRQAGTHKTKGRAEIARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGL+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYDLPKKVRALGLRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++ E+ KTK ++ +++ + T L+ DG ++ A +N+ +++VLP
Sbjct: 121 SLVVLDNAELKDAKTKALIGHFSGLGLT-SALIVDGAEVNNGFAQAARNIPHIDVLP 176
>gi|90417762|ref|ZP_01225674.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1]
gi|90337434|gb|EAS51085.1| ribosomal protein L4 [Aurantimonas manganoxydans SI85-9A1]
Length = 206
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 109/175 (62%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + + +D G LA D+F + R+DI+ R+VRWQLAKRQQG+H T +E++ TG K
Sbjct: 3 VTIKSLDGKDAGTATLADDIFGLEPREDILQRMVRWQLAKRQQGSHQTLGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARHG+ R PQFRGG HGP RSHA L KKVR L L+ ALSA+A G +
Sbjct: 63 LYRQKGTGRARHGSARAPQFRGGGKAHGPVSRSHAHDLPKKVRALALRHALSAKAKSGGI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V ++L+ KTK +V + + T L G + + +N+ ++VLP
Sbjct: 123 VVIDELKAAEGKTKAMVKTFADLGLT-NALFIGGAELDANFTRSARNIPQMDVLP 176
>gi|379713549|ref|YP_005301887.1| 50S ribosomal protein L4 [Rickettsia massiliae str. AZT80]
gi|376334195|gb|AFB31427.1| 50S ribosomal protein L4 [Rickettsia massiliae str. AZT80]
Length = 207
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + N++ G + L ++F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANKEVGEISLNENIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFCVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|398353244|ref|YP_006398708.1| 50S ribosomal protein L4 [Sinorhizobium fredii USDA 257]
gi|390128570|gb|AFL51951.1| 50S ribosomal protein L4 [Sinorhizobium fredii USDA 257]
Length = 206
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RV+RWQLAKRQQGTH K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVIRWQLAKRQQGTHKAKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP
Sbjct: 123 IVLDDLVANEAKTKTLAGAFASLGLT-NALIIGGAEIENNFKLAAQNIPNVDVLP 176
>gi|56417002|ref|YP_154076.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries]
gi|222475370|ref|YP_002563787.1| 50S ribosomal protein L4 [Anaplasma marginale str. Florida]
gi|81599118|sp|Q5PA59.1|RL4_ANAMM RecName: Full=50S ribosomal protein L4
gi|254803710|sp|B9KJ69.1|RL4_ANAMF RecName: Full=50S ribosomal protein L4
gi|56388234|gb|AAV86821.1| 50S ribosomal protein L4 [Anaplasma marginale str. St. Maries]
gi|222419508|gb|ACM49531.1| 50S ribosomal protein L4 (rplD) [Anaplasma marginale str. Florida]
Length = 208
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 92/125 (73%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 LVFED 225
+V +D
Sbjct: 123 VVLDD 127
>gi|414174076|ref|ZP_11428703.1| 50S ribosomal protein L4 [Afipia broomeae ATCC 49717]
gi|410890710|gb|EKS38509.1| 50S ribosomal protein L4 [Afipia broomeae ATCC 49717]
Length = 206
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 115/177 (64%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ ++F + RKD+I RVV WQLAKRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKAAGSVQLSDEIFGLEPRKDLIQRVVNWQLAKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGLK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLKHALSAKAQDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ ++ KTK ++ +++ +E T L+ DG ++ A +N+ +++VLP
Sbjct: 121 GLIVIENADLKDAKTKALLGHFSSLEIT-NALIIDGVEVNTGFAQAARNIPHIDVLP 176
>gi|308809341|ref|XP_003081980.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri]
gi|116060447|emb|CAL55783.1| 50S ribosomal protein L4 (ISS) [Ostreococcus tauri]
Length = 275
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 110/192 (57%), Gaps = 27/192 (14%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
+G L G +FD P+R D+ HRVVRWQ AK + GTH TKT EVSGT +K QKG GRA
Sbjct: 53 RGEATLPGRIFDQPLRVDVAHRVVRWQRAKARAGTHKTKTRGEVSGTTRKARPQKGQGRA 112
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
R G LR PQ RGG HGP PRSHA L KKVRR+GLK+ALSARAAEGK+++ +
Sbjct: 113 RVGMLRAPQMRGGGVAHGPVPRSHAYALPKKVRRMGLKVALSARAAEGKIVIVDSFAGME 172
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-------------------------EKLKLAT 265
KT+ + ++ T + L GG H E +++++
Sbjct: 173 PKTRVMKETLERL--TGDMGLAAGGKFHSTLIVDGEFEETSEEDDDEETYSPNEIVRISS 230
Query: 266 QNLHYVNVLPSV 277
+NL +V VLP +
Sbjct: 231 RNLPHVEVLPQI 242
>gi|357028808|ref|ZP_09090833.1| 50S ribosomal protein L4 [Mesorhizobium amorphae CCNWGS0123]
gi|355537508|gb|EHH06764.1| 50S ribosomal protein L4 [Mesorhizobium amorphae CCNWGS0123]
Length = 206
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V ++L++ KTK ++ + + T L+ G + + KLA N+ ++VLP
Sbjct: 123 IVIDELKLTEAKTKALIANFATLGLT-NALVIGGAELDQNFKLAATNIPNIDVLP 176
>gi|218290004|ref|ZP_03494181.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1]
gi|218239989|gb|EED07176.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius LAA1]
Length = 206
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L +F PIR D++H VV LA R++GTH TKT +EVSG G+K
Sbjct: 4 VAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG +HGP PRS+A K+ KKVRR L ALS++ EGK+
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQEGKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG 254
+V E LE KTK +V + N +K L+ DG
Sbjct: 124 VVVEGLEFERPKTKDMVGVLRNL-NVEKALIVDG 156
>gi|258512669|ref|YP_003186103.1| 50S ribosomal protein L4 [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479395|gb|ACV59714.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 206
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L +F PIR D++H VV LA R++GTH TKT +EVSG G+K
Sbjct: 4 VAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG +HGP PRS+A K+ KKVRR L ALS++ EGK+
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQEGKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG 254
+V E LE KTK +V + N +K L+ DG
Sbjct: 124 VVVEGLEFERPKTKDMVGVLRNL-NVEKALIIDG 156
>gi|383481895|ref|YP_005390810.1| 50S ribosomal protein L4 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
gi|378934234|gb|AFC72737.1| 50S ribosomal protein L4 [Rickettsia rhipicephali str.
3-7-female6-CWPP]
Length = 207
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 110/176 (62%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + N++ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANKEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + EGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCTEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + + + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-ESFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>gi|337286817|ref|YP_004626290.1| 50S ribosomal protein L4/L1e [Thermodesulfatator indicus DSM 15286]
gi|335359645|gb|AEH45326.1| ribosomal protein L4/L1e [Thermodesulfatator indicus DSM 15286]
Length = 207
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 118/197 (59%), Gaps = 11/197 (5%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E + L D+F+VP++ ++H+VVRWQ+A+ + GT TKT EV G G+K
Sbjct: 4 VAVVNNKKEKVDEVNLREDIFNVPVKVGLLHQVVRWQMARWRAGTACTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P + GG + GPKPR + K+NKK RRL LK+ALSARA EGKL
Sbjct: 64 PWRQKGTGRARQGSIRAPHWVGGGVVFGPKPRDYEFKVNKKERRLALKMALSARAQEGKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQM-ENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVR 279
LV +D + KTK V + + V+L + + EK + +NL V VL
Sbjct: 124 LVVDDFGLDEIKTKKFVEFLKGLGAEDALVVLPERDEVVEK---SARNLPTVKVL----- 175
Query: 280 STTQSFLIYYYFLDFDF 296
T L Y LD+++
Sbjct: 176 --TVDGLNVYDILDYEY 190
>gi|384136730|ref|YP_005519444.1| 50S ribosomal protein L4 [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339290815|gb|AEJ44925.1| ribosomal protein L4/L1e [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 203
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L +F PIR D++H VV LA R++GTH TKT +EVSG G+K
Sbjct: 1 MAVLNTAGQQVGEIELNEKIFGAPIRPDLMHIVVLQYLAARRRGTHKTKTRAEVSGGGRK 60
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG +HGP PRS+A K+ KKVRR L ALS++ EGK+
Sbjct: 61 PWRQKGTGRARQGSIRAPQWRGGGVVHGPVPRSYAFKVPKKVRRAALYSALSSKVQEGKI 120
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG 254
+V E LE KTK +V + N +K L+ DG
Sbjct: 121 VVVEGLEFERPKTKDMVGVLRNL-NVEKALIVDG 153
>gi|337269080|ref|YP_004613135.1| 50S ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075]
gi|336029390|gb|AEH89041.1| ribosomal protein L4/L1e [Mesorhizobium opportunistum WSM2075]
Length = 206
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 111/175 (63%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ ++L++ KTK ++ + + L+ G + + KLA N+ ++VLP
Sbjct: 123 IIIDELKLTEAKTKALIANFATL-GLSNALVIGGAELDQNFKLAATNIPNIDVLP 176
>gi|296533988|ref|ZP_06896504.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC
49957]
gi|296265654|gb|EFH11763.1| ribosomal protein L4/L1 family protein [Roseomonas cervicalis ATCC
49957]
Length = 206
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N G + L +F R DI+ RVV WQLAKR+ GTH K + EVSGT KK
Sbjct: 3 LPVITLDNGQAGEIDLPDALFAAAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LR PQFR G +HGP R H LNKKVRRLGL ALS +AAEGKL
Sbjct: 63 PYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKAAEGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + + + + + K L+ D + + A +NL VNVLPS+
Sbjct: 123 VVLDTAALGADAKTSAMASKVKALGWKSALVVD-AQVEDGFGRAVRNLKNVNVLPSM 178
>gi|348688832|gb|EGZ28646.1| hypothetical protein PHYSODRAFT_552366 [Phytophthora sojae]
Length = 277
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 135/256 (52%), Gaps = 21/256 (8%)
Query: 52 SGLSFLASRKFSTTILTPDSSEGAFPSDLLL--KKTVLTPDITIGLHQDLVIPVTNF--- 106
+ LS A R ++ + + A P++L L +K + P + + V P +
Sbjct: 14 AALSVSAPR--ASLVRAASTQAAAMPANLSLAEEKPMPPPRVIPAAQEVKVTPSGDLELQ 71
Query: 107 ---FNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
ED G + + G+VF P R DI+ RVVRWQLA R+ GT+ TKT SEVSG+ +K
Sbjct: 72 LLSLAEDSQELGTVTMDGEVFGAPDRVDILQRVVRWQLACRRAGTNKTKTRSEVSGSTRK 131
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKG+GRAR G +R PQ+RGG +HGP R + L KKVR +GL++ALS + EGKL
Sbjct: 132 PWKQKGSGRARVGDIRAPQWRGGYRVHGPVLRDFSYNLPKKVRAMGLRVALSTKLREGKL 191
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
V + L+V KTK + L G + LAT+N+ YV+ LP
Sbjct: 192 AVVDSLDVDVTKTKDMKKLLGG-RGWDHALFVGGEEVESSFVLATRNIPYVDTLP----- 245
Query: 281 TTQSFLIYYYFLDFDF 296
Q+ + Y L D
Sbjct: 246 --QNKINVYSILQKDL 259
>gi|433775497|ref|YP_007305964.1| 50S ribosomal protein L4, bacterial/organelle [Mesorhizobium
australicum WSM2073]
gi|433667512|gb|AGB46588.1| 50S ribosomal protein L4, bacterial/organelle [Mesorhizobium
australicum WSM2073]
Length = 206
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ +F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVELSDGIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH +L KKVR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHELPKKVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ ++L++ KTK ++ + + T L+ G + + KLA N+ ++VLP
Sbjct: 123 IIIDELKLTEAKTKALIANFATLGLT-NALVIGGAELDKNFKLAATNIPNIDVLP 176
>gi|281206127|gb|EFA80316.1| hypothetical protein PPL_07147 [Polysphondylium pallidum PN500]
Length = 318
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/176 (46%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 101 IPVTNFFN-EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+PV NF + E+ G + L +F VP+R DI+HR+VRWQ AK QGTH + + ++ T K
Sbjct: 111 VPVVNFKSKENVGEIQLLKSIFSVPLRVDILHRIVRWQRAKAMQGTHYAQNMGDIDRTNK 170
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP+ QKGTGRAR GT Q +GG PKPR H+ L KKVRRLGLK+AL+ + A+ K
Sbjct: 171 KPFSQKGTGRARQGTNHAIQMKGGARAFPPKPRDHSFSLPKKVRRLGLKVALATKLAQNK 230
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ E+LE+ SHKTK + E + LL D I L LA N+ +++LP
Sbjct: 231 LVIVENLELESHKTKDLDTLL--PEQWGRSLLVDKE-ISSNLSLAGFNIKRIDLLP 283
>gi|299135256|ref|ZP_07028447.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2]
gi|298590233|gb|EFI50437.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2]
Length = 206
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ ++F + RKDII RVV WQLAKRQ GTH K +EV TG
Sbjct: 1 MELNVTTLEGKAAGSVNLSDEIFGLEPRKDIIQRVVNWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGL+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALGLRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++ E+ KTK ++ +++ + T L+ DG ++ A +N+ +++VLP
Sbjct: 121 GLVVIDNAELKDAKTKALIAHFSGLGLT-SALIVDGAEVNNGFAQAARNIPHIDVLP 176
>gi|126724862|ref|ZP_01740705.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2150]
gi|126706026|gb|EBA05116.1| 50S ribosomal protein L4 [Rhodobacteraceae bacterium HTCC2150]
Length = 206
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 108/177 (61%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + LA D+F + R DI+HRVVR+QLAKRQ GTH KT SEV + KK
Sbjct: 3 LDVIKLDGKKAGSVDLAEDLFGLEARADILHRVVRYQLAKRQAGTHKVKTRSEVKYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG P FRGG GP PRSHA LNKK R LGL+ ALSA+A G+L
Sbjct: 63 IYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHAHDLNKKFRALGLRHALSAKAGAGQL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V ++ V KT + ++ K+ L+ DG ++ A+ N+ ++VLPS+
Sbjct: 123 VVLDEAVVADGKTGVLAKMVKEL-GWKRALVIDGAEVNANFAQASANIDGLDVLPSM 178
>gi|154245624|ref|YP_001416582.1| 50S ribosomal protein L4 [Xanthobacter autotrophicus Py2]
gi|226731446|sp|A7IFY2.1|RL4_XANP2 RecName: Full=50S ribosomal protein L4
gi|154159709|gb|ABS66925.1| ribosomal protein L4/L1e [Xanthobacter autotrophicus Py2]
Length = 206
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + L+ ++F + R DI+HR V WQL++RQ GTH TK SE++ T KK
Sbjct: 3 ITVKTLDGIEAGSVTLSDEIFGLEPRADILHRCVTWQLSRRQAGTHRTKGRSEINRTSKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP RSHAI L KKVR L LK ALS++A ++
Sbjct: 63 MYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAIDLPKKVRALALKHALSSKAKAAQI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + + + KTK + ++ ++ + VL+ DG + + + LA +NL YV+VLP
Sbjct: 123 IVLDKVSLDDPKTKALKEHFAKL-GLESVLIVDGAQVEQNVALAARNLPYVDVLP 176
>gi|430003421|emb|CCF19208.1| 50S ribosomal subunit protein L4 [Rhizobium sp.]
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 107/173 (61%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH K SEVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDEIFGLDPREDILARMVRWQLAKKQQGTHKIKNRSEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+ L+V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAEDLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK +V + + T L+ G + KLA QN+ V+VLP
Sbjct: 125 IDNLVAAEAKTKALVGSFASLGLT-NALIIGGSELDNNFKLAAQNIPNVDVLP 176
>gi|395779755|ref|ZP_10460224.1| 50S ribosomal protein L4 [Bartonella washoensis 085-0475]
gi|395420130|gb|EJF86415.1| 50S ribosomal protein L4 [Bartonella washoensis 085-0475]
Length = 206
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 112/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLV V + G + ++ VF + R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLV--VKTLEGNEAGKLKVSEGVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++L V KTK +V+ ++++ K LL G I A N+ ++VLP
Sbjct: 120 NDLIVVDELNVKDAKTKMLVSSFSKL-GFKNALLIGGKEIDVNFSRAASNIPNIDVLP 176
>gi|146278567|ref|YP_001168726.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17025]
gi|166199854|sp|A4WVK7.1|RL4_RHOS5 RecName: Full=50S ribosomal protein L4
gi|145556808|gb|ABP71421.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17025]
Length = 206
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVIEDIAMSEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + ++ K+VL+ DG I+E A +NL ++VLPS+
Sbjct: 134 KTALLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGIDVLPSI 178
>gi|77462260|ref|YP_351764.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides 2.4.1]
gi|126461136|ref|YP_001042250.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides ATCC 17029]
gi|221638114|ref|YP_002524376.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131]
gi|332560141|ref|ZP_08414463.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides WS8N]
gi|429207693|ref|ZP_19198949.1| LSU ribosomal protein L4p (L1e) [Rhodobacter sp. AKP1]
gi|109893632|sp|Q3J5S1.1|RL4_RHOS4 RecName: Full=50S ribosomal protein L4
gi|166199853|sp|A3PGL2.1|RL4_RHOS1 RecName: Full=50S ribosomal protein L4
gi|254803750|sp|B9KL92.1|RL4_RHOSK RecName: Full=50S ribosomal protein L4
gi|77386678|gb|ABA77863.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides 2.4.1]
gi|126102800|gb|ABN75478.1| LSU ribosomal protein L4P [Rhodobacter sphaeroides ATCC 17029]
gi|221158895|gb|ACL99874.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides KD131]
gi|332277853|gb|EGJ23168.1| 50S ribosomal protein L4 [Rhodobacter sphaeroides WS8N]
gi|428189086|gb|EKX57642.1| LSU ribosomal protein L4p (L1e) [Rhodobacter sp. AKP1]
Length = 206
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVLEDIALAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + ++ K+VL+ DG I+E A +NL V+VLPS+
Sbjct: 134 KTAMLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGVDVLPSI 178
>gi|335036156|ref|ZP_08529483.1| 50S ribosomal protein L4 [Agrobacterium sp. ATCC 31749]
gi|333792047|gb|EGL63417.1| 50S ribosomal protein L4 [Agrobacterium sp. ATCC 31749]
Length = 206
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK SEVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP
Sbjct: 121 ELIIIDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLP 176
>gi|325293335|ref|YP_004279199.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3]
gi|418408668|ref|ZP_12981984.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens 5A]
gi|325061188|gb|ADY64879.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3]
gi|358005582|gb|EHJ97908.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens 5A]
Length = 206
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TKT +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKTRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP
Sbjct: 121 DLIIVDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLP 176
>gi|409402007|ref|ZP_11251633.1| 50S ribosomal protein L4 [Acidocella sp. MX-AZ02]
gi|409129325|gb|EKM99183.1| 50S ribosomal protein L4 [Acidocella sp. MX-AZ02]
Length = 204
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/177 (46%), Positives = 109/177 (61%), Gaps = 3/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +F + G + L ++F R DII RV+ WQLAKR+ GTH K + EVSGT +K
Sbjct: 3 LDVVDFDAKAAGSVELPDELFAAEPRVDIIARVIHWQLAKRRAGTHKVKGMGEVSGTTRK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G+LR PQFR G +HGP R H LNKKVRRLGL ALSA+AAEGKL
Sbjct: 63 PYKQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSAKAAEGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + + KTK + K L+ D + EK A++N+ ++VLP V
Sbjct: 123 VVLDGVAALD-KTKDVAAKVANF-GWKSALIVD-AAVEEKFGRASRNVKGLDVLPVV 176
>gi|13470552|ref|NP_102121.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099]
gi|46577286|sp|Q98N56.1|RL4_RHILO RecName: Full=50S ribosomal protein L4
gi|14021294|dbj|BAB47907.1| 50S ribosomal protein L4 [Mesorhizobium loti MAFF303099]
Length = 206
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L K VR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKNVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V ++L++ KTK ++ + + L+ G + + KLA N+ ++VLP
Sbjct: 123 IVIDELKLTEAKTKALIANFATL-GLSNALVIGGAELDKNFKLAATNIPNIDVLP 176
>gi|15889241|ref|NP_354922.1| 50S ribosomal protein L4 [Agrobacterium fabrum str. C58]
gi|46576833|sp|Q8UE19.1|RL4_AGRT5 RecName: Full=50S ribosomal protein L4
gi|15157068|gb|AAK87707.1| 50S ribosomal protein L4 [Agrobacterium fabrum str. C58]
Length = 206
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK SEVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP
Sbjct: 121 ELIIVDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLP 176
>gi|395793268|ref|ZP_10472673.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. arupensis
Pm136co]
gi|423713038|ref|ZP_17687298.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395424664|gb|EJF90844.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395431582|gb|EJF97600.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. arupensis
Pm136co]
Length = 207
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 109/175 (62%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + ++ +F + R+DI+ RVVRWQLA+RQQGTH ++ S+VS TG K
Sbjct: 4 IVVKTLDGNEAGKLKVSEGIFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRTGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LG+++ALSA+ L
Sbjct: 64 MFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHACDLPKKVRALGVRLALSAKLKANDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +DL V KTK +V+ ++++ LL G I A N+ ++VLP
Sbjct: 124 IVVDDLSVKDAKTKMLVSSFSKL-GFNNALLVGGKEIDINFSRAASNIPNIDVLP 177
>gi|402771843|ref|YP_006591380.1| 50S ribosomal protein L4 [Methylocystis sp. SC2]
gi|401773863|emb|CCJ06729.1| 50S ribosomal protein L4 [Methylocystis sp. SC2]
Length = 206
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 115/177 (64%), Gaps = 5/177 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I VT+F + G + L+ +VF + RKD+I R++RWQLAKR+ GTH+ K +E++ +GKK
Sbjct: 3 IDVTSFDGQAAGSIELSDEVFGLEPRKDLIFRMIRWQLAKRRAGTHAVKNRAEIARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+QKGTG ARHG+ R PQFRGG GP RSHA L KKVR+L LK ALSA+A +G +
Sbjct: 63 LHKQKGTGGARHGSARAPQFRGGGRAFGPVVRSHAHDLTKKVRQLALKHALSAKAKDGGI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V+E E+ +TK + + + + +EN ++ GG LA +N+ +++LP
Sbjct: 123 IVWESAELAEPRTKLLASSFAKTGLENA---IIIVGGAPQHNFVLAARNIPKIDILP 176
>gi|395782719|ref|ZP_10463091.1| 50S ribosomal protein L4 [Bartonella rattimassiliensis 15908]
gi|395416597|gb|EJF82967.1| 50S ribosomal protein L4 [Bartonella rattimassiliensis 15908]
Length = 206
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQG+H ++ S+VS T
Sbjct: 2 DLVI--KTLYGNEAGKLKVSEAIFDLVPREDILQRVVRWQLARRQQGSHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRSLGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ ++L V KTK +V++++++ LL G I A N+ +++LP
Sbjct: 120 KDLIIVDELVVKDAKTKVLVSHFSKL-GLNNALLIGGKEIDINFFRAASNIPNIDILP 176
>gi|92117099|ref|YP_576828.1| 50S ribosomal protein L4 [Nitrobacter hamburgensis X14]
gi|122418094|sp|Q1QN29.1|RL4_NITHX RecName: Full=50S ribosomal protein L4
gi|91799993|gb|ABE62368.1| LSU ribosomal protein L4P [Nitrobacter hamburgensis X14]
Length = 206
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT G + L+ +F + RKD+I R V WQLAKRQ GTH TK +E+ TG
Sbjct: 1 MELNVTTLEGNAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTHKTKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L L+ ALSA+A +G
Sbjct: 61 KKMFKQKGTGNARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + E+ KTK +V +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 GLIVIDSAELNEAKTKALVGHFSGLGLT-NALIVDGAAVHAGFATAARNIPNIDVLP 176
>gi|323136087|ref|ZP_08071170.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242]
gi|322399178|gb|EFY01697.1| ribosomal protein L4/L1e [Methylocystis sp. ATCC 49242]
Length = 206
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I VT+F + G + L+ DVF + R D+I R++RWQLAKR+ GTH+ K ++++ TG
Sbjct: 1 MKIDVTSFDGQAAGSIELSDDVFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP+ RSH L KKVR+L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSGRAPQFRGGGRAFGPQVRSHEHDLPKKVRQLALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V+E E+ KTK + + + +++ GG LA +N+ ++VLP
Sbjct: 121 GIIVWEKAELAEPKTKILAGGFAKSGLNNAIIIV-GGAPQANFALAARNIPQIDVLP 176
>gi|242278659|ref|YP_002990788.1| 50S ribosomal protein L4 [Desulfovibrio salexigens DSM 2638]
gi|259491552|sp|C6C186.1|RL4_DESAD RecName: Full=50S ribosomal protein L4
gi|242121553|gb|ACS79249.1| ribosomal protein L4/L1e [Desulfovibrio salexigens DSM 2638]
Length = 206
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 2/174 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + ++ G M LA +VF+VP++ +I+H VVR QLA ++QGTH+TKT G G K
Sbjct: 4 ITIYDQTKKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG T GP+PR ++ K+NKKVRRL LK+AL++R +E K+
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V +++++P KTK V + K +++ KL L+ +N+ + ++
Sbjct: 124 MVVKNIDLPEIKTKLFVEVAEALGLEKALVVVKDA--DNKLLLSARNIPGIKLI 175
>gi|39938687|ref|NP_950453.1| ribosomal protein L4 [Onion yellows phytoplasma OY-M]
gi|46577157|sp|P61067.1|RL4_ONYPE RecName: Full=50S ribosomal protein L4
gi|39721796|dbj|BAD04286.1| ribosomal protein L4 [Onion yellows phytoplasma OY-M]
Length = 207
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 101 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ F+ VLA VFD+ + +++ VV Q A +QGTH+TKT + V+G
Sbjct: 1 MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHG++R P +RGG GP PR +++K+N+KVR L LK ALS +A
Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRDYSVKVNQKVRSLALKSALSLQAKN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
+L+V +++ + +HKTK ++ T K L+ + E+L LA++NL Y+
Sbjct: 121 NQLVVVDNINLATHKTKDFQQMLQKLNITSKSLIVVTQ-MTEQLALASRNLSYI 173
>gi|423712871|ref|ZP_17687169.1| 50S ribosomal protein L4 [Bartonella washoensis Sb944nv]
gi|395410567|gb|EJF77121.1| 50S ribosomal protein L4 [Bartonella washoensis Sb944nv]
Length = 206
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 112/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLV V + G + ++ VF + R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLV--VKTLEGNEAGKLKVSEGVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++L V KTK +V+ ++++ + LL G I A N+ ++VLP
Sbjct: 120 NDLIVVDELNVKDAKTKMLVSSFSKL-GFRNALLIGGKEIDVNFSRAASNIPNIDVLP 176
>gi|114771268|ref|ZP_01448688.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2255]
gi|114548193|gb|EAU51080.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2255]
Length = 206
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 105/166 (63%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + R DI+HRVVR+QLAKRQ GTH KT SE S + KK + QKGTG AR
Sbjct: 14 GSIDLDDSVFGLEPRADILHRVVRYQLAKRQAGTHKVKTRSETSYSTKKIYNQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GPK RSHA L KK R+LGLK ALSA+A G+L+V + +E +
Sbjct: 74 HGDRNAPIFRGGGVYKGPKVRSHAHDLTKKFRKLGLKHALSAKATAGELIVIDSVEAKTS 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + KKVL+ DG ++E LA++N+ +++LPS
Sbjct: 134 KTADLAKVVTNL-GWKKVLIIDGTDVNENFLLASRNIDGLDILPSA 178
>gi|402486083|ref|ZP_10832915.1| 50S ribosomal protein L4 [Rhizobium sp. CCGE 510]
gi|401814739|gb|EJT07069.1| 50S ribosomal protein L4 [Rhizobium sp. CCGE 510]
Length = 206
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DII RVVRWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL++ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 125 IDNLVATEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|115525584|ref|YP_782495.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisA53]
gi|122295409|sp|Q07KL9.1|RL4_RHOP5 RecName: Full=50S ribosomal protein L4
gi|115519531|gb|ABJ07515.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisA53]
Length = 206
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT +D G + L+ ++F + R DII R V WQLAKRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKDAGSVQLSDEIFGLDPRSDIIQRCVIWQLAKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR + LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRAMALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + + S KTK +V ++ + T L+ DG ++ +A +N+ ++VLP
Sbjct: 121 GLIVIDQATLDSAKTKALVGHFAGLGLT-SALIIDGAELNNGFAVAARNIPNIDVLP 176
>gi|163868649|ref|YP_001609858.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476]
gi|189029491|sp|A9IW26.1|RL4_BART1 RecName: Full=50S ribosomal protein L4
gi|161018305|emb|CAK01863.1| 50S ribosomal protein L4 [Bartonella tribocorum CIP 105476]
Length = 206
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++L V KTK +V++++++ LL G I A N+ ++VLP
Sbjct: 120 KDLIVVDELAVKDAKTKKLVSHFSKL-GFNNALLIGGQEIDINFFRAASNIPNIDVLP 176
>gi|58584598|ref|YP_198171.1| 50S ribosomal protein L4 [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|75497927|sp|Q5GSU5.1|RL4_WOLTR RecName: Full=50S ribosomal protein L4
gi|58418914|gb|AAW70929.1| Ribosomal protein L4 [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 204
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 106/175 (60%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N D G L +F V + I+H +VRWQLAKR+ GTH K IS+VSGT KP+
Sbjct: 5 LVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLK+ALS + ++++
Sbjct: 65 SQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L + KT + Y + + +++ D + L A +NLHYVN++ +
Sbjct: 125 LNNLNINVKKTSEMCKYIQNFKFSSFLIVGD---YEDSLLRAARNLHYVNLIKPI 176
>gi|395765125|ref|ZP_10445741.1| 50S ribosomal protein L4 [Bartonella sp. DB5-6]
gi|395412978|gb|EJF79457.1| 50S ribosomal protein L4 [Bartonella sp. DB5-6]
Length = 206
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ VF + RKDI+ RVVRWQLA+ QQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GNETGKLKVSEAVFGLIPRKDILQRVVRWQLARHQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVARSHAHDLPKKVRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E L V KTK +V++++++ LL G I A N+ +++LP
Sbjct: 120 KDLIVVEALSVKDAKTKMLVSHFSKL-GFDNALLIGGKEIDINFSRAASNIPNIDILP 176
>gi|408785477|ref|ZP_11197222.1| 50S ribosomal protein L4 [Rhizobium lupini HPC(L)]
gi|417859621|ref|ZP_12504677.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens F2]
gi|418299388|ref|ZP_12911222.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens CCNWGS0286]
gi|424910713|ref|ZP_18334090.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|338822685|gb|EGP56653.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens F2]
gi|355535189|gb|EHH04479.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens CCNWGS0286]
gi|392846744|gb|EJA99266.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|408488625|gb|EKJ96934.1| 50S ribosomal protein L4 [Rhizobium lupini HPC(L)]
Length = 206
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH +K SEVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKSKNRSEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP
Sbjct: 121 ELIIVDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLP 176
>gi|395786491|ref|ZP_10466218.1| 50S ribosomal protein L4 [Bartonella tamiae Th239]
gi|423716616|ref|ZP_17690806.1| 50S ribosomal protein L4 [Bartonella tamiae Th307]
gi|395422789|gb|EJF88985.1| 50S ribosomal protein L4 [Bartonella tamiae Th239]
gi|395428690|gb|EJF94765.1| 50S ribosomal protein L4 [Bartonella tamiae Th307]
Length = 206
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + ++ G + L+ VF + R+DI+ RVVRWQLA+RQQGTH T++ ++VS TG K
Sbjct: 3 LNIMTLEGKETGKVTLSDAVFGLDPREDILQRVVRWQLARRQQGTHQTQSRADVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ L
Sbjct: 63 MYKQKGTGRARHSSARAPQFRGGGKAHGPVARSHAHDLPKKVRALGLRFALSAKLKSNDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL + KTK + + + ++ K LL G + A N+ ++ LP
Sbjct: 123 IIVDDLSLKEPKTKVLTSNFEKL-GFKNALLIGGNELDVNFSRAASNIPNIDFLP 176
>gi|269958585|ref|YP_003328372.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel]
gi|269848414|gb|ACZ49058.1| 50S ribosomal protein L4 [Anaplasma centrale str. Israel]
Length = 208
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 106/174 (60%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L VF V R+D++ VV WQLAKR+ GTH T+ IS+V GT K
Sbjct: 3 VNVVNIKNEVVGQLELNASVFGVQPRRDVLRDVVDWQLAKRRAGTHKTRCISDVRGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V +D + KT + L+ G +K+ A +NL V++L
Sbjct: 123 VVLDDSGLVLEKTADARAAFGNFGAYGSYLVVAEG-YEDKVACACRNLPNVDLL 175
>gi|317131370|ref|YP_004090684.1| 50S ribosomal protein L4 [Ethanoligenens harbinense YUAN-3]
gi|315469349|gb|ADU25953.1| ribosomal protein L4/L1e [Ethanoligenens harbinense YUAN-3]
Length = 207
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 112/186 (60%), Gaps = 7/186 (3%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N E G + LA VF + K +H VV LA ++QGT ST T SEVSG G+KPW
Sbjct: 6 VFNIAGEQVGEIELADSVFGIEPNKTALHTVVVNYLANQRQGTQSTLTRSEVSGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+ R PQ++ G GPKPRS+ +NKKVRRL LK ALSA+ A G+L+V
Sbjct: 66 RQKGTGHARQGSTRAPQWKHGGIALGPKPRSYTYTVNKKVRRLALKSALSAKLAAGELVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTT 282
+ + +P KTK +V ++ E +KK L G ++E L + +N +P V ++T
Sbjct: 126 LDAISLPEIKTKQVVTILSKFETSKKALFVTAG-VNENLVKSARN------IPGVKTAST 178
Query: 283 QSFLIY 288
S +Y
Sbjct: 179 GSLNVY 184
>gi|58038854|ref|YP_190818.1| 50S ribosomal protein L4 [Gluconobacter oxydans 621H]
gi|81557183|sp|Q5FTY4.1|RL4_GLUOX RecName: Full=50S ribosomal protein L4
gi|58001268|gb|AAW60162.1| LSU ribosomal protein L4P [Gluconobacter oxydans 621H]
Length = 204
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLICALSQKAAEGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
D KT+ + T L+ D G + E+ A NL ++VLP++
Sbjct: 125 L-DAANGVTKTREAAAKIKALGWT-SALIVD-GAVDEQFARAIANLPKIDVLPTI 176
>gi|240850834|ref|YP_002972234.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup]
gi|240267957|gb|ACS51545.1| 50S ribosomal protein L4 [Bartonella grahamii as4aup]
Length = 206
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQG+H ++ S+VS T
Sbjct: 2 DLVIKTLD--GNEAGKLKVSEAIFDLVPREDILQRVVRWQLARRQQGSHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ ++L V KTK +V++++++ LL G I A N+ +++LP
Sbjct: 120 KDLIIVDELTVKDAKTKMLVSHFSKL-GFNNALLIGGKEIDINFFRAVSNIPNIDILP 176
>gi|239832121|ref|ZP_04680450.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301]
gi|444310461|ref|ZP_21146083.1| 50S ribosomal protein L4 [Ochrobactrum intermedium M86]
gi|239824388|gb|EEQ95956.1| 50S ribosomal protein L4 [Ochrobactrum intermedium LMG 3301]
gi|443486269|gb|ELT49049.1| 50S ribosomal protein L4 [Ochrobactrum intermedium M86]
Length = 206
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLAATEAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
>gi|114764143|ref|ZP_01443381.1| 50S ribosomal protein L4, partial [Pelagibaca bermudensis HTCC2601]
gi|114543295|gb|EAU46311.1| 50S ribosomal protein L4 [Roseovarius sp. HTCC2601]
Length = 177
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 106/166 (63%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD+ R DI+HRVVRWQ K Q GTH KT SEVS + KK +RQKGTG AR
Sbjct: 14 GEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KKVR+LGLK+ALSA+A G L++ E+ +
Sbjct: 74 HGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRQLGLKLALSAKAKAGSLVIIENADADG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK + + + K+ L+ DG ++E A N+ ++VLPSV
Sbjct: 133 KTKTLASQVKNL-GWKRALVIDGAEVNENFARAAANIDGLDVLPSV 177
>gi|209548936|ref|YP_002280853.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424914485|ref|ZP_18337849.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM597]
gi|226730713|sp|B5ZYT6.1|RL4_RHILW RecName: Full=50S ribosomal protein L4
gi|209534692|gb|ACI54627.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|392850661|gb|EJB03182.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM597]
Length = 206
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL++ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 125 IDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|90424936|ref|YP_533306.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB18]
gi|109893630|sp|Q211E9.1|RL4_RHOPB RecName: Full=50S ribosomal protein L4
gi|90106950|gb|ABD88987.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB18]
Length = 206
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDEIFGLDPRVDIIQRCVNWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E + + KTK +V +++ + T L+ DG ++ +A +N+ ++VLP
Sbjct: 121 GLIVIESATLEAAKTKALVGHFSGLGLT-SALIIDGAELNNGFAVAARNIPNIDVLP 176
>gi|395777952|ref|ZP_10458465.1| 50S ribosomal protein L4 [Bartonella elizabethae Re6043vi]
gi|423715878|ref|ZP_17690099.1| 50S ribosomal protein L4 [Bartonella elizabethae F9251]
gi|395418261|gb|EJF84588.1| 50S ribosomal protein L4 [Bartonella elizabethae Re6043vi]
gi|395429180|gb|EJF95254.1| 50S ribosomal protein L4 [Bartonella elizabethae F9251]
Length = 206
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQL++RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GREAGKLKVSESIFDLVPREDILQRVVRWQLSRRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ ++L V KTK +V++++++ LL G I A N+ +++LP
Sbjct: 120 KDLIIVDELIVKDAKTKKLVSHFSKL-GFNNALLIGGKEIDINFSRAASNIPNIDILP 176
>gi|196006758|ref|XP_002113245.1| hypothetical protein TRIADDRAFT_27010 [Trichoplax adhaerens]
gi|190583649|gb|EDV23719.1| hypothetical protein TRIADDRAFT_27010, partial [Trichoplax
adhaerens]
Length = 220
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 101/153 (66%), Gaps = 2/153 (1%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
+R DI+HR V WQLAKR+ GT TK EV G G+KPW QKG+GRAR G++R P FRGG
Sbjct: 1 LRIDILHRYVVWQLAKRRAGTAKTKNRGEVRGGGRKPWPQKGSGRARQGSIRAPHFRGGG 60
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
T+HGP+PRS+ +KVR + +++ALS + A+G L + + + +HKT+ + + +Q
Sbjct: 61 TVHGPRPRSYDFTFPRKVRSMAIRVALSVKFAQGDLYIVDSFGLETHKTQNLKDLLDQ-R 119
Query: 245 NTKKVLLCDGGC-IHEKLKLATQNLHYVNVLPS 276
N LL DG + E L+LA +N+ +VLPS
Sbjct: 120 NWYSALLVDGNTYVDENLRLAARNIQKCDVLPS 152
>gi|148256391|ref|YP_001240976.1| 50S ribosomal protein L4 [Bradyrhizobium sp. BTAi1]
gi|166234638|sp|A5ELM6.1|RL4_BRASB RecName: Full=50S ribosomal protein L4
gi|146408564|gb|ABQ37070.1| LSU ribosomal protein L4P [Bradyrhizobium sp. BTAi1]
Length = 206
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT +D G + L+ +F + R DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKDAGSVQLSDAIFGLEPRVDIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ + + KTK ++ +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLT-NALIIDGAELHNGFAAAARNIPNLDVLP 176
>gi|426400733|ref|YP_007019705.1| 50S ribosomal protein L4/L1 family protein [Candidatus
Endolissoclinum patella L2]
gi|425857401|gb|AFX98437.1| ribosomal L4/L1 family protein [Candidatus Endolissoclinum patella
L2]
Length = 206
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/176 (43%), Positives = 110/176 (62%), Gaps = 1/176 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + + L +F + RKDI+ RVV WQLAKR+ G H K ISE+SGT KK
Sbjct: 3 IDVINLDAKKTDEIYLDESIFGLETRKDILTRVVNWQLAKRRSGNHKIKGISEISGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R FRGG T+HGP RSH +L KK R+LGL+IALS + +G+L
Sbjct: 63 PFRQKGTGRARQGSMRATHFRGGQTVHGPVVRSHRQQLTKKFRKLGLRIALSTKFKDGQL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V ++ KTK + + ++ +L+ DG +++ A +N+ V++LP
Sbjct: 123 IVIDEATADRPKTKPLAAKF-KLLGWLSLLVIDGEVLNKNFAYAVRNIPLVDLLPQ 177
>gi|162149173|ref|YP_001603634.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5]
gi|209545083|ref|YP_002277312.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5]
gi|189029506|sp|A9H3R2.1|RL4_GLUDA RecName: Full=50S ribosomal protein L4
gi|161787750|emb|CAP57346.1| 50S ribosomal protein L4 [Gluconacetobacter diazotrophicus PAl 5]
gi|209532760|gb|ACI52697.1| ribosomal protein L4/L1e [Gluconacetobacter diazotrophicus PAl 5]
Length = 204
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 103/175 (58%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G VL ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT KKP+
Sbjct: 5 IKTLDNGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
D S +T + + K L+ D + E A +NL ++ LP++
Sbjct: 125 L-DAATASGRTSELAAKVKAL-GWKSALIVD-ATVEENFGRAARNLPKIDALPTI 176
>gi|78357299|ref|YP_388748.1| 50S ribosomal protein L4 [Desulfovibrio alaskensis G20]
gi|109893592|sp|Q30Z43.1|RL4_DESDG RecName: Full=50S ribosomal protein L4
gi|78219704|gb|ABB39053.1| ribosomal protein L4/L1e [Desulfovibrio alaskensis G20]
Length = 206
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 117/177 (66%), Gaps = 5/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ V +++DK G + LA +VF+V +R +I++ VVR Q A ++ GTHS KT S +SG
Sbjct: 1 MAVVKVYDQDKKETGELTLAPEVFEVEVRPEILNLVVRAQRAAKRAGTHSVKTRSTISGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G+ R P +RGG + GP+PR ++ K+NKKVR+L LK+ALS+R AE
Sbjct: 61 GAKPWRQKGTGRARSGSNRSPVWRGGAVVFGPQPRDYSFKVNKKVRKLALKMALSSRLAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L+V + +E+P KTK +V + K +++ + +KL L+ +N+ + ++
Sbjct: 121 ENLMVVKGIELPEVKTKHMVKVAGALGLGKALVVTP--EMDDKLVLSARNIPGITLM 175
>gi|39936312|ref|NP_948588.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009]
gi|192292036|ref|YP_001992641.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris TIE-1]
gi|46577158|sp|P61068.1|RL4_RHOPA RecName: Full=50S ribosomal protein L4; AltName: Full=RRP-L4
gi|226730715|sp|B3QBX9.1|RL4_RHOPT RecName: Full=50S ribosomal protein L4
gi|39650167|emb|CAE28690.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris CGA009]
gi|192285785|gb|ACF02166.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris TIE-1]
Length = 206
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDEIFGLEPRSDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + E+ + KTK +V +++ + + L+ DG ++ A +N+ ++VLP
Sbjct: 121 GLIVLDKAELEAAKTKTLVGHFSGL-GLESALIIDGAEVNNGFAAAARNIPNIDVLP 176
>gi|410943569|ref|ZP_11375310.1| 50S ribosomal protein L4 [Gluconobacter frateurii NBRC 101659]
Length = 204
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 106/175 (60%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVSPRADIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +AA+GKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAADGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ S KT+ V + L+ D G + E+ A NL ++VLP++
Sbjct: 125 LDTANGVS-KTREAVAKLKAL-GWSSALIVD-GAVDEQFARAVANLPKIDVLPTI 176
>gi|75675557|ref|YP_317978.1| 50S ribosomal protein L4 [Nitrobacter winogradskyi Nb-255]
gi|109893613|sp|Q3SSW5.1|RL4_NITWN RecName: Full=50S ribosomal protein L4
gi|74420427|gb|ABA04626.1| LSU ribosomal protein L4P [Nitrobacter winogradskyi Nb-255]
Length = 206
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ +F + RKD+I R V WQLAK Q GTH TK +E+ TG
Sbjct: 1 MELNVTTLEGKAAGSVHLSDGIFGLEPRKDLIQRCVNWQLAKSQAGTHKTKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L L+ ALSA+A +G
Sbjct: 61 KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + +E+ KTK ++ +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSSLGLT-SALIIDGAQVHAGFATAARNIPNIDVLP 176
>gi|319789239|ref|YP_004150872.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1]
gi|317113741|gb|ADU96231.1| ribosomal protein L4/L1e [Thermovibrio ammonificans HB-1]
Length = 208
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V + N++ G + + ++ + PI++ + V+WQLAKR++GTHSTKT EV G G
Sbjct: 1 MEIKVVDLNNKETGTVQIKDEIANAPIKQHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
+KPW QK TGRAR G++R PQ+ GG +HGPKPR ++ L KKVR++ LK ++ R EG
Sbjct: 61 RKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYSYNLPKKVRKVALKSVVAGRIQEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V ED KTK V + +EN+ KVLL + E L+ +NL V VLP
Sbjct: 121 NFIVVEDFSFEKPKTKQAVEFLKNLGLENS-KVLLVVPAELDENTYLSFRNLPNVKVLP 178
>gi|218672011|ref|ZP_03521680.1| 50S ribosomal protein L4 [Rhizobium etli GR56]
Length = 206
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 108/177 (61%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V ++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 121 DVIVIDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|86357306|ref|YP_469198.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42]
gi|417103119|ref|ZP_11960977.1| 50S ribosomal protein L4 [Rhizobium etli CNPAF512]
gi|109893627|sp|Q2K9L5.1|RL4_RHIEC RecName: Full=50S ribosomal protein L4
gi|86281408|gb|ABC90471.1| 50S ribosomal protein L4 [Rhizobium etli CFN 42]
gi|327191387|gb|EGE58413.1| 50S ribosomal protein L4 [Rhizobium etli CNPAF512]
Length = 206
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 108/177 (61%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V ++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 121 DVIVIDNLVAAEAKTKALASAFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|126736643|ref|ZP_01752383.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2]
gi|126713956|gb|EBA10827.1| ribosomal protein L4/L1e [Roseobacter sp. CCS2]
Length = 206
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/165 (47%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + RKDI+HRVVRWQ K QGTH SEVS + KK +RQKGTG AR
Sbjct: 14 GSVELNDEIFGLEPRKDILHRVVRWQRNKAMQGTHDVLGRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ P FRGG T GP PRSHA L KK R+LGLK ALSA+ A G+L++ +D+ V
Sbjct: 74 HGSRGAPIFRGGGTYKGPTPRSHAHDLPKKFRKLGLKHALSAKVAAGELVIVDDINVKDS 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
KT + + K+ L+ DG ++ K A N+ +NVLPS
Sbjct: 134 KTSALAKQLGSL-GWKRALIIDGSEVNADFKKAAANITTINVLPS 177
>gi|328953157|ref|YP_004370491.1| 50S ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109]
gi|328453481|gb|AEB09310.1| ribosomal protein L4/L1e [Desulfobacca acetoxidans DSM 11109]
Length = 207
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 115/177 (64%), Gaps = 5/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+PV + ++ D+ G + L D+F++P++ I+H VV QLA R+ GT STK SEV G
Sbjct: 1 MPVIDVYDIDRNKVGEVSLRDDIFNIPVQGHILHEVVTMQLACRRAGTASTKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R P +RGG + GPKPRS+A K KKVRRL LK+ALS++ A+
Sbjct: 61 GHKPWRQKGTGRARVGSIRSPLWRGGGVVFGPKPRSYAYKPPKKVRRLALKMALSSKLAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
G+LL+ + S KTK + + + K + + ++ L L+++N+ YV ++
Sbjct: 121 GQLLILDQYPYDSPKTKDFIRVLEKFQINKALFITADD--NQVLTLSSRNVPYVQIM 175
>gi|146340058|ref|YP_001205106.1| 50S ribosomal protein L4 [Bradyrhizobium sp. ORS 278]
gi|365885437|ref|ZP_09424438.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 375]
gi|365889689|ref|ZP_09428356.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. STM 3809]
gi|367474530|ref|ZP_09474031.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 285]
gi|166234639|sp|A4YSJ3.1|RL4_BRASO RecName: Full=50S ribosomal protein L4
gi|146192864|emb|CAL76869.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 278]
gi|365273167|emb|CCD86499.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 285]
gi|365285917|emb|CCD96969.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. ORS 375]
gi|365334554|emb|CCE00887.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. STM 3809]
Length = 206
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRADIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ + + KTK ++ +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLT-NALIIDGAELHNGFAAAARNIPNLDVLP 176
>gi|114327219|ref|YP_744376.1| 50S ribosomal protein L4 [Granulibacter bethesdensis CGDNIH1]
gi|122327801|sp|Q0BUP9.1|RL4_GRABC RecName: Full=50S ribosomal protein L4
gi|114315393|gb|ABI61453.1| LSU ribosomal protein L1E (= L4P) [Granulibacter bethesdensis
CGDNIH1]
Length = 215
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 104/179 (58%), Gaps = 2/179 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I + N G L ++F R DI+ RVV WQLA R+ GTH K + EVSGT
Sbjct: 1 MQIEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS + AEG
Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKQAEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KL+V D KT+ + + + L+ DG + E A+++L V+VLP++
Sbjct: 121 KLVVI-DTAAGMEKTRDLAAKLRAL-GWRSALIVDGASVDEGFARASRSLLAVDVLPTI 177
>gi|218460209|ref|ZP_03500300.1| 50S ribosomal protein L4 [Rhizobium etli Kim 5]
Length = 206
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 108/177 (61%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V ++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 121 DVIVIDNLIAAEAKTKALASAFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|58617355|ref|YP_196554.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel]
gi|75432695|sp|Q5FFU1.1|RL4_EHRRG RecName: Full=50S ribosomal protein L4
gi|58416967|emb|CAI28080.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Gardel]
Length = 205
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSGT K
Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVR LGLK+ALS + + KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+ + ++V KT ++ + E+ + L G ++ + + +NLH V +L +
Sbjct: 123 LILDSIDVNFVKTAQVLRFIKNFEH--QSFLIIGKDYNKGMMYSCKNLHNVTLLKQI 177
>gi|316933528|ref|YP_004108510.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris DX-1]
gi|315601242|gb|ADU43777.1| ribosomal protein L4/L1e [Rhodopseudomonas palustris DX-1]
Length = 206
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TG
Sbjct: 1 MELKVTTLEGNEAGSVQLSDEIFGLEPRTDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + E+ + KTK +V +++ + + L+ DG ++ A +N+ ++VLP
Sbjct: 121 GLIVLDKAELEAAKTKTLVGHFSGL-GLESALIVDGAEVNTGFAAAARNIPNIDVLP 176
>gi|85715130|ref|ZP_01046114.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A]
gi|85698045|gb|EAQ35918.1| 50S ribosomal protein L4 [Nitrobacter sp. Nb-311A]
Length = 206
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + +T + G + L+ +F + RKD+I R V WQLAKRQ GT TK +E+ TG
Sbjct: 1 MELNITTLEGKAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTRKTKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L L+ ALSA+A +G
Sbjct: 61 KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + +E+ KTK ++ +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSGLGLT-SALIVDGAQVHAGFATAARNIPNIDVLP 176
>gi|23502109|ref|NP_698236.1| 50S ribosomal protein L4 [Brucella suis 1330]
gi|62290143|ref|YP_221936.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941]
gi|82700066|ref|YP_414640.1| 50S ribosomal protein L4 [Brucella melitensis biovar Abortus 2308]
gi|148559402|ref|YP_001259152.1| 50S ribosomal protein L4 [Brucella ovis ATCC 25840]
gi|161619188|ref|YP_001593075.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365]
gi|163843498|ref|YP_001627902.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445]
gi|189024381|ref|YP_001935149.1| 50S ribosomal protein L4 [Brucella abortus S19]
gi|225627702|ref|ZP_03785739.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo]
gi|225852729|ref|YP_002732962.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457]
gi|237815651|ref|ZP_04594648.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A]
gi|256263781|ref|ZP_05466313.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9]
gi|260546691|ref|ZP_05822430.1| ribosomal protein L4 [Brucella abortus NCTC 8038]
gi|260565516|ref|ZP_05836000.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M]
gi|260566239|ref|ZP_05836709.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40]
gi|260754975|ref|ZP_05867323.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870]
gi|260758191|ref|ZP_05870539.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292]
gi|260762017|ref|ZP_05874360.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59]
gi|260883984|ref|ZP_05895598.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68]
gi|261214229|ref|ZP_05928510.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya]
gi|261219580|ref|ZP_05933861.1| ribosomal protein L4 [Brucella ceti M13/05/1]
gi|261314047|ref|ZP_05953244.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10]
gi|261317866|ref|ZP_05957063.1| ribosomal protein L4 [Brucella pinnipedialis B2/94]
gi|261322075|ref|ZP_05961272.1| ribosomal protein L4 [Brucella ceti M644/93/1]
gi|261325319|ref|ZP_05964516.1| ribosomal protein L4 [Brucella neotomae 5K33]
gi|261752541|ref|ZP_05996250.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513]
gi|261755200|ref|ZP_05998909.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686]
gi|261758424|ref|ZP_06002133.1| ribosomal protein L4 [Brucella sp. F5/99]
gi|265988895|ref|ZP_06101452.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1]
gi|265991309|ref|ZP_06103866.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1]
gi|265995146|ref|ZP_06107703.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether]
gi|297248538|ref|ZP_06932256.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196]
gi|306840302|ref|ZP_07473074.1| 50S ribosomal protein L4 [Brucella sp. BO2]
gi|306844136|ref|ZP_07476730.1| 50S ribosomal protein L4 [Brucella inopinata BO1]
gi|340790850|ref|YP_004756315.1| 50S ribosomal protein L4 [Brucella pinnipedialis B2/94]
gi|376273038|ref|YP_005151616.1| 50S ribosomal protein L4 [Brucella abortus A13334]
gi|376276156|ref|YP_005116595.1| 50S ribosomal protein L4 [Brucella canis HSK A52141]
gi|376280903|ref|YP_005154909.1| 50S ribosomal protein L4 [Brucella suis VBI22]
gi|384211599|ref|YP_005600681.1| 50S ribosomal protein L4 [Brucella melitensis M5-90]
gi|384224897|ref|YP_005616061.1| 50S ribosomal protein L4 [Brucella suis 1330]
gi|384408707|ref|YP_005597328.1| 50S ribosomal protein4/L1e [Brucella melitensis M28]
gi|384445287|ref|YP_005604006.1| 50S ribosomal protein L4 [Brucella melitensis NI]
gi|423166674|ref|ZP_17153377.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI435a]
gi|423170952|ref|ZP_17157627.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI474]
gi|423172966|ref|ZP_17159637.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI486]
gi|423178341|ref|ZP_17164985.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI488]
gi|423180382|ref|ZP_17167023.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI010]
gi|423183514|ref|ZP_17170151.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI016]
gi|423185546|ref|ZP_17172160.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI021]
gi|423188681|ref|ZP_17175291.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI259]
gi|46577272|sp|Q8G077.1|RL4_BRUSU RecName: Full=50S ribosomal protein L4
gi|51338733|sp|Q8YHN9.2|RL4_BRUME RecName: Full=50S ribosomal protein L4
gi|75496682|sp|Q57CQ9.1|RL4_BRUAB RecName: Full=50S ribosomal protein L4
gi|109893579|sp|Q2YM04.1|RL4_BRUA2 RecName: Full=50S ribosomal protein L4
gi|166234640|sp|A5VR05.1|RL4_BRUO2 RecName: Full=50S ribosomal protein L4
gi|189029492|sp|A9M5P9.1|RL4_BRUC2 RecName: Full=50S ribosomal protein L4
gi|189029493|sp|B0CH31.1|RL4_BRUSI RecName: Full=50S ribosomal protein L4
gi|226730626|sp|B2S678.1|RL4_BRUA1 RecName: Full=50S ribosomal protein L4
gi|254803720|sp|C0RJK0.1|RL4_BRUMB RecName: Full=50S ribosomal protein L4
gi|23348069|gb|AAN30151.1| ribosomal protein L4 [Brucella suis 1330]
gi|62196275|gb|AAX74575.1| RplD, ribosomal protein L4 [Brucella abortus bv. 1 str. 9-941]
gi|82616167|emb|CAJ11210.1| Ribosomal protein L4/L1e [Brucella melitensis biovar Abortus 2308]
gi|82798166|gb|ABB91835.1| ribosomal protein L4 [Brucella abortus]
gi|82798168|gb|ABB91836.1| ribosomal protein L4 [Brucella abortus]
gi|82798170|gb|ABB91837.1| ribosomal protein L4 [Brucella abortus]
gi|82798172|gb|ABB91838.1| ribosomal protein L4 [Brucella abortus]
gi|82798174|gb|ABB91839.1| ribosomal protein L4 [Brucella abortus]
gi|82798176|gb|ABB91840.1| ribosomal protein L4 [Brucella abortus]
gi|82798178|gb|ABB91841.1| ribosomal protein L4 [Brucella abortus]
gi|82798180|gb|ABB91842.1| ribosomal protein L4 [Brucella canis]
gi|82798182|gb|ABB91843.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis]
gi|82798184|gb|ABB91844.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis]
gi|82798186|gb|ABB91845.1| ribosomal protein L4 [Brucella melitensis biovar Melitensis]
gi|82798188|gb|ABB91846.1| ribosomal protein L4 [Brucella neotomae 5K33]
gi|82798190|gb|ABB91847.1| ribosomal protein L4 [Brucella ovis]
gi|82798192|gb|ABB91848.1| ribosomal protein L4 [Brucella suis 1330]
gi|82798194|gb|ABB91849.1| ribosomal protein L4 [Brucella suis ATCC 23445]
gi|82798196|gb|ABB91850.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686]
gi|82798198|gb|ABB91851.1| ribosomal protein L4 [Brucella suis bv. 4 str. 40]
gi|82798200|gb|ABB91852.1| ribosomal protein L4 [Brucella suis]
gi|82798202|gb|ABB91853.1| ribosomal protein L4 [Brucella pinnipedialis]
gi|82798204|gb|ABB91854.1| ribosomal protein L4 [Brucella ceti]
gi|148370659|gb|ABQ60638.1| ribosomal protein L4 [Brucella ovis ATCC 25840]
gi|161335999|gb|ABX62304.1| 50S ribosomal protein L4 [Brucella canis ATCC 23365]
gi|163674221|gb|ABY38332.1| 50S ribosomal protein L4 [Brucella suis ATCC 23445]
gi|189019953|gb|ACD72675.1| Ribosomal protein L4/L1e [Brucella abortus S19]
gi|225617707|gb|EEH14752.1| 50S ribosomal protein L4 [Brucella ceti str. Cudo]
gi|225641094|gb|ACO01008.1| 50S ribosomal protein L4 [Brucella melitensis ATCC 23457]
gi|237788949|gb|EEP63160.1| 50S ribosomal protein L4 [Brucella abortus str. 2308 A]
gi|260095741|gb|EEW79618.1| ribosomal protein L4 [Brucella abortus NCTC 8038]
gi|260151584|gb|EEW86678.1| ribosomal protein L4/L1e [Brucella melitensis bv. 1 str. 16M]
gi|260155757|gb|EEW90837.1| ribosomal protein L4/L1e [Brucella suis bv. 4 str. 40]
gi|260668509|gb|EEX55449.1| ribosomal protein L4 [Brucella abortus bv. 4 str. 292]
gi|260672449|gb|EEX59270.1| ribosomal protein L4 [Brucella abortus bv. 2 str. 86/8/59]
gi|260675083|gb|EEX61904.1| ribosomal protein L4 [Brucella abortus bv. 6 str. 870]
gi|260873512|gb|EEX80581.1| ribosomal protein L4 [Brucella abortus bv. 9 str. C68]
gi|260915836|gb|EEX82697.1| ribosomal protein L4 [Brucella abortus bv. 3 str. Tulya]
gi|260924669|gb|EEX91237.1| ribosomal protein L4 [Brucella ceti M13/05/1]
gi|261294765|gb|EEX98261.1| ribosomal protein L4 [Brucella ceti M644/93/1]
gi|261297089|gb|EEY00586.1| ribosomal protein L4 [Brucella pinnipedialis B2/94]
gi|261301299|gb|EEY04796.1| ribosomal protein L4 [Brucella neotomae 5K33]
gi|261303073|gb|EEY06570.1| ribosomal protein L4 [Brucella pinnipedialis M163/99/10]
gi|261738408|gb|EEY26404.1| ribosomal protein L4 [Brucella sp. F5/99]
gi|261742294|gb|EEY30220.1| ribosomal protein L4 [Brucella suis bv. 5 str. 513]
gi|261744953|gb|EEY32879.1| ribosomal protein L4 [Brucella suis bv. 3 str. 686]
gi|262766259|gb|EEZ12048.1| ribosomal protein L4 [Brucella melitensis bv. 3 str. Ether]
gi|263002093|gb|EEZ14668.1| ribosomal protein L4 [Brucella melitensis bv. 1 str. Rev.1]
gi|263093909|gb|EEZ17843.1| ribosomal protein L4 [Brucella melitensis bv. 2 str. 63/9]
gi|264661092|gb|EEZ31353.1| ribosomal protein L4 [Brucella pinnipedialis M292/94/1]
gi|297175707|gb|EFH35054.1| 50S ribosomal protein L4/L1 [Brucella abortus bv. 5 str. B3196]
gi|306275579|gb|EFM57311.1| 50S ribosomal protein L4 [Brucella inopinata BO1]
gi|306289701|gb|EFM60890.1| 50S ribosomal protein L4 [Brucella sp. BO2]
gi|326409254|gb|ADZ66319.1| Ribosomal protein L4/L1e [Brucella melitensis M28]
gi|326538962|gb|ADZ87177.1| 50S ribosomal protein L4 [Brucella melitensis M5-90]
gi|340559309|gb|AEK54547.1| 50S ribosomal protein L4 [Brucella pinnipedialis B2/94]
gi|343383077|gb|AEM18569.1| 50S ribosomal protein L4 [Brucella suis 1330]
gi|349743278|gb|AEQ08821.1| 50S ribosomal protein L4 [Brucella melitensis NI]
gi|358258502|gb|AEU06237.1| 50S ribosomal protein L4 [Brucella suis VBI22]
gi|363400644|gb|AEW17614.1| 50S ribosomal protein L4 [Brucella abortus A13334]
gi|363404723|gb|AEW15018.1| 50S ribosomal protein L4 [Brucella canis HSK A52141]
gi|374539530|gb|EHR11034.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI474]
gi|374542905|gb|EHR14389.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI435a]
gi|374543521|gb|EHR15003.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI486]
gi|374545580|gb|EHR17041.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI488]
gi|374548946|gb|EHR20393.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI010]
gi|374549577|gb|EHR21020.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI016]
gi|374558339|gb|EHR29732.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI259]
gi|374559637|gb|EHR31022.1| 50S ribosomal protein L4 [Brucella abortus bv. 1 str. NI021]
Length = 206
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
>gi|420241691|ref|ZP_14745801.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF080]
gi|398069950|gb|EJL61275.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF080]
Length = 206
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVALSDEIFGLDPREDILARMVRWQLAKKQQGTHKTKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR L L+ ALSA+ +++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALALRHALSAKMKAEDIII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + T VL G + KLA QN+ V+VLP
Sbjct: 125 VDNLVAAEAKTKALAGSFASLGLT-NVLFIGGVELDSNFKLAAQNIPNVDVLP 176
>gi|456356077|dbj|BAM90522.1| 50S ribosomal protein L4 [Agromonas oligotrophica S58]
Length = 206
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRADIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR + LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRAMALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ + + KTK ++ +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLT-NALIIDGAELHNGFAAAARNIPNMDVLP 176
>gi|418937871|ref|ZP_13491458.1| ribosomal protein L4/L1e [Rhizobium sp. PDO1-076]
gi|375055420|gb|EHS51681.1| ribosomal protein L4/L1e [Rhizobium sp. PDO1-076]
Length = 206
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V ++ G + L+ D+F + R+DII R++RWQLA ++QGTH TKT +EVS TG K +
Sbjct: 5 VKTLEGKEAGKVSLSDDIFGLDPREDIIARMIRWQLANKRQGTHKTKTRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+ L++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKSEDLII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ L KTK +V + + T L+ G I KLA N+ ++VLP
Sbjct: 125 IDQLISAEAKTKALVGTFELLGLT-NALVIGGAEIDSNFKLAAANIPNIDVLP 176
>gi|301118172|ref|XP_002906814.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4]
gi|262108163|gb|EEY66215.1| 50S ribosomal protein L4 [Phytophthora infestans T30-4]
Length = 277
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 110/188 (58%), Gaps = 8/188 (4%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + + G+VF P R DI+ RVVRWQLA R+ GT+ TKT SEVSG+ +KPW+QKG+G
Sbjct: 80 QDLGSISMDGEVFGAPDRVDILQRVVRWQLACRRAGTNKTKTRSEVSGSTRKPWKQKGSG 139
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G +R PQ+RGG +HGP R + L KKVR +GL++ALS + EGKL + + L+V
Sbjct: 140 RARVGDIRAPQWRGGYRVHGPVLRDFSYSLPKKVRAMGLRVALSTKLREGKLAIVDSLDV 199
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIY 288
KTK + L G + LAT+N+ +V+ L Q+ +
Sbjct: 200 DITKTKDMKKLLGG-RGWDHALFVGGEEVESSFVLATRNIPHVDTL-------AQNKINV 251
Query: 289 YYFLDFDF 296
Y L D
Sbjct: 252 YSILQKDL 259
>gi|333980408|ref|YP_004518353.1| 50S ribosomal protein L4 [Desulfotomaculum kuznetsovii DSM 6115]
gi|333823889|gb|AEG16552.1| ribosomal protein L4/L1e [Desulfotomaculum kuznetsovii DSM 6115]
Length = 208
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/152 (46%), Positives = 99/152 (65%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L DVF VP+ ++H V WQLA R+ GTH TKT +EV G G+K
Sbjct: 4 VAVYNINGDQVGEIHLRDDVFGVPVHMSVLHDAVVWQLAGRRLGTHDTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRARHG++R P +R G + GP PR ++ +L +KVRRL +K ALSA+ +GK+
Sbjct: 64 PWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYRLPRKVRRLAMKSALSAKVQDGKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V EDL++ +TK +V ++ K L+
Sbjct: 124 VVLEDLKLEQPRTKDMVRILGNLKVNDKALVV 155
>gi|414342981|ref|YP_006984502.1| protein RplD [Gluconobacter oxydans H24]
gi|411028316|gb|AFW01571.1| RplD [Gluconobacter oxydans H24]
gi|453330316|dbj|GAC87544.1| 50S ribosomal protein L4 [Gluconobacter thailandicus NBRC 3255]
Length = 204
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVSPRADIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +AA+GKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ S KT+ + L+ D G + E+ A NL ++VLP++
Sbjct: 125 LDTANGVS-KTREAAAKLKAL-GWSSALIVD-GAVDEQFARAIANLPKIDVLPTI 176
>gi|365896256|ref|ZP_09434338.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. STM 3843]
gi|365422969|emb|CCE06880.1| 50S ribosomal subunit protein L4 [Bradyrhizobium sp. STM 3843]
Length = 206
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLDPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ + + KTK +V +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 DLIVLENATLEAAKTKALVGHFSGLGLT-NALIIDGAELHGGFANAARNIPNMDVLP 176
>gi|153009287|ref|YP_001370502.1| 50S ribosomal protein L4 [Ochrobactrum anthropi ATCC 49188]
gi|404318989|ref|ZP_10966922.1| 50S ribosomal protein L4 [Ochrobactrum anthropi CTS-325]
gi|166234695|sp|A6X0B9.1|RL4_OCHA4 RecName: Full=50S ribosomal protein L4
gi|151561175|gb|ABS14673.1| ribosomal protein L4/L1e [Ochrobactrum anthropi ATCC 49188]
Length = 206
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRSHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + L+ G I + A N+ ++VLP
Sbjct: 123 IIIDDLAATEAKTKQLVSQFAKL-GLENALVIGGAEIDVNFQRAASNIPNIDVLP 176
>gi|384918430|ref|ZP_10018507.1| 50S ribosomal protein L4 [Citreicella sp. 357]
gi|384467684|gb|EIE52152.1| 50S ribosomal protein L4 [Citreicella sp. 357]
Length = 205
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L +FD+ R DI+HRVVRWQ K Q GTH KT SEVS + KK
Sbjct: 3 LDVINLDGSAAGEVELTDGIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ + P FR G GP PRSHA +L KKVR LGLK+ALSA+A G L
Sbjct: 63 IYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHELPKKVRALGLKMALSAKAKAGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ D KTK + + K+ L+ DG ++E A N+ ++VLPS+
Sbjct: 123 VII-DAATSEGKTKALAAQVKNL-GWKRALIIDGADVNENFVTAAANIEGLDVLPSM 177
>gi|222148367|ref|YP_002549324.1| 50S ribosomal protein L4 [Agrobacterium vitis S4]
gi|254803708|sp|B9JVN8.1|RL4_AGRVS RecName: Full=50S ribosomal protein L4
gi|221735355|gb|ACM36318.1| 50S ribosomal protein L4 [Agrobacterium vitis S4]
Length = 206
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V D G + L+ +F + R+DII R+VRWQLAK+QQGTH TKT +EVS TG K
Sbjct: 3 LNVKTLEGTDAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L KKVR L L+ ALSA+ +L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALALRHALSAKFKADEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ + L KTK V + + K L+ G + KLA N+ ++VLP
Sbjct: 123 IIVDQLVAADAKTKAAVGVFEAL-GLKNALVIGGVELDVNFKLAAANIPNIDVLP 176
>gi|85057801|ref|YP_456717.1| 50S ribosomal protein L4 [Aster yellows witches'-broom phytoplasma
AYWB]
gi|109893576|sp|Q2NIV5.1|RL4_AYWBP RecName: Full=50S ribosomal protein L4
gi|84789906|gb|ABC65638.1| LSU ribosomal protein L1E [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 207
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 101 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ + VLA VFD+ + +++ VV Q A +QGTH+TKT + V+G
Sbjct: 1 MPKINILNQQGDLVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHG++R P +RGG GP PR++++K+N+KVR L LK ALS +
Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRNYSVKVNQKVRILALKSALSLQVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
+L+V +++ + +HKTK ++ T K L+ + E+L LA++NL Y+
Sbjct: 121 NQLVVLDNINLATHKTKDFQQMLQKLNITSKSLIVVTQ-MTEQLALASRNLSYI 173
>gi|194246734|ref|YP_002004373.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali]
gi|254803748|sp|B3QZZ2.1|RL4_PHYMT RecName: Full=50S ribosomal protein L4
gi|193807091|emb|CAP18529.1| 50S ribosomal protein L4 [Candidatus Phytoplasma mali]
Length = 207
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 115/191 (60%), Gaps = 5/191 (2%)
Query: 101 IPVTNFFNEDKGFMV---LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ F+ L ++F + I K +++ VV Q A +QGTH+TK + VSG
Sbjct: 1 MPKYNLINQKGDFLSQIDLDDEIFGISINKQVLYDVVNAQRASMRQGTHATKNRALVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHGT+R P +RGG GP PR +++K+N+KVRRL LK+ALS +
Sbjct: 61 GKKPWRQKGTGRARHGTIRSPLWRGGGVAFGPSPRDYSVKVNQKVRRLALKMALSWKINN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ +++ + +HKTK N +Q+ +K L+ H L L+ +NL V +L +V
Sbjct: 121 KNLILIDNINLETHKTKEFQNILDQLNIQQKTLILTKDLNHN-LCLSIRNLSKV-LLETV 178
Query: 278 VRSTTQSFLIY 288
+ L Y
Sbjct: 179 SHVSVYQLLSY 189
>gi|357032625|ref|ZP_09094560.1| 50S ribosomal protein L4 [Gluconobacter morbifer G707]
gi|356413616|gb|EHH67268.1| 50S ribosomal protein L4 [Gluconobacter morbifer G707]
Length = 204
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R D++ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGTVALPEEIFAVSPRADLMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +A EGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKATEGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
E + KT+ + L+ D G + E+ A NL ++VLP++
Sbjct: 125 LETASGVT-KTREAAAKLKAL-GWSSALIVD-GAVDEQFARAVANLPKIDVLPTI 176
>gi|407788310|ref|ZP_11135442.1| 50S ribosomal protein L4 [Celeribacter baekdonensis B30]
gi|407197591|gb|EKE67645.1| 50S ribosomal protein L4 [Celeribacter baekdonensis B30]
Length = 206
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ Q GTH KT SEVS + KK +RQKGTG AR
Sbjct: 14 GTLDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSH +L KK R+LGLK ALSA+A G L++ ED ++
Sbjct: 74 HGSRKAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLKHALSAKAGSGNLVILEDAKLAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT F+ + + K+VL+ DG I K A N+ V++LP++
Sbjct: 134 KTAFLAKAIKE-QGWKRVLIIDGAEIDANFKAAAANIAGVDILPTM 178
>gi|424894638|ref|ZP_18318212.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM2297]
gi|393178865|gb|EJC78904.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM2297]
Length = 206
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 125 IDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|451942180|ref|YP_007462817.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451901567|gb|AGF76029.1| 50S ribosomal protein L4 [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 207
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL++ + + G + ++ +F + R+DI+ RV+RWQLA+RQQGTH ++ S+VS T
Sbjct: 3 DLIVKTLD--GNEAGKLKVSEGIFGLVPREDILQRVIRWQLARRQQGTHQSQGRSDVSRT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LG+++ALSA+
Sbjct: 61 GAKMFKQKGTGRARHSSARVPQFRGGGKAHGPVFRSHACDLPKKVRALGVRLALSAKLKA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V +DL V KTK +V+ ++++ LL I A N+ ++VLP
Sbjct: 121 NDLIVVDDLSVKDAKTKMLVSSFSKL-GFNNALLVGSKEIDVNFSRAASNIPNIDVLP 177
>gi|49474403|ref|YP_032445.1| 50S ribosomal protein L4 [Bartonella quintana str. Toulouse]
gi|81646966|sp|Q6FZC3.1|RL4_BARQU RecName: Full=50S ribosomal protein L4
gi|49239907|emb|CAF26305.1| 50s ribosomal protein l4 [Bartonella quintana str. Toulouse]
Length = 206
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 112/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RVVRWQLA+ QQGTH ++ S+VS T
Sbjct: 2 DLVIRTLD--GNEAGRLKVSESIFGLVPREDILQRVVRWQLARHQQGTHHSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRVLGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ ++L V KTK +V+ ++++ K LL G I A N+ +++LP
Sbjct: 120 NDLIIVDELNVKEAKTKMLVSCFSKL-GFKNALLVGGKEIDINFSRAASNIPNIDILP 176
>gi|403743621|ref|ZP_10953173.1| 50S ribosomal protein L4/L1e [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122651|gb|EJY56856.1| 50S ribosomal protein L4/L1e [Alicyclobacillus hesperidum
URH17-3-68]
Length = 206
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + + L+ +F P+R D++H+VV LA R+ GTH K + VSG G+K
Sbjct: 4 VAVLNTAGQQVSELQLSDKIFGAPVRLDLMHQVVLQYLAARRAGTHKVKNRAAVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ++GG + GP PRS+A + KKVRRL L ALS++ AEGK+
Sbjct: 64 PWRQKGTGRARQGSIRAPQWKGGGVVFGPTPRSYAFSVPKKVRRLALYSALSSKVAEGKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG 254
+V +DL++ KTK +V+ + N K L+ DG
Sbjct: 124 IVLDDLQLNQPKTKEMVSVLKNL-NVGKALIVDG 156
>gi|190891356|ref|YP_001977898.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652]
gi|226730712|sp|B3PWS2.1|RL4_RHIE6 RecName: Full=50S ribosomal protein L4
gi|190696635|gb|ACE90720.1| 50S ribosomal protein L4 [Rhizobium etli CIAT 652]
Length = 206
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V ++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 121 DVIVIDNLVATEAKTKALASAFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|395789499|ref|ZP_10469019.1| 50S ribosomal protein L4 [Bartonella taylorii 8TBB]
gi|395430042|gb|EJF96094.1| 50S ribosomal protein L4 [Bartonella taylorii 8TBB]
Length = 206
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RV+ WQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GNEAGKLKVSEAIFGLVPREDILQRVILWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVTRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + L V KTK +V++++++ LL G I A N+ V++LP
Sbjct: 120 KDLIVVDALSVKDAKTKMLVSHFSKL-GIDNALLIGGKEIDINFSRAASNIPNVDILP 176
>gi|73667227|ref|YP_303243.1| 50S ribosomal protein L4 [Ehrlichia canis str. Jake]
gi|109893593|sp|Q3YRL0.1|RL4_EHRCJ RecName: Full=50S ribosomal protein L4
gi|72394368|gb|AAZ68645.1| LSU ribosomal protein L4P [Ehrlichia canis str. Jake]
Length = 205
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 111/177 (62%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N ++ G + L +F V R DI+ VV WQL+KR+ GTH KTI ++SGT K
Sbjct: 3 VSIINVNSDKIGTIDLNPLIFSVDYRPDILKMVVNWQLSKRRAGTHKAKTIGDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP R+HA LNKKVR+LGLK+ALS + + KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRNHAYSLNKKVRKLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+ + ++V KT ++ + E+ K L+ D ++ + + +NLH V +L +
Sbjct: 123 LILDSIDVNFVKTTQVLQFIRNFEH-KSFLIIDKD-YNKNVVCSCRNLHNVTLLKQI 177
>gi|328543359|ref|YP_004303468.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1]
gi|326413104|gb|ADZ70167.1| 50S ribosomal protein L4 [Polymorphum gilvum SL003B-26A1]
Length = 206
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V G + ++ ++F + R D+IHRVVRWQLAKRQ GTH K SEVSGT
Sbjct: 1 MELEVKTLDGSAAGSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKAKGRSEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK RQKG+G ARHG + PQFRGG GP R H L KKVR LGL ALS +A G
Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFRGGGKAFGPVVRDHGHDLPKKVRALGLAHALSTKAKAG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ ED + KTK + + ++ + L+ DG + LA +N+ V+VLP
Sbjct: 121 SLIIVEDAKAGEAKTKALKEKFGKL-GLQSALIIDGSELDANFALAARNIPAVDVLP 176
>gi|116251541|ref|YP_767379.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. viciae 3841]
gi|424874859|ref|ZP_18298521.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae WSM1455]
gi|424881131|ref|ZP_18304763.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WU95]
gi|166199852|sp|Q1MIE0.1|RL4_RHIL3 RecName: Full=50S ribosomal protein L4
gi|115256189|emb|CAK07270.1| putative 50S ribosomal protein L4 [Rhizobium leguminosarum bv.
viciae 3841]
gi|392517494|gb|EIW42226.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WU95]
gi|393170560|gb|EJC70607.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae WSM1455]
Length = 206
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 125 IDNLVAAEAKTKSLASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|103488294|ref|YP_617855.1| 50S ribosomal protein L4 [Sphingopyxis alaskensis RB2256]
gi|123252916|sp|Q1GPA0.1|RL4_SPHAL RecName: Full=50S ribosomal protein L4
gi|98978371|gb|ABF54522.1| LSU ribosomal protein L4P [Sphingopyxis alaskensis RB2256]
Length = 208
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 99/159 (62%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
DVF + R DI+HRVV WQL KR+ + + S+V+ TGKK RQKG G ARHG R P
Sbjct: 21 DVFGLDARADILHRVVAWQLEKRRGPARAARERSDVARTGKKFGRQKGGGTARHGDRRAP 80
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
F GG HGP+ R+ LNKK+R LGLK+ALS +A GKL+V + LE+ KTK +
Sbjct: 81 IFIGGGKAHGPRARTFGHSLNKKIRTLGLKMALSDKAKGGKLVVIDTLELKDAKTKALAG 140
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++ K+ L DG +HE +A+ NL V+ LP++
Sbjct: 141 KLGKLDLGKRALFIDGDAVHESFAMASANLIGVDALPAI 179
>gi|294852569|ref|ZP_06793242.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026]
gi|294821158|gb|EFG38157.1| 50S ribosomal protein L4/L1 [Brucella sp. NVSL 07-0026]
Length = 206
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ +++LP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDMLP 176
>gi|424890778|ref|ZP_18314377.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM2012]
gi|393172996|gb|EJC73041.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. trifolii WSM2012]
Length = 206
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 125 IDNLVATEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|57239335|ref|YP_180471.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
gi|58579301|ref|YP_197513.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
gi|81557285|sp|Q5HAS3.1|RL4_EHRRW RecName: Full=50S ribosomal protein L4
gi|57161414|emb|CAH58338.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
gi|58417927|emb|CAI27131.1| 50S ribosomal protein L4 [Ehrlichia ruminantium str. Welgevonden]
Length = 205
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 110/177 (62%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSGT K
Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRIGAHKTKTIGDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP R+HA LNKKVR LGLK+ALS + + KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRTHAYSLNKKVRNLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+ + ++V KT ++ + E+ + L G ++ + + +NLH V +L +
Sbjct: 123 LILDSIDVNFVKTAQVLRFIKNFEH--QSFLIIGKDYNKGMMYSCKNLHNVTLLKQI 177
>gi|86749416|ref|YP_485912.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris HaA2]
gi|109893629|sp|Q2IXQ9.1|RL4_RHOP2 RecName: Full=50S ribosomal protein L4
gi|86572444|gb|ABD07001.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris HaA2]
Length = 206
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R DI+ R V WQLAKRQ GTH K +EV TG
Sbjct: 1 MELKVTTLEGQEAGSVQLSDAIFGLEPRNDIVQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRALALRHALSAKAKGG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + E+ + KTK +V ++ + T L+ DG ++ A +N+ ++VLP
Sbjct: 121 GLIVIDKAELEAAKTKALVGAFSGLGLT-NALIIDGAEVNTGFATAARNIPNIDVLP 176
>gi|265984290|ref|ZP_06097025.1| ribosomal protein L4 [Brucella sp. 83/13]
gi|306838042|ref|ZP_07470900.1| 50S ribosomal protein L4 [Brucella sp. NF 2653]
gi|264662882|gb|EEZ33143.1| ribosomal protein L4 [Brucella sp. 83/13]
gi|306406966|gb|EFM63187.1| 50S ribosomal protein L4 [Brucella sp. NF 2653]
Length = 206
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLAHRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
>gi|241204166|ref|YP_002975262.1| 50S ribosomal protein L4 [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858056|gb|ACS55723.1| ribosomal protein L4/L1e [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 206
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +E+S TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEISRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 125 IDNLVAAEAKTKSLASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|91977651|ref|YP_570310.1| 50S ribosomal protein L4 [Rhodopseudomonas palustris BisB5]
gi|123762621|sp|Q134T0.1|RL4_RHOPS RecName: Full=50S ribosomal protein L4
gi|91684107|gb|ABE40409.1| LSU ribosomal protein L4P [Rhodopseudomonas palustris BisB5]
Length = 206
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DI+ R V WQLAKRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIVQRCVIWQLAKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRALALRHALSAKAKGG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + E+ + KTK +V ++ + T L+ DG ++ A +N+ ++VLP
Sbjct: 121 GLIVIDKAELEAAKTKALVGAFSGLGLT-NALIIDGAEVNNGFATAARNIPNIDVLP 176
>gi|384500965|gb|EIE91456.1| hypothetical protein RO3G_16167 [Rhizopus delemar RA 99-880]
Length = 247
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 112/169 (66%), Gaps = 4/169 (2%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
NE + L +VF VPIR+DI+HRVV WQ +QGT STKT +EVSGTGKK QKG
Sbjct: 48 NEPVSIINLEKEVFGVPIRRDILHRVVVWQRDSMRQGTSSTKTRAEVSGTGKKAAPQKGR 107
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
G+AR G ++ P FR G GPKPR H+ L +KV+ LGL++ALSA+ A+ +L+V E L+
Sbjct: 108 GKARVGDMKAPHFRSGGIAFGPKPRDHSTDLPRKVQDLGLRVALSAKYAQDQLIVVESLQ 167
Query: 228 -VPSHKTKFIVNYY-NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+ SHKT+ + + N E++K +++ D +++ L++A +NL V+
Sbjct: 168 NLESHKTRDLADIIKNSYESSKILIIIDE--LNKNLEMAARNLPNCEVI 214
>gi|260425505|ref|ZP_05779485.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45]
gi|260423445|gb|EEX16695.1| ribosomal protein, L4/L1 family [Citreicella sp. SE45]
Length = 205
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD+ R DI+HRVVRWQ K Q GTH KT SEVS + KK +RQKGTG AR
Sbjct: 14 GEVELTDEIFDLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KKVR LGLK+ALSA+A G L+V D
Sbjct: 74 HGSRKAPIFRKGGIYKGPTPRSHAHDLPKKVRALGLKMALSAKAKSGALVVI-DTADSEG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK + + K+ L+ DG ++E A N+ ++VLPS+
Sbjct: 133 KTKALAAQVKSL-GWKRALIIDGAAVNEAFAKAAANIDGLDVLPSM 177
>gi|49475793|ref|YP_033834.1| 50S ribosomal protein L4 [Bartonella henselae str. Houston-1]
gi|81647792|sp|Q6G2W6.1|RL4_BARHE RecName: Full=50S ribosomal protein L4
gi|49238600|emb|CAF27841.1| 50S ribosomal protein l4 [Bartonella henselae str. Houston-1]
Length = 206
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + + G + ++ VF + R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLLIKTLD--GNEVGKLKVSESVFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL+ ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHTLPKKIRALGLRFALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++ V KT+ +V+ ++++ LL G + AT N+ +++LP
Sbjct: 120 DDLIVVDEFNVKDAKTRMLVSCFSKL-GFDNALLIGGNEVDLNFSRATSNIPNIDILP 176
>gi|410668886|ref|YP_006921257.1| 50S ribosomal protein L4 [Thermacetogenium phaeum DSM 12270]
gi|409106633|gb|AFV12758.1| 50S ribosomal protein L4 [Thermacetogenium phaeum DSM 12270]
Length = 209
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 100/157 (63%), Gaps = 3/157 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN + G + L DVF VP+ + ++H+ V LA R+ GT +TKT EV GT
Sbjct: 1 MPKAALFNTEGVRIGEVELRDDVFGVPVNEHVLHQAVVRHLANRRAGTAATKTRGEVQGT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R P +RGG + GP+PRS+ + +K+RRL LK ALSARA E
Sbjct: 61 GRKPWRQKGTGRARVGSIRSPLWRGGGIVFGPQPRSYRQAMPRKMRRLALKSALSARANE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG 254
G ++V ED+++P KTK + ++ L+ G
Sbjct: 121 GAMIVIEDIQLPEPKTKEAIKLLQSLDAVSNALIVTG 157
>gi|88608608|ref|YP_506158.1| 50S ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama]
gi|109893610|sp|Q2GED8.1|RL4_NEOSM RecName: Full=50S ribosomal protein L4
gi|88600777|gb|ABD46245.1| ribosomal protein L4 [Neorickettsia sennetsu str. Miyayama]
Length = 214
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 101/173 (58%), Gaps = 8/173 (4%)
Query: 110 DKGFMVLAGDV------FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
D G LAG V + P R D++ V+ WQLAKR+ GTH TK ISEVSGT +KP+R
Sbjct: 10 DFGASSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYR 69
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QKGTGRAR G+LR PQFR G + GP R H +NKKVR L L+ ALS R AEG+L V
Sbjct: 70 QKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSLALRSALSMRFAEGRLFVL 129
Query: 224 EDLEVPSHKTKFIVNYY--NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
E + K ++ ++ N + K L +E L A NLH+V VL
Sbjct: 130 ESSRLGESKAATLLKWFASNAELSVGKKFLIVTEEKNEGLLRAASNLHWVKVL 182
>gi|436842983|ref|YP_007327361.1| ribosomal protein L4 [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432171889|emb|CCO25262.1| ribosomal protein L4 [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 206
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 114/176 (64%), Gaps = 2/176 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + N++ G M LA +VF+VP++ +I+H VVR QLA ++ GTH+TKT G G K
Sbjct: 4 ITIYDQTNKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRSGTHATKTRGMKRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG T GP+PR ++ K+NKKVR L LK+AL+++ +E KL
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRALALKMALTSKLSEEKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V + +++P KTK + + K +++ KL L+ +N+ + ++ +
Sbjct: 124 MVVKSIDLPEIKTKLFADVAETLGLYKALIVVKDA--DNKLLLSARNIPGIKLISA 177
>gi|409436835|ref|ZP_11263994.1| 50S ribosomal subunit protein L4 [Rhizobium mesoamericanum STM3625]
gi|408751309|emb|CCM75148.1| 50S ribosomal subunit protein L4 [Rhizobium mesoamericanum STM3625]
Length = 206
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K ++VS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHQAKGRADVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ +++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHDLPKKVRALGLRHALSAKLKSDDVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 125 IDSLVAAEAKTKALASAFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|395790887|ref|ZP_10470346.1| 50S ribosomal protein L4 [Bartonella alsatica IBS 382]
gi|395409183|gb|EJF75782.1| 50S ribosomal protein L4 [Bartonella alsatica IBS 382]
Length = 206
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + ++ G + ++ +F + R+DI+ RVVRWQLA RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GDEAGKLKVSDAIFGLVPREDILQRVVRWQLAHRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSH L KK+R LGL+ ALSA+ E
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHTHDLPKKIRALGLRFALSAKLKE 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V +++ + KTK +V+ ++++ LL G I A N+ +++LP
Sbjct: 120 KNLIVVDEMSIKDVKTKVLVSCFSKL-GFNNALLIGGRDIDINFSRAASNIPNIDILP 176
>gi|110180290|gb|ABG54388.1| 23S ribosomal protein L4 [Brucella pinnipedialis]
Length = 206
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRA H + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRASHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
>gi|403530689|ref|YP_006665218.1| 50S ribosomal protein L4 [Bartonella quintana RM-11]
gi|403232760|gb|AFR26503.1| 50S ribosomal protein L4 [Bartonella quintana RM-11]
Length = 206
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RVVRWQLA+ QQGTH ++ S+VS T
Sbjct: 2 DLVIRTLD--GNEAGRLKVSESIFGLIPREDILQRVVRWQLARHQQGTHHSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKIRVLGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ ++ V KTK +V+ ++++ K LL G I A N+ +++LP
Sbjct: 120 NDLIIVDEFNVKEAKTKMLVSCFSKL-GFKNALLVGGKEIDINFSRAASNIPNIDILP 176
>gi|402497078|ref|YP_006556338.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Onchocerca
ochengi]
gi|398650351|emb|CCF78521.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Onchocerca
ochengi]
Length = 204
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
D G + L +F V + I+H +V WQLAKR+ GTH T+ IS++SGT KP+ QK TGR
Sbjct: 12 DVGVVQLNPLIFFVKQKLSILHDIVTWQLAKRRAGTHKTRGISDISGTTAKPYSQKRTGR 71
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G+LR PQFRGG + GP RSHA LNKKVR+LGLKIALS + +++V + L++
Sbjct: 72 ARQGSLRSPQFRGGEIVFGPVVRSHAYSLNKKVRKLGLKIALSLKYFNNQIIVLDSLDIN 131
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + + + +++ D G + L T+NLH++N++ +
Sbjct: 132 MEKTSEVCKFIKNFKFSSFLMVGDYG---DNLLRITRNLHHINLIKPI 176
>gi|347760287|ref|YP_004867848.1| 50S ribosomal protein L4 [Gluconacetobacter xylinus NBRC 3288]
gi|347579257|dbj|BAK83478.1| LSU ribosomal protein L4P [Gluconacetobacter xylinus NBRC 3288]
Length = 204
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 103/175 (58%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G L ++F V R DI+ RVV WQLAKR+ GTH K + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGTASLPDEIFAVTPRNDIMARVVHWQLAKRRAGTHKVKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
D S K+ + + T L+ D + E A +NL +++LP++
Sbjct: 125 L-DAATASGKSAELAKKLKVLGWT-SALIVD-AAVEENFGRAARNLPKIDILPTI 176
>gi|119383512|ref|YP_914568.1| 50S ribosomal protein L4 [Paracoccus denitrificans PD1222]
gi|166234698|sp|A1B028.1|RL4_PARDP RecName: Full=50S ribosomal protein L4
gi|119373279|gb|ABL68872.1| LSU ribosomal protein L4P [Paracoccus denitrificans PD1222]
Length = 206
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 106/166 (63%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R D++HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GDIDLSDDIFGLEPRADLLHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KKVR LGLK ALSA+AA G+L+V + L +
Sbjct: 74 HGSRKAPIFRHGGVYKGPTPRSHAFDLPKKVRALGLKHALSAKAAAGELVVVDSLNIAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+VL+ DG ++E A +NL V+VLPS+
Sbjct: 134 KTAAVAKAVKE-NGWKRVLVIDGAEVNENFARAARNLEGVDVLPSM 178
>gi|256369656|ref|YP_003107166.1| 50S ribosomal protein L4 [Brucella microti CCM 4915]
gi|255999818|gb|ACU48217.1| 50S ribosomal protein L4 [Brucella microti CCM 4915]
Length = 206
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDADKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
>gi|110180274|gb|ABG54380.1| 23S ribosomal protein L4 [Brucella ceti]
gi|110180278|gb|ABG54382.1| 23S ribosomal protein L4 [Brucella ceti]
Length = 206
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGT RARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
>gi|405376543|ref|ZP_11030497.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF142]
gi|397326870|gb|EJJ31181.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF142]
Length = 206
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K ++V TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSEAIFGLEPREDILARVIRWQLAKKQQGTHQAKGRADVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L++ +DL KTK + + + T L G + KLA QN+ ++VLP
Sbjct: 121 ELIIIDDLVANEAKTKALAGVFATLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>gi|440226338|ref|YP_007333429.1| 50S ribosomal protein L4/L1 [Rhizobium tropici CIAT 899]
gi|440037849|gb|AGB70883.1| 50S ribosomal protein L4/L1 [Rhizobium tropici CIAT 899]
Length = 206
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RVVRWQLAK+QQGTH K ++V+ TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVVRWQLAKKQQGTHQAKGRADVARTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHDLPKKVRALGLRHALSAKFKAEDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + T L G + KLA QN+ ++VLP
Sbjct: 125 IDNLVATEAKTKALAGAFETLGLT-NALFIGGAELDSNFKLAAQNIPNIDVLP 176
>gi|398829356|ref|ZP_10587554.1| 50S ribosomal protein L4, bacterial/organelle [Phyllobacterium sp.
YR531]
gi|398216841|gb|EJN03381.1| 50S ribosomal protein L4, bacterial/organelle [Phyllobacterium sp.
YR531]
Length = 206
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T D G + L+ ++F + R DI+ R+VR+QLA++QQGTH KT SE++ TG K
Sbjct: 3 LTITTLEGADAGKLKLSEEIFGLEPRDDILQRMVRYQLARKQQGTHKAKTRSEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP SHA L KKVR L L+ ALSA+ L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVHSHAHDLPKKVRALALRHALSAKVKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I A N+ ++VLP
Sbjct: 123 IIVDDLLATEAKTKTLVSQFAKL-GLQNALLIGGAEIDVNFARAASNIPNIDVLP 176
>gi|116748991|ref|YP_845678.1| 50S ribosomal protein L4 [Syntrophobacter fumaroxidans MPOB]
gi|166199918|sp|A0LIJ1.1|RL4_SYNFM RecName: Full=50S ribosomal protein L4
gi|116698055|gb|ABK17243.1| LSU ribosomal protein L4P [Syntrophobacter fumaroxidans MPOB]
Length = 207
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 115/177 (64%), Gaps = 5/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN ++ G + L+ VF VP+R ++H VV +QLAKR+ GT TK S+V+G
Sbjct: 1 MPTVDIFNTNRDVVGQLELSDAVFAVPLRPHVLHEVVLYQLAKRRAGTVKTKGRSDVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR GT R P +RGG T+HGP+PR + +++ KKVRRL +K+ALS + +
Sbjct: 61 GKKPWRQKGTGRARAGTSRSPIWRGGGTIHGPQPRDYEMRIPKKVRRLAVKMALSQKLID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+L V + L++ KT+ ++ E +K +++ EKL+ + +N+ V VL
Sbjct: 121 RELTVLDQLQLEQIKTRDFAAILDRFELSKTLVVI--AQPDEKLQKSARNIPNVKVL 175
>gi|353328464|ref|ZP_08970791.1| 50S ribosomal protein L4 [Wolbachia endosymbiont wVitB of Nasonia
vitripennis]
gi|373449860|ref|ZP_09541953.1| 50S ribosomal subunit protein L4 [Wolbachia pipientis wAlbB]
gi|371932905|emb|CCE76940.1| 50S ribosomal subunit protein L4 [Wolbachia pipientis wAlbB]
Length = 204
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ + N + G + L +F + I+H +VRWQLAKR+ G H TK IS+VSGT KP+
Sbjct: 5 LVDLSNNNVGSVELNPLIFSAKQKLSILHDIVRWQLAKRRVGAHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLKIALS + +++V
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHAYSLNKKVRKFGLKIALSLKYLNNQVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ L V KT + Y + + +++ D G + L A +NLHYV+++ +
Sbjct: 125 LDSLNVDVKKTSKMCEYIKNFKFSSFLIVGDYG---DDLLRAAKNLHYVDLIKPI 176
>gi|339018300|ref|ZP_08644438.1| LSU ribosomal protein L4P [Acetobacter tropicalis NBRC 101654]
gi|338752577|dbj|GAA07742.1| LSU ribosomal protein L4P [Acetobacter tropicalis NBRC 101654]
Length = 204
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + N G L ++F V R DI+ RVV WQLAKR+ GTH K +++VSGT KK
Sbjct: 3 IEIKTLDNGTAGSATLPDELFAVAPRADIMARVVHWQLAKRRAGTHQVKGMADVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +A +GKL
Sbjct: 63 PYRQKGTGSARQGSLRAPQYRTGGVVHGPVSRDHGYDLPKKVRRLGLISALSQKAQDGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + + ++ V + K L+ D + E A +NL ++VLP++
Sbjct: 123 IVLQSASGVARTSELAVKL--KTLGLKSALIVD-AAVDEGFVRAARNLPKIDVLPTI 176
>gi|317485821|ref|ZP_07944685.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia
3_1_6]
gi|345887472|ref|ZP_08838652.1| 50S ribosomal protein L4 [Bilophila sp. 4_1_30]
gi|316922927|gb|EFV44149.1| ribosomal protein L4/L1 family protein [Bilophila wadsworthia
3_1_6]
gi|345041781|gb|EGW45910.1| 50S ribosomal protein L4 [Bilophila sp. 4_1_30]
Length = 206
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 11/191 (5%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ V +++DK G + L +VF+V +R +I+H VVR QLA ++ GTHSTKT + VSG
Sbjct: 1 MAVVKVYDQDKTEQGELTLTPEVFEVAVRPEILHLVVRAQLAAKRAGTHSTKTRAMVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G+ R P +RGG + GP+PR + K+NKK+R+L L++ALS+R A
Sbjct: 61 GVKPWRQKGTGRARAGSNRSPVWRGGAILFGPQPRKYDFKVNKKIRKLALRMALSSRLAG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
LLV + ++P KTK + +K +++ L L+++N LP +
Sbjct: 121 DNLLVVKGFDLPEAKTKVFAKIAGNLGLSKALIIAPEES--RNLVLSSRN------LPGI 172
Query: 278 VRSTTQSFLIY 288
+T +Y
Sbjct: 173 TLTTPDQLSVY 183
>gi|261222394|ref|ZP_05936675.1| ribosomal protein L4 [Brucella ceti B1/94]
gi|265998359|ref|ZP_06110916.1| ribosomal protein L4 [Brucella ceti M490/95/1]
gi|82798206|gb|ABB91855.1| ribosomal protein L4 [Brucella ceti]
gi|260920978|gb|EEX87631.1| ribosomal protein L4 [Brucella ceti B1/94]
gi|262552827|gb|EEZ08817.1| ribosomal protein L4 [Brucella ceti M490/95/1]
Length = 206
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKV LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
>gi|340776597|ref|ZP_08696540.1| 50S ribosomal protein L4 [Acetobacter aceti NBRC 14818]
Length = 204
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G L ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT KK
Sbjct: 3 LDIKTLDNGSAGTATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +A +GKL
Sbjct: 63 PYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + + + + V + L+ D G ++E A +NL ++VLP++
Sbjct: 123 IVLDAADGVTKTAELAVKL--KALGLTSALIVD-GTVNEGFVRAARNLPKIDVLPTI 176
>gi|451940811|ref|YP_007461449.1| 50S ribosomal protein L4 [Bartonella australis Aust/NH1]
gi|451900198|gb|AGF74661.1| 50S ribosomal protein L4 [Bartonella australis Aust/NH1]
Length = 207
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 108/178 (60%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLV+ + + G + L+ +F + R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 3 DLVVKTLD--GNEVGELKLSESIFGLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP R+HA L KK+R LGL++ALS +
Sbjct: 61 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRNHAHDLPKKIRALGLRLALSVKVKT 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ V KTK + ++++ LL G I A N+ ++VLP
Sbjct: 121 NNLVVVEEFSVQDAKTKVLAANFSKL-GFNNALLIGGREIDMSFSRAVSNIPNIDVLP 177
>gi|222085676|ref|YP_002544206.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84]
gi|398377350|ref|ZP_10535525.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. AP16]
gi|254803707|sp|B9JDS9.1|RL4_AGRRK RecName: Full=50S ribosomal protein L4
gi|221723124|gb|ACM26280.1| 50S ribosomal protein L4 [Agrobacterium radiobacter K84]
gi|397726688|gb|EJK87120.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. AP16]
Length = 206
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ +F + R+DII RV+RWQLAK++QGTH + +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDAIFGLEPREDIIARVIRWQLAKKRQGTHKAQGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL++ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+++ ++L KTK + + + T L G + KLA N+ ++VLP
Sbjct: 121 DVIILDNLVAADAKTKALAGAFETLGLT-NALFIGGAELDSNFKLAAANIPNIDVLP 176
>gi|27353674|dbj|BAC50664.1| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110]
Length = 220
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 112/179 (62%), Gaps = 1/179 (0%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+++ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+
Sbjct: 13 REMELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWR 72
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
TGKK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A
Sbjct: 73 TGKKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAK 132
Query: 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+G LLV + + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP
Sbjct: 133 DGDLLVIDKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLP 190
>gi|190571547|ref|YP_001975905.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018949|ref|ZP_03334756.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|226731443|sp|B3CN27.1|RL4_WOLPP RecName: Full=50S ribosomal protein L4
gi|190357819|emb|CAQ55275.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995058|gb|EEB55699.1| ribosomal protein L4 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 204
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ + N + G + L +F + I+H +VRWQLAKR+ G H TK IS+VSGT KP+
Sbjct: 5 LVDLSNNNVGSVELNPLIFSAKQKLSILHDIVRWQLAKRRVGAHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLKIALS + +++V
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHAYSLNKKVRKFGLKIALSLKYLNNQVVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ L V KT + Y + + +++ D G + L A +NLHYV+++ +
Sbjct: 125 LDSLNVDVKKTSKMCEYIKNFKFSSFLIVGDYG---DDLLRAAKNLHYVDLIKPI 176
>gi|398822815|ref|ZP_10581190.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
YR681]
gi|398226521|gb|EJN12768.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
YR681]
Length = 206
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDTIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP
Sbjct: 121 DLIVIEKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLP 176
>gi|399035013|ref|ZP_10732567.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF122]
gi|398067225|gb|EJL58764.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF122]
Length = 206
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K ++VS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHQAKGRADVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+ +++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHDLPKKVRALGLRHALSAKLKSDDVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + + T L G + KLA +N+ ++VLP
Sbjct: 125 IDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAKNIPNIDVLP 176
>gi|110180276|gb|ABG54381.1| 23S ribosomal protein L4 [Brucella ceti]
gi|110180280|gb|ABG54383.1| 23S ribosomal protein L4 [Brucella ceti]
Length = 206
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 106/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRA H + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRACHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
>gi|161511095|ref|NP_772039.2| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 110]
gi|384218079|ref|YP_005609245.1| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 6]
gi|46577249|sp|Q89J85.2|RL4_BRAJA RecName: Full=50S ribosomal protein L4
gi|354956978|dbj|BAL09657.1| 50S ribosomal protein L4 [Bradyrhizobium japonicum USDA 6]
Length = 206
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
LLV + + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP
Sbjct: 121 DLLVIDKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLP 176
>gi|383771136|ref|YP_005450201.1| 50S ribosomal protein L4 [Bradyrhizobium sp. S23321]
gi|381359259|dbj|BAL76089.1| 50S ribosomal protein L4 [Bradyrhizobium sp. S23321]
Length = 206
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
LLV + + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP
Sbjct: 121 DLLVIDKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLP 176
>gi|330993847|ref|ZP_08317779.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1]
gi|329759115|gb|EGG75627.1| 50S ribosomal protein L4 [Gluconacetobacter sp. SXCC-1]
Length = 204
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 102/175 (58%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G L ++F R DI+ RVV WQLAKR+ GTH K + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGTASLPDEIFAATPRPDILARVVHWQLAKRRAGTHKVKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLIFALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
D S K+ + + T L+ D + E A +NL +++LP++
Sbjct: 125 L-DAATASGKSAELAKKLKVLGWT-SALIVD-AAVEENFGRAARNLPKIDILPTI 176
>gi|386394163|ref|ZP_10078944.1| 50S ribosomal protein L4, bacterial/organelle [Desulfovibrio sp.
U5L]
gi|385735041|gb|EIG55239.1| 50S ribosomal protein L4, bacterial/organelle [Desulfovibrio sp.
U5L]
Length = 210
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 110/167 (65%), Gaps = 2/167 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
N++ G + L +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG GKKPWRQKGT
Sbjct: 11 NQEIGTVELDPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGGGKKPWRQKGT 70
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
GRAR G+ R P +RGG +HGP+PR + K+N+KVR+L L++ALSA+ + L++ + L
Sbjct: 71 GRARAGSTRSPLWRGGAVVHGPEPRDYTFKVNRKVRQLALRMALSAKLGDASLVLVDSLA 130
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
VP KTK +V + K +++ L+L+ +N+ + V+
Sbjct: 131 VPEVKTKLMVKVTSDFGLKKALIVLPAS--DNNLELSARNIPGIKVV 175
>gi|407800499|ref|ZP_11147359.1| 50S ribosomal protein L4 [Oceaniovalibus guishaninsula JLT2003]
gi|407057418|gb|EKE43394.1| 50S ribosomal protein L4 [Oceaniovalibus guishaninsula JLT2003]
Length = 206
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 104/179 (58%), Gaps = 1/179 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L ++F + R DI+HRVVRWQ QQGTH KT SE S +
Sbjct: 1 MKLDVITLDGGNAGSVDLGDEIFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FR G GP PRSH L KK R+LGL+ ALS++AA G
Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHDLTKKFRKLGLRHALSSKAATG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + +++ KT + +M K+ L+ DG ++E A N+ ++VLPS+
Sbjct: 121 NLVVLDSIDMAEAKTGALAKSIAKM-GWKRALIIDGAAVNENFARAAANIEGLDVLPSM 178
>gi|329114216|ref|ZP_08242978.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001]
gi|326696292|gb|EGE47971.1| 50S ribosomal protein L4 [Acetobacter pomorum DM001]
Length = 204
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I + N G L ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT
Sbjct: 1 MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +A +G
Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KL+V + KT + + T L+ D + E A +NL +++LP++
Sbjct: 121 KLIVLQSAS-GVDKTSELAKKLKSLGWT-SALIVD-AAVDESFGRAARNLPKIDILPTI 176
>gi|42520529|ref|NP_966444.1| 50S ribosomal protein L4 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|46577161|sp|P61071.1|RL4_WOLPM RecName: Full=50S ribosomal protein L4
gi|42410268|gb|AAS14378.1| ribosomal protein L4 [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 204
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 107/175 (61%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N++ G L +F + I+H +VRWQLAKR+ GTH TK IS+VSGT KP+
Sbjct: 5 LVNLSNDNVGAAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSH LNKKVR+ GLKIALS + ++++
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++L + KT + + + +++ D G + L A +NLHYV+++ +
Sbjct: 125 LDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYG---DDLLRAAKNLHYVDLIKPI 176
>gi|88657712|ref|YP_507228.1| 50S ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas]
gi|109893594|sp|Q2GH55.1|RL4_EHRCR RecName: Full=50S ribosomal protein L4
gi|88599169|gb|ABD44638.1| ribosomal protein L4 [Ehrlichia chaffeensis str. Arkansas]
Length = 205
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N ++ G + L +F V R DI+ VV WQL+KR+ GTH KTI ++SGT K
Sbjct: 3 VNIINVNSDRIGTIDLNPLIFSVNYRPDILKMVVDWQLSKRRAGTHKAKTIGDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVR LGLK+ALS + + KL
Sbjct: 63 PHRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+ + ++V KT ++ + E+ K L+ D ++ + + +NLH V +L +
Sbjct: 123 LILDSIDVNFVKTTQVLQFIKNFEH-KSFLIIDKD-YNKSVVCSCRNLHNVTLLKQI 177
>gi|338707689|ref|YP_004661890.1| 50S ribosomal protein L4/L1e [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336294493|gb|AEI37600.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 208
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 106/177 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + KG + L VFDV R DI+HRVV WQL KR+ T +T+ ++V+ TGKK
Sbjct: 3 VEVQSLDASQKGSIELNDAVFDVEPRADILHRVVTWQLEKRRAPTRATRERADVARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKK+R LGL++ALS++A G L
Sbjct: 63 FGRQKGGGTARHGDRRAPIFIGGGKAHGARARVFNPSLNKKLRTLGLRMALSSKAKAGAL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + L+V KTKF+ + KVL+ DG ++E A+ NL ++VLP++
Sbjct: 123 IVVDALDVDEAKTKFLATQIKSLGFGPKVLVVDGETVNENFARASSNLVGLDVLPAI 179
>gi|225630300|ref|YP_002727091.1| ribosomal protein L4 [Wolbachia sp. wRi]
gi|254803765|sp|C0R308.1|RL4_WOLWR RecName: Full=50S ribosomal protein L4
gi|225592281|gb|ACN95300.1| ribosomal protein L4 [Wolbachia sp. wRi]
Length = 204
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 107/175 (61%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N++ G L +F + I+H +VRWQLAKR+ GTH TK IS+VSGT KP+
Sbjct: 5 LVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLAKRRAGTHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSH LNKKVR+ GLKIALS + ++++
Sbjct: 65 GQKRTGRARQGSLRSPQFRGGGIIFGPVVRSHTYSLNKKVRKFGLKIALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++L + KT + + + +++ D G + L A +NLHYV+++ +
Sbjct: 125 LDNLNIDVKKTSEMCKCIKNFKFSSFLIVGDYG---DDLLRAAKNLHYVDLIKPI 176
>gi|258542028|ref|YP_003187461.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-01]
gi|384041949|ref|YP_005480693.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-12]
gi|384050464|ref|YP_005477527.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-03]
gi|384053574|ref|YP_005486668.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-07]
gi|384056806|ref|YP_005489473.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-22]
gi|384059447|ref|YP_005498575.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-26]
gi|384062741|ref|YP_005483383.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-32]
gi|384118817|ref|YP_005501441.1| 50S ribosomal protein L4 [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421848614|ref|ZP_16281601.1| LSU ribosomal protein L4P [Acetobacter pasteurianus NBRC 101655]
gi|421851615|ref|ZP_16284308.1| LSU ribosomal protein L4P [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|256633106|dbj|BAH99081.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-01]
gi|256636163|dbj|BAI02132.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-03]
gi|256639218|dbj|BAI05180.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-07]
gi|256642272|dbj|BAI08227.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-22]
gi|256645327|dbj|BAI11275.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-26]
gi|256648382|dbj|BAI14323.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-32]
gi|256651435|dbj|BAI17369.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654426|dbj|BAI20353.1| LSU ribosomal protein L4P [Acetobacter pasteurianus IFO 3283-12]
gi|371460494|dbj|GAB26804.1| LSU ribosomal protein L4P [Acetobacter pasteurianus NBRC 101655]
gi|371480118|dbj|GAB29511.1| LSU ribosomal protein L4P [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 204
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/179 (43%), Positives = 103/179 (57%), Gaps = 3/179 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I + N G L ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT
Sbjct: 1 MEIEIKTLDNSSAGSATLPDEIFAVAPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +A +G
Sbjct: 61 KKPYRQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KL+V + KT + + T L+ D + E A +NL +++LP++
Sbjct: 121 KLIVLQSAS-GVDKTSELAKKLKSLGWT-SALIVD-AAVDENFGRAARNLPKIDILPTI 176
>gi|289449461|ref|YP_003475783.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184008|gb|ADC90433.1| 50S ribosomal protein L4 [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 207
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 7/163 (4%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + + ++H+VV+ QLA R+QGT STKT SEVSG GK+PWRQKGTGRAR
Sbjct: 15 GQIELSDAVFGIEPNQSVMHQVVKNQLANRRQGTGSTKTRSEVSGGGKRPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ R Q+ GG + GPKPR + ++KKVRRL +K ALS + E +L+V E+ E+
Sbjct: 75 HGSTRSAQYVGGGIIFGPKPRDYHYTVSKKVRRLAIKSALSTKLQEKQLIVVENFELAEA 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEK---LKLATQNLHYV 271
KTK V ++ T +VL+ + +EK L+LA +N+ V
Sbjct: 135 KTKNFVTALKKLNVTDRVLVVE----NEKNVNLELAARNIAKV 173
>gi|395767222|ref|ZP_10447757.1| 50S ribosomal protein L4 [Bartonella doshiae NCTC 12862]
gi|395414535|gb|EJF80977.1| 50S ribosomal protein L4 [Bartonella doshiae NCTC 12862]
Length = 206
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 109/178 (61%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + + G + ++ +F + R+DI+ RVV WQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLIIKTLD--GNEAGKLTVSRGIFGLVPREDILQRVVLWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL +ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLCLALSVKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++L V KTK +V+ ++++ L DG I A N+ V++LP
Sbjct: 120 NDLIVIDELSVKDAKTKTLVSSFSKL-GFNNALFIDGKEIDVNFFRAASNIPNVDILP 176
>gi|412987813|emb|CCO19209.1| 50S ribosomal protein L4 [Bathycoccus prasinos]
Length = 340
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 101/158 (63%), Gaps = 16/158 (10%)
Query: 90 DITIGLHQDLVIPV----------TNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLA 139
D+ G +D +P+ + F+E +VL G FDVPIR DI HR VRWQLA
Sbjct: 99 DVEQGEMRDKTVPIHASAHIIEEKESSFDEK---IVLPGRHFDVPIRIDIAHRCVRWQLA 155
Query: 140 -KRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKL 198
KR T TK+ EVSGT +K QKG GRAR G+LR PQ RGG T HGP PR KL
Sbjct: 156 RKRGVSTAKTKSRGEVSGTTRKARPQKGGGRARVGSLRAPQMRGGGTAHGPIPRDFEHKL 215
Query: 199 NKKVRRLGLKIALSARAAEGKLLVFEDLE--VPSHKTK 234
KKVRRLGL++ALSA+AAEG+L+V EDL+ P+ KTK
Sbjct: 216 QKKVRRLGLRVALSAKAAEGRLVVVEDLKWMSPTGKTK 253
>gi|357635318|ref|ZP_09133196.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B]
gi|357583872|gb|EHJ49205.1| ribosomal protein L4/L1e [Desulfovibrio sp. FW1012B]
Length = 210
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 110/167 (65%), Gaps = 2/167 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
N++ G + L +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG GKKPWRQKGT
Sbjct: 11 NQEIGTVELDPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGGGKKPWRQKGT 70
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
GRAR G+ R P +RGG +HGP+PR + K+N+KVR+L L++ALSA+ + L++ + L
Sbjct: 71 GRARAGSTRSPLWRGGAVVHGPEPRDYTFKVNRKVRQLALRMALSAKLGDASLVLVDTLA 130
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
VP KTK +V + K +++ L+L+ +N+ + V+
Sbjct: 131 VPEVKTKLMVKVTSDFGLKKALIVLPAS--DNNLELSARNIPGIKVV 175
>gi|296447531|ref|ZP_06889453.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b]
gi|296254919|gb|EFH02024.1| ribosomal protein L4/L1e [Methylosinus trichosporium OB3b]
Length = 206
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 113/177 (63%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I VT++ ++ G + LA ++F + R D+I R++RWQLAKR+ GTH+ K ++++ TG
Sbjct: 1 MQIGVTSYDGQEAGSIELADEIFGLEPRTDLIFRMIRWQLAKRRAGTHAVKNRADIARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQF GG GP RSH L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSRRVPQFIGGGRAFGPVVRSHEHDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V+E+ + + KTK + +++ T L+ DG LA +NL ++VLP
Sbjct: 121 AIIVWENASLDAPKTKMLKAGFDKTGLT-SALIIDGAEPQVNFALAARNLPKIDVLP 176
>gi|402849274|ref|ZP_10897514.1| LSU ribosomal protein L4p (L1e) [Rhodovulum sp. PH10]
gi|402500587|gb|EJW12259.1| LSU ribosomal protein L4p (L1e) [Rhodovulum sp. PH10]
Length = 206
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V E G + L ++F + R D+I R + WQL++RQ+GTH+ K +E+ TG
Sbjct: 1 MQLDVKTLEGEAAGSIDLDQEIFGLEPRADLIQRCIVWQLSRRQRGTHAVKNRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP+ RSHAI L KKVR L L+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGSARHGSARAPQFRGGGRAFGPQVRSHAIDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V + + KTK + + + L+ DG + K +A +N+ ++VLP
Sbjct: 121 GIVVLDKAALDDGKTKTLKTRFAAL-GLDNALIIDGAELEAKFSMAARNIPNIDVLP 176
>gi|254796648|ref|YP_003081484.1| ribosomal protein L4/L1 family [Neorickettsia risticii str.
Illinois]
gi|254589885|gb|ACT69247.1| ribosomal protein L4/L1 family [Neorickettsia risticii str.
Illinois]
Length = 214
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 80/173 (46%), Positives = 99/173 (57%), Gaps = 8/173 (4%)
Query: 110 DKGFMVLAGDV------FDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
D G LAG V + P R D++ V+ WQLAKR+ GTH TK ISEVSGT +KP+R
Sbjct: 10 DFGATSLAGSVAVDRALIEAPFRPDLLSLVINWQLAKRRAGTHKTKGISEVSGTTRKPYR 69
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QKGTGRAR G+LR PQFR G + GP R H +NKKVR L ALS R AEG+L V
Sbjct: 70 QKGTGRARQGSLRAPQFRKGGIVFGPVVRQHGFSVNKKVRSFALCSALSMRFAEGRLFVL 129
Query: 224 EDLEVPSHKTKFIVNYY--NQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
E + K ++ ++ N + K L +E L A NLH+V VL
Sbjct: 130 ESCRLGESKAATLLKWFASNTELSVGKKFLIVMEEKNEDLLRAASNLHWVKVL 182
>gi|220921900|ref|YP_002497201.1| 50S ribosomal protein L4 [Methylobacterium nodulans ORS 2060]
gi|254803744|sp|B8IS86.1|RL4_METNO RecName: Full=50S ribosomal protein L4
gi|219946506|gb|ACL56898.1| ribosomal protein L4/L1e [Methylobacterium nodulans ORS 2060]
Length = 206
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 101/173 (58%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+T D G + L +F + R D++ R VRWQLAKRQ GTH KT SE+S T KK +
Sbjct: 5 ITTLDGADAGSVELDEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTTKKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GP RSHA L KKVR L L+ ALSA+A + L+V
Sbjct: 65 KQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKAKDASLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+D+ + KTK + + ++ L+ G + E A +NL ++VLP
Sbjct: 125 VDDVRLEDGKTKALKECFGKL-GLSNALIIGGTEVDENFGRAARNLPSIDVLP 176
>gi|217976766|ref|YP_002360913.1| 50S ribosomal protein L4 [Methylocella silvestris BL2]
gi|254803745|sp|B8ELG2.1|RL4_METSB RecName: Full=50S ribosomal protein L4
gi|217502142|gb|ACK49551.1| ribosomal protein L4/L1e [Methylocella silvestris BL2]
Length = 206
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I +T+ + G + L +F + R+D+I R+VR+QLAKR+ GTH TK +E++ TGKK
Sbjct: 3 IDITSLNGDSAGSIDLDDSIFGLEPRQDLIARMVRYQLAKRRAGTHKTKGRAEIARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A G +
Sbjct: 63 LYKQKGTGSARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALKHALSAKAQGGGI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V+ D KTK + + + L+ DG + + LA +N+ ++VLP
Sbjct: 123 IVWSDASATDAKTKALKASFAKA-GLLSALIIDGAEVEQNFALAARNIPQIDVLP 176
>gi|332798207|ref|YP_004459706.1| 50S ribosomal protein L4 [Tepidanaerobacter acetatoxydans Re1]
gi|438001126|ref|YP_007270869.1| LSU ribosomal protein L4p (L1e) [Tepidanaerobacter acetatoxydans
Re1]
gi|332695942|gb|AEE90399.1| ribosomal protein L4/L1e [Tepidanaerobacter acetatoxydans Re1]
gi|432177920|emb|CCP24893.1| LSU ribosomal protein L4p (L1e) [Tepidanaerobacter acetatoxydans
Re1]
Length = 208
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 119/198 (60%), Gaps = 11/198 (5%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN E G + L+ DVF V +R DI+HR V LA ++QGT +T T +EV+G
Sbjct: 1 MPKVTLFNIAGEQIGEIELSDDVFGVEVRPDIMHRAVVNYLANQRQGTANTLTRAEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHG++R P +R G + GPKPRS + KK++RL LK ALSA+ E
Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRKGGVIFGPKPRSFKSTMPKKLKRLALKSALSAKVVE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V + L + + KTK +V+ + KK L+ E ++ + +N LPS
Sbjct: 121 NELIVIDSLSMEAPKTKEMVSILKNLNADKKSLIVIAAK-DENVEKSARN------LPS- 172
Query: 278 VRSTTQSFLIYYYFLDFD 295
V++T + L Y L+ D
Sbjct: 173 VKTTYVNTLNTYDILNHD 190
>gi|374576228|ref|ZP_09649324.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
WSM471]
gi|386402176|ref|ZP_10086954.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
WSM1253]
gi|374424549|gb|EHR04082.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
WSM471]
gi|385742802|gb|EIG62998.1| 50S ribosomal protein L4, bacterial/organelle [Bradyrhizobium sp.
WSM1253]
Length = 206
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R+DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDTIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + + + KTK ++ +++ + T L+ DG ++ A +N+ ++VLP
Sbjct: 121 DLIVIDKAALEAAKTKALLGHFSGLGLT-NALIIDGAELNNGFAAAARNIPNMDVLP 176
>gi|89053075|ref|YP_508526.1| 50S ribosomal protein L4 [Jannaschia sp. CCS1]
gi|109893599|sp|Q28UW1.1|RL4_JANSC RecName: Full=50S ribosomal protein L4
gi|88862624|gb|ABD53501.1| LSU ribosomal protein L4P [Jannaschia sp. CCS1]
Length = 206
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 104/179 (58%), Gaps = 1/179 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L +F + R DI+HRVVRWQ Q GTH KT EVS +
Sbjct: 1 MKVDVIKLDGKKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRREVSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FRGG GP PRSH +L KK R+LGL+ ALSA+AAEG
Sbjct: 61 KKIYRQKGTGGARHGARSAPIFRGGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKAAEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V E + + KT + +M K+ L+ DG + A +N+ ++VLP++
Sbjct: 121 RLVVIESIAMDEAKTSALAKQVKEM-GWKRALIIDGSDVDANFAQAARNIEGLDVLPTM 178
>gi|46579715|ref|YP_010523.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602808|ref|YP_967208.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris DP4]
gi|387153062|ref|YP_005701998.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris RCH1]
gi|81566853|sp|Q72CH9.1|RL4_DESVH RecName: Full=50S ribosomal protein L4
gi|166234662|sp|A1VEB5.1|RL4_DESVV RecName: Full=50S ribosomal protein L4
gi|46449130|gb|AAS95782.1| ribosomal protein L4 [Desulfovibrio vulgaris str. Hildenborough]
gi|120563037|gb|ABM28781.1| LSU ribosomal protein L4P [Desulfovibrio vulgaris DP4]
gi|311233506|gb|ADP86360.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris RCH1]
Length = 206
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/189 (40%), Positives = 115/189 (60%), Gaps = 8/189 (4%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V + ++ G + LA +VF+V +R +I+H VVR Q A + GTH+TKT + VSG G
Sbjct: 3 VVKVYDQNKQEAGEITLAPEVFEVEVRPEILHLVVRAQRAAFRAGTHATKTRAFVSGGGL 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G++R P +RGG + GP+PR + K+NKKVR+L L++ALS+R A
Sbjct: 63 KPWRQKGTGRARAGSIRSPLWRGGAIIFGPQPRDYEFKVNKKVRKLALRMALSSRLAGSN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVR 279
LLV + E+P KTK + + K +++ + L L+ +N +P +
Sbjct: 123 LLVVKGFELPEVKTKLFAKIADTLGLDKALIIAPEE--NTTLALSVRN------IPGITI 174
Query: 280 STTQSFLIY 288
+T + +Y
Sbjct: 175 ATPEQLSVY 183
>gi|349699373|ref|ZP_08901002.1| 50S ribosomal protein L4 [Gluconacetobacter europaeus LMG 18494]
Length = 204
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 102/175 (58%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G L ++F R DI+ RVV WQLAKR+ GTH K + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGKASLPDEIFAATPRTDIMARVVHWQLAKRRAGTHKVKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
D S K+ + + T L+ D + E A +NL +++LP++
Sbjct: 125 L-DAATASGKSAELAKKLKVLGWT-SALIVD-AAVEENFGRAARNLPKIDILPTI 176
>gi|126732273|ref|ZP_01748073.1| 50S ribosomal protein L4 [Sagittula stellata E-37]
gi|126707142|gb|EBA06208.1| 50S ribosomal protein L4 [Sagittula stellata E-37]
Length = 205
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 109/177 (61%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L +F + R DI+HRVVRWQ K Q GTH KT SEVS + KK
Sbjct: 3 LDVINLDGGSAGEVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ + P FR G GP PRSHA +L KKVR LGLK+ALS +A G L
Sbjct: 63 IYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHELPKKVRALGLKMALSDKARNGAL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + ++ S KTK + +++ K+ L+ DG ++E A +N+ ++VLP++
Sbjct: 123 IVIDSIDGAS-KTKALAAQVSKL-GWKRALIIDGAEVNENFAKAARNIEGLDVLPTI 177
>gi|410464304|ref|ZP_11317750.1| 50S ribosomal protein L4, bacterial/organelle [Desulfovibrio
magneticus str. Maddingley MBC34]
gi|409982555|gb|EKO38998.1| 50S ribosomal protein L4, bacterial/organelle [Desulfovibrio
magneticus str. Maddingley MBC34]
Length = 210
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 104 TNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
FN+ + G + LA +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG GKK
Sbjct: 4 VKLFNQGCQEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAYVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG +HGP+PR + K+N+KVR+L L++ALSA+ E +L
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGAVVHGPQPRDYTFKVNRKVRQLALRMALSAKLVEDQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ + + P KTK + + K +++ L+L+ +NL + V+
Sbjct: 124 VLLDAIAFPEVKTKLMAKVVSDFSWKKALIVLPES--DNNLELSARNLPGIKVV 175
>gi|163760800|ref|ZP_02167879.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43]
gi|162281844|gb|EDQ32136.1| 50S ribosomal protein L4 [Hoeflea phototrophica DFL-43]
Length = 206
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT + G + L+ +F + R+D+I R+VRWQLAK+QQG H T SE+S TG K
Sbjct: 3 LTVTTLEGKSAGKISLSDAIFGLEPRQDLIQRIVRWQLAKKQQGGHKTLGRSEISRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH PQFRGG HGP RSHA L KKVR L L+ ALSA+A +
Sbjct: 63 MFKQKGTGRARHHAASAPQFRGGGRAHGPVVRSHAHDLPKKVRALALRHALSAKAQASDI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ + L KTK + ++M L G + + +LA +N+ V+VLP
Sbjct: 123 IIVDSLTAGEAKTKALTGSLDKM-GLNNALFIGGAELDQNFRLAAKNIPNVDVLP 176
>gi|42524374|ref|NP_969754.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100]
gi|46576695|sp|P61061.1|RL4_BDEBA RecName: Full=50S ribosomal protein L4
gi|39576583|emb|CAE80747.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus HD100]
Length = 209
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N+ E G + LA DVF+ P++K+++H VV+WQLA R+QGTH TKT VSG GKK
Sbjct: 4 VNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G+ R GG T GP+PRS+A L KKVRRLGL +ALS EGKL
Sbjct: 64 PFKQKGTGGARQGSSRSILMPGGGTAFGPQPRSYAFVLPKKVRRLGLSMALSHLQKEGKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ + + + N Q KK +L D + +K A++NL P
Sbjct: 124 FIVDSMASEGKTAEL--NKRLQAFGLKKAVLVD-SVVDDKFNRASKNLPTFKYFP 175
>gi|395787644|ref|ZP_10467236.1| 50S ribosomal protein L4 [Bartonella birtlesii LL-WM9]
gi|395410266|gb|EJF76821.1| 50S ribosomal protein L4 [Bartonella birtlesii LL-WM9]
Length = 206
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RV+RWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GGEAGKLKVSKAIFGLVPREDILQRVIRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R QFRGG HGP R HA L KKVR LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARVSQFRGGGKAHGPVARGHAHGLPKKVRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V +++ V KTK +V++++++ LL G + A N+ +++LP
Sbjct: 120 KDLIVVDEMRVQDAKTKVLVSHFSKL-GFDNALLIGGKEVDANFSRAASNIPNIDILP 176
>gi|110180282|gb|ABG54384.1| 23S ribosomal protein L4 [Brucella ceti]
gi|110180286|gb|ABG54386.1| 23S ribosomal protein L4 [Brucella ceti]
Length = 206
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGT RARH + R PQFRGG HGP R+H L KKV LGL+ ALSA+A L
Sbjct: 63 MYKQKGTDRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVLALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
>gi|354593427|ref|ZP_09011470.1| 50S ribosomal protein L4 [Commensalibacter intestini A911]
gi|353672538|gb|EHD14234.1| 50S ribosomal protein L4 [Commensalibacter intestini A911]
Length = 204
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 104/177 (58%), Gaps = 3/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L ++F+V R DI+ RVV WQLAKR+ GTH K EVSGT KK
Sbjct: 3 VEIKTLDNGSVGNITLPAELFEVQPRADIMARVVHWQLAKRRAGTHKVKGRGEVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LRGP FR G +HGP R H L K++RRLGL ALS + +EGKL
Sbjct: 63 PFRQKGTGNARQGSLRGPHFRTGGVVHGPVVRDHGYSLPKQIRRLGLISALSQKLSEGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + + + ++ K L+ D + E A +N+H V++LP++
Sbjct: 123 VVIDQANGVAKTAELAAKL--KVLGWKSALIVD-TAVDENFGHAVRNIHSVDILPTI 176
>gi|338739397|ref|YP_004676359.1| 50S ribosomal protein L4 [Hyphomicrobium sp. MC1]
gi|337759960|emb|CCB65791.1| 50S ribosomal protein L4 [Hyphomicrobium sp. MC1]
Length = 206
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
VT+ G + LA D+F + +R D+IHR+VR+Q KR GTH + SEV+ TGKK +
Sbjct: 5 VTSLDAGKSGDIELADDIFGLEVRNDLIHRMVRYQTLKRMAGTHHAQDRSEVAVTGKKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GPKPRSHAI+L KKVR L L+ ALS++A G+++V
Sbjct: 65 KQKGTGGARHGDKSAPQFRGGGKAFGPKPRSHAIELPKKVRALALRHALSSKAKAGEIVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ KT + + ++ + + L+ DG + A +N+ ++VLP
Sbjct: 125 IDKATSAEGKTTALKAQFAKL-SLENALIIDGAELEVNFTRAARNIPNIDVLP 176
>gi|148260938|ref|YP_001235065.1| 50S ribosomal protein L4 [Acidiphilium cryptum JF-5]
gi|326404336|ref|YP_004284418.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301]
gi|338989186|ref|ZP_08634057.1| RplD [Acidiphilium sp. PM]
gi|166234626|sp|A5FZW4.1|RL4_ACICJ RecName: Full=50S ribosomal protein L4
gi|146402619|gb|ABQ31146.1| LSU ribosomal protein L4P [Acidiphilium cryptum JF-5]
gi|325051198|dbj|BAJ81536.1| 50S ribosomal protein L4 [Acidiphilium multivorum AIU301]
gi|338205873|gb|EGO94138.1| RplD [Acidiphilium sp. PM]
Length = 216
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 103/177 (58%), Gaps = 3/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I ++ G L + F R DI+ RVV WQLAKR+ GTH K + EVSGT KK
Sbjct: 3 IDISTLDAGSAGKAELPEEYFAATPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR G+LR PQFR G +HGP R H LNKKVRRLGL ALS + AEGKL
Sbjct: 63 PYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYSLNKKVRRLGLISALSQKLAEGKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + + S ++ N + + L+ D + E A++NL ++VLP V
Sbjct: 123 VVLDTVAGVSKTSEL--NVKLKKLGWGRTLVVD-AVVDEGFARASRNLIGIDVLPVV 176
>gi|239905859|ref|YP_002952598.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1]
gi|259491554|sp|C4XLX4.1|RL4_DESMR RecName: Full=50S ribosomal protein L4
gi|239795723|dbj|BAH74712.1| 50S ribosomal protein L4 [Desulfovibrio magneticus RS-1]
Length = 210
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 111/174 (63%), Gaps = 5/174 (2%)
Query: 104 TNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
FN+ + G + LA +VF+V ++ +++H VVR QLA ++ GTHS KT + VSG GKK
Sbjct: 4 VKLFNQGCQEIGTVDLAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRAFVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG +HGP+PR + K+N+KVR+L L++ALSA+ E +L
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGAVVHGPQPRDYTFKVNRKVRQLALRMALSAKLVEDQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ + + P KTK + + K +++ L+L+ +NL + V+
Sbjct: 124 VLLDAIAFPEVKTKLMAKVVSDFSWKKALIVLPES--DNNLELSARNLPGIKVV 175
>gi|158424177|ref|YP_001525469.1| 50S ribosomal protein L4 [Azorhizobium caulinodans ORS 571]
gi|158331066|dbj|BAF88551.1| ribosomal protein L4/L1e [Azorhizobium caulinodans ORS 571]
Length = 207
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L+ +F + R DI+HR+V WQLA+RQ GTH TK SE++ T KK
Sbjct: 4 LTVKTLDGAEAGSIQLSDAIFGLEPRADILHRMVTWQLARRQAGTHRTKGRSEINRTSKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP RSHA L KKVR L LK ALS++A ++
Sbjct: 64 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSSKAKAEQI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + + KTK + + ++ VL+ DG + LA +NL V+VLP
Sbjct: 124 IVLDAATLTDAKTKALKERFEKL-GIASVLVVDGEQVATNFALAARNLASVDVLP 177
>gi|337288311|ref|YP_004627783.1| 50S ribosomal protein L4/L1e [Thermodesulfobacterium sp. OPB45]
gi|334902049|gb|AEH22855.1| ribosomal protein L4/L1e [Thermodesulfobacterium geofontis OPF15]
Length = 210
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/165 (47%), Positives = 105/165 (63%), Gaps = 5/165 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D++ V + ++H VVRWQ+A+ + GT TKT EV G G+KPW QK TGRAR
Sbjct: 17 GEIELPSDLYGVTPKVGLLHEVVRWQMARWRAGTACTKTRGEVRGGGRKPWPQKHTGRAR 76
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG +HGPKPRS+ KLNKKVRRLGLK+ALS+RA K+ V ED V
Sbjct: 77 QGSIRAPQWVGGGVVHGPKPRSYEFKLNKKVRRLGLKMALSSRALANKVYVAEDFPVKDK 136
Query: 232 -KTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK + N+ + + N +++ + I EK + NL V VL
Sbjct: 137 PKTKVLKNFLDTLGINDALIVVPERNLILEK---SADNLPKVKVL 178
>gi|383645524|ref|ZP_09957930.1| 50S ribosomal protein L4 [Sphingomonas elodea ATCC 31461]
Length = 208
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 102/177 (57%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +KG + L ++F + R DI+HRVV WQL KR+ T+ S+V+ +GKK
Sbjct: 3 VKVQTLDAAEKGDIELNDEIFGLDPRADILHRVVTWQLEKRRGTARGTRERSDVARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKK+R LGLK+ALS+ A G L
Sbjct: 63 WGRQKGGGTARHGDRRAPVFIGGGKAHGARVRDFNPSLNKKIRALGLKMALSSHAKAGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + L V + KTK + ++ KK L+ DG I LA NLH V+VLP++
Sbjct: 123 IVMDSLVVENGKTKVLAGNLEKLGFGKKALVIDGDTIETTFALAAGNLHQVDVLPAI 179
>gi|406925479|gb|EKD61943.1| hypothetical protein ACD_54C00012G0002 [uncultured bacterium]
Length = 206
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R D++HRVVRWQ A+ Q GTHST T +EVS + KK ++QKGTG ARHG+ + P
Sbjct: 22 LFGLDPRADVLHRVVRWQRARSQAGTHSTLTRAEVSYSTKKIYKQKGTGGARHGSKKAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FR G + GP PRSHA L KK R LGL+ ALSA+A G+L++ + + KT + +
Sbjct: 82 FRHGGVVKGPTPRSHAHDLPKKFRALGLRHALSAKAKAGELVILDTASMAEAKTSVLAKH 141
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ K+VL+ DG + LA +N+ ++VLP++
Sbjct: 142 AQEL-GWKRVLIIDGAAVDANFALAARNIEGIDVLPTM 178
>gi|303246994|ref|ZP_07333270.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ]
gi|302491701|gb|EFL51584.1| ribosomal protein L4/L1e [Desulfovibrio fructosovorans JJ]
Length = 210
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 111/174 (63%), Gaps = 2/174 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + LA +VF+V ++ +++H VVR QLA ++ GTHS KT S VSG GKK
Sbjct: 4 VKVYDQGRQEIGDVELAPEVFEVEVQPELLHLVVRAQLAAKRAGTHSVKTRSTVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG +HGP+PR + K+N+KVR L L++ALSA+ + L
Sbjct: 64 PWRQKGTGRARAGSTRSPIWRGGAIVHGPQPRDYGFKVNRKVRLLALRMALSAKLGDDSL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ + L VP KTK + + K +++ L+L+ +NL + V+
Sbjct: 124 VLVDALSVPEVKTKHMAKVTSDFGLKKALIVLPAS--DNNLELSARNLPGIKVV 175
>gi|169830437|ref|YP_001716419.1| 50S ribosomal protein L4 [Candidatus Desulforudis audaxviator
MP104C]
gi|226730652|sp|B1I1I9.1|RL4_DESAP RecName: Full=50S ribosomal protein L4
gi|169637281|gb|ACA58787.1| ribosomal protein L4/L1e [Candidatus Desulforudis audaxviator
MP104C]
Length = 207
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN + G + L+ VF P+ ++H VV QLA R+QGTH TKT SEV G
Sbjct: 1 MPTAAVFNIEGQQVGEIELSEAVFGQPVNDAVLHEVVVMQLANRRQGTHDTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHGT+R P +RGG + GP PR ++ ++ KKV+RL LK AL+ +
Sbjct: 61 GRKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRDYSYRVPKKVKRLALKSALATKVDA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
G++LV + LE+P KTK + ++ + L+
Sbjct: 121 GRILVLDALELPGPKTKEMARILANLKAGEGALVV 155
>gi|408380611|ref|ZP_11178195.1| 50S ribosomal protein L4 [Agrobacterium albertimagni AOL15]
gi|407745824|gb|EKF57356.1| 50S ribosomal protein L4 [Agrobacterium albertimagni AOL15]
Length = 206
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 105/173 (60%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ ++F + R+D+I R++R+QLAK++ GTH K SEVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSEEIFGLEPREDLIARMIRYQLAKKRAGTHKIKGRSEVSRTGSKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+ +++
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKMKSEDVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK +V + + T L+ G I KLA N+ ++VLP
Sbjct: 125 VDNLVAAEAKTKLLVGSFASLGLT-NALVIGGAEIDSNFKLAASNIPNIDVLP 176
>gi|319404424|emb|CBI78027.1| 50S ribosomal protein L4 [Bartonella rochalimae ATCC BAA-1498]
Length = 206
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + ++ G + ++ ++F + R+DI+ RVVRWQLA+RQ+GTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL++ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHNLPKKVRALGLRLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ ++L + KTK + ++++ LL G + A N+ ++VLP
Sbjct: 120 DNLIIVDELSIRDAKTKMLNMNFSKL-GFNNALLIGGKEVDVNFFRAASNIPNIDVLP 176
>gi|260577180|ref|ZP_05845157.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2]
gi|259020654|gb|EEW23973.1| ribosomal protein L4/L1e [Rhodobacter sp. SW2]
Length = 206
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHST T +EVS + KK ++QKGTG AR
Sbjct: 14 GSITLDEALFGLEPRADILHRVVRWQRAKAQAGTHSTLTRAEVSYSTKKIYKQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G + GP PRSHA L KK R LGL+ ALSA+A G+L++ + +
Sbjct: 74 HGSKKAPIFRHGGVVKGPTPRSHAHDLPKKFRALGLRHALSAKAQAGELIILDVATMADA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
K+ + ++ K+VL+ DG + LA +N+ ++VLPS+
Sbjct: 134 KSSILAKAAKEL-GWKRVLIIDGAEVDANFALAARNIEGIDVLPSM 178
>gi|357039748|ref|ZP_09101540.1| ribosomal protein L4/L1e [Desulfotomaculum gibsoniae DSM 7213]
gi|355357554|gb|EHG05327.1| ribosomal protein L4/L1e [Desulfotomaculum gibsoniae DSM 7213]
Length = 207
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 101/152 (66%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L D+F + + + +H VV QLA R+QGTH TKT +EVSG G+K
Sbjct: 4 VAMYNINGDQVGEIDLKEDIFGIAVHQQALHDVVTMQLAGRRQGTHDTKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRARHG++R P +RGG + GP PRS++ ++ KKVRRL +K ALS++ G +
Sbjct: 64 PYRQKGTGRARHGSIRSPIWRGGGIVFGPHPRSYSYRVPKKVRRLAMKSALSSKVEGGTI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V E+L++ KTK +V N ++ K L+
Sbjct: 124 VVLEELKMDVPKTKDMVKILNNLKVDNKALVV 155
>gi|94987403|ref|YP_595336.1| 50S ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00]
gi|442556248|ref|YP_007366073.1| 50S ribosomal protein L4 [Lawsonia intracellularis N343]
gi|166234679|sp|Q1MPR2.1|RL4_LAWIP RecName: Full=50S ribosomal protein L4
gi|94731652|emb|CAJ55015.1| ribosomal protein L4 [Lawsonia intracellularis PHE/MN1-00]
gi|441493695|gb|AGC50389.1| 50S ribosomal protein L4 [Lawsonia intracellularis N343]
Length = 206
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 96/142 (67%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
++ V N E+ G + L+ +F+V ++ +I+H VVR QLA ++ GTHS KT VSG G
Sbjct: 3 IVTVYNQQKEETGKINLSSKIFEVQVQPEILHLVVRAQLAAKRAGTHSVKTRGHVSGGGA 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G+ R P +RGG + GP+PR ++ K+NKK+R L L +ALS+R AE
Sbjct: 63 KPWRQKGTGRARAGSNRSPLWRGGGIVFGPQPRDYSFKVNKKIRSLALCMALSSRFAEEN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYN 241
L+V +++ +P KTK V N
Sbjct: 123 LIVIDNIVLPEIKTKHFVGVAN 144
>gi|325294397|ref|YP_004280911.1| 50S ribosomal protein L4 [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325064845|gb|ADY72852.1| ribosomal protein L4/L1e [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 208
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 2/156 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V N N++ G + + ++ + PI+K + V+WQLAKR++GTHSTKT EV G G
Sbjct: 1 MEIKVVNAANQEVGTVTIKDEIANAPIKKHAVWETVKWQLAKRRRGTHSTKTRGEVRGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKPW QK TGRAR G++R PQ+ GG +HGPKPR + L KKVR++ L+ ++ R EG
Sbjct: 61 KKPWPQKHTGRARQGSIRAPQWVGGGVVHGPKPRDYYYPLPKKVRKVALRSVVAGRLQEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLC 252
L+V ED KTK + + +EN K +++
Sbjct: 121 NLIVVEDFTFEKPKTKQAIEFLRNLGLENEKVLIVV 156
>gi|395493809|ref|ZP_10425388.1| 50S ribosomal protein L4 [Sphingomonas sp. PAMC 26617]
gi|404254135|ref|ZP_10958103.1| 50S ribosomal protein L4 [Sphingomonas sp. PAMC 26621]
Length = 208
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 97/162 (59%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L +VF + R DI+HRVV WQL KR+ T+ S+V+ TGKK RQKG G ARHG
Sbjct: 18 LNDEVFGLDPRADILHRVVTWQLEKRRATASGTRERSDVARTGKKFGRQKGGGTARHGDR 77
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P F GG HG + R LNKKVR LGLK+ALS+ A G L+V + L V ++KTK
Sbjct: 78 RAPIFVGGGKAHGQRTRDFNPGLNKKVRALGLKMALSSHAQAGTLVVMDSLAVEANKTKT 137
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ ++ + K L+ DG + LA NLH +NV+P+
Sbjct: 138 LIGSWSNIGAGKTALVIDGDMVDTSFALAAGNLHTINVMPAA 179
>gi|258513641|ref|YP_003189863.1| 50S ribosomal protein L4 [Desulfotomaculum acetoxidans DSM 771]
gi|257777346|gb|ACV61240.1| ribosomal protein L4/L1e [Desulfotomaculum acetoxidans DSM 771]
Length = 206
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 96/155 (61%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN E G + L +VF + + + ++H V QLA R+QGTH TKT EV G
Sbjct: 1 MPTVALFNIKGEQVGEVALKDEVFGIEVNESVLHDAVVMQLAGRRQGTHDTKTRGEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHGT+R P +RGG + GP PR++ KL KKVRRL LK ALS++
Sbjct: 61 GKKPWRQKGTGRARHGTIRSPIWRGGGIVFGPHPRTYKYKLPKKVRRLALKSALSSKVLA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
G + V + L + KTK +V ++ K +L+
Sbjct: 121 GNIKVLDALSMEMPKTKEMVGILKNLQVDKALLVI 155
>gi|132978|sp|P28601.1|RL4_BACST RecName: Full=50S ribosomal protein L4; Short=BL4
gi|40103|emb|CAA47403.1| ribosomal protein L4 [Geobacillus stearothermophilus]
Length = 207
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 111/179 (62%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V + L + + KTK +V N + +K L+ ++E + L+ +N+ V V+P+
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVT-DELNENVYLSARNIPGVKVVPA 178
>gi|357977005|ref|ZP_09140976.1| 50S ribosomal protein L4 [Sphingomonas sp. KC8]
Length = 208
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 104/177 (58%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + LA +VF + R DI+HRVV WQL KR+ T+ S+V+ +GKK
Sbjct: 3 VKVQTLDAKASGDIELADEVFGLDPRADILHRVVTWQLEKRRGTARGTRERSDVARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGLK+ALSA+A +G L
Sbjct: 63 FGRQKGGGTARHGDRRAPVFIGGGKAHGARVRDFNPSLNKKVRTLGLKMALSAKAKDGNL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ + L+V KTK + ++ K L+ DG ++ LA+ NL VN+LP++
Sbjct: 123 IIVDALDVAEGKTKVLATQLEKLGFGAKALVIDGDALNVSFALASGNLKGVNLLPAI 179
>gi|349685845|ref|ZP_08896987.1| 50S ribosomal protein L4 [Gluconacetobacter oboediens 174Bp2]
Length = 204
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 101/175 (57%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G L ++F R DI+ RVV WQLAKR+ G H K + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGKTSLPDEIFAATPRTDIMARVVHWQLAKRRAGKHKVKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRSPQYRTGGVVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
D S K+ + + T L+ D + E A +NL +++LP++
Sbjct: 125 L-DAATASGKSAELAKKLKVLGWT-SALIVD-AAVEENFGRAARNLPKIDILPTI 176
>gi|317050529|ref|YP_004111645.1| 50S ribosomal protein L4/L1e [Desulfurispirillum indicum S5]
gi|316945613|gb|ADU65089.1| ribosomal protein L4/L1e [Desulfurispirillum indicum S5]
Length = 207
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N NE G + L+ ++F ++ ++H VV QLA R+QGTH+ K S VSG G
Sbjct: 3 VVSVINVNNEKVGEVALSDELFGGAVKPHLMHEVVVAQLAARRQGTHAVKNRSAVSGGGS 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR GT R P +R G + GP PRS+ K+NKKVRR L ALS +AA+
Sbjct: 63 KPWRQKGTGRARAGTSRSPLWRTGGVIFGPTPRSYEKKVNKKVRRQALVSALSEKAAQQS 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++VF+D + S KTK + + +KVL K LA +NL +V ++
Sbjct: 123 IVVFDDFALESPKTKLANQVFAKCSLDRKVLFVVDEMDSPK-ALAMRNLPFVKLI 176
>gi|302344355|ref|YP_003808884.1| 50S ribosomal protein L4 [Desulfarculus baarsii DSM 2075]
gi|301640968|gb|ADK86290.1| ribosomal protein L4/L1e [Desulfarculus baarsii DSM 2075]
Length = 206
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 107/177 (60%), Gaps = 5/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + ++E K G + LA +VF ++ ++H VV WQLAKR+ GT TKT SEV G
Sbjct: 1 MPKVDVYDEKKQKVGEIELADEVFAAEVKAHLLHEVVVWQLAKRRAGTACTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G+ R P +RGG T HGPKPR + + KKVR+ LK ALS + AE
Sbjct: 61 GRKPWRQKGTGRARVGSRRSPLWRGGGTTHGPKPRDYDYNVPKKVRKAALKSALSDKLAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KL+V + + KTK + T+ VL+ G E L+ + +N+ V VL
Sbjct: 121 EKLMVLRGFGLEAIKTKAFAEVLATFQ-TQNVLVVTAGP-DEVLEKSARNIPMVKVL 175
>gi|310817007|ref|YP_003964971.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25]
gi|385234595|ref|YP_005795937.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare WSH-001]
gi|308755742|gb|ADO43671.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare Y25]
gi|343463506|gb|AEM41941.1| 50S ribosomal protein L4 [Ketogulonicigenium vulgare WSH-001]
Length = 206
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I N G + L +F + R DI+HR+VRWQ A+ QQGTH SEVS + KK
Sbjct: 3 IDAINLDGGAAGSVELNDAIFALEPRADILHRLVRWQRARAQQGTHKVLGKSEVSYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ + P FR G GP PRSH L KK R LGLK ALSA+A G+L
Sbjct: 63 IYRQKGTGGARHGSKKAPIFRHGGVYKGPTPRSHEHDLTKKFRALGLKHALSAKAKAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V E V KT + + + K+ L+ DG + E A +N+ +++LPS+
Sbjct: 123 VVIEAATVAEAKTALLAKQLSNL-GWKRALVIDGAAVDEGFARAARNIANLDILPSM 178
>gi|452853998|ref|YP_007495682.1| 50S ribosomal protein L4 [Desulfovibrio piezophilus]
gi|451897652|emb|CCH50531.1| 50S ribosomal protein L4 [Desulfovibrio piezophilus]
Length = 206
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 114/176 (64%), Gaps = 2/176 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + N G + L+ +VF+V I+ +I++ VVR Q A ++QGTH+TK + +G G+K
Sbjct: 4 IQVVDQNNTKVGDIELSPEVFEVEIQPEILNMVVRAQRAAKRQGTHATKNRALKTGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG T GP+PR ++ K+NKKVR+L L++ALS+R +E KL
Sbjct: 64 PWRQKGTGRARAGSSRSPLWRGGATTFGPQPRDYSFKVNKKVRKLALQMALSSRVSEAKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
V +++ KTK +++ K +++ EKL ++ +N+ ++ V+ +
Sbjct: 124 TVVNTIDLTEIKTKAFAAVADKLGLGKTLIVAKDA--DEKLIMSARNMPHIKVIEA 177
>gi|182678338|ref|YP_001832484.1| 50S ribosomal protein L4 [Beijerinckia indica subsp. indica ATCC
9039]
gi|226730620|sp|B2IK63.1|RL4_BEII9 RecName: Full=50S ribosomal protein L4
gi|182634221|gb|ACB94995.1| ribosomal protein L4/L1e [Beijerinckia indica subsp. indica ATCC
9039]
Length = 206
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I +T+ E G + L +F + R D+I R++R+QLAKR+ GTH + +++ TG
Sbjct: 1 MKIDITSVNGETAGSIDLDDAIFGLEPRVDLIARMIRYQLAKRRAGTHQSLGRADIHRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSH L KK+R L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGSARHGSARAPQFRGGGKAFGPVARSHEHDLPKKIRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++++ D ++P KTK + + ++ T L+ DG + LA +N+ ++VLP
Sbjct: 121 GIIIWNDAKIPEAKTKGLKANFEKIGLT-NALIIDGAELETNFSLAARNIPQIDVLP 176
>gi|319408764|emb|CBI82421.1| 50S ribosomal protein L4 [Bartonella schoenbuchensis R1]
Length = 206
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RVVRWQLA+RQQGTH ++ S+V+ T
Sbjct: 2 DLVIKTLD--GNEAGKLKVSEHIFGLAPREDILQRVVRWQLARRQQGTHQSQGRSDVART 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSH L KK R LGL +ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVARSHVHILPKKSRALGLCLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++L V KTK + ++++ LL G I+ A N+ ++VLP
Sbjct: 120 NDLIVVDELNVQDAKTKVLAKSFSKL-GFNNALLIGGKEINMNFSRAASNIPNIDVLP 176
>gi|423480255|ref|ZP_17456945.1| 50S ribosomal protein L4 [Bacillus cereus BAG6X1-2]
gi|401149260|gb|EJQ56735.1| 50S ribosomal protein L4 [Bacillus cereus BAG6X1-2]
Length = 207
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+
Sbjct: 124 VVLEDLVLNAPKTKDMVTVLKGLTVEKKALIVTADA-NESVELSARNIPGVTVI 176
>gi|319407425|emb|CBI81076.1| 50S ribosomal protein L4 [Bartonella sp. 1-1C]
Length = 206
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + ++ G + ++ ++F + R+DI+ RVVRWQLA+RQ+GTH ++ S+VS T
Sbjct: 2 DLIIKTLD--GKEAGKLKVSENIFGLTPREDILQRVVRWQLARRQKGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHNLPKKIRALGLRLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L++ ++L + KTK + ++++ LL G + A N+ ++VLP
Sbjct: 120 DNLIIVDELSIRDAKTKVLNMNFSKL-GFNNALLIGGKEVDMNFFRAASNIPNIDVLP 176
>gi|149915845|ref|ZP_01904369.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b]
gi|149810168|gb|EDM70014.1| 50S ribosomal protein L4 [Roseobacter sp. AzwK-3b]
Length = 205
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ K QQGTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVDLGEDIFGLDPRADILHRVVRWQRNKAQQGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSHA L KKVR LGLK ALSA+A G+L+V D
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKAKAGELVVL-DAATSDG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+VL+ DG ++ A N+ V+VLPS+
Sbjct: 133 KTGALAKQIKDL-GWKRVLIIDGAEVNADFARAAANIEGVDVLPSM 177
>gi|426404881|ref|YP_007023852.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus str. Tiberius]
gi|425861549|gb|AFY02585.1| 50S ribosomal protein L4 [Bdellovibrio bacteriovorus str. Tiberius]
Length = 209
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N+ E G + LA DVF+ P++K+++H VV+WQLA R+QGTH TKT VSG GKK
Sbjct: 4 VNVLNWKKEKVGSVELAADVFETPVKKEVLHTVVQWQLAARRQGTHMTKTKGLVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G+ R GG T GP+PRS+A L KKVRRLGL +ALS EGKL
Sbjct: 64 PFKQKGTGGARQGSSRSILMPGGGTAFGPQPRSYAFVLPKKVRRLGLSMALSHLQKEGKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ + + S +N KK +L D + +K A++NL P
Sbjct: 124 FIVDSM--ASEGKTAELNKRLAAFGLKKAVLVD-SVVDDKFNRASKNLPTFKYFP 175
>gi|168187813|ref|ZP_02622448.1| ribosomal protein L4/L1 family [Clostridium botulinum C str.
Eklund]
gi|169294356|gb|EDS76489.1| ribosomal protein L4/L1 family [Clostridium botulinum C str.
Eklund]
Length = 206
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 111/178 (62%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N + G + LA VF V + +D++H+VV QLA ++QG S KT +EVSG
Sbjct: 1 MPTVDLYNREGQKVGDLQLADTVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ E
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L+V E LE+ + KTK +V N E+ K +++ +E + + +N+ V+P
Sbjct: 121 KELVVLESLELDAPKTKEMVKMINAFESKKPLIVVPES--NEVIYKSVRNIEGATVVP 176
>gi|402821888|ref|ZP_10871404.1| 50S ribosomal protein L4 [Sphingomonas sp. LH128]
gi|402264611|gb|EJU14458.1| 50S ribosomal protein L4 [Sphingomonas sp. LH128]
Length = 208
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ DVF + R DI+HRVV WQL R+ +T+ SEV+ TGKK QKG G AR
Sbjct: 15 GDIELSDDVFGLEPRADILHRVVTWQLENRRGIARATRERSEVARTGKKFGNQKGGGTAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P F GG HG + R I LNKK+R LGLK+ALSA+A G L++ + L+V
Sbjct: 75 HGDRAAPVFIGGGKAHGARRREFNISLNKKIRALGLKMALSAKAQNG-LVIVDSLDVADA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK + + KKVL+ DG ++E LA +N+ VNVLP+V
Sbjct: 134 KTKALAGQLAKANFGKKVLVMDGDQVNEGFALAARNIVGVNVLPAV 179
>gi|152973957|ref|YP_001373474.1| 50S ribosomal protein L4 [Bacillus cytotoxicus NVH 391-98]
gi|189029490|sp|A7GK21.1|RL4_BACCN RecName: Full=50S ribosomal protein L4
gi|152022709|gb|ABS20479.1| ribosomal protein L4/L1e [Bacillus cytotoxicus NVH 391-98]
Length = 207
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 106/174 (60%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH K SEVSG G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVVMQRASLRQGTHKVKNRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V EDL + + KTK +V + KK L+ ++E ++L+ +N+ V V+
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLAVEKKALIVTAD-VNEAVELSARNIPGVTVI 176
>gi|334345466|ref|YP_004554018.1| 50S ribosomal protein L4 [Sphingobium chlorophenolicum L-1]
gi|334102088|gb|AEG49512.1| ribosomal protein L4/L1e [Sphingobium chlorophenolicum L-1]
Length = 207
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V R DI+HRVV WQL KR+ T +T+ S+V+ TGKK
Sbjct: 3 VNVQTLDAQAAGDLELNDAVFGVEPRTDILHRVVLWQLEKRRAPTRATRERSDVARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG + P F GG HG + R+ LNKKVR LGLK+ALS +A G L
Sbjct: 63 FGRQKGGGTARHGDRKAPVFIGGGKAHGARARTFGHDLNKKVRALGLKMALSTKAKNGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V ++L+V KTK +V + ++ N K L DG ++ A+ N+ VN+LP+V
Sbjct: 123 IVLDNLDVAEGKTKALVAHLAKL-NLNKALFIDGDAVNVSFAKASANIVGVNLLPAV 178
>gi|163938119|ref|YP_001643003.1| 50S ribosomal protein L4 [Bacillus weihenstephanensis KBAB4]
gi|229009620|ref|ZP_04166846.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048]
gi|229015513|ref|ZP_04172511.1| 50S ribosomal protein L4 [Bacillus cereus AH1273]
gi|229021722|ref|ZP_04178304.1| 50S ribosomal protein L4 [Bacillus cereus AH1272]
gi|229053957|ref|ZP_04195391.1| 50S ribosomal protein L4 [Bacillus cereus AH603]
gi|229131119|ref|ZP_04260031.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196]
gi|229165099|ref|ZP_04292894.1| 50S ribosomal protein L4 [Bacillus cereus AH621]
gi|423370693|ref|ZP_17348098.1| 50S ribosomal protein L4 [Bacillus cereus VD142]
gi|423393436|ref|ZP_17370662.1| 50S ribosomal protein L4 [Bacillus cereus BAG1X1-3]
gi|423421723|ref|ZP_17398812.1| 50S ribosomal protein L4 [Bacillus cereus BAG3X2-1]
gi|423456268|ref|ZP_17433121.1| 50S ribosomal protein L4 [Bacillus cereus BAG5X1-1]
gi|423473136|ref|ZP_17449878.1| 50S ribosomal protein L4 [Bacillus cereus BAG6O-2]
gi|423485410|ref|ZP_17462092.1| 50S ribosomal protein L4 [Bacillus cereus BtB2-4]
gi|423491135|ref|ZP_17467779.1| 50S ribosomal protein L4 [Bacillus cereus CER057]
gi|423502069|ref|ZP_17478686.1| 50S ribosomal protein L4 [Bacillus cereus CER074]
gi|423514625|ref|ZP_17491132.1| 50S ribosomal protein L4 [Bacillus cereus HuA2-1]
gi|423514963|ref|ZP_17491444.1| 50S ribosomal protein L4 [Bacillus cereus HuA2-4]
gi|423526387|ref|ZP_17502836.1| 50S ribosomal protein L4 [Bacillus cereus HuA4-10]
gi|423556893|ref|ZP_17533196.1| 50S ribosomal protein L4 [Bacillus cereus MC67]
gi|423597000|ref|ZP_17573010.1| 50S ribosomal protein L4 [Bacillus cereus VD048]
gi|423602360|ref|ZP_17578360.1| 50S ribosomal protein L4 [Bacillus cereus VD078]
gi|423614599|ref|ZP_17590456.1| 50S ribosomal protein L4 [Bacillus cereus VD107]
gi|423665376|ref|ZP_17640515.1| 50S ribosomal protein L4 [Bacillus cereus VDM022]
gi|423671560|ref|ZP_17646564.1| 50S ribosomal protein L4 [Bacillus cereus VDM034]
gi|423672636|ref|ZP_17647575.1| 50S ribosomal protein L4 [Bacillus cereus VDM062]
gi|226730619|sp|A9VP78.1|RL4_BACWK RecName: Full=50S ribosomal protein L4
gi|163860316|gb|ABY41375.1| ribosomal protein L4/L1e [Bacillus weihenstephanensis KBAB4]
gi|228618362|gb|EEK75392.1| 50S ribosomal protein L4 [Bacillus cereus AH621]
gi|228652332|gb|EEL08257.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST196]
gi|228721375|gb|EEL72896.1| 50S ribosomal protein L4 [Bacillus cereus AH603]
gi|228739590|gb|EEL90004.1| 50S ribosomal protein L4 [Bacillus cereus AH1272]
gi|228745800|gb|EEL95804.1| 50S ribosomal protein L4 [Bacillus cereus AH1273]
gi|228751642|gb|EEM01442.1| 50S ribosomal protein L4 [Bacillus mycoides DSM 2048]
gi|401073429|gb|EJP81851.1| 50S ribosomal protein L4 [Bacillus cereus VD142]
gi|401096842|gb|EJQ04879.1| 50S ribosomal protein L4 [Bacillus cereus BAG3X2-1]
gi|401130867|gb|EJQ38522.1| 50S ribosomal protein L4 [Bacillus cereus BAG5X1-1]
gi|401151463|gb|EJQ58914.1| 50S ribosomal protein L4 [Bacillus cereus CER074]
gi|401162060|gb|EJQ69419.1| 50S ribosomal protein L4 [Bacillus cereus CER057]
gi|401163437|gb|EJQ70783.1| 50S ribosomal protein L4 [Bacillus cereus HuA4-10]
gi|401168464|gb|EJQ75727.1| 50S ribosomal protein L4 [Bacillus cereus HuA2-4]
gi|401194208|gb|EJR01200.1| 50S ribosomal protein L4 [Bacillus cereus MC67]
gi|401218177|gb|EJR24861.1| 50S ribosomal protein L4 [Bacillus cereus VD048]
gi|401225899|gb|EJR32443.1| 50S ribosomal protein L4 [Bacillus cereus VD078]
gi|401237443|gb|EJR43895.1| 50S ribosomal protein L4 [Bacillus cereus VD107]
gi|401290283|gb|EJR95978.1| 50S ribosomal protein L4 [Bacillus cereus VDM022]
gi|401291949|gb|EJR97614.1| 50S ribosomal protein L4 [Bacillus cereus VDM034]
gi|401311496|gb|EJS16791.1| 50S ribosomal protein L4 [Bacillus cereus VDM062]
gi|401629543|gb|EJS47356.1| 50S ribosomal protein L4 [Bacillus cereus BAG1X1-3]
gi|402426634|gb|EJV58755.1| 50S ribosomal protein L4 [Bacillus cereus BAG6O-2]
gi|402441601|gb|EJV73551.1| 50S ribosomal protein L4 [Bacillus cereus BtB2-4]
gi|402442025|gb|EJV73969.1| 50S ribosomal protein L4 [Bacillus cereus HuA2-1]
Length = 207
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADA-NESVELSARNIPGVTVI 176
>gi|172056141|ref|YP_001812601.1| 50S ribosomal protein L4 [Exiguobacterium sibiricum 255-15]
gi|407475994|ref|YP_006789871.1| 50S ribosomal protein L4 [Exiguobacterium antarcticum B7]
gi|226730665|sp|B1YGV1.1|RL4_EXIS2 RecName: Full=50S ribosomal protein L4
gi|171988662|gb|ACB59584.1| ribosomal protein L4/L1e [Exiguobacterium sibiricum 255-15]
gi|407060073|gb|AFS69263.1| 50S ribosomal protein L4 [Exiguobacterium antarcticum B7]
Length = 207
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 106/163 (65%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA VF + + +++ + Q A R+QGTH TK SEV G G+KPW+QKGTGRAR
Sbjct: 15 GDIELADAVFGIEPNEAVVYDAIVMQQASRRQGTHDTKGRSEVRGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG T+ GP PRS+A KL KKVRRL L+ ALS++ A + +V E L + +
Sbjct: 75 QGSIRSPQWVGGGTVFGPTPRSYAYKLPKKVRRLALRSALSSKVANNEFIVLEGLTIDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK +++ + + +KVL+ +E + L+T+N+ V V+
Sbjct: 135 KTKDMISVFAALSIERKVLVVTADY-NETVVLSTRNIPGVTVV 176
>gi|423399384|ref|ZP_17376582.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-1]
gi|423409840|ref|ZP_17386989.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-3]
gi|401644484|gb|EJS62174.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-1]
gi|401652380|gb|EJS69937.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-3]
Length = 207
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADA-NESVELSARNIPGVTVI 176
>gi|228989320|ref|ZP_04149311.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442]
gi|228995502|ref|ZP_04155170.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17]
gi|229003127|ref|ZP_04160973.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4]
gi|228758090|gb|EEM07289.1| 50S ribosomal protein L4 [Bacillus mycoides Rock1-4]
gi|228764231|gb|EEM13110.1| 50S ribosomal protein L4 [Bacillus mycoides Rock3-17]
gi|228770398|gb|EEM18971.1| 50S ribosomal protein L4 [Bacillus pseudomycoides DSM 12442]
Length = 207
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLTVEKKALIVTADA-NEAVELSARNIPGVTVI 176
>gi|229083431|ref|ZP_04215779.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44]
gi|228699864|gb|EEL52501.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-44]
Length = 207
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V EDL + + KTK +V + KK L+ +E ++L+ +N+ V V+
Sbjct: 124 VVLEDLVLNAPKTKDMVAVLKGLPVEKKALIVTADA-NESVELSARNIPGVTVI 176
>gi|239825694|ref|YP_002948318.1| 50S ribosomal protein L4 [Geobacillus sp. WCH70]
gi|259491561|sp|C5D3R8.1|RL4_GEOSW RecName: Full=50S ribosomal protein L4
gi|239805987|gb|ACS23052.1| ribosomal protein L4/L1e [Geobacillus sp. WCH70]
Length = 207
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 108/174 (62%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L VF + K ++ V Q A +QGTH TK +EVSG G+K
Sbjct: 4 VALYNQSGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E +
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V ++L + + KTK +V N + +K L+ ++E + L+ +N+ V V+
Sbjct: 124 VVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTDD-VNENVTLSARNIPGVTVV 176
>gi|399060854|ref|ZP_10745808.1| 50S ribosomal protein L4, bacterial/organelle [Novosphingobium sp.
AP12]
gi|398036990|gb|EJL30195.1| 50S ribosomal protein L4, bacterial/organelle [Novosphingobium sp.
AP12]
Length = 208
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/162 (46%), Positives = 99/162 (61%), Gaps = 1/162 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ DVF + R DI+HRVV WQL R+ +T+ SEV+ TGKK RQKG G ARHG
Sbjct: 19 LSDDVFGIEPRADILHRVVTWQLENRRGTARATRERSEVARTGKKFGRQKGGGTARHGDR 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
P F GG HG + R LNKK+R LGLK+ALSA+A G L++ + L+V KTK
Sbjct: 79 AAPVFIGGGKAHGARRRDFNPSLNKKIRALGLKMALSAKALNG-LVIVDSLDVADAKTKV 137
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ + KKVL+ DG ++E LA +N+ VNVLP+V
Sbjct: 138 LAGELAKANFGKKVLVMDGEQVNEGFALAARNIIGVNVLPAV 179
>gi|331268414|ref|YP_004394906.1| 50S ribosomal protein L4 [Clostridium botulinum BKT015925]
gi|329124964|gb|AEB74909.1| ribosomal protein L4/L1e [Clostridium botulinum BKT015925]
Length = 206
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 111/178 (62%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N + G + LA VF V + D++H+VV QLA ++QGT S KT +EVSG
Sbjct: 1 MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ E
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPREYRMAIPKSMRRVAMKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L+V E+LE+ + KTK +V N E K +++ +E + + +N+ ++P
Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFEAKKPLIVVAES--NEVVYKSIRNIEGATIVP 176
>gi|298291439|ref|YP_003693378.1| 50S ribosomal protein L4 [Starkeya novella DSM 506]
gi|296927950|gb|ADH88759.1| ribosomal protein L4/L1e [Starkeya novella DSM 506]
Length = 206
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 105/175 (60%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V D G + L+ ++F + R+DI+HR+V WQLA+RQ GTH T + SEV+ T +K
Sbjct: 3 LAVKKLDGTDAGSVTLSDEIFGLEPRQDILHRMVVWQLARRQAGTHQTLSRSEVNRTKRK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG P SHAI L KKVR L LK ALS++A + ++
Sbjct: 63 MYKQKGTGGARHGAASAPQFRGGAKAFAPVQHSHAIDLPKKVRALALKHALSSKAKDQQI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +D + KTK + + VL+ G + LA++N+ +++VLP
Sbjct: 123 VVLDDATLAEPKTKLLKERLAGL-GLSNVLVVSGAEVDANFGLASRNVGHLDVLP 176
>gi|348533363|ref|XP_003454175.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Oreochromis niloticus]
Length = 302
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 30/245 (12%)
Query: 59 SRKFSTTILTPDSSEGAFPSDLLLKKTVLTPD------------ITIGLHQDLVIP---- 102
+++F++++ S+E A P +LLL ++ PD + + D +P
Sbjct: 14 AKRFASSL----SNESALPPNLLLPTNLVDPDRLKRPPPPADSSLPLLRKCDAAVPAHLT 69
Query: 103 -----VTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
V + +D G L DVF VP R DI+H V WQ ++ TK SEV
Sbjct: 70 PVQTWVESLERQDSEPLGVAQLHPDVFAVPPRLDILHSVETWQRNYKRISHAHTKVRSEV 129
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSA 213
SG G+KPW+QKG+GRARHG++R P +RGG HGP+ P S+ L KVR GLK+ALS+
Sbjct: 130 SGGGRKPWKQKGSGRARHGSIRSPIWRGGGVSHGPRGPTSYYYMLPMKVRVQGLKVALSS 189
Query: 214 RAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVN 272
+ A+ L + + L +P+ ++++++ + VL+ D G E + AT NL VN
Sbjct: 190 KKAQDDLHIVDSLNIPTPDSQYLLDLIRHRHWGESVLIVDVGEDFSENILQATANLKTVN 249
Query: 273 VLPSV 277
++P++
Sbjct: 250 IIPAI 254
>gi|118444236|ref|YP_877199.1| 50S ribosomal protein L4 [Clostridium novyi NT]
gi|166234658|sp|A0PXU7.1|RL4_CLONN RecName: Full=50S ribosomal protein L4
gi|118134692|gb|ABK61736.1| ribosomal protein L4/L1 family [Clostridium novyi NT]
Length = 206
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 110/178 (61%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N + G + LA VF V + +D++H+VV QLA ++QG S KT +EVSG
Sbjct: 1 MPTVDLYNIEGQKVGDLQLAETVFAVEVNEDVLHQVVVAQLANKRQGNQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ E
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYKMSIPKSMRRVAMKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L+V E LE+ + KTK +V N E K +++ +E + + +N+ V+P
Sbjct: 121 NELVVLESLELDAPKTKEMVKMINAFEGKKPLIVVPES--NEVIYKSVRNIEGATVVP 176
>gi|291521897|emb|CBK80190.1| LSU ribosomal protein L4P [Coprococcus catus GD/7]
Length = 206
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 112/195 (57%), Gaps = 9/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF V + ++++H+ V QLA +QGT S KT SEVSG G+K
Sbjct: 4 LSVYNIEGNQVGEIELNDAVFGVEVNENLMHKAVVAQLAASRQGTQSAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + PKPR ++IKLNKK RRL +K AL+ + E KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSIKLNKKERRLAIKSALTTKVNESKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V + E+ KTK V N ++ K +++ ++EK + N +P+V +
Sbjct: 124 IVLDSFELDEIKTKKFVAVMNNLKAEKALVV-----LNEK---NDNVIKSANNVPTVKTA 175
Query: 281 TTQSFLIYYYFLDFD 295
T + + Y L +D
Sbjct: 176 LTNTINV-YDILKYD 189
>gi|330795906|ref|XP_003286011.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum]
gi|325084009|gb|EGC37447.1| hypothetical protein DICPUDRAFT_149944 [Dictyostelium purpureum]
Length = 258
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 113/182 (62%), Gaps = 4/182 (2%)
Query: 95 LHQDLVIPVTNFFNEDK-GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISE 153
L +++ P+ +F ++ G + L+ D+F P+R D++HR+VR+Q AK QQGTH +
Sbjct: 42 LKEEIEFPIIDFDSKSNVGTIQLSKDIFSRPLRIDLLHRMVRYQRAKSQQGTHQALNMER 101
Query: 154 VSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSA 213
+ + KKP++QKGTGRAR GT Q +GG P RSHA L KKVR+L LK+ALS+
Sbjct: 102 KTSSNKKPFKQKGTGRARQGTNHAVQMKGGARAFPPTSRSHAHDLPKKVRQLCLKVALSS 161
Query: 214 RAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
+ A+ KL++ ++ ++ SHKTK +V+ Q + LL D I E L ++ N+ ++
Sbjct: 162 KLAQNKLIIIDEFKLSSHKTKDLVSKLPQ--EWGRSLLVDKD-ISENLNRSSLNVQKIDT 218
Query: 274 LP 275
LP
Sbjct: 219 LP 220
>gi|28212174|ref|NP_783118.1| 50S ribosomal protein L4 [Clostridium tetani E88]
gi|46577246|sp|Q890P0.1|RL4_CLOTE RecName: Full=50S ribosomal protein L4
gi|28204618|gb|AAO37055.1| LSU ribosomal protein L1E(= L4P) [Clostridium tetani E88]
Length = 206
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 111/178 (62%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G L+ VF V + K+++H+V+ QLA ++QGT S+KT +EVSG
Sbjct: 1 MPTVGLFNKEGQKVGDFQLSDKVFGVEVNKEVLHQVIVAQLANKRQGTQSSKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ G + PKPR +++ + K ++R+ +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSMAIPKSMKRVAMKSALSSKVQE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++++ E LE + KTK IV N KK L+ ++ + + +N+ V VLP
Sbjct: 121 NEIVILESLEADAPKTKEIVKMLAAF-NAKKTLIVTEES-NKNIYKSARNIEGVTVLP 176
>gi|288574663|ref|ZP_06393020.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570404|gb|EFC91961.1| ribosomal protein L4/L1e [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 206
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + E G + L+G+VFDVP+ +H+VV QLA R+QGTH TK +V G GKK
Sbjct: 4 IKLVTITGESTGELSLSGNVFDVPLHVPAMHQVVVAQLANRRQGTHCTKGRGDVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQK TGRARHG+ R P + GG HGPKPR++ K+NKKVRRL + ALS + + +L
Sbjct: 64 PWRQKHTGRARHGSSRSPIWVGGGVTHGPKPRNYRQKVNKKVRRLAICSALSQKIRDAQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+ FE + TK + + + K +++ D E + ++T+N+ +VL
Sbjct: 124 MGFEAFSMEKPSTKIMKGLFQSLGVEKPLVIVD--HRDENISMSTRNIPGADVL 175
>gi|312109262|ref|YP_003987578.1| 50S ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1]
gi|336233656|ref|YP_004586272.1| 50S ribosomal protein L4 [Geobacillus thermoglucosidasius C56-YS93]
gi|423718377|ref|ZP_17692559.1| 50S ribosomal protein L4/L1e [Geobacillus thermoglucosidans
TNO-09.020]
gi|311214363|gb|ADP72967.1| ribosomal protein L4/L1e [Geobacillus sp. Y4.1MC1]
gi|335360511|gb|AEH46191.1| ribosomal protein L4/L1e [Geobacillus thermoglucosidasius C56-YS93]
gi|383365187|gb|EID42488.1| 50S ribosomal protein L4/L1e [Geobacillus thermoglucosidans
TNO-09.020]
Length = 207
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGETIGEIELNDSVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++V ++L + + KTK +V N + +K L+ +E + L+ +N+ V V+
Sbjct: 121 NNIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVT-DVANENVALSARNIPGVTVV 176
>gi|154505168|ref|ZP_02041906.1| hypothetical protein RUMGNA_02681 [Ruminococcus gnavus ATCC 29149]
gi|336433163|ref|ZP_08612989.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_58FAA]
gi|153794647|gb|EDN77067.1| 50S ribosomal protein L4 [Ruminococcus gnavus ATCC 29149]
gi|336017125|gb|EGN46893.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_58FAA]
Length = 206
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 99/161 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLSDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR +++KLNKK +R LK ALS+R AE K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSMKLNKKEKRAALKSALSSRVAENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKL 261
+V +++ KTK N N + K +++ + G ++ +L
Sbjct: 124 IVIDEMNFGEIKTKNFQNMLNSLNVNKALVVLEDGNVNAEL 164
>gi|304321441|ref|YP_003855084.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503]
gi|303300343|gb|ADM09942.1| 50S ribosomal protein L4 [Parvularcula bermudensis HTCC2503]
Length = 220
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 102/179 (56%), Gaps = 2/179 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V G + L D+F + R DI+HR V WQ AKRQQGTH K EV+GT
Sbjct: 1 MQIDVLTLDASKAGDLDLRDDIFGLEPRADILHRYVVWQQAKRQQGTHKAKERGEVTGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK RQKG+G ARHG + PQF GG HGP+ RSHA L KKVRRL L+ ALSA+
Sbjct: 61 KKFVRQKGSGGARHGNRKAPQFVGGGKAHGPRVRSHAHDLPKKVRRLALRHALSAKQGAA 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L++ ++ V KTK + ++ + L+ D + E A +NL V+VLP +
Sbjct: 121 ELIIIDEATVADVKTKVLAEKLQKL-GVRNSLVID-QSVDEGFARAARNLDGVDVLPVI 177
>gi|295694838|ref|YP_003588076.1| 50S ribosomal protein L4 [Kyrpidia tusciae DSM 2912]
gi|295410440|gb|ADG04932.1| ribosomal protein L4/L1e [Kyrpidia tusciae DSM 2912]
Length = 207
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 113/176 (64%), Gaps = 1/176 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L+ VF V ++ ++H+ V QLA +QGT +TK + V G G+K
Sbjct: 4 VAVYNAAGEQVGELELSEKVFGVDVKPAVLHQAVVAQLANARQGTRATKNRALVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ GG T+ GP+PR +++L KK+RRL ++ ALS++ +EG L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWVGGGTVFGPQPRDFSMRLPKKLRRLAIRGALSSKVSEGSL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V + L++ + KTK ++ + ++ K L+ G +++ L+ +N+ V LP+
Sbjct: 124 IVLDSLQIEAPKTKEMIRILSNLKVPGKALVVGEG-LNQPAHLSARNIPGVKYLPA 178
>gi|397905104|ref|ZP_10505976.1| LSU ribosomal protein L4p (L1e) [Caloramator australicus RC3]
gi|397161899|emb|CCJ33310.1| LSU ribosomal protein L4p (L1e) [Caloramator australicus RC3]
Length = 206
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 109/178 (61%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + L+ VF PI K+ +H+VV LA R+QGT S T +EVSG
Sbjct: 1 MPKVDLFNMNAEKVGEIELSDAVFGAPINKEAMHQVVVNILANRRQGTQSALTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHG++R PQ+R G + PKPR ++ L KK++R+ LK ALS++ AE
Sbjct: 61 GKKPWRQKGTGRARHGSIRSPQWRHGGIVFAPKPRDYSYTLPKKLKRVALKSALSSKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+++V + L + + KTK I + K +++ E + + +N+ +V+P
Sbjct: 121 NQIIVLDKLTLDAPKTKTIAEMLKKFNANKTLIVVKES--DEVIYKSVRNIENAHVIP 176
>gi|332655144|ref|ZP_08420885.1| ribosomal protein L4/L1 family protein [Ruminococcaceae bacterium
D16]
gi|332516004|gb|EGJ45613.1| ribosomal protein L4/L1 family protein [Ruminococcaceae bacterium
D16]
Length = 206
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 113/186 (60%), Gaps = 8/186 (4%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N + G + L+ VF + + ++H VV+ LA +QGT S T +EVSG GKKPW
Sbjct: 6 VFNMAGQQVGEIELSEAVFGIEPNQAVVHEVVKNHLANCRQGTQSALTRAEVSGGGKKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+ R PQ+ G + PKPR ++ LNKKV+RL LK ALSA+AA G +LV
Sbjct: 66 RQKGTGHARQGSTRAPQWTHGGIVFAPKPRDYSYTLNKKVKRLALKSALSAKAASGDILV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTT 282
++L++ + KTK + N+ N +E K V++ ++E + + +N +P VV +T
Sbjct: 126 VDELKLDAIKTKDMRNFLNAVEAGKSVVITPE--VNEIVVKSARN------IPGVVTTTA 177
Query: 283 QSFLIY 288
+ +Y
Sbjct: 178 KILSVY 183
>gi|319899098|ref|YP_004159191.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73]
gi|319403062|emb|CBI76617.1| 50S ribosomal protein L4 [Bartonella clarridgeiae 73]
Length = 206
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + ++ G + ++ VF + R+DI+ RVVRWQL +RQ+GTH ++ S+VS T
Sbjct: 2 DLMIKTLD--GKEAGKVKVSESVFGLIPREDILQRVVRWQLTRRQKGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRSHAHGLPKKVRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++L + KTK + ++++ LL G I A N+ ++VLP
Sbjct: 120 DDLIVVDELNIRDAKTKVLNANFSKL-GFNNALLIGGKEIDVNFFRAASNIPNIDVLP 176
>gi|260589278|ref|ZP_05855191.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583]
gi|331082684|ref|ZP_08331807.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA]
gi|260540359|gb|EEX20928.1| ribosomal protein L4/L1 family protein [Blautia hansenii DSM 20583]
gi|330400303|gb|EGG79945.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 6_1_63FAA]
Length = 206
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/180 (41%), Positives = 106/180 (58%), Gaps = 5/180 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L VF V I ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTMELNDAVFGVEINDHLVHLAVVRQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR +++K+NKK RR LK L++R E KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWAGGGVVFAPTPRDYSLKMNKKERRAALKSVLTSRVQENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCDGGCIHEKLKLATQNL-HYVNVLPSVV 278
+V ++L++ KTK + N N + +K V+L D + L+T+N+ V LP+ +
Sbjct: 124 IVLDELKLDEVKTKAMQNVLNNLNVSKALVVLADNDA---NVVLSTRNIPDVVTALPNTI 180
>gi|260893371|ref|YP_003239468.1| 50S ribosomal protein L4 [Ammonifex degensii KC4]
gi|260865512|gb|ACX52618.1| ribosomal protein L4/L1e [Ammonifex degensii KC4]
Length = 207
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 100/173 (57%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N E G M L +VF + ++H VV LA R++GTHSTKT EV G G+KPW
Sbjct: 6 VYNLAGEPVGEMELKEEVFGIEPNPYVVHEVVVMHLANRRRGTHSTKTRGEVRGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRARHG++R P +R G + GPKPR + + KKVRRL LK LS + G L+V
Sbjct: 66 RQKGTGRARHGSIRSPIWRKGGVVFGPKPRDYDYTVPKKVRRLALKSVLSDKLRAGNLVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
E+L + + KTK ++ VLL G +KLAT NL V LP
Sbjct: 126 LEELRLEAPKTKLAKELLSRFGVETGVLLV-GADPDPVVKLATANLEGVKFLP 177
>gi|294675857|ref|YP_003576472.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003]
gi|294474677|gb|ADE84065.1| 50S ribosomal protein L4 [Rhodobacter capsulatus SB 1003]
Length = 206
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/166 (46%), Positives = 103/166 (62%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDEALFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA L KK R LGL+ ALSA+A G L+V E ++
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLTKKFRALGLRHALSAKAKSGSLVVIEAADMAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + ++ KKVL+ DG ++E LA +NL ++VLP++
Sbjct: 134 KTALLAKAAKEL-GWKKVLVIDGASVNENFALAARNLDGIDVLPTM 178
>gi|304391454|ref|ZP_07373396.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130]
gi|303295683|gb|EFL90041.1| ribosomal protein, L4/L1 family [Ahrensia sp. R2A130]
Length = 206
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT G + L+ VF + R+DII R+VR+QLAK +QGTH + S+V TG
Sbjct: 1 MELDVTKMDGSKSGKVSLSDTVFGLEPRQDIIQRMVRYQLAKARQGTHQVQGRSDVDRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K+ +RQKGTG ARH + PQFRGG HGP+ R H+ L KK R L L+ ALSA+A G
Sbjct: 61 KRMYRQKGTGGARHHSQAAPQFRGGGKAHGPQSRDHSHDLTKKFRALALRHALSAKAQAG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V +DL KT + ++ + L+ G + KLA QN+ +++VLP
Sbjct: 121 TLVVVDDLAAKDPKTAALRGNLGKL-GFENALMIGGSELDNNFKLAAQNIPHIDVLP 176
>gi|312115688|ref|YP_004013284.1| 50S ribosomal protein L4 [Rhodomicrobium vannielii ATCC 17100]
gi|311220817|gb|ADP72185.1| ribosomal protein L4/L1e [Rhodomicrobium vannielii ATCC 17100]
Length = 206
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/166 (45%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L VF + R DI+ R+VR+QL+KRQ GTH K SEV+G KK ++QKGTG+
Sbjct: 12 NAGSVELDDAVFALEPRTDILQRMVRYQLSKRQAGTHKAKARSEVNGPNKKIYKQKGTGQ 71
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
ARHG + PQFRGG GP PRSHA L KKVR L LK ALS +A L+V + EV
Sbjct: 72 ARHGNDKPPQFRGGGRTAGPVPRSHAHDLPKKVRALALKHALSVKAKSDALVVLDKAEVT 131
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
KT + + + L+ DG + + LA +N+ V+VLP
Sbjct: 132 EAKTAQLRGKFAGL-GLSNALIIDGAVLQDNFALAARNIPNVDVLP 176
>gi|197104697|ref|YP_002130074.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1]
gi|226730702|sp|B4R8L8.1|RL4_PHEZH RecName: Full=50S ribosomal protein L4
gi|196478117|gb|ACG77645.1| 50S ribosomal protein L4 [Phenylobacterium zucineum HLK1]
Length = 212
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 103/167 (61%), Gaps = 2/167 (1%)
Query: 112 GFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
G + L D+F + IR DI+ R V WQLAKR+ GTH + +EVS TGKK ++QKGTG A
Sbjct: 14 GSIELPDDIFGIEEIRADILQRCVTWQLAKRRAGTHKIQVRNEVSRTGKKMYKQKGTGGA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG+ R QF GG HGP RSHA L KKVR L L+ ALS++A +G L+V + +
Sbjct: 74 RHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKVRALALRHALSSKAKDGSLIVLDSATLTE 133
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + ++ T +++ G + LKLA +N+ V+VLP+
Sbjct: 134 AKTAALRASFEKIGVTNALVIA-GAQVDNNLKLAARNIPNVDVLPNA 179
>gi|376298177|ref|YP_005169407.1| 50S ribosomal protein L4 [Desulfovibrio desulfuricans ND132]
gi|323460739|gb|EGB16604.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans ND132]
Length = 206
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 2/176 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + N G LA +VF+V I +I+++VVR Q A ++QGTH+TK + +G G+K
Sbjct: 4 IQVVDQNNTKVGDFELAPEVFEVEIMPEILNQVVRAQRASQRQGTHATKNRALKAGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ P +RGG GP+PR + K+NKKVR+L LK+ALS+R +E K+
Sbjct: 64 PWRQKGTGRARAGSSNSPLWRGGAAAFGPQPRDYTFKVNKKVRKLALKMALSSRVSEAKM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
V +++P KTK + K +++ KL ++ +N+ ++ V+ +
Sbjct: 124 TVVSSIDLPEIKTKAFAEVAKNLGLNKTLIVAKDA--DPKLTMSARNMPHIKVIEA 177
>gi|254470116|ref|ZP_05083520.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062]
gi|374332220|ref|YP_005082404.1| 50S ribosomal protein L4 [Pseudovibrio sp. FO-BEG1]
gi|211960427|gb|EEA95623.1| ribosomal protein, L4/L1 family [Pseudovibrio sp. JE062]
gi|359345008|gb|AEV38382.1| 50S ribosomal protein L4 [Pseudovibrio sp. FO-BEG1]
Length = 205
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 103/175 (58%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + ++ ++F + R D+I RVVRWQLAKRQ GTH + SEV+GT KK
Sbjct: 3 LEVKTLGGKAAGSITVSDEIFGLEPRIDLIQRVVRWQLAKRQAGTHKSLGRSEVNGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG+G ARHG + PQFRGG GP R HA L KKVR LGLK ALSA+AA G L
Sbjct: 63 FVRQKGSGGARHGNRKAPQFRGGGKAFGPVVREHAHDLPKKVRALGLKHALSAKAASGNL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ ED + KTK + + T L DG + LAT+N+ V+VLP
Sbjct: 123 YIVEDAKAAEAKTKALKEQLGSLGLT-SALFVDGAEVDANFGLATRNIPLVDVLP 176
>gi|94498477|ref|ZP_01305033.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58]
gi|94422020|gb|EAT07065.1| 50S ribosomal protein L4 [Sphingomonas sp. SKA58]
Length = 207
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V R DI+HRVV WQL KR+ +T+ S+V+ TGKK
Sbjct: 3 VNVQTLDAQTAGELELNDAVFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG + P F GG HG + R LNKKVR LGLK+ALSA+A +G L
Sbjct: 63 FGRQKGGGTARHGDRKAPIFIGGGKAHGARARDFGHDLNKKVRALGLKMALSAKAKDGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + +V KTK +V + ++ N K L DG ++ A+ N+ VN+LP+V
Sbjct: 123 IVLDSFDVAEGKTKTLVAHLAKL-NLNKALFIDGDAVNVSFAKASANIVGVNLLPAV 178
>gi|148284213|ref|YP_001248303.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong]
gi|189183952|ref|YP_001937737.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda]
gi|166234696|sp|A5CCL1.1|RL4_ORITB RecName: Full=50S ribosomal protein L4
gi|226730701|sp|B3CT06.1|RL4_ORITI RecName: Full=50S ribosomal protein L4
gi|146739652|emb|CAM79441.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Boryong]
gi|189180723|dbj|BAG40503.1| 50S ribosomal protein L4 [Orientia tsutsugamushi str. Ikeda]
Length = 210
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 102/180 (56%), Gaps = 4/180 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E + + L VF + R DII V+ WQLAKR GTH TKTIS VSGT KK
Sbjct: 3 VKVYNLLQEIEKEVELNPSVFCLKYRPDIIKLVIDWQLAKRMSGTHCTKTISGVSGTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G+LR Q RGG HGP RSH + KK+R+ LK ALS + + KL
Sbjct: 63 PFKQKGTGNARQGSLRSVQMRGGGISHGPVVRSHEFDVPKKIRKQALKYALSYKLSVNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNY---YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V +D + S+KT + N YN N D + LA++NL +NV+ +
Sbjct: 123 IVVDDFNIGSNKTAVLKNLLKKYN-YSNYSGFFCIDDQNVDRNFFLASRNLFNLNVVAQI 181
>gi|89070556|ref|ZP_01157845.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516]
gi|89043863|gb|EAR50061.1| 50S ribosomal protein L4 [Oceanicola granulosus HTCC2516]
Length = 206
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVVRWQ QQGTH KT E S + KK +RQKGTG AR
Sbjct: 14 GSVELDEELFGLEPRTDILHRVVRWQRNNAQQGTHKVKTRRETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH +L KK R+LGL+ ALSA+ G+L+V + +E+
Sbjct: 74 HGDRNAPIFRKGGVYKGPTPRSHGHELTKKFRKLGLRHALSAKQKAGELVVIDTIEIAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++E A +NL ++VLPS+
Sbjct: 134 KTSQLAKQVKNL-GWKRALVIDGAAVNEDFAKAARNLANLDVLPSM 178
>gi|269122980|ref|YP_003305557.1| 50S ribosomal protein L4 [Streptobacillus moniliformis DSM 12112]
gi|268314306|gb|ACZ00680.1| ribosomal protein L4/L1e [Streptobacillus moniliformis DSM 12112]
Length = 214
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 3/159 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D + V N E+KG ++ ++F + K ++H V+ +LA + GT STKT EVSG
Sbjct: 3 DFNLKVYNLNGEEKGVTTVSSEIFGLEPNKYVMHEVLTAELAASRAGTASTKTRGEVSGG 62
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+ R P GG +HGPKPR++ K+NKKVR+L LK AL+ R
Sbjct: 63 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYDKKVNKKVRKLALKSALAVRIQN 122
Query: 218 GKLLVFEDLEVPSHKTKFIVNY---YNQMENTKKVLLCD 253
G ++V ED + + KTK VN+ N +E+ K ++ D
Sbjct: 123 GDVIVLEDYMLDTPKTKAFVNFTEKVNMVEDKKLFIVND 161
>gi|338811126|ref|ZP_08623362.1| ribosomal protein L4/L1e [Acetonema longum DSM 6540]
gi|337276949|gb|EGO65350.1| ribosomal protein L4/L1e [Acetonema longum DSM 6540]
Length = 208
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 115/180 (63%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L +VF + + ++H+ + QLA R+QGT +TKT ++V G GKK
Sbjct: 4 VAVYNVAGQKTGEMELNENVFGIQFNEAVVHQALVMQLASRRQGTAATKTRAQVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R P + GG T+ GP+PRS++ ++ +KVRRL +K ALSA+ AEG+L
Sbjct: 64 PWKQKGTGRARAGSIRSPLWVGGGTVFGPQPRSYSFRMPRKVRRLAIKSALSAKVAEGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNY---YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
LV + + KTK +++ +N +N ++ + +E ++ +++N+ V + S+
Sbjct: 124 LVVDGIGFDQPKTKQVIDLLKNFNAADNKALIITAEE---NENVEKSSRNIEGVKAITSM 180
>gi|357419487|ref|YP_004932479.1| 50S ribosomal protein L4 [Thermovirga lienii DSM 17291]
gi|355396953|gb|AER66382.1| LSU ribosomal protein L4P [Thermovirga lienii DSM 17291]
Length = 208
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 95/154 (61%), Gaps = 4/154 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G L+ VF P+ +H+VV QLA R+QGTHSTK+ EV G G+K
Sbjct: 4 VKVVNLKGEIVGEQQLSDAVFSAPVHVPAMHQVVVAQLANRRQGTHSTKSRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQK TGRARHG+ R P + GG HGP PR + K+NKKVRRL LK ALS + E KL
Sbjct: 64 PWRQKHTGRARHGSRRSPIWVGGGVAHGPVPRDYHQKVNKKVRRLALKSALSLKVMEDKL 123
Query: 221 LVFE--DLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + D+E PS TK +V++ + KK L
Sbjct: 124 VVLDSFDMEKPS--TKAVVSFLESINGGKKPLFM 155
>gi|297717844|gb|ADI50065.1| LSU ribosomal protein L4p [Candidatus Odyssella thessalonicensis
L13]
Length = 206
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 104/175 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + G + L ++F + R DI+ RV+ WQLAKR+ G H TK + +V G+ +K
Sbjct: 3 IDVINIEAKKAGDIELNPEIFGLQPRVDILSRVIEWQLAKRRSGNHKTKEVGDVRGSTRK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ R QFRGG + GP RSHA L KKVR+LGLKIALSA+ G+L
Sbjct: 63 IYRQKGTGNARHGSKRQVQFRGGCVVFGPVVRSHAYSLPKKVRKLGLKIALSAKTQAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + +V + KTK ++ ++ +L+ + A NL +VLP
Sbjct: 123 IVVDSFKVATGKTKDLLKIITALQAPNALLIDAIANSDNPVVKAAANLEKFDVLP 177
>gi|393724013|ref|ZP_10343940.1| 50S ribosomal protein L4 [Sphingomonas sp. PAMC 26605]
Length = 208
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/162 (44%), Positives = 95/162 (58%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L +VF + R DI+HRVV WQL KR+ T+ S+V+ TGKK RQKG G ARHG
Sbjct: 18 LNDEVFGLDPRADILHRVVTWQLEKRRATASGTRERSDVARTGKKFGRQKGGGTARHGDR 77
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P F GG HG + R LNKK+R LGLK+ALS A G L+V + L V +KTK
Sbjct: 78 RAPIFVGGGKAHGQRTRDFNPGLNKKIRALGLKMALSTHAQAGTLVVMDSLGVAENKTKT 137
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ + ++ K L+ DG + LA NLH +NV+P+
Sbjct: 138 LIADWAKLGTGKTALVIDGDMVDTSFALAAGNLHTINVMPAA 179
>gi|293375390|ref|ZP_06621671.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis
PC909]
gi|325844472|ref|ZP_08168199.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1]
gi|292645943|gb|EFF63972.1| ribosomal protein L4/L1 family protein [Turicibacter sanguinis
PC909]
gi|325489146|gb|EGC91530.1| 50S ribosomal protein L4 [Turicibacter sp. HGF1]
Length = 207
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G +VL +F + K + V Q A +QGTH TKT +EV G
Sbjct: 1 MPQVALYNQQGAQVGEIVLNEAIFGIEPHKQAMFDAVIMQRASMRQGTHKTKTRTEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPW+QKGTGRAR G++R PQ+RGG + GP PRS+A KLNKKVRRL LK AL+ + E
Sbjct: 61 GRKPWKQKGTGRARQGSIRAPQWRGGGIVFGPVPRSYAYKLNKKVRRLALKSALATKVVE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+++V + L + KTK ++N + T K L+ + ++L+T+N+ V VL
Sbjct: 121 NEIVVLDQLVFEAPKTKQMINVLGALNVTSKALVVTAEE-NAAVELSTRNIPGVKVL 176
>gi|255282606|ref|ZP_05347161.1| ribosomal protein L4/L1 family protein [Bryantella formatexigens
DSM 14469]
gi|255266899|gb|EET60104.1| 50S ribosomal protein L4 [Marvinbryantia formatexigens DSM 14469]
Length = 206
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L+ VF V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTMELSDAVFGVEINEHLVHMAVLSQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR ++ K+NKK +R LK AL++R E KL
Sbjct: 64 PWRQKGTGHARQGSTRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVQENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V ++L++ + KTK +VN + N +K L+
Sbjct: 124 VVLDELKLDAIKTKSMVNVLKNV-NAEKALVV 154
>gi|399889063|ref|ZP_10774940.1| 50S ribosomal protein L4 [Clostridium arbusti SL206]
Length = 206
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 117/198 (59%), Gaps = 12/198 (6%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L+ ++F + D +H+VV QLA ++QG S KT SEVSG
Sbjct: 1 MPTVGLFNQEGKKVGDIELSTNIFGAEVNTDALHQVVVAQLANKRQGNQSAKTRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + I + K +RR+ +K ALS++ AE
Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIHGGIVFAPKPRDYRISVPKSMRRVAMKSALSSKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V E LE+ KTK ++ N ++ K +++ +E + + +N+ ++V+P+
Sbjct: 121 NEIIVLEGLELEVPKTKEMIKMLNAFDSKKALIVVAES--NENVYKSVRNIEGISVIPA- 177
Query: 278 VRSTTQSFLIYYYFLDFD 295
+ L Y L +D
Sbjct: 178 ------NNLNVYDILKYD 189
>gi|30018381|ref|NP_830012.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 14579]
gi|30260302|ref|NP_842679.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames]
gi|42779192|ref|NP_976439.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10987]
gi|47525367|ref|YP_016716.1| 50S ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor']
gi|49183145|ref|YP_026397.1| 50S ribosomal protein L4 [Bacillus anthracis str. Sterne]
gi|49476718|ref|YP_034463.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52145106|ref|YP_081722.1| 50S ribosomal protein L4 [Bacillus cereus E33L]
gi|118475880|ref|YP_893031.1| 50S ribosomal protein L4 [Bacillus thuringiensis str. Al Hakam]
gi|206972278|ref|ZP_03233225.1| 50S ribosomal protein L4 [Bacillus cereus AH1134]
gi|217957686|ref|YP_002336230.1| 50S ribosomal protein L4 [Bacillus cereus AH187]
gi|218234634|ref|YP_002364960.1| 50S ribosomal protein L4 [Bacillus cereus B4264]
gi|218895246|ref|YP_002443657.1| 50S ribosomal protein L4 [Bacillus cereus G9842]
gi|218901315|ref|YP_002449149.1| 50S ribosomal protein L4 [Bacillus cereus AH820]
gi|222093881|ref|YP_002527931.1| 50S ribosomal protein L4 [Bacillus cereus Q1]
gi|225862163|ref|YP_002747541.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102]
gi|227812784|ref|YP_002812793.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684]
gi|228898864|ref|ZP_04063146.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222]
gi|228905908|ref|ZP_04069805.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200]
gi|228912850|ref|ZP_04076497.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228919061|ref|ZP_04082440.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228925364|ref|ZP_04088460.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931613|ref|ZP_04094519.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228937414|ref|ZP_04100060.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228943917|ref|ZP_04106302.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228950659|ref|ZP_04112793.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228956552|ref|ZP_04118348.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228963211|ref|ZP_04124380.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228970300|ref|ZP_04130959.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228976870|ref|ZP_04137282.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
gi|228983366|ref|ZP_04143579.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229027959|ref|ZP_04184112.1| 50S ribosomal protein L4 [Bacillus cereus AH1271]
gi|229041016|ref|ZP_04189779.1| 50S ribosomal protein L4 [Bacillus cereus AH676]
gi|229067876|ref|ZP_04201193.1| 50S ribosomal protein L4 [Bacillus cereus F65185]
gi|229074172|ref|ZP_04207218.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18]
gi|229089242|ref|ZP_04220523.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42]
gi|229094833|ref|ZP_04225838.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29]
gi|229100910|ref|ZP_04231714.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28]
gi|229107797|ref|ZP_04237433.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15]
gi|229113787|ref|ZP_04243222.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3]
gi|229119773|ref|ZP_04249034.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201]
gi|229125628|ref|ZP_04254660.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4]
gi|229136957|ref|ZP_04265584.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26]
gi|229142917|ref|ZP_04271358.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24]
gi|229148520|ref|ZP_04276776.1| 50S ribosomal protein L4 [Bacillus cereus m1550]
gi|229153889|ref|ZP_04282019.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342]
gi|229159284|ref|ZP_04287308.1| 50S ribosomal protein L4 [Bacillus cereus R309803]
gi|229170962|ref|ZP_04298563.1| 50S ribosomal protein L4 [Bacillus cereus MM3]
gi|229176711|ref|ZP_04304115.1| 50S ribosomal protein L4 [Bacillus cereus 172560W]
gi|229182505|ref|ZP_04309756.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1]
gi|229188396|ref|ZP_04315444.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876]
gi|229194501|ref|ZP_04321304.1| 50S ribosomal protein L4 [Bacillus cereus m1293]
gi|229602888|ref|YP_002864762.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248]
gi|254684385|ref|ZP_05148245.1| 50S ribosomal protein L4 [Bacillus anthracis str. CNEVA-9066]
gi|254720833|ref|ZP_05182625.1| 50S ribosomal protein L4 [Bacillus anthracis str. A1055]
gi|254733588|ref|ZP_05191308.1| 50S ribosomal protein L4 [Bacillus anthracis str. Western North
America USA6153]
gi|254739508|ref|ZP_05197205.1| 50S ribosomal protein L4 [Bacillus anthracis str. Kruger B]
gi|254751227|ref|ZP_05203265.1| 50S ribosomal protein L4 [Bacillus anthracis str. Vollum]
gi|254756766|ref|ZP_05208795.1| 50S ribosomal protein L4 [Bacillus anthracis str. Australia 94]
gi|296500945|ref|YP_003662645.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171]
gi|300119577|ref|ZP_07057121.1| 50S ribosomal protein L4 [Bacillus cereus SJ1]
gi|301051848|ref|YP_003790059.1| 50S ribosomal protein L4 [Bacillus cereus biovar anthracis str. CI]
gi|365164085|ref|ZP_09360171.1| 50S ribosomal protein L4 [Bacillus sp. 7_6_55CFAA_CT2]
gi|375282209|ref|YP_005102644.1| 50S ribosomal protein L4 [Bacillus cereus NC7401]
gi|376264140|ref|YP_005116852.1| 50S ribosomal protein L4 [Bacillus cereus F837/76]
gi|384178018|ref|YP_005563780.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|384184197|ref|YP_005570093.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar chinensis
CT-43]
gi|386733977|ref|YP_006207158.1| 50S ribosomal protein L4 [Bacillus anthracis str. H9401]
gi|402554301|ref|YP_006595572.1| 50S ribosomal protein L4 [Bacillus cereus FRI-35]
gi|402562796|ref|YP_006605520.1| 50S ribosomal protein L4 [Bacillus thuringiensis HD-771]
gi|407708059|ref|YP_006831644.1| glycosyltransferase [Bacillus thuringiensis MC28]
gi|410672482|ref|YP_006924853.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
gi|421510439|ref|ZP_15957332.1| 50S ribosomal protein L4 [Bacillus anthracis str. UR-1]
gi|421640527|ref|ZP_16081109.1| 50S ribosomal protein L4 [Bacillus anthracis str. BF1]
gi|423357598|ref|ZP_17335193.1| 50S ribosomal protein L4 [Bacillus cereus IS075]
gi|423364465|ref|ZP_17341955.1| 50S ribosomal protein L4 [Bacillus cereus VD022]
gi|423376297|ref|ZP_17353611.1| 50S ribosomal protein L4 [Bacillus cereus AND1407]
gi|423381842|ref|ZP_17359125.1| 50S ribosomal protein L4 [Bacillus cereus BAG1O-2]
gi|423387403|ref|ZP_17364657.1| 50S ribosomal protein L4 [Bacillus cereus BAG1X1-2]
gi|423405165|ref|ZP_17382338.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-2]
gi|423415989|ref|ZP_17393109.1| 50S ribosomal protein L4 [Bacillus cereus BAG3O-2]
gi|423422344|ref|ZP_17399375.1| 50S ribosomal protein L4 [Bacillus cereus BAG3X2-2]
gi|423428217|ref|ZP_17405221.1| 50S ribosomal protein L4 [Bacillus cereus BAG4O-1]
gi|423439434|ref|ZP_17416372.1| 50S ribosomal protein L4 [Bacillus cereus BAG4X12-1]
gi|423439711|ref|ZP_17416617.1| 50S ribosomal protein L4 [Bacillus cereus BAG4X2-1]
gi|423450132|ref|ZP_17427010.1| 50S ribosomal protein L4 [Bacillus cereus BAG5O-1]
gi|423462615|ref|ZP_17439409.1| 50S ribosomal protein L4 [Bacillus cereus BAG5X2-1]
gi|423467968|ref|ZP_17444736.1| 50S ribosomal protein L4 [Bacillus cereus BAG6O-1]
gi|423480008|ref|ZP_17456722.1| 50S ribosomal protein L4 [Bacillus cereus BAG6X1-1]
gi|423507863|ref|ZP_17484430.1| 50S ribosomal protein L4 [Bacillus cereus HD73]
gi|423526591|ref|ZP_17503036.1| 50S ribosomal protein L4 [Bacillus cereus HuB1-1]
gi|423537368|ref|ZP_17513786.1| 50S ribosomal protein L4 [Bacillus cereus HuB2-9]
gi|423543096|ref|ZP_17519484.1| 50S ribosomal protein L4 [Bacillus cereus HuB4-10]
gi|423543598|ref|ZP_17519956.1| 50S ribosomal protein L4 [Bacillus cereus HuB5-5]
gi|423553955|ref|ZP_17530282.1| 50S ribosomal protein L4 [Bacillus cereus ISP3191]
gi|423565531|ref|ZP_17541807.1| 50S ribosomal protein L4 [Bacillus cereus MSX-A1]
gi|423572102|ref|ZP_17548316.1| 50S ribosomal protein L4 [Bacillus cereus MSX-A12]
gi|423578037|ref|ZP_17554156.1| 50S ribosomal protein L4 [Bacillus cereus MSX-D12]
gi|423578518|ref|ZP_17554629.1| 50S ribosomal protein L4 [Bacillus cereus VD014]
gi|423590602|ref|ZP_17566664.1| 50S ribosomal protein L4 [Bacillus cereus VD045]
gi|423608064|ref|ZP_17583957.1| 50S ribosomal protein L4 [Bacillus cereus VD102]
gi|423620281|ref|ZP_17596112.1| 50S ribosomal protein L4 [Bacillus cereus VD115]
gi|423626947|ref|ZP_17602722.1| 50S ribosomal protein L4 [Bacillus cereus VD148]
gi|423632020|ref|ZP_17607766.1| 50S ribosomal protein L4 [Bacillus cereus VD154]
gi|423638114|ref|ZP_17613766.1| 50S ribosomal protein L4 [Bacillus cereus VD156]
gi|423645070|ref|ZP_17620686.1| 50S ribosomal protein L4 [Bacillus cereus VD166]
gi|423646246|ref|ZP_17621816.1| 50S ribosomal protein L4 [Bacillus cereus VD169]
gi|423653045|ref|ZP_17628344.1| 50S ribosomal protein L4 [Bacillus cereus VD200]
gi|434378756|ref|YP_006613400.1| 50S ribosomal protein L4 [Bacillus thuringiensis HD-789]
gi|449086778|ref|YP_007419219.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452196489|ref|YP_007476570.1| LSU ribosomal protein L4p (L1e) [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|46576767|sp|Q81J41.1|RL4_BACCR RecName: Full=50S ribosomal protein L4
gi|46576769|sp|Q81VS9.1|RL4_BACAN RecName: Full=50S ribosomal protein L4
gi|81570005|sp|Q73F95.1|RL4_BACC1 RecName: Full=50S ribosomal protein L4
gi|81614034|sp|Q6HPQ7.1|RL4_BACHK RecName: Full=50S ribosomal protein L4
gi|81689839|sp|Q63H89.1|RL4_BACCZ RecName: Full=50S ribosomal protein L4
gi|166234634|sp|A0R8I1.1|RL4_BACAH RecName: Full=50S ribosomal protein L4
gi|226730615|sp|B7JKC0.1|RL4_BACC0 RecName: Full=50S ribosomal protein L4
gi|226730616|sp|B7IT20.1|RL4_BACC2 RecName: Full=50S ribosomal protein L4
gi|226730617|sp|B7HJ49.1|RL4_BACC4 RecName: Full=50S ribosomal protein L4
gi|226730618|sp|B7HQU5.1|RL4_BACC7 RecName: Full=50S ribosomal protein L4
gi|254803712|sp|C3P9Q6.1|RL4_BACAA RecName: Full=50S ribosomal protein L4
gi|254803713|sp|C3LJ83.1|RL4_BACAC RecName: Full=50S ribosomal protein L4
gi|254803714|sp|C1ET40.1|RL4_BACC3 RecName: Full=50S ribosomal protein L4
gi|254803715|sp|B9IZJ5.1|RL4_BACCQ RecName: Full=50S ribosomal protein L4
gi|29893921|gb|AAP07213.1| LSU ribosomal protein L1E/L4P [Bacillus cereus ATCC 14579]
gi|30253623|gb|AAP24165.1| 50S ribosomal protein L4 [Bacillus anthracis str. Ames]
gi|42735107|gb|AAS39047.1| ribosomal protein L4 [Bacillus cereus ATCC 10987]
gi|47500515|gb|AAT29191.1| ribosomal protein L4 [Bacillus anthracis str. 'Ames Ancestor']
gi|49177072|gb|AAT52448.1| ribosomal protein L4 [Bacillus anthracis str. Sterne]
gi|49328274|gb|AAT58920.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51978575|gb|AAU20125.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus
E33L]
gi|118415105|gb|ABK83524.1| LSU ribosomal protein L4P [Bacillus thuringiensis str. Al Hakam]
gi|206732852|gb|EDZ50027.1| 50S ribosomal protein L4 [Bacillus cereus AH1134]
gi|217062939|gb|ACJ77189.1| ribosomal protein L4 [Bacillus cereus AH187]
gi|218162591|gb|ACK62583.1| ribosomal protein L4 [Bacillus cereus B4264]
gi|218538801|gb|ACK91199.1| ribosomal protein L4 [Bacillus cereus AH820]
gi|218543914|gb|ACK96308.1| ribosomal protein L4 [Bacillus cereus G9842]
gi|221237929|gb|ACM10639.1| ribosomal protein L4 (50S ribosomal protein L4) [Bacillus cereus
Q1]
gi|225787946|gb|ACO28163.1| 50S ribosomal protein L4 [Bacillus cereus 03BB102]
gi|227006772|gb|ACP16515.1| 50S ribosomal protein L4 [Bacillus anthracis str. CDC 684]
gi|228588967|gb|EEK46982.1| 50S ribosomal protein L4 [Bacillus cereus m1293]
gi|228595070|gb|EEK52841.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 10876]
gi|228600960|gb|EEK58529.1| 50S ribosomal protein L4 [Bacillus cereus BGSC 6E1]
gi|228606754|gb|EEK64171.1| 50S ribosomal protein L4 [Bacillus cereus 172560W]
gi|228612502|gb|EEK69723.1| 50S ribosomal protein L4 [Bacillus cereus MM3]
gi|228624176|gb|EEK80978.1| 50S ribosomal protein L4 [Bacillus cereus R309803]
gi|228629570|gb|EEK86267.1| 50S ribosomal protein L4 [Bacillus cereus ATCC 4342]
gi|228634936|gb|EEK91509.1| 50S ribosomal protein L4 [Bacillus cereus m1550]
gi|228640538|gb|EEK96927.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST24]
gi|228646495|gb|EEL02702.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-ST26]
gi|228657820|gb|EEL13626.1| 50S ribosomal protein L4 [Bacillus cereus BDRD-Cer4]
gi|228663674|gb|EEL19253.1| 50S ribosomal protein L4 [Bacillus cereus 95/8201]
gi|228669658|gb|EEL25065.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-3]
gi|228675646|gb|EEL30854.1| 50S ribosomal protein L4 [Bacillus cereus Rock1-15]
gi|228682489|gb|EEL36562.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-28]
gi|228688576|gb|EEL42449.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-29]
gi|228694081|gb|EEL47763.1| 50S ribosomal protein L4 [Bacillus cereus Rock3-42]
gi|228708942|gb|EEL61069.1| 50S ribosomal protein L4 [Bacillus cereus Rock4-18]
gi|228715235|gb|EEL67094.1| 50S ribosomal protein L4 [Bacillus cereus F65185]
gi|228727313|gb|EEL78507.1| 50S ribosomal protein L4 [Bacillus cereus AH676]
gi|228733347|gb|EEL84176.1| 50S ribosomal protein L4 [Bacillus cereus AH1271]
gi|228776356|gb|EEM24709.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228782840|gb|EEM31006.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
gi|228789409|gb|EEM37329.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228796469|gb|EEM43908.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228803117|gb|EEM49939.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228809010|gb|EEM55495.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228815750|gb|EEM61986.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228822247|gb|EEM68229.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228828041|gb|EEM73769.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228834286|gb|EEM79827.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228840586|gb|EEM85848.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228846786|gb|EEM91791.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228853723|gb|EEM98483.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 200]
gi|228860764|gb|EEN05142.1| 50S ribosomal protein L4 [Bacillus thuringiensis IBL 4222]
gi|229267296|gb|ACQ48933.1| 50S ribosomal protein L4 [Bacillus anthracis str. A0248]
gi|296321997|gb|ADH04925.1| 50S ribosomal protein L4 [Bacillus thuringiensis BMB171]
gi|298723049|gb|EFI63947.1| 50S ribosomal protein L4 [Bacillus cereus SJ1]
gi|300374017|gb|ADK02921.1| 50S ribosomal protein L4 [Bacillus cereus biovar anthracis str. CI]
gi|324324102|gb|ADY19362.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|326937906|gb|AEA13802.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar chinensis
CT-43]
gi|358350732|dbj|BAL15904.1| ribosomal protein L4 [Bacillus cereus NC7401]
gi|363613386|gb|EHL64903.1| 50S ribosomal protein L4 [Bacillus sp. 7_6_55CFAA_CT2]
gi|364509940|gb|AEW53339.1| LSU ribosomal protein L4p (L1e) [Bacillus cereus F837/76]
gi|384383829|gb|AFH81490.1| 50S ribosomal protein L4 [Bacillus anthracis str. H9401]
gi|401072884|gb|EJP81338.1| 50S ribosomal protein L4 [Bacillus cereus VD022]
gi|401074464|gb|EJP82864.1| 50S ribosomal protein L4 [Bacillus cereus IS075]
gi|401088754|gb|EJP96936.1| 50S ribosomal protein L4 [Bacillus cereus AND1407]
gi|401094436|gb|EJQ02517.1| 50S ribosomal protein L4 [Bacillus cereus BAG3O-2]
gi|401112788|gb|EJQ20662.1| 50S ribosomal protein L4 [Bacillus cereus BAG4X12-1]
gi|401120061|gb|EJQ27862.1| 50S ribosomal protein L4 [Bacillus cereus BAG3X2-2]
gi|401126755|gb|EJQ34489.1| 50S ribosomal protein L4 [Bacillus cereus BAG5O-1]
gi|401127139|gb|EJQ34868.1| 50S ribosomal protein L4 [Bacillus cereus BAG4O-1]
gi|401130794|gb|EJQ38450.1| 50S ribosomal protein L4 [Bacillus cereus BAG5X2-1]
gi|401166796|gb|EJQ74096.1| 50S ribosomal protein L4 [Bacillus cereus HuB4-10]
gi|401182162|gb|EJQ89301.1| 50S ribosomal protein L4 [Bacillus cereus ISP3191]
gi|401187763|gb|EJQ94835.1| 50S ribosomal protein L4 [Bacillus cereus HuB5-5]
gi|401193733|gb|EJR00736.1| 50S ribosomal protein L4 [Bacillus cereus MSX-A1]
gi|401198824|gb|EJR05737.1| 50S ribosomal protein L4 [Bacillus cereus MSX-A12]
gi|401203617|gb|EJR10453.1| 50S ribosomal protein L4 [Bacillus cereus MSX-D12]
gi|401220239|gb|EJR26881.1| 50S ribosomal protein L4 [Bacillus cereus VD045]
gi|401221243|gb|EJR27867.1| 50S ribosomal protein L4 [Bacillus cereus VD014]
gi|401238747|gb|EJR45180.1| 50S ribosomal protein L4 [Bacillus cereus VD102]
gi|401248841|gb|EJR55162.1| 50S ribosomal protein L4 [Bacillus cereus VD115]
gi|401250142|gb|EJR56446.1| 50S ribosomal protein L4 [Bacillus cereus VD148]
gi|401262739|gb|EJR68877.1| 50S ribosomal protein L4 [Bacillus cereus VD154]
gi|401267765|gb|EJR73821.1| 50S ribosomal protein L4 [Bacillus cereus VD166]
gi|401271838|gb|EJR77841.1| 50S ribosomal protein L4 [Bacillus cereus VD156]
gi|401287875|gb|EJR93642.1| 50S ribosomal protein L4 [Bacillus cereus VD169]
gi|401303153|gb|EJS08716.1| 50S ribosomal protein L4 [Bacillus cereus VD200]
gi|401628468|gb|EJS46309.1| 50S ribosomal protein L4 [Bacillus cereus BAG1O-2]
gi|401628986|gb|EJS46814.1| 50S ribosomal protein L4 [Bacillus cereus BAG1X1-2]
gi|401645535|gb|EJS63190.1| 50S ribosomal protein L4 [Bacillus cereus BAG2X1-2]
gi|401791448|gb|AFQ17487.1| 50S ribosomal protein L4 [Bacillus thuringiensis HD-771]
gi|401795511|gb|AFQ09370.1| 50S ribosomal protein L4 [Bacillus cereus FRI-35]
gi|401819521|gb|EJT18698.1| 50S ribosomal protein L4 [Bacillus anthracis str. UR-1]
gi|401877313|gb|AFQ29480.1| 50S ribosomal protein L4 [Bacillus thuringiensis HD-789]
gi|402411835|gb|EJV44198.1| 50S ribosomal protein L4 [Bacillus cereus BAG6O-1]
gi|402421892|gb|EJV54136.1| 50S ribosomal protein L4 [Bacillus cereus BAG4X2-1]
gi|402423992|gb|EJV56188.1| 50S ribosomal protein L4 [Bacillus cereus BAG6X1-1]
gi|402442650|gb|EJV74571.1| 50S ribosomal protein L4 [Bacillus cereus HD73]
gi|402455631|gb|EJV87412.1| 50S ribosomal protein L4 [Bacillus cereus HuB1-1]
gi|402459074|gb|EJV90812.1| 50S ribosomal protein L4 [Bacillus cereus HuB2-9]
gi|403392343|gb|EJY89597.1| 50S ribosomal protein L4 [Bacillus anthracis str. BF1]
gi|407385744|gb|AFU16245.1| 50S ribosomal protein L4 [Bacillus thuringiensis MC28]
gi|409171611|gb|AFV15916.1| 50S ribosomal protein L4 [Bacillus thuringiensis Bt407]
gi|449020535|gb|AGE75698.1| 50S ribosomal protein L4 [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|452101882|gb|AGF98821.1| LSU ribosomal protein L4p (L1e) [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 207
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 105/174 (60%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA +F + + ++ V Q A +QGTH KT SEV G G+K
Sbjct: 4 VTVYNQTGSQVGEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A KL KKVRRL +K AL+ + E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYKLPKKVRRLAIKSALATKVVENNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V EDL + + KTK ++ + KK L+ +E ++L+ +N+ V V+
Sbjct: 124 VVLEDLVLNAPKTKDMLAVLKGLTVEKKALIVTADA-NESVELSARNIPGVTVI 176
>gi|344923959|ref|ZP_08777420.1| 50S ribosomal protein L4 [Candidatus Odyssella thessalonicensis
L13]
Length = 207
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 104/175 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + G + L ++F + R DI+ RV+ WQLAKR+ G H TK + +V G+ +K
Sbjct: 3 IDVINIEAKKAGDIELNPEIFGLQPRVDILSRVIEWQLAKRRSGNHKTKEVGDVRGSTRK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ R QFRGG + GP RSHA L KKVR+LGLKIALSA+ G+L
Sbjct: 63 IYRQKGTGNARHGSKRQVQFRGGCVVFGPVVRSHAYSLPKKVRKLGLKIALSAKTQAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + +V + KTK ++ ++ +L+ + A NL +VLP
Sbjct: 123 IVVDSFKVATGKTKDLLKIITALQAPNALLIDAIANSDNPVVKAAANLEKFDVLP 177
>gi|258406184|ref|YP_003198926.1| 50S ribosomal protein L4 [Desulfohalobium retbaense DSM 5692]
gi|257798411|gb|ACV69348.1| ribosomal protein L4/L1e [Desulfohalobium retbaense DSM 5692]
Length = 206
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 2/175 (1%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + + N+ G + L+ +VF+ +R +I+H+VVR QLA +++GT KT S + G G+
Sbjct: 3 VVQIVDKSNQAVGEVTLSSEVFEREVRAEILHQVVRSQLAAKRRGTVGVKTRSLIRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR GT+R P + GG +HGP+ R + IK+NKKV+RL LK+A+S+R AE
Sbjct: 63 KPWRQKGTGRARAGTVRSPIWTGGAIVHGPQARDYDIKVNKKVKRLALKMAMSSRLAEDN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L+V + + KTK Q+ + KK L+ L+L+ +N+ V V+
Sbjct: 123 LVVVDSVTPEEVKTKSFRKIQEQL-DLKKCLIVTAEK-DNTLELSARNIPGVTVM 175
>gi|374603260|ref|ZP_09676242.1| 50S ribosomal protein L4 [Paenibacillus dendritiformis C454]
gi|374391129|gb|EHQ62469.1| 50S ribosomal protein L4 [Paenibacillus dendritiformis C454]
Length = 207
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 96/152 (63%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA VF + K ++H V QLA +QGTH KT SEVSG G+K
Sbjct: 4 VAVYNISGAQVGEIELADTVFGIEPNKHVLHDAVVMQLASMRQGTHKVKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG T+ GP PRS+A KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVLAEQI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + + KTK N ++ +K L+
Sbjct: 124 IVLDQLTMNAPKTKEFAAILNNLKVDRKALVV 155
>gi|418057098|ref|ZP_12695146.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans 1NES1]
gi|353204799|gb|EHB70211.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans 1NES1]
Length = 205
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
VTN G + LA ++F + +R D+IHR+VR+Q KR GTH + SEV+ TGKK
Sbjct: 5 VTNLDASKAGDIDLADEIFGLEVRNDLIHRMVRYQTLKRMAGTHHAQDRSEVAVTGKKMT 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GPKPRSHAI+L KKVR L L+ ALS++A G+++V
Sbjct: 65 KQKGTGGARHGDKSAPQFRGGGKAFGPKPRSHAIELPKKVRALALRHALSSKAKAGEIVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
D KT + + ++ + L+ DG + A +N+ ++VLP
Sbjct: 125 I-DKATSEGKTGALKAQFAKL-SLDNALIIDGAELEPTFARAARNIPNIDVLP 175
>gi|440785462|ref|ZP_20962219.1| 50S ribosomal protein L4 [Clostridium pasteurianum DSM 525]
gi|440218358|gb|ELP57580.1| 50S ribosomal protein L4 [Clostridium pasteurianum DSM 525]
Length = 206
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 115/198 (58%), Gaps = 12/198 (6%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L+ +VF + D +H+VV LA ++QG S KT SEVSG
Sbjct: 1 MPTVGLFNKEGKKVGDIELSSEVFGTEVNSDALHQVVVALLANKRQGNQSAKTRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K ALS++ AE
Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIHGGIVFAPKPRDYRMSVPKSMRRVAMKSALSSKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V EDLE KTK +V N N+KK L+ ++ + + +N+ V V+P+
Sbjct: 121 NEIIVLEDLEFEVPKTKEVVKLLNAF-NSKKALIVVAES-NQNVYKSVRNIQGVTVIPA- 177
Query: 278 VRSTTQSFLIYYYFLDFD 295
+ L Y L +D
Sbjct: 178 ------NNLNVYDILKYD 189
>gi|326388198|ref|ZP_08209801.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM
19370]
gi|326207364|gb|EGD58178.1| 50S ribosomal protein L4 [Novosphingobium nitrogenifigens DSM
19370]
Length = 207
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 102/166 (61%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + R DI+HRVV WQL R+ + S+V+ TGKK RQKG G AR
Sbjct: 14 GDVELSDAVFGLEPRADILHRVVTWQLENRRGIARKARERSDVARTGKKFGRQKGGGTAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG + P F GG HGP+ R I LNKKVR LGLK+ALSA+A G L+V + L++
Sbjct: 74 HGDRKAPVFIGGGKAHGPRVREFNISLNKKVRALGLKMALSAKAKTG-LVVVDTLDLADA 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK +V + + KKVL+ DG ++E A +N+ VNVLP++
Sbjct: 133 KTKVLVGKFAKAGFGKKVLVVDGEAVNEGFARAARNIVGVNVLPAI 178
>gi|300022542|ref|YP_003755153.1| 50S ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC
51888]
gi|299524363|gb|ADJ22832.1| ribosomal protein L4/L1e [Hyphomicrobium denitrificans ATCC 51888]
Length = 205
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 104/173 (60%), Gaps = 2/173 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
VTN G + LA ++F + +R D+IHR+VR+Q KR GTH + SEV+ TGKK
Sbjct: 5 VTNLDASKAGDIDLADEIFGLEVRNDLIHRMVRYQTLKRMAGTHHAQDRSEVAVTGKKMT 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GPKPRSHAI+L KKVR L L+ ALS++A G+++V
Sbjct: 65 KQKGTGGARHGDKSAPQFRGGGKAFGPKPRSHAIELPKKVRALALRHALSSKAKAGEIVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
D KT + + ++ + L+ DG + A +N+ ++VLP
Sbjct: 125 I-DKATSEGKTGALKAQFAKL-SLDNALIIDGAELEPTFARAARNIPNIDVLP 175
>gi|170738702|ref|YP_001767357.1| 50S ribosomal protein L4 [Methylobacterium sp. 4-46]
gi|226730694|sp|B0UHW8.1|RL4_METS4 RecName: Full=50S ribosomal protein L4
gi|168192976|gb|ACA14923.1| ribosomal protein L4/L1e [Methylobacterium sp. 4-46]
Length = 206
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 100/173 (57%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+T + G + + +F + R D++ R VRWQLAKRQ GTH KT SE+S T KK +
Sbjct: 5 ITTLDGGEAGSVEVNEAIFGLEPRADLLQRCVRWQLAKRQAGTHKVKTRSEISRTTKKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG ARHG PQFRGG GP RSHA L KKVR L L+ ALSA+A L+V
Sbjct: 65 KQKGTGNARHGAASAPQFRGGARAFGPVVRSHAHDLPKKVRALALRHALSAKARAASLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+D+ + KTK + + + + L+ G + E A +NL ++VLP
Sbjct: 125 VDDVRLEDGKTKALKDRFGAL-GWSNALIIGGAEVDENFGRAARNLPSIDVLP 176
>gi|451947650|ref|YP_007468245.1| 50S ribosomal protein L4, bacterial/organelle [Desulfocapsa
sulfexigens DSM 10523]
gi|451906998|gb|AGF78592.1| 50S ribosomal protein L4, bacterial/organelle [Desulfocapsa
sulfexigens DSM 10523]
Length = 207
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 105/175 (60%), Gaps = 2/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N NE G + L DVFD+ +++ ++H VVR Q A ++ G STKT EV G G K
Sbjct: 4 VDIVNTSNEKVGEIELNADVFDLTVKEHLLHDVVRMQRAAKRAGNASTKTRREVRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR GT P +RGG GPKPR ++ KLN+KV++ L +A+SAR EG L
Sbjct: 64 PWKQKGTGRARAGTRNSPIWRGGGVTFGPKPRDYSFKLNRKVKQQALAMAMSARLQEGNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +D + + KTK V + +++ +G +E + + +N + VLP
Sbjct: 124 VVIDDFIMDAIKTKNFVGIMKGFDFENCLVVTEGN--YENVNKSARNANGFKVLP 176
>gi|294010614|ref|YP_003544074.1| ribosomal protein L4 [Sphingobium japonicum UT26S]
gi|390168172|ref|ZP_10220138.1| 50S ribosomal protein L4 [Sphingobium indicum B90A]
gi|292673944|dbj|BAI95462.1| ribosomal protein L4 [Sphingobium japonicum UT26S]
gi|389589238|gb|EIM67267.1| 50S ribosomal protein L4 [Sphingobium indicum B90A]
Length = 207
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V R DI+HRVV WQL KR+ +T+ S+V+ TGKK RQKG G ARHG + P
Sbjct: 22 VFGVEPRTDILHRVVTWQLEKRRAPARATRERSDVARTGKKFGRQKGGGTARHGDRKAPV 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG HG + R+ LNKKVR LGLK+ALS++A +G L+V ++L+V KTK +V +
Sbjct: 82 FIGGGKAHGARARTFGHDLNKKVRALGLKMALSSKAKDGSLIVLDNLDVAEGKTKALVAH 141
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ N K L DG ++ A+ N+ V++LP+V
Sbjct: 142 LAKL-NLNKALFIDGDAVNVSFAKASANIIGVDLLPAV 178
>gi|421858368|ref|ZP_16290638.1| ribosomal protein L4 [Paenibacillus popilliae ATCC 14706]
gi|410832047|dbj|GAC41075.1| ribosomal protein L4 [Paenibacillus popilliae ATCC 14706]
Length = 207
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 95/152 (62%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA VF + K ++H V QLA +QGTH KT SEVSG G+K
Sbjct: 4 VAVYNISGAQVGEIELADTVFGIEPNKHVLHDAVVMQLASMRQGTHKVKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG T+ GP PRS+A KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVLAEQI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + + KTK N + +K L+
Sbjct: 124 IVLDQLTMNAPKTKEFAAILNNLNVDRKALVV 155
>gi|410459931|ref|ZP_11313620.1| 50S ribosomal protein L4 [Bacillus azotoformans LMG 9581]
gi|409928042|gb|EKN65166.1| 50S ribosomal protein L4 [Bacillus azotoformans LMG 9581]
Length = 207
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 107/177 (60%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L+ VF + +++ + Q A R+QGTH K SEVSG
Sbjct: 1 MPKVALYNQAGSQVGEIELSDAVFGIEPNNNVLFDAIIMQRATRRQGTHKVKNRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKLPKKVRRLAIKSALSTKVLG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++V E+L + + KTK +V N + KKVL+ + ++L+ +N+ V V+
Sbjct: 121 NDVVVLENLTIEAPKTKDMVQVLNALSLNKKVLIVTADA-DQTIELSARNIPGVTVV 176
>gi|433447313|ref|ZP_20410910.1| 50S ribosomal protein L4 [Anoxybacillus flavithermus TNO-09.006]
gi|431999977|gb|ELK20884.1| 50S ribosomal protein L4 [Anoxybacillus flavithermus TNO-09.006]
Length = 207
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 109/177 (61%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N E+ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGENIGEIELNDAVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++V ++L++ + KTK +V N + +K L+ +E + L+ +N+ V V+
Sbjct: 121 NNIVVLDNLKLEAPKTKEMVKILNNLSVDRKALIVTADA-NENVILSARNIPGVTVV 176
>gi|389694571|ref|ZP_10182665.1| 50S ribosomal protein L4, bacterial/organelle [Microvirga sp.
WSM3557]
gi|388587957|gb|EIM28250.1| 50S ribosomal protein L4, bacterial/organelle [Microvirga sp.
WSM3557]
Length = 206
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 104/175 (59%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T + G + L +F + R D++ R VRWQLAKRQ GTH+ K S++ T KK
Sbjct: 3 LDITTLEGGNAGSVDLNETIFGLEPRADLLARCVRWQLAKRQAGTHAVKNRSDIDRTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP+ RSHA L KKVR L LK ALS++A + L
Sbjct: 63 VYKQKGTGSARHGAASAPQFRGGGRAFGPQVRSHAHDLPKKVRALALKHALSSKAKDASL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +D+++ KTK +V + ++ L+ G I + A +N+ ++VLP
Sbjct: 123 VVIDDVKLAEPKTKALVERFGKL-GLGNALIIGGAEIETNFQRAARNIPNIDVLP 176
>gi|84685436|ref|ZP_01013334.1| 50S ribosomal protein L4 [Maritimibacter alkaliphilus HTCC2654]
gi|84666593|gb|EAQ13065.1| 50S ribosomal protein L4 [Rhodobacterales bacterium HTCC2654]
Length = 205
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ QQGTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVELDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH +L KK R+LGLK ALSA+A EG ++V + E
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLKHALSAKAQEGAIVVIDTAEADG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK + + K+ L+ DG ++E A +N+ ++VLPS+
Sbjct: 133 KTKVLAKLVKDL-GWKRALIIDGAEVNENFAKAARNIEGLDVLPSM 177
>gi|56418642|ref|YP_145960.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426]
gi|261417608|ref|YP_003251290.1| 50S ribosomal protein L4 [Geobacillus sp. Y412MC61]
gi|297528483|ref|YP_003669758.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3]
gi|319765266|ref|YP_004130767.1| 50S ribosomal protein L4 [Geobacillus sp. Y412MC52]
gi|375006921|ref|YP_004980551.1| 50S ribosomal protein L4 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|448236416|ref|YP_007400474.1| 50S ribosomal protein L4 [Geobacillus sp. GHH01]
gi|81558135|sp|Q5L3Z6.1|RL4_GEOKA RecName: Full=50S ribosomal protein L4
gi|56378484|dbj|BAD74392.1| 50S ribosomal protein L4 [Geobacillus kaustophilus HTA426]
gi|261374065|gb|ACX76808.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC61]
gi|297251735|gb|ADI25181.1| ribosomal protein L4/L1e [Geobacillus sp. C56-T3]
gi|317110132|gb|ADU92624.1| ribosomal protein L4/L1e [Geobacillus sp. Y412MC52]
gi|359285767|gb|AEV17451.1| 50S ribosomal protein L4 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|445205258|gb|AGE20723.1| 50S ribosomal protein L4 [Geobacillus sp. GHH01]
Length = 207
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 110/179 (61%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGQTVGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V + L + + KTK +V N + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLSVDRKALIVT-DELNENVYLSARNIPGVKVVAA 178
>gi|296131837|ref|YP_003639084.1| 50S ribosomal protein L4 [Thermincola potens JR]
gi|296030415|gb|ADG81183.1| ribosomal protein L4/L1e [Thermincola potens JR]
Length = 206
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 95/148 (64%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
N E G + L +VF + + ++H VV QLA R+ GT STKT +EVSG G+KPWRQ
Sbjct: 8 NIKGEQVGEIELKDEVFGIEPNEGLVHDVVVMQLANRRVGTASTKTRAEVSGGGRKPWRQ 67
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
KGTGRARHG++R P +RGG GPKPRS + KK RRL LK LS++ ++G ++V +
Sbjct: 68 KGTGRARHGSIRSPIWRGGGITFGPKPRSFNYTMPKKARRLALKSVLSSKVSDGNIIVLD 127
Query: 225 DLEVPSHKTKFIVNYYNQMENTKKVLLC 252
LE+ KTK + N+++ K V++
Sbjct: 128 TLEMAQPKTKEMAEILNRLKAKKAVVVT 155
>gi|212637955|ref|YP_002314475.1| 50S ribosomal protein L4 [Anoxybacillus flavithermus WK1]
gi|226730612|sp|B7GJ68.1|RL4_ANOFW RecName: Full=50S ribosomal protein L4
gi|212559435|gb|ACJ32490.1| Ribosomal protein L4 [Anoxybacillus flavithermus WK1]
Length = 207
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 108/177 (61%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N E+ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGENIGEIELNDAVFGIEPNKHVLFEAVIMQRASLRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++V ++L + + KTK +V N + +K L+ +E + L+ +N+ V V+
Sbjct: 121 NSIVVLDNLTLEAPKTKEMVKILNNLSVDRKALIVTADA-NENVILSARNIPGVTVV 176
>gi|138893786|ref|YP_001124239.1| 50S ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2]
gi|166234670|sp|A4IJJ0.1|RL4_GEOTN RecName: Full=50S ribosomal protein L4
gi|134265299|gb|ABO65494.1| Ribosomal protein L4 [Geobacillus thermodenitrificans NG80-2]
Length = 207
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 110/179 (61%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V + L + + KTK +V N + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVT-DELNENVYLSARNIPGVKVVAA 178
>gi|325179760|emb|CCA14163.1| 50S ribosomal protein L4 putative [Albugo laibachii Nc14]
Length = 279
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 120/211 (56%), Gaps = 15/211 (7%)
Query: 77 PSDLLLKKTVLTP------DITIGLHQDLVIPVTN--FFNEDKGFMVLAGD--VFDVPIR 126
PS+L L TP T + D P+ N F ++ LA D VF+VP+R
Sbjct: 40 PSNLALAPQKPTPAPRLIRTTTEVAYDDAGRPIINTLAFKDESVVNTLALDPSVFNVPLR 99
Query: 127 KDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTM 186
KDI+HRVVRWQLA R+ G H K+ SE G+ +K QKG+G+AR G +R PQ+RGG +
Sbjct: 100 KDILHRVVRWQLACRRSGNHKAKSRSETRGSTRKVRPQKGSGQARVGDVRAPQWRGGYCV 159
Query: 187 HGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN--YYNQME 244
HGP R H+ L KKVR G+++ALS + EGKL + E+L+ KTK + + + +
Sbjct: 160 HGPVVRDHSYTLQKKVRAFGIRVALSQKLREGKLAIVENLDWDVVKTKELRDTLIARKWD 219
Query: 245 NTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
N L DG + L+++N+ ++V+P
Sbjct: 220 NA---LFIDGEEVTTNFILSSRNIPCIDVIP 247
>gi|329850208|ref|ZP_08265053.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19]
gi|328840523|gb|EGF90094.1| 50S ribosomal protein L4 [Asticcacaulis biprosthecum C19]
Length = 210
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 103/166 (62%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
G + L+ VF + IR DI+HRVV WQLAKR+ GTH +T +E S TGKK ++QKG+G A
Sbjct: 14 GSVELSDLVFGISDIRADILHRVVNWQLAKRRAGTHKVQTRNENSRTGKKMYKQKGSGGA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG+ R PQF GG+ GP RSHA L KKVR LGL+ ALS++ +G L+V + V S
Sbjct: 74 RHGSRRAPQFVGGSRAFGPVVRSHAFDLPKKVRALGLRHALSSKVKDGALIVLDQAVVAS 133
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
KT + + ++ L G + LA++N+ ++VLP+
Sbjct: 134 PKTSALKASFEKL-GLNNALFITGAEVDTNFALASRNIPNIDVLPT 178
>gi|407797891|ref|ZP_11144806.1| 50S ribosomal protein L4 [Salimicrobium sp. MJ3]
gi|407017654|gb|EKE30411.1| 50S ribosomal protein L4 [Salimicrobium sp. MJ3]
Length = 207
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + L VF + ++H V Q A ++QGTH KT EVSG
Sbjct: 1 MPKVALFNQSGSKVGDLDLNDAVFGIEPNTHVLHETVLMQQASKRQGTHKVKTRGEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR GT+R PQ+ GG T+ GP PRS++ KL KKVRRL L+ A S++ E
Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSAYSSKVQE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L E+L + + KTK +VN+ ++ + L+ E + L++ NL V +
Sbjct: 121 ENLYAVEELSMDAPKTKEVVNFLKALDANESALIITAQK-EENVVLSSNNLPKVETV 176
>gi|167748431|ref|ZP_02420558.1| hypothetical protein ANACAC_03175 [Anaerostipes caccae DSM 14662]
gi|317472036|ref|ZP_07931368.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA]
gi|167652423|gb|EDR96552.1| 50S ribosomal protein L4 [Anaerostipes caccae DSM 14662]
gi|316900440|gb|EFV22422.1| ribosomal protein L4/L1 family protein [Anaerostipes sp. 3_2_56FAA]
Length = 206
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 111/195 (56%), Gaps = 9/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + + L +F V I + ++H V QLA +QGT S KT SEV G G+K
Sbjct: 4 VSVLNMEGNEVEKLNLNDGIFGVEINEHLVHLAVVSQLANNRQGTQSAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + PKPR ++ KLNKK RRL LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPKPREYSKKLNKKERRLALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V ++ + KTK + N N + N KK L+ G ++ L L+ +N +P V +
Sbjct: 124 IVVDEFKFDDVKTKNVANMLNNL-NVKKALVIMGDK-NDNLILSARN------IPGVKTA 175
Query: 281 TTQSFLIYYYFLDFD 295
T + + Y L +D
Sbjct: 176 LTSTINV-YDILKYD 189
>gi|407474712|ref|YP_006789112.1| 50S ribosomal protein L4 [Clostridium acidurici 9a]
gi|407051220|gb|AFS79265.1| 50S ribosomal protein L4 [Clostridium acidurici 9a]
Length = 213
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 113/195 (57%), Gaps = 8/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +F V + + +++ VV+ QLA ++QGT S KT +EV G G+K
Sbjct: 10 VALYNVTGEQVGDIELNDSIFGVEVNQHVLYEVVKNQLANKRQGTQSVKTRAEVRGGGRK 69
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R PQ+ GG + PKPR ++ K+ KKVRRL +K ALS++ A ++
Sbjct: 70 PWRQKGTGRARQGSTRAPQWVGGGVVFAPKPRDYSYKVPKKVRRLAMKSALSSKVANNEI 129
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V ++L + + KTK + + + + KKVL+ +K A N +P V +
Sbjct: 130 IVLDELVLNAPKTKEMTSILKNINSAKKVLIVTADKDENVVKSA-------NNIPG-VET 181
Query: 281 TTQSFLIYYYFLDFD 295
T S L Y L D
Sbjct: 182 TLVSTLNVYDILKHD 196
>gi|303328093|ref|ZP_07358532.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3]
gi|345891281|ref|ZP_08842131.1| 50S ribosomal protein L4 [Desulfovibrio sp. 6_1_46AFAA]
gi|302861919|gb|EFL84854.1| ribosomal protein L4/L1 family protein [Desulfovibrio sp. 3_1_syn3]
gi|345048423|gb|EGW52258.1| 50S ribosomal protein L4 [Desulfovibrio sp. 6_1_46AFAA]
Length = 210
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 92/134 (68%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G M LA DVF++ +R +I++ VVR Q+A ++ GTH+ KT + VSG G K
Sbjct: 4 VKVYDQNKQESGEMTLASDVFEIEVRPEILNLVVRAQMAAKRAGTHNAKTRAFVSGGGVK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P +RGG + GP PR + K+N KVR L LK+ALS+R A L
Sbjct: 64 PWKQKGTGRARSGSNRSPIWRGGAIIFGPSPRDYGFKVNSKVRALALKMALSSRLAGESL 123
Query: 221 LVFEDLEVPSHKTK 234
LV + +E+P KTK
Sbjct: 124 LVVKGIELPEAKTK 137
>gi|148554273|ref|YP_001261855.1| 50S ribosomal protein L4 [Sphingomonas wittichii RW1]
gi|166199910|sp|A5V601.1|RL4_SPHWW RecName: Full=50S ribosomal protein L4
gi|148499463|gb|ABQ67717.1| LSU ribosomal protein L4P [Sphingomonas wittichii RW1]
Length = 208
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 102/166 (61%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +VF V R DI+ RVV+WQL R+ + + S+V+ TGKK RQKG G AR
Sbjct: 14 GDIELNDEVFAVEPRADILARVVQWQLHNRRAPARAARERSDVARTGKKFGRQKGGGTAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG R P F GG HGP+ R LNKKVR LGLK+ALS++A +GKL+V + LE+
Sbjct: 74 HGDRRAPVFIGGGKAHGPRARVFESSLNKKVRALGLKMALSSKAKDGKLVVVDTLELKDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK ++ ++ L+ DG + +LA+ N+H +NVLP++
Sbjct: 134 KTKALIAKIGKLGFGATALVIDGEAVDNGFQLASSNIHTINVLPAI 179
>gi|196251023|ref|ZP_03149705.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16]
gi|196209495|gb|EDY04272.1| ribosomal protein L4/L1e [Geobacillus sp. G11MC16]
Length = 207
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 110/179 (61%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + K ++ V Q A +QGTH TK +EVSG
Sbjct: 1 MPKVALYNQNGQTIGEIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V + L + + KTK +V N + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NDIVVLDQLSLEAPKTKEMVKILNNLAVDRKALIVT-DELNENVYLSARNIPGVKVVAA 178
>gi|99080088|ref|YP_612242.1| 50S ribosomal protein L4 [Ruegeria sp. TM1040]
gi|122398432|sp|Q1GK36.1|RL4_SILST RecName: Full=50S ribosomal protein L4
gi|99036368|gb|ABF62980.1| LSU ribosomal protein L4P [Ruegeria sp. TM1040]
Length = 205
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELSEDLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ E
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAEAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++E A +N+ +++LPS+
Sbjct: 133 KTAALAKQVANL-GWKRALVIDGAAVNEGFARAAKNIEGLDILPSM 177
>gi|335427953|ref|ZP_08554873.1| 50S ribosomal protein L4 [Haloplasma contractile SSD-17B]
gi|334893879|gb|EGM32088.1| 50S ribosomal protein L4 [Haloplasma contractile SSD-17B]
Length = 207
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + LA +VF + + +++ V Q A +QGTH TKT +EV G
Sbjct: 1 MPKVALFNQSGTQVGDIQLAEEVFGIEPNQQVLYDAVIMQRASLRQGTHKTKTRTEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ +LNKKVRRL L+ ALS + E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYRLNKKVRRLALRSALSTKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V + L S KT+ +V + + +K L+ G + + L+ +N+ LP+
Sbjct: 121 DSVVVLDSLTFESPKTQEMVQVLKNLVSNEKTLIVTGEE-NVNVMLSARNIPNAITLPA 178
>gi|154498884|ref|ZP_02037262.1| hypothetical protein BACCAP_02876 [Bacteroides capillosus ATCC
29799]
gi|150271724|gb|EDM98950.1| 50S ribosomal protein L4 [Pseudoflavonifractor capillosus ATCC
29799]
Length = 206
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 111/186 (59%), Gaps = 8/186 (4%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + + G + L+ +F + ++H V+ LA +QGT S T +EVSG G KPW
Sbjct: 6 VVDMTGKKVGEVDLSDAIFGIEPNVSVVHEAVKNHLANCRQGTQSALTRAEVSGGGIKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G+ R PQ+ G + PKPR ++ LNKKV+RL LK ALSA+AAEG ++V
Sbjct: 66 RQKGTGRARQGSTRAPQWTHGGVVFAPKPRDYSYTLNKKVKRLALKSALSAKAAEGNVIV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTT 282
+ L + + KTK + + +E+ K VL+ + ++E + L+ +N +P VV +T
Sbjct: 126 VDGLNLDAVKTKNMAAFLGAVESKKAVLVTNE--VNENVVLSARN------IPGVVTTTA 177
Query: 283 QSFLIY 288
+ +Y
Sbjct: 178 KLLSVY 183
>gi|121602068|ref|YP_988968.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583]
gi|121602137|ref|YP_988998.1| 50S ribosomal protein L4 [Bartonella bacilliformis KC583]
gi|421760771|ref|ZP_16197585.1| 50S ribosomal protein L4 [Bartonella bacilliformis INS]
gi|421760801|ref|ZP_16197615.1| 50S ribosomal protein L4 [Bartonella bacilliformis INS]
gi|120614245|gb|ABM44846.1| ribosomal protein L4 [Bartonella bacilliformis KC583]
gi|120614314|gb|ABM44915.1| ribosomal protein L4 [Bartonella bacilliformis KC583]
gi|411174539|gb|EKS44571.1| 50S ribosomal protein L4 [Bartonella bacilliformis INS]
gi|411174569|gb|EKS44601.1| 50S ribosomal protein L4 [Bartonella bacilliformis INS]
Length = 206
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 107/178 (60%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DL+I + + G + ++ VF + R+DI+ RVVRWQLA+RQ+GTH + S++S T
Sbjct: 2 DLIIKTLD--GKKTGELSVSEHVFGLVPREDILQRVVRWQLARRQKGTHKVQGRSDISRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK R LGL++ALSA+
Sbjct: 60 GAKMYKQKGTGRARHSSARAPQFRGGGKAHGPVIRSHAHGLPKKSRALGLRLALSAKFKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++ + KTK + ++++ LL G I A N+ ++VLP
Sbjct: 120 NDLIVIDEFNLQDPKTKVLATNFSKL-GFNNALLIGGKEIDVNFFRAASNIPNIDVLP 176
>gi|326792606|ref|YP_004310427.1| 50S ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427]
gi|326543370|gb|ADZ85229.1| ribosomal protein L4/L1e [Clostridium lentocellum DSM 5427]
Length = 207
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 103/169 (60%), Gaps = 1/169 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L +F V +++ ++H+ V LA R+QGT S KT +EV G G+K
Sbjct: 4 VAVLNMTGAQVGEVELNDSIFAVEVKEHLVHQAVVAHLANRRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R Q+ GG PKPR+++IK+N K RRL LK AL++R E K
Sbjct: 64 PWKQKGTGRARQGSIRAVQWVGGGVAFAPKPRNYSIKVNAKERRLALKSALTSRVNESKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLH 269
+V + LE+ KTK + N ++ K +++ +G + + L+ +N+
Sbjct: 124 IVLDSLELAEIKTKAMANVLEALKLNKALIVTEGEA-SKNVMLSAKNIQ 171
>gi|347730657|ref|ZP_08863771.1| 50S ribosomal protein L4 [Desulfovibrio sp. A2]
gi|347520576|gb|EGY27707.1| 50S ribosomal protein L4 [Desulfovibrio sp. A2]
Length = 206
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 102/155 (65%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ V +++DK G + LA +VF+V ++ +I++ VVR A + GTH+TKT + VSG
Sbjct: 1 MAVVKVYDQDKKEAGELTLAPEVFEVEVKPEILNLVVRAHRAGLRSGTHATKTRAFVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G+ R P +RGG + GP+PR + K+NKKVR+L LK+ALS+R A
Sbjct: 61 GAKPWRQKGTGRARSGSNRSPIWRGGAVIFGPQPREYGFKINKKVRQLALKMALSSRLAG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
L+V + +E+P KTK + + +K +++
Sbjct: 121 ENLMVVKGIELPGIKTKLFAKVADTLGLSKALVIT 155
>gi|150392159|ref|YP_001322208.1| 50S ribosomal protein L4 [Alkaliphilus metalliredigens QYMF]
gi|166990944|sp|A6TWI1.1|RL4_ALKMQ RecName: Full=50S ribosomal protein L4
gi|149952021|gb|ABR50549.1| ribosomal protein L4/L1e [Alkaliphilus metalliredigens QYMF]
Length = 207
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 110/188 (58%), Gaps = 7/188 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + M L+ ++F V + + +++ V+ QLA ++QGT S KT +EV G G+K
Sbjct: 4 VAVYNVSGQKVSEMELSENIFGVEVNEHVLYEAVKNQLANKRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR GT+R P + GG T+ PKPR H+ L +KV+RL LK AL+++ +L
Sbjct: 64 PWKQKGTGRARAGTIRSPLWIGGGTVFAPKPRDHSYTLPRKVKRLALKSALTSKVNNEEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
LV ++L + + KTK +VN + KKVLL G +K A+ +P V +
Sbjct: 124 LVLDELSLDTPKTKDMVNILKNLNADKKVLLVVGEKNEAIIKSASN-------IPGVTTA 176
Query: 281 TTQSFLIY 288
+ +Y
Sbjct: 177 LVNTINVY 184
>gi|332187850|ref|ZP_08389584.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17]
gi|332012200|gb|EGI54271.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17]
Length = 208
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 99/177 (55%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +F D + L +VF + R DI+HRVV WQL KR+ T+ ++V+ +GKK
Sbjct: 3 VKVQSFAGTDAADIELNDEVFGLDPRADILHRVVTWQLEKRRATARGTRERADVARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGLK+ALS+ A G L
Sbjct: 63 LGRQKGGGVARHGDRRAPVFIGGGKAHGARVRDFNPGLNKKVRALGLKMALSSHAKAGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V DL V +KTK + ++ K L+ DG + LA NL +NVLP+
Sbjct: 123 IVMNDLAVEGNKTKTLQGDLVKLGFGKTALVIDGDAVETSFALAAGNLKEINVLPAA 179
>gi|17987041|ref|NP_539675.1| 50S ribosomal protein L4 [Brucella melitensis bv. 1 str. 16M]
gi|17982697|gb|AAL51939.1| lsu ribosomal protein l1e (= l4p) [Brucella melitensis bv. 1 str.
16M]
Length = 201
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 1/167 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG
Sbjct: 1 MDLTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A
Sbjct: 61 SKMYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKAS 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLAT 265
L++ +DL KTK +V+ + ++ + LL G I + A
Sbjct: 121 DLIIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAA 166
>gi|147676656|ref|YP_001210871.1| 50S ribosomal protein L4 [Pelotomaculum thermopropionicum SI]
gi|189029511|sp|A5D5J1.1|RL4_PELTS RecName: Full=50S ribosomal protein L4
gi|146272753|dbj|BAF58502.1| ribosomal protein L4 [Pelotomaculum thermopropionicum SI]
Length = 206
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 96/155 (61%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N E G + L ++F V + + ++H V LA R+ GTH TKT SEV G
Sbjct: 1 MPTVALYNTNGEQVGELALKDEIFGVEVHEPVLHDAVVMHLANRRLGTHDTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHG++R P +RGG + GP PR ++ L +KVRRL LK ALSA+
Sbjct: 61 GRKPWRQKGTGRARHGSIRSPLWRGGGIIFGPHPRDYSYSLPRKVRRLALKSALSAKVNS 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
G +LV ++L++ KTK + N ++ +L+
Sbjct: 121 GDILVLDELKLDQPKTKEMARILNNLKVDDALLVT 155
>gi|452972597|gb|EME72426.1| 50S ribosomal protein L4 [Bacillus sonorensis L12]
Length = 207
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 106/179 (59%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEVSG
Sbjct: 1 MPKVALYNQNGSTAGEIELNDSVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+A KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+V EDL + + KTK + + KK L+ +E + L+ +NL V V+ +
Sbjct: 121 NNLIVLEDLTLDAVKTKEMAAVLKGLSIEKKALIVTADS-NETVALSARNLPGVTVVEA 178
>gi|347529948|ref|YP_004836696.1| 50S ribosomal protein L4 [Sphingobium sp. SYK-6]
gi|345138630|dbj|BAK68239.1| 50S ribosomal protein L4 [Sphingobium sp. SYK-6]
Length = 208
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V R DI+HRVV WQL KR+ +T+ S+V+ TGKK RQKG G ARHG R P
Sbjct: 23 VFGVEPRADILHRVVTWQLEKRRAPAAATRERSDVARTGKKFGRQKGGGTARHGDRRAPI 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
F GG HG + R+ LNKKVR LGLK+ALSA+A G L V ++L+V KT+ + +
Sbjct: 83 FIGGGKAHGQRARTFGHSLNKKVRALGLKMALSAKAKGGSLTVLDNLDVKDGKTRELAGH 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ N K L DG I+ A+ NL VNVLP++
Sbjct: 143 LAKL-NLGKTLFIDGEAINVSFAKASSNLVGVNVLPAI 179
>gi|319405897|emb|CBI79529.1| 50S ribosomal protein L4 [Bartonella sp. AR 15-3]
Length = 206
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 109/178 (61%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLV+ + ++ G + ++ ++F + R+DI+ RV+RWQLA+RQ+GTH ++ S+VS T
Sbjct: 2 DLVVKTLD--GKEAGKLKVSENIFGLTPREDILQRVIRWQLARRQKGTHPSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP R HA L KKVR LGL++ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVMRCHAHSLPKKVRALGLRLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + L + KTK + ++++ LL G + A N+ ++VLP
Sbjct: 120 DSLIVVDKLSIRDAKTKALNESFSKL-GFNNALLIGGKEVDMNFFRAASNIPNIDVLP 176
>gi|402299395|ref|ZP_10819006.1| 50S ribosomal protein L4 [Bacillus alcalophilus ATCC 27647]
gi|401725433|gb|EJS98718.1| 50S ribosomal protein L4 [Bacillus alcalophilus ATCC 27647]
Length = 207
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + L +F + K ++H + Q A +QGTH TK SEV G
Sbjct: 1 MPKVALFNQSGSQVGDIELVESIFGLEPNKAVLHDAIVMQQASLRQGTHKTKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR GT+R PQ+ GG + GP PRS++ KL KKVRRL +K ALS++
Sbjct: 61 GRKPWRQKGTGRARQGTIRAPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+++V EDL+ S KTK +VN + K L+ EK+ L+ +N+
Sbjct: 121 AEIVVLEDLKFDSIKTKDMVNVLAALSVDSKALVVTANY-DEKVALSARNI 170
>gi|83949794|ref|ZP_00958527.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM]
gi|83837693|gb|EAP76989.1| 50S ribosomal protein L4 [Roseovarius nubinhibens ISM]
Length = 205
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ K QQGTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVDLGEDIFGLEPRADILHRVVRWQRNKAQQGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSHA L KKVR LGLK ALSA+ G+L++ E + +
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHAHDLPKKVRMLGLKHALSAKVKAGELVIIEAAD-SAG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++ + A +N+ ++VLPS+
Sbjct: 133 KTSALAKQVKDL-GWKRALIIDGAEVNAEFAKAARNIEGLDVLPSM 177
>gi|289423702|ref|ZP_06425501.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius
653-L]
gi|429727971|ref|ZP_19262717.1| 50S ribosomal protein L4 [Peptostreptococcus anaerobius VPI 4330]
gi|289155952|gb|EFD04618.1| ribosomal protein, L4/L1 family [Peptostreptococcus anaerobius
653-L]
gi|429150828|gb|EKX93722.1| 50S ribosomal protein L4 [Peptostreptococcus anaerobius VPI 4330]
Length = 207
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 110/191 (57%), Gaps = 4/191 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L +FD+ + + +++ V+ QLA ++QGT S KT +EV G G+K
Sbjct: 4 INVLNVSGQNVGEIELNDSIFDIEVNEHVLYEAVKCQLANKRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R Q+ GG PKPR ++ L KKVRRL +K ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQDKEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC----DGGCIHEKLKLATQNLHYVNVLPS 276
+V + L + + KTK IVN + + KK L+ D + + N+ +V+ L
Sbjct: 124 IVLDALSLEAPKTKEIVNLFKNVNAAKKTLVVTAENDVNVVKSVRNIEGANVAHVSTLNV 183
Query: 277 VVRSTTQSFLI 287
SF+I
Sbjct: 184 YDILNCDSFII 194
>gi|254502843|ref|ZP_05114994.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11]
gi|222438914|gb|EEE45593.1| ribosomal protein L4/L1 family [Labrenzia alexandrii DFL-11]
Length = 206
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ ++F + R D+IHRVVRWQLAKRQ GTH T SEV+G+ KK RQKG+G AR
Sbjct: 14 GSITVSDEIFGLDPRTDLIHRVVRWQLAKRQAGTHKTLGRSEVTGSTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG + PQFRGG GP R H L KKVR LGLK ALSA+A ++V ED +
Sbjct: 74 HGNKKAPQFRGGGRAFGPVVRDHGHDLPKKVRVLGLKHALSAKAKADSIVVVEDAKAAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
KTK + + N++ T L+ DG + LA++N+ +++VLP
Sbjct: 134 KTKALKSQLNKLGLT-SALVIDGAEVDNNFALASRNIPHLDVLP 176
>gi|87199271|ref|YP_496528.1| 50S ribosomal protein L4 [Novosphingobium aromaticivorans DSM
12444]
gi|109893614|sp|Q2G8X9.1|RL4_NOVAD RecName: Full=50S ribosomal protein L4
gi|87134952|gb|ABD25694.1| LSU ribosomal protein L4P [Novosphingobium aromaticivorans DSM
12444]
Length = 207
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
KG + L+ DVF + R DI+HRVV WQL R+ + S+V+ TGKK RQKG G A
Sbjct: 14 KGEVELSDDVFGLEPRADILHRVVTWQLENRRGIARKARERSDVARTGKKFGRQKGGGTA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG + P F GG HGP+ R I LNKKVR LGLK+ALS++A G L+V ++L+V +
Sbjct: 74 RHGDRKAPIFIGGGKAHGPRVREFNISLNKKVRALGLKMALSSKAKAG-LVVVDNLDVDA 132
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK +V + KKVL+ DG +++ A +N+ VNVLP++
Sbjct: 133 -KTKALVGQLAKANWGKKVLVIDGEGVNDNFAKAARNIVGVNVLPAI 178
>gi|253681900|ref|ZP_04862697.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873]
gi|416350125|ref|ZP_11680767.1| 50S ribosomal protein L4 [Clostridium botulinum C str. Stockholm]
gi|253561612|gb|EES91064.1| ribosomal protein, L4 [Clostridium botulinum D str. 1873]
gi|338196362|gb|EGO88559.1| 50S ribosomal protein L4 [Clostridium botulinum C str. Stockholm]
Length = 206
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 111/178 (62%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N + G + LA VF V + D++H+VV QLA ++QGT S KT +EVSG
Sbjct: 1 MPTVDLYNREGQKVGDLQLAEAVFAVEVNADVLHQVVVAQLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++R+ +K AL+++ +
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMAIPKSMKRVAMKSALTSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L+V E+LE+ + KTK +V N E K +++ +E + + +N+ V+P
Sbjct: 121 QELVVLENLELEAPKTKEMVKMINAFEAKKPLIVVAES--NEVVYKSIRNIEGATVVP 176
>gi|415886278|ref|ZP_11548101.1| 50S ribosomal protein L4 [Bacillus methanolicus MGA3]
gi|387588931|gb|EIJ81252.1| 50S ribosomal protein L4 [Bacillus methanolicus MGA3]
Length = 207
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 106/179 (59%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + K ++ V Q A +QGTH TK SEVSG
Sbjct: 1 MPKVALFNQNGSQVGEIELNDAVFGIEPNKHVLFEAVVMQRASLRQGTHKTKIRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LV E+L + KTK V + K L+ + E + L+ +N+ V V+ +
Sbjct: 121 ENILVLENLVFETPKTKDFVGVLKNLSVDSKALVVTAD-LDENVALSARNIPGVTVVAA 178
>gi|347543074|ref|YP_004857712.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-rat-Yit]
gi|346986111|dbj|BAK81786.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-rat-Yit]
Length = 208
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 102/175 (58%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L +VFDV I+K +H+VV QLA ++QGTHS KT SEVSG GKK
Sbjct: 4 VEVYNICGEKVGELELLKEVFDVEIKKYAVHQVVVAQLANKRQGTHSAKTRSEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + PKPR + + ++K +RR + L+++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRMSISKTLRRAAITSVLTSKLKEKNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
LV ++ KTK +V N ++ +LL + T NL V VLP
Sbjct: 124 LVLNEISFDFPKTKEMVKIMNNLKIDSNMLLVTETSDKNVYRSGT-NLQSVKVLP 177
>gi|395784124|ref|ZP_10463963.1| 50S ribosomal protein L4 [Bartonella melophagi K-2C]
gi|395423879|gb|EJF90067.1| 50S ribosomal protein L4 [Bartonella melophagi K-2C]
Length = 206
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 105/178 (58%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +F + R+DI+ RVVRWQLA+RQQG H ++ S+V+ T
Sbjct: 2 DLVIKTLD--GNEAGKLKVSKHIFGLAPREDILQRVVRWQLARRQQGAHQSQGRSDVART 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG H P RSH L KK R LGL +ALS +
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHSPMARSHVHILPKKSRALGLCLALSVKLKT 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++L V KTK + ++++ LL G I+ A N+ ++VLP
Sbjct: 120 NDLIVVDELNVQDAKTKVLAKSFSKL-GFNNALLIGGKEINMNFSRAASNIPNIDVLP 176
>gi|307244773|ref|ZP_07526874.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis
DSM 17678]
gi|306491871|gb|EFM63923.1| ribosomal protein L4/L1 family protein [Peptostreptococcus stomatis
DSM 17678]
Length = 207
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 110/191 (57%), Gaps = 4/191 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L +F++ + +++ V+ QLA ++QGT S KT +EV G G+K
Sbjct: 4 INVLNVSGQNVGEIELNDSIFNIEVNAHVLYEAVKCQLANKRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R Q+ GG PKPR ++ L KKVRRL +K ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRSVQWVGGGVAFAPKPRDYSYSLPKKVRRLAMKSALSSKVQDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC----DGGCIHEKLKLATQNLHYVNVLPS 276
+V + L + + KTK +VN + + KKVL+ D + + N+ +V+ L
Sbjct: 124 IVLDALSLEAPKTKEMVNTFKNLNAAKKVLVVTAENDANIVKSVRNIEGANVCHVSTLNV 183
Query: 277 VVRSTTQSFLI 287
SF+I
Sbjct: 184 YDILNCDSFII 194
>gi|56551414|ref|YP_162253.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis ZM4]
gi|260752973|ref|YP_003225866.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|384411965|ref|YP_005621330.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|397676626|ref|YP_006518164.1| 50S ribosomal protein L4 [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|81598314|sp|Q5NQ63.1|RL4_ZYMMO RecName: Full=50S ribosomal protein L4
gi|56542988|gb|AAV89142.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ZM4]
gi|258552336|gb|ACV75282.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis NCIMB
11163]
gi|335932339|gb|AEH62879.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|395397315|gb|AFN56642.1| ribosomal protein L4/L1e [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 207
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + KG + L VF + R DI+HRVV WQL KR+ T +T+ S+V+ +GKK
Sbjct: 3 VEVQSLDASKKGSIELNDAVFGIEPRADILHRVVTWQLEKRRAPTRATRERSDVARSGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGL++ALS++A G L
Sbjct: 63 FGRQKGGGTARHGDRRSPIFIGGGKAHGARARVFNPSLNKKVRALGLRMALSSKAKTGTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V E L+V + KTK + + KVL+ DG ++E A+ NL ++VLP+V
Sbjct: 123 VVIEALDVEA-KTKLLAAQIQSLGFGPKVLVVDGDTVNENFARASSNLVGLDVLPAV 178
>gi|317153957|ref|YP_004122005.1| 50S ribosomal protein L4 [Desulfovibrio aespoeensis Aspo-2]
gi|316944208|gb|ADU63259.1| ribosomal protein L4/L1e [Desulfovibrio aespoeensis Aspo-2]
Length = 206
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + N+ G + LA +VF+V I+ +I++ VVR Q A ++ GTH+TKT SG G+K
Sbjct: 4 LQVVDQNNQKVGDIELAPEVFEVEIQPEILNLVVRAQRAAKRSGTHATKTRGMKSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG + GP+PR ++ K+NKK+R+L L++ALS+R AE K+
Sbjct: 64 PWRQKGTGRARAGSSRSPLWRGGAVLFGPQPRDYSFKVNKKIRKLALQMALSSRVAEDKV 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
V + +++ KTK ++ K +++ ++ L L+ +N+ + V+ +
Sbjct: 124 TVVKSIDLAEIKTKAFAAVVEKLGLGKTLIVLKDADLN--LALSARNVPGIKVIEA 177
>gi|315497974|ref|YP_004086778.1| 50S ribosomal protein L4/l1e [Asticcacaulis excentricus CB 48]
gi|315415986|gb|ADU12627.1| ribosomal protein L4/L1e [Asticcacaulis excentricus CB 48]
Length = 210
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 106/178 (59%), Gaps = 2/178 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ V N G + ++ VF + IR DI+ RVV WQLAKR+ GTH +T +E S TGK
Sbjct: 3 LDVITLDNGTAGSVDVSDAVFGLEEIRNDILARVVNWQLAKRRAGTHKVQTRNENSRTGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K ++QKG+G ARHG+ R PQF GG+ GP RSHA L KKVR LGL+ ALS++A G
Sbjct: 63 KMYKQKGSGGARHGSRRAPQFVGGSRAFGPVVRSHAFDLQKKVRALGLRHALSSKAKAGA 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + + S KT + + + K L+ G + LA++N+ ++VLPS
Sbjct: 123 LIVLDQATLDSAKTAALRAKFETL-GLKNALIIAGPEVDTNFALASRNIPNIDVLPSA 179
>gi|381201001|ref|ZP_09908132.1| 50S ribosomal protein L4 [Sphingobium yanoikuyae XLDN2-5]
gi|427408973|ref|ZP_18899175.1| 50S ribosomal protein L4 [Sphingobium yanoikuyae ATCC 51230]
gi|425713283|gb|EKU76297.1| 50S ribosomal protein L4 [Sphingobium yanoikuyae ATCC 51230]
Length = 207
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + R DI+HRVV WQL KR+ T+ S+V+ TGKK RQKG G AR
Sbjct: 14 GELELNDAVFGLEPRADILHRVVTWQLEKRRGTARGTRERSDVARTGKKFGRQKGGGTAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG R P F GG HG + R LNKKVR LGLK+ALS++ +G L++ ++L+V
Sbjct: 74 HGDRRAPVFIGGGKAHGARVRDFNPSLNKKVRALGLKMALSSKVKDGSLIILDNLDVAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK +V ++ N KVL DG ++ A+ N+ VN+LP+V
Sbjct: 134 KTKALVANLAKL-NLNKVLFIDGDAVNVSFAKASANIVGVNLLPAV 178
>gi|403238407|ref|ZP_10916993.1| 50S ribosomal protein L4 [Bacillus sp. 10403023]
Length = 207
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 110/179 (61%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N+ G + L VF + + ++ V Q A +QGTH TK SEV+G
Sbjct: 1 MPKVSLYNQTGSSVGEIELNDSVFGIEPNQQVLFDAVIMQRASLRQGTHKTKIRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS + E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSTKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LV ++L + + KTK +V + +K L+ I+E ++L+ +N+ V V+ +
Sbjct: 121 ENILVLDNLVLETPKTKDMVAVLKGLNVDRKALIVTAD-INEAVELSARNIPGVTVVAA 178
>gi|227499194|ref|ZP_03929329.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21]
gi|352685684|ref|YP_004897669.1| 50S ribosomal protein L4 [Acidaminococcus intestini RyC-MR95]
gi|226904641|gb|EEH90559.1| 50S ribosomal protein L4/L1e [Acidaminococcus sp. D21]
gi|350280339|gb|AEQ23529.1| 50S ribosomal protein L4/L1e [Acidaminococcus intestini RyC-MR95]
Length = 209
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 4/159 (2%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V + ++H+ V Q A +QGTH+TKT V G G+KPW+QKGTGRAR G++R P
Sbjct: 24 VFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRGGGRKPWKQKGTGRARAGSVRSPL 83
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+ GG T+ GP PRSHAI + +K RRL ++ ALS++ A+G L++ + L +KTK V
Sbjct: 84 WVGGGTIFGPSPRSHAIDMPRKARRLAIRCALSSKVADGSLVIVDGLSFADNKTKNTVEM 143
Query: 240 YNQME--NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
E N K +++ DG +E ++L+++N+ V L +
Sbjct: 144 LKGFEASNKKALIITDGE--NENVELSSRNIEKVKALSN 180
>gi|398813175|ref|ZP_10571877.1| 50S ribosomal protein L4, bacterial/organelle [Brevibacillus sp.
BC25]
gi|398039336|gb|EJL32474.1| 50S ribosomal protein L4, bacterial/organelle [Brevibacillus sp.
BC25]
Length = 207
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 103/171 (60%), Gaps = 4/171 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + +++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQSGSQVGEIDLADSVFGIEPNSAVLYDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALSA+
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSAKVQS 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
++LV E L + + KTK + N ++ +KVL+ + + LA++N+
Sbjct: 121 NEILVLEALNIAAPKTKEMTVVLNNLKADRKVLIVTSEY-DQNVALASRNI 170
>gi|56961933|ref|YP_173655.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16]
gi|81601105|sp|Q5WLR1.1|RL4_BACSK RecName: Full=50S ribosomal protein L4
gi|56908167|dbj|BAD62694.1| 50S ribosomal protein L4 [Bacillus clausii KSM-K16]
Length = 207
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN+ G + LA +VF V + ++H V Q A +QGTH TK SEV G
Sbjct: 1 MPKVSLFNQTGSQVGEIELADNVFGVEPNESVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+L+V +DL++ + KTK + + + K L+ +E + L+ +NL
Sbjct: 121 SELVVLDDLKLEAIKTKAMKDVLASLSVDSKALVVTADY-NENVALSARNL 170
>gi|299820956|ref|ZP_07052845.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601]
gi|299817977|gb|EFI85212.1| ribosomal protein L4/L1 family protein [Listeria grayi DSM 20601]
Length = 207
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 105/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +D G + L VF + + ++ V+ Q A +QGTH K SEV G
Sbjct: 1 MPKLSLLKQDGTSAGEITLNDAVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+A KL +KVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLAIKSALSSKVKE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
LLV E+L + KTK + + K L+ G + ++L+ +NL + V+P+
Sbjct: 121 ENLLVLENLAFDAPKTKDFAAFLKNISVDTKALVVVAGE-SDNVELSARNLQGITVIPA 178
>gi|116873997|ref|YP_850778.1| 50S ribosomal protein L4 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123461454|sp|A0ALW7.1|RL4_LISW6 RecName: Full=50S ribosomal protein L4
gi|116742875|emb|CAK21999.1| ribosomal protein L4 [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 207
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 100/167 (59%), Gaps = 1/167 (0%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L VF + + ++ V+ Q A +QGTH K SEV G G+KPWRQKGTGR
Sbjct: 13 NAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS++ E KL+V E L
Sbjct: 73 ARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFD 132
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ KTK + + K L+ G E ++L+ +NL + V+P+
Sbjct: 133 APKTKEFATFLKNISVDTKALIVVAGE-SENVELSARNLQGITVIPA 178
>gi|52078610|ref|YP_077401.1| 50S ribosomal protein L4 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319649115|ref|ZP_08003323.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2]
gi|404487480|ref|YP_006711586.1| 50S ribosomal protein L4 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680509|ref|ZP_17655348.1| 50S ribosomal protein L4 [Bacillus licheniformis WX-02]
gi|81667231|sp|Q65PA6.1|RL4_BACLD RecName: Full=50S ribosomal protein L4
gi|52001821|gb|AAU21763.1| ribosomal protein L4 [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|52346474|gb|AAU39108.1| 50S ribosomal protein L4 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|317388815|gb|EFV69634.1| 50S ribosomal protein L4 [Bacillus sp. BT1B_CT2]
gi|383441615|gb|EID49324.1| 50S ribosomal protein L4 [Bacillus licheniformis WX-02]
Length = 207
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 106/179 (59%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNDSVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+A KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+V EDL + + KTK + + KK L+ +E ++L+ +NL V V+ +
Sbjct: 121 NNLIVLEDLNLDAVKTKEMAAILKGLSIEKKALIVTADA-NETVELSARNLPGVTVVEA 178
>gi|336430425|ref|ZP_08610372.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336018234|gb|EGN47986.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 206
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 93/147 (63%), Gaps = 3/147 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ VF V + + ++H V WQLA ++QGT KT SEVSG G+K
Sbjct: 4 VAVFNMEGKEVGTLDLSDAVFGVEVNEHLVHMAVVWQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++R E KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVQENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTK 247
+V ++L+ KTK N+ M+N K
Sbjct: 124 IVVDELKFDEIKTK---NFKQVMDNLK 147
>gi|259416401|ref|ZP_05740321.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B]
gi|259347840|gb|EEW59617.1| ribosomal protein, L4/L1 family [Silicibacter sp. TrichCH4B]
Length = 205
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HR+VRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELSEDLFGLEPRADILHRMVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ E
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAEAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++E A +N+ +++LPS+
Sbjct: 133 KTAALAKQVANL-GWKRALVIDGAAVNEGFARAAKNIEGLDILPSM 177
>gi|404492292|ref|YP_006716398.1| 50S ribosomal protein L4 [Pelobacter carbinolicus DSM 2380]
gi|109893615|sp|Q3A6P6.1|RL4_PELCD RecName: Full=50S ribosomal protein L4
gi|77544399|gb|ABA87961.1| ribosomal protein L4 [Pelobacter carbinolicus DSM 2380]
Length = 206
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 103/161 (63%), Gaps = 2/161 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ +VF+ +++ +IH +VR+QLA R+QGT + K S V+G GKKP+RQKGTG AR GT+
Sbjct: 19 LSDEVFNAEVKEYLIHDMVRYQLAARRQGTSAAKNRSAVAGGGKKPYRQKGTGNARQGTI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P F GG GP PR + KLN+KV++ L+ ALSAR E ++ V D ++ TK
Sbjct: 79 RAPHFVGGGAAFGPSPRDFSFKLNRKVKKAALRSALSARFKEERVAVLNDFQLEKIGTKA 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V N+ E + +++ G + L+L+ +NL +V VL +
Sbjct: 139 VVEVLNRFELSNVLVVV--GEDNRNLELSARNLPHVKVLKA 177
>gi|307946287|ref|ZP_07661622.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4]
gi|307769951|gb|EFO29177.1| ribosomal protein, L4/L1 family [Roseibium sp. TrichSKD4]
Length = 206
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/164 (47%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ ++F + R D+IHRVVRWQLAKRQ GTH T SEV+GT KK RQKG+G AR
Sbjct: 14 GSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKTLQRSEVTGTTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG + PQFRGG GP R H+ L KKVR LGLK LSA+A L+V ED +
Sbjct: 74 HGNRKAPQFRGGGKAFGPIVRDHSHDLPKKVRVLGLKHVLSAKAKADSLIVVEDAKAAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
KTK + + T L+ DG + LA++N+ +V+VLP
Sbjct: 134 KTKALKEQLAKAGLT-SALIIDGAEVDANFALASRNIPHVDVLP 176
>gi|326436109|gb|EGD81679.1| hypothetical protein PTSG_02393 [Salpingoeca sp. ATCC 50818]
Length = 243
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 12/164 (7%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L VF +RKDI+ RVV +Q A + GT TKT SEV G GKKPW+QKGTGRAR
Sbjct: 38 GMMELDPTVFGEDLRKDILQRVVVFQRASWRAGTAKTKTRSEVRGGGKKPWQQKGTGRAR 97
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
++R P FRGG T+HGP P+ +IKL KKV+R+G+++ALSA+ A+ LL+ + L +PS
Sbjct: 98 ASSIRSPLFRGGGTVHGPTPKDWSIKLPKKVQRMGVRVALSAKLAQNDLLIVDSLNLPS- 156
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ E+ + L + + L A + L V V+P
Sbjct: 157 ---------SNEEDLLEALFSN--SLPPNLSAAAEGLDDVTVMP 189
>gi|154483186|ref|ZP_02025634.1| hypothetical protein EUBVEN_00887 [Eubacterium ventriosum ATCC
27560]
gi|149735994|gb|EDM51880.1| 50S ribosomal protein L4 [Eubacterium ventriosum ATCC 27560]
Length = 206
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L+ VF V + + ++H+ V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVLNMEGSEVGTIELSDAVFGVEVNEHLVHQAVLSQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R+ LK AL++R EGKL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKMNKKEKRIALKSALTSRVNEGKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V ++L+ + KTK + NTKK L+
Sbjct: 124 IVVDELKFEAPKTKEFAKVMANL-NTKKALVV 154
>gi|260891593|ref|ZP_05902856.1| hypothetical protein GCWU000323_02808 [Leptotrichia hofstadii
F0254]
gi|260858701|gb|EEX73201.1| ribosomal protein L4/L1 family protein [Leptotrichia hofstadii
F0254]
Length = 214
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+PV N + D G + + DVF + K ++H V+ +LA+ +QG+ STKT +EV G
Sbjct: 1 MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+ R P GG +HGPKPR++A K+NKKVR+L LK AL+ + E
Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKINE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNY 239
G ++V +D + + KTK +N+
Sbjct: 121 GNVIVLDDFTLETPKTKTFINF 142
>gi|168334351|ref|ZP_02692538.1| ribosomal protein L4/L1e [Epulopiscium sp. 'N.t. morphotype B']
Length = 207
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 115/195 (58%), Gaps = 8/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L +F V I++ ++H+ V LA ++QGT TKT +EV G G+K
Sbjct: 4 VSVLNMEGKQVGEVSLDDGIFGVEIKEHLVHQAVVSYLANQRQGTQCTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKG GRAR G++R PQ+ GG + PKPR ++ K+N+K R+ LK AL++R E K+
Sbjct: 64 PWRQKGGGRARQGSIRSPQWTGGGVVFAPKPRDYSFKVNRKERQQALKCALTSRVQEKKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V ++L++ KTK +V + + K +++ +G C +K+A N+ V++
Sbjct: 124 VVLDELKLTEAKTKSMVKVLDALNLKKALVVTEGDCAMN-VKIAAGNIQG-------VKT 175
Query: 281 TTQSFLIYYYFLDFD 295
+ + + Y L +D
Sbjct: 176 SAVNNINVYDVLKYD 190
>gi|372278262|ref|ZP_09514298.1| 50S ribosomal protein L4 [Oceanicola sp. S124]
Length = 205
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVVRWQ K Q GTH T SEVS + KK +RQKGTG AR
Sbjct: 14 GSVDLGDEIFGLEPRADILHRVVRWQRNKAQAGTHKVLTKSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA +L KK R+LGLK ALSA+ G L++ + E
Sbjct: 74 HGSRKAPIFRKGGIYKGPTPRSHAHELTKKFRKLGLKHALSAKVKSGSLVIIDTAESEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + + K+ L+ DG ++E A N+ +++LP++
Sbjct: 133 KTAALAKMVSNL-GWKRALIIDGAAVNEGFARAAANIEGLDILPTM 177
>gi|118591183|ref|ZP_01548582.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614]
gi|118436259|gb|EAV42901.1| 50S ribosomal protein L4 [Stappia aggregata IAM 12614]
Length = 206
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ ++F + R D+IHRVVRWQLAKRQ GTH SEVSGT KK RQKG+G AR
Sbjct: 14 GSITVSDEIFGLEPRTDLIHRVVRWQLAKRQAGTHKALGRSEVSGTTKKFVRQKGSGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG + PQFRGG GP R H+ L KKVR LGLK ALSA+A ++V ED +
Sbjct: 74 HGNKKAPQFRGGGKAFGPIVRDHSHDLPKKVRALGLKHALSAKAMTDSIVVVEDAKAAEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
KTK + +++ T L+ DG + LA++N+ +++VLP
Sbjct: 134 KTKALKAQLSKLGLT-SALIIDGAEVDANFALASRNIPHLDVLP 176
>gi|16801841|ref|NP_472109.1| 50S ribosomal protein L4 [Listeria innocua Clip11262]
gi|16804669|ref|NP_466154.1| 50S ribosomal protein L4 [Listeria monocytogenes EGD-e]
gi|46908803|ref|YP_015192.1| 50S ribosomal protein L4 [Listeria monocytogenes serotype 4b str.
F2365]
gi|217966170|ref|YP_002351848.1| 50S ribosomal protein L4 [Listeria monocytogenes HCC23]
gi|226225176|ref|YP_002759283.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254825008|ref|ZP_05230009.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194]
gi|254829080|ref|ZP_05233767.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165]
gi|254854163|ref|ZP_05243511.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503]
gi|254912876|ref|ZP_05262888.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818]
gi|254931099|ref|ZP_05264458.1| ribosomal protein L4 [Listeria monocytogenes HPB2262]
gi|254937256|ref|ZP_05268953.1| ribosomal protein L4 [Listeria monocytogenes F6900]
gi|254991853|ref|ZP_05274043.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-064]
gi|255017640|ref|ZP_05289766.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL F2-515]
gi|255022701|ref|ZP_05294687.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-208]
gi|255027145|ref|ZP_05299131.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J2-003]
gi|255029694|ref|ZP_05301645.1| 50S ribosomal protein L4 [Listeria monocytogenes LO28]
gi|255519641|ref|ZP_05386878.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-175]
gi|284800483|ref|YP_003412348.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578]
gi|284993669|ref|YP_003415437.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923]
gi|290891816|ref|ZP_06554813.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071]
gi|300763618|ref|ZP_07073616.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017]
gi|347549932|ref|YP_004856260.1| putative 50S ribosomal protein L4 [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|386009410|ref|YP_005927688.1| rplD [Listeria monocytogenes L99]
gi|386028030|ref|YP_005948806.1| 50S ribosomal protein L4 [Listeria monocytogenes M7]
gi|386044939|ref|YP_005963744.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes 10403S]
gi|386048362|ref|YP_005966694.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes J0161]
gi|386051603|ref|YP_005969594.1| 50S ribosomal protein L4/L1 family [Listeria monocytogenes FSL
R2-561]
gi|386054820|ref|YP_005972378.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes Finland 1998]
gi|386733316|ref|YP_006206812.1| 50S ribosomal protein L4 [Listeria monocytogenes 07PF0776]
gi|404282197|ref|YP_006683095.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2755]
gi|404285127|ref|YP_006686024.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2372]
gi|404288011|ref|YP_006694597.1| 50S ribosomal protein L4 [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|404409011|ref|YP_006691726.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2376]
gi|404411881|ref|YP_006697469.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC5850]
gi|404414707|ref|YP_006700294.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC7179]
gi|405750976|ref|YP_006674442.1| 50S ribosomal protein L4 [Listeria monocytogenes ATCC 19117]
gi|405753838|ref|YP_006677303.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2378]
gi|405756751|ref|YP_006680215.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2540]
gi|405759684|ref|YP_006688960.1| 50S ribosomal protein L4 [Listeria monocytogenes SLCC2479]
gi|406705366|ref|YP_006755720.1| ribosomal protein L4 [Listeria monocytogenes L312]
gi|417318611|ref|ZP_12105186.1| 50S ribosomal protein L4 [Listeria monocytogenes J1-220]
gi|422810667|ref|ZP_16859078.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-208]
gi|423101346|ref|ZP_17089050.1| 50S ribosomal protein L4 [Listeria innocua ATCC 33091]
gi|424715441|ref|YP_007016156.1| 50S ribosomal protein L4 [Listeria monocytogenes serotype 4b str.
LL195]
gi|424824381|ref|ZP_18249394.1| 50S ribosomal protein L4 [Listeria monocytogenes str. Scott A]
gi|46577145|sp|P61054.1|RL4_LISIN RecName: Full=50S ribosomal protein L4
gi|46577146|sp|P61055.1|RL4_LISMO RecName: Full=50S ribosomal protein L4
gi|67461151|sp|Q71WE7.1|RL4_LISMF RecName: Full=50S ribosomal protein L4
gi|254803741|sp|B8DB09.1|RL4_LISMH RecName: Full=50S ribosomal protein L4
gi|259491564|sp|C1KZH9.1|RL4_LISMC RecName: Full=50S ribosomal protein L4
gi|16412119|emb|CAD00709.1| ribosomal protein L4 [Listeria monocytogenes EGD-e]
gi|16415316|emb|CAC98006.1| ribosomal protein L4 [Listeria innocua Clip11262]
gi|46882076|gb|AAT05369.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str.
F2365]
gi|217335440|gb|ACK41234.1| ribosomal protein L4/L1 family [Listeria monocytogenes HCC23]
gi|225877638|emb|CAS06352.1| ribosomal protein L4 [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|258601490|gb|EEW14815.1| ribosomal protein L4 [Listeria monocytogenes FSL N3-165]
gi|258607555|gb|EEW20163.1| ribosomal protein L4 [Listeria monocytogenes FSL R2-503]
gi|258609862|gb|EEW22470.1| ribosomal protein L4 [Listeria monocytogenes F6900]
gi|284056045|gb|ADB66986.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5578]
gi|284059136|gb|ADB70075.1| 50S ribosomal protein L4 [Listeria monocytogenes 08-5923]
gi|290558410|gb|EFD91927.1| ribosomal protein L4 [Listeria monocytogenes FSL J2-071]
gi|293582646|gb|EFF94678.1| ribosomal protein L4 [Listeria monocytogenes HPB2262]
gi|293590875|gb|EFF99209.1| 50S ribosomal protein L4 [Listeria monocytogenes J2818]
gi|293594249|gb|EFG02010.1| ribosomal protein L4 [Listeria monocytogenes FSL J1-194]
gi|300515895|gb|EFK42944.1| hypothetical protein LMHG_10847 [Listeria monocytogenes FSL N1-017]
gi|307572220|emb|CAR85399.1| rplD [Listeria monocytogenes L99]
gi|328469804|gb|EGF40721.1| 50S ribosomal protein L4 [Listeria monocytogenes J1-220]
gi|332313061|gb|EGJ26156.1| 50S ribosomal protein L4 [Listeria monocytogenes str. Scott A]
gi|336024611|gb|AEH93748.1| ribosomal protein L4 [Listeria monocytogenes M7]
gi|345535353|gb|AEO04794.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes J0161]
gi|345538173|gb|AEO07613.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes 10403S]
gi|346425449|gb|AEO26974.1| ribosomal protein L4/L1 family [Listeria monocytogenes FSL R2-561]
gi|346647471|gb|AEO40096.1| 50S ribosomal protein L4/L1 [Listeria monocytogenes Finland 1998]
gi|346983003|emb|CBW87040.1| Putative ribosomal protein L4 [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|370792132|gb|EHN60023.1| 50S ribosomal protein L4 [Listeria innocua ATCC 33091]
gi|378750872|gb|EHY61463.1| 50S ribosomal protein L4 [Listeria monocytogenes FSL J1-208]
gi|384392074|gb|AFH81144.1| 50S ribosomal protein L4 [Listeria monocytogenes 07PF0776]
gi|404220176|emb|CBY71540.1| ribosomal protein L4 [Listeria monocytogenes ATCC 19117]
gi|404223038|emb|CBY74401.1| ribosomal protein L4 [Listeria monocytogenes SLCC2378]
gi|404225951|emb|CBY77313.1| ribosomal protein L4 [Listeria monocytogenes SLCC2540]
gi|404228832|emb|CBY50237.1| ribosomal protein L4 [Listeria monocytogenes SLCC2755]
gi|404231707|emb|CBY53111.1| ribosomal protein L4 [Listeria monocytogenes SLCC5850]
gi|404234629|emb|CBY56032.1| ribosomal protein L4 [Listeria monocytogenes SLCC2372]
gi|404237566|emb|CBY58968.1| ribosomal protein L4 [Listeria monocytogenes SLCC2479]
gi|404240406|emb|CBY61807.1| ribosomal protein L4 [Listeria monocytogenes SLCC7179]
gi|404243160|emb|CBY64560.1| ribosomal protein L4 [Listeria monocytogenes SLCC2376]
gi|404246940|emb|CBY05165.1| ribosomal protein L4 [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406362396|emb|CBY68669.1| ribosomal protein L4 [Listeria monocytogenes L312]
gi|424014625|emb|CCO65165.1| 50S ribosomal protein L4 [Listeria monocytogenes serotype 4b str.
LL195]
gi|441472424|emb|CCQ22179.1| 50S ribosomal protein L4 [Listeria monocytogenes]
gi|441475567|emb|CCQ25321.1| 50S ribosomal protein L4 [Listeria monocytogenes N53-1]
Length = 207
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 100/167 (59%), Gaps = 1/167 (0%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L VF + + ++ V+ Q A +QGTH K SEV G G+KPWRQKGTGR
Sbjct: 13 NAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS++ E KL+V E L
Sbjct: 73 ARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFD 132
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ KTK + + K L+ G E ++L+ +NL + V+P+
Sbjct: 133 APKTKEFAAFLKNISVDTKALIVVAGE-SENVELSARNLQGITVIPA 178
>gi|197294630|ref|YP_001799171.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense]
gi|226730703|sp|B1VAE7.1|RL4_PHYAS RecName: Full=50S ribosomal protein L4
gi|171853957|emb|CAM11920.1| 50S ribosomal protein L4 [Candidatus Phytoplasma australiense]
Length = 207
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 107/180 (59%), Gaps = 1/180 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L +VFD+ + ++ V+ Q A +QGTH+TKT + VSG GKKPWRQKGTGRARHG++
Sbjct: 19 LKSNVFDIQPHQQALYDVINAQRAAMRQGTHATKTRAFVSGGGKKPWRQKGTGRARHGSI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P +RGG + GP PR++++K+N+KV L LK ALS+ + +L++ +D + +HK+K
Sbjct: 79 RSPLWRGGGVVFGPSPRNYSVKVNQKVSHLALKSALSSHFRQNQLILVDDFNLDTHKSKD 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFD 295
++ T K L+ + L LA++NL YV + + S Q L D
Sbjct: 139 FQKTLQKLNVTSKALIIVTNS-NRNLTLASRNLPYVTLETAAHASVYQILNCKNLILTLD 197
>gi|365851818|ref|ZP_09392233.1| 50S ribosomal protein L4 [Lactobacillus parafarraginis F0439]
gi|363715759|gb|EHL99182.1| 50S ribosomal protein L4 [Lactobacillus parafarraginis F0439]
Length = 207
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 104/176 (59%), Gaps = 8/176 (4%)
Query: 106 FFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
F +D G + L +F + +++ V Q A R+QGTHS K S V G GKKPW
Sbjct: 6 LFKQDGSQNGTVSLNDSIFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGGGKKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R PQ+RGG + GP PRS+A L KKV RL LK LS + ++GK +V
Sbjct: 66 RQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVSDGKFVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ LE + KTK +++ + K V+L DG +EK L+ +NL V V+ +
Sbjct: 126 VDALEFDAPKTKEFATLLDKLNVSTKTLVVLEDG---NEKASLSARNLENVKVVSA 178
>gi|162446958|ref|YP_001620090.1| 50S ribosomal protein L4 [Acholeplasma laidlawii PG-8A]
gi|189029489|sp|A9NED4.1|RL4_ACHLI RecName: Full=50S ribosomal protein L4
gi|161985065|gb|ABX80714.1| large subunit ribosomal protein L4 [Acholeplasma laidlawii PG-8A]
Length = 207
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 115/198 (58%), Gaps = 13/198 (6%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N FN E + L +F + + +++ VV Q A +QGT TKT +EV G
Sbjct: 1 MPTLNLFNQAGEKISEVALNDAIFGITPNQQVLYDVVNAQRAALRQGTAKTKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+RGG + GP PRS+A+K+N+KV++L LK ALS
Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWRGGGIVFGPIPRSYAVKVNQKVKQLALKSALSYHVLA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L++ +++ V KTK + N ++ + + ++L D + + L LA+ NL +
Sbjct: 121 ENLVLVDNITVAEPKTKLFIEIMNNLKLDDRSIVLVD--SVDKNLLLASNNLP-----GA 173
Query: 277 VVRSTTQSFLIYYYFLDF 294
VVR +Q + Y L F
Sbjct: 174 VVREVSQ--VSVYELLKF 189
>gi|20808659|ref|NP_623830.1| 50S ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4]
gi|46577279|sp|Q8R7V5.1|RL4_THETN RecName: Full=50S ribosomal protein L4
gi|20517293|gb|AAM25434.1| Ribosomal protein L4 [Thermoanaerobacter tengcongensis MB4]
Length = 206
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 112/192 (58%), Gaps = 7/192 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N E G + L VF VP+ ++H+ V LA ++QGTHSTKT EV G G+K
Sbjct: 4 VPVYNVKGEQVGEIELKDSVFGVPVNVAVMHQAVVNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + GPKPR ++ KL KKV+RL LK ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLH-----YVNVLP 275
+V ++ ++ KTK + +++ G + ++L+ +N+ Y N+L
Sbjct: 124 IVLDEFKLEQPKTKKVAELLKNFNAKSALIVVPQG--EKNVELSARNMPNAKALYANLLN 181
Query: 276 SVVRSTTQSFLI 287
+ + F+I
Sbjct: 182 TYDVLKYEKFII 193
>gi|260438215|ref|ZP_05792031.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM
2876]
gi|292809407|gb|EFF68612.1| ribosomal protein L4/L1 family protein [Butyrivibrio crossotus DSM
2876]
Length = 206
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 108/188 (57%), Gaps = 8/188 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V + ++H+ V QLA ++QGT S KT SEVSG G+K
Sbjct: 4 VSVYNIEGKVVGDMELNDAVFGVEVNTHLVHQAVVLQLANKRQGTQSAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + PKPR ++ K+NKK + L LK L+ + AE K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGIVFAPKPRDYSFKMNKKEKNLALKSVLTTKVAENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V + L KTK +VN +E K +++ D ++ + L+++N +P V +
Sbjct: 124 IVVDGLSFDEIKTKNMVNVLKNLEVKKALVVTDDD--NKNVTLSSRN------IPGVKTA 175
Query: 281 TTQSFLIY 288
T + +Y
Sbjct: 176 FTNTINVY 183
>gi|84503641|ref|ZP_01001679.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597]
gi|84387938|gb|EAQ00990.1| 50S ribosomal protein L4 [Oceanicola batsensis HTCC2597]
Length = 205
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 99/179 (55%), Gaps = 2/179 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V G + L ++F + R DI+HRVVRWQ QQGTH KT SE S +
Sbjct: 1 MKLDVIKLDGSSAGSVDLGDEIFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FR G GP PRSH L KK R+LGLK ALSA+ EG
Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPVPRSHGHDLPKKFRKLGLKHALSAKVKEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ + E KT + + K+ L+ DG ++E A N+ ++VLPSV
Sbjct: 121 SLVIIDAAESEG-KTNALAKQVKAL-GWKRALIIDGAAVNEGFAKAAANIDGLDVLPSV 177
>gi|299470351|emb|CBN78400.1| 50S ribosomal protein L4P [Ectocarpus siliculosus]
Length = 307
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 95/161 (59%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
LA VF VP+R+D++H VVRWQLA+R++G TK I E+SG+G+K QKG G AR G
Sbjct: 116 LAPSVFGVPVRRDVVHEVVRWQLARRRKGNGQTKRIGEISGSGRKVRPQKGGGVARAGHS 175
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P +RGG HGP+ R + KLNKK RLGL++ALSAR EG+L V +DL+ KT
Sbjct: 176 RPPHWRGGAKAHGPRRRDFSFKLNKKFVRLGLRVALSARLREGQLKVVDDLKSDGFKTSA 235
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++ V GG + + N+ VLP+
Sbjct: 236 MIKTIKARGIDGPVTFVVGGDPQVEFMRSVSNIMGAKVLPA 276
>gi|289579144|ref|YP_003477771.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9]
gi|297545328|ref|YP_003677630.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|289528857|gb|ADD03209.1| ribosomal protein L4/L1e [Thermoanaerobacter italicus Ab9]
gi|296843103|gb|ADH61619.1| ribosomal protein L4/L1e [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 206
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 9/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L VF VP+ ++H+ V LA ++QGTHSTKT EV G G+K
Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHQAVLNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + GPKPR ++ KL KKV+RL LK ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGVVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V ++ ++ KTK +V +++ G + ++L+T+N+ V L +
Sbjct: 124 IVLDEFKLDQPKTKKVVELLKNFNVDSALIVVPEG--EKNVELSTRNIPGVKTLYA---- 177
Query: 281 TTQSFLIYYYFLDFD 295
++L Y L +D
Sbjct: 178 ---NYLNTYDVLKYD 189
>gi|237786394|ref|YP_002907099.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385]
gi|259491550|sp|C4LL51.1|RL4_CORK4 RecName: Full=50S ribosomal protein L4
gi|237759306|gb|ACR18556.1| 50S ribosomal protein L4 [Corynebacterium kroppenstedtii DSM 44385]
Length = 219
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 6/182 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+L + V G + L VFDV + ++H+VV QLA R+QGTH+TKT +V G
Sbjct: 3 NLTLDVHTADGSTNGTVDLPSSVFDVEVSTPLLHQVVTAQLAARRQGTHATKTRGQVRGG 62
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G++R PQF GG T+HGP+PR + + KK++ L+ ALS RA
Sbjct: 63 GRKPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYDQRTPKKMKAAALRGALSDRARH 122
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V EDL + PS TK + ++ + K VL+ G +K A +NL V++L
Sbjct: 123 DRIHVVEDLVPGQTPS--TKAARTFIGRLTDRKSVLVVLGREDVNSIKSA-RNLPNVHIL 179
Query: 275 PS 276
PS
Sbjct: 180 PS 181
>gi|389866517|ref|YP_006368758.1| 50S ribosomal protein L4 [Modestobacter marinus]
gi|388488721|emb|CCH90299.1| 50S ribosomal protein L4 [Modestobacter marinus]
Length = 266
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 5/158 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D +PV N E G + L G++FD ++H+VV QLA +QGTHSTKT ++VSGT
Sbjct: 15 DREVPVRNAAGESTGSVTLPGELFDANANVSLMHQVVVAQLAAARQGTHSTKTRAQVSGT 74
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KP+RQKGTGRAR G+LR PQF GG HGP PR++ K KK++ L+ ALS RA E
Sbjct: 75 GAKPYRQKGTGRARQGSLRAPQFSGGGVSHGPVPRNYDQKTPKKMKAAALRGALSDRARE 134
Query: 218 GKLLV---FEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
++ V F + + PS TK + + + K+VL+
Sbjct: 135 DRVHVVSAFVEGDAPS--TKAAIKVLDAVTAAKRVLVV 170
>gi|149184312|ref|ZP_01862630.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21]
gi|148831632|gb|EDL50065.1| 50S ribosomal protein L4 [Erythrobacter sp. SD-21]
Length = 207
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 106/179 (59%), Gaps = 1/179 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L DVF V R DI+HRVV WQL R+ T+ S+V+ TG
Sbjct: 1 MKVKVQKIDGKASGDIELNDDVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK RQKG G ARHG P F GG HG + R LNKK+R LGLK+ALS++A +G
Sbjct: 61 KKFGRQKGGGTARHGDRGAPIFIGGGKAHGARKRDFEQSLNKKIRALGLKMALSSKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + LE+ KTK + ++++ + KVL+ DG +++ K A NL VNVLP++
Sbjct: 121 -LVVVDSLELKDAKTKALKGHFDKNGWSGKVLIIDGESVNDGFKKAAGNLPGVNVLPAM 178
>gi|255262953|ref|ZP_05342295.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62]
gi|255105288|gb|EET47962.1| ribosomal protein, L4/L1 family [Thalassiobium sp. R2A62]
Length = 206
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 96/158 (60%), Gaps = 1/158 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH KT SEV + KK +RQKGTG ARHG P
Sbjct: 22 IFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FRGG GP RSH +L KK R+LGL+ ALSA+A G+L++ + ++ KT +
Sbjct: 82 FRGGGVYKGPTVRSHGHELTKKFRKLGLRHALSAKATAGELVIIDVADLKDAKTSALAKQ 141
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ K+ L+ DG ++E +A +N+ V++LPS+
Sbjct: 142 VKDL-GWKRALIIDGAEVNENFAVAARNIDTVDILPSM 178
>gi|289523368|ref|ZP_06440222.1| ribosomal protein L4/L1 family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503060|gb|EFD24224.1| ribosomal protein L4/L1 family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 208
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 7/177 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + LA DVF I +H+VV LA ++QGTHSTKT EV G G+K
Sbjct: 4 VDVIGIDGQKVGEVALADDVFAARIHVPAMHQVVVAYLAAQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQK TGRARHG++R P + G +HGPKPRS+ K+NKKV++L +K ALS + E KL
Sbjct: 64 PWRQKHTGRARHGSIRSPLWIKGGVVHGPKPRSYDQKVNKKVKQLAIKSALSLKVKENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK---LATQNLHYVNVL 274
++ E +E S KTK + + + K L+ IHE L +A +N+ VL
Sbjct: 124 ILVEGIETMSPKTKDMCAFLANAQAQAKPLI----VIHESLPSIYMAARNIPGTRVL 176
>gi|158317790|ref|YP_001510298.1| 50S ribosomal protein L4 [Frankia sp. EAN1pec]
gi|158113195|gb|ABW15392.1| ribosomal protein L4/L1e [Frankia sp. EAN1pec]
Length = 247
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 96/158 (60%), Gaps = 5/158 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D +PV D G + L G VFDVP+ +IH+VV QLA +QGTHSTKT EV G
Sbjct: 20 DRTVPVHAPAGGDAGSVELPGAVFDVPVNVPLIHQVVVAQLAAARQGTHSTKTRGEVRGG 79
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+LR PQF GG +HGP PR++ + KK++ L+ ALS RA
Sbjct: 80 GRKPYRQKGTGRARQGSLRAPQFTGGGIVHGPTPRNYDQRTPKKMKAAALRGALSDRARN 139
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLC 252
+L V L + PS TK V + + ++VL+
Sbjct: 140 NRLHVVSSLVAGDTPS--TKSAVAALTSLVDARRVLVV 175
>gi|387928109|ref|ZP_10130787.1| 50S ribosomal protein L4 [Bacillus methanolicus PB1]
gi|387587695|gb|EIJ80017.1| 50S ribosomal protein L4 [Bacillus methanolicus PB1]
Length = 207
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 109/180 (60%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + K ++ V Q A +QGTH TK SEVSG
Sbjct: 1 MPKVALFNQNGSQVGEIELNDAVFGIEPNKHVLFEAVVMQRASLRQGTHKTKIRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LV E+L + KTK F N NTK +++ + E + L+ +N+ V V+ +
Sbjct: 121 ENILVLENLAFETPKTKDFKGVLKNLSVNTKALVVT--ADLDENVALSARNIPGVTVVAA 178
>gi|403388277|ref|ZP_10930334.1| 50S ribosomal protein L4 [Clostridium sp. JC122]
Length = 206
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L +F I K+ +H+VV QLA ++QGT S KT +EV G
Sbjct: 1 MPTIKVFNKEGKEVGDIQLNESIFGAEISKESMHQVVLAQLANKRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR +K AL+++ AE
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRVSIPKSMRRTAMKSALTSKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+++V E LE + KTK ++N N E K +++ +E + + +N+ V VLP
Sbjct: 121 NEMIVIESLEFEAPKTKEMINVLNAFEAKKTLIVVAES--NENVYKSARNIPGVAVLP 176
>gi|121534760|ref|ZP_01666581.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1]
gi|121306780|gb|EAX47701.1| ribosomal protein L4/L1e [Thermosinus carboxydivorans Nor1]
Length = 208
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 92/144 (63%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L+ VF V + K ++H+ V QLA ++ GTH+TKT V G GKK
Sbjct: 4 VAVYDITGAQTGEIELSDSVFGVEVNKAVLHQAVVMQLANQRLGTHATKTRGMVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P + GG T+ GP+PRS+AI + +K RRL LK ALSA+ G++
Sbjct: 64 PWRQKGTGRARAGSIRSPLWVGGGTVFGPQPRSYAISMPRKARRLALKSALSAKVQSGEM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME 244
+V ED KTK +V + ++
Sbjct: 124 VVLEDFTFAEPKTKNVVKMLDNLK 147
>gi|78043328|ref|YP_361117.1| 50S ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901]
gi|109893583|sp|Q3A9R7.1|RL4_CARHZ RecName: Full=50S ribosomal protein L4
gi|77995443|gb|ABB14342.1| ribosomal protein L4 [Carboxydothermus hydrogenoformans Z-2901]
Length = 206
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 104/174 (59%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N G + L ++F P+ K +++ V LA +++GTH TKT EVSG G+K
Sbjct: 4 VPVYNMEGAQVGEIELKDEIFGAPVNKAVLYEVSLMYLANQRRGTHDTKTRGEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRARHG++R P +R G + GP PR ++ + KKVRR LK ALS + E L
Sbjct: 64 PWRQKGTGRARHGSIRSPLWRKGGIVFGPHPRDYSYSVPKKVRRAALKSALSDKVNENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V + L + KTK ++ N ++ K L+ G E ++ + +N+ V+V+
Sbjct: 124 IVVDSLTFAAPKTKEMIRVLNNLKVNGKTLIVTAGY-DEIVEKSARNIPGVSVM 176
>gi|161485627|ref|YP_064861.2| 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54]
Length = 207
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE + L +F+ +++ I+H VVR Q A ++ GT STKT EV G G K
Sbjct: 4 VSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ P +RGG GPKPR ++ KLN+KVR+ + +ALSAR EG L
Sbjct: 64 PWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V ++ + + KTK + +E +++ D E L + +N+H +LP+
Sbjct: 124 IVLDNFIMDAIKTKEFASTMKTLELANALIVMDDAS--ENLSKSCRNVHGYRILPA 177
>gi|422933529|ref|ZP_16966449.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891570|gb|EGQ80531.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 209
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR GT+R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 ILVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|81642546|sp|Q6AP70.1|RL4_DESPS RecName: Full=50S ribosomal protein L4
gi|50876014|emb|CAG35854.1| probable 50S ribosomal protein L4 [Desulfotalea psychrophila LSv54]
Length = 211
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 104/176 (59%), Gaps = 2/176 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE + L +F+ +++ I+H VVR Q A ++ GT STKT EV G G K
Sbjct: 8 VSVVNTNNEKVDEIELNDAIFNREVKEYILHDVVRMQRAAKRAGTASTKTRVEVRGGGAK 67
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ P +RGG GPKPR ++ KLN+KVR+ + +ALSAR EG L
Sbjct: 68 PWRQKGTGRARAGSRTSPLWRGGGVTFGPKPRDYSFKLNRKVRQQAVSMALSARFQEGNL 127
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V ++ + + KTK + +E +++ D E L + +N+H +LP+
Sbjct: 128 IVLDNFIMDAIKTKEFASTMKTLELANALIVMDDAS--ENLSKSCRNVHGYRILPA 181
>gi|237743900|ref|ZP_04574381.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1]
gi|260495202|ref|ZP_05815330.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33]
gi|289765451|ref|ZP_06524829.1| LSU ribosomal protein L1E [Fusobacterium sp. D11]
gi|336400121|ref|ZP_08580909.1| 50S ribosomal protein L4 [Fusobacterium sp. 21_1A]
gi|423138098|ref|ZP_17125741.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. animalis
F0419]
gi|229432931|gb|EEO43143.1| LSU ribosomal protein L1E [Fusobacterium sp. 7_1]
gi|260197259|gb|EEW94778.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_33]
gi|289717006|gb|EFD81018.1| LSU ribosomal protein L1E [Fusobacterium sp. D11]
gi|336163318|gb|EGN66250.1| 50S ribosomal protein L4 [Fusobacterium sp. 21_1A]
gi|371958660|gb|EHO76369.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. animalis
F0419]
Length = 209
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR GT+R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 ILVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|85703988|ref|ZP_01035091.1| 50S ribosomal protein L4 [Roseovarius sp. 217]
gi|85671308|gb|EAQ26166.1| 50S ribosomal protein L4 [Roseovarius sp. 217]
Length = 205
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ K Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSHA L KKVR LGLK ALSA+A G+L++ D+ +
Sbjct: 74 HGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAGELVII-DVASSNG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++ + A N+ ++VLPS+
Sbjct: 133 KTGELAKQVKNL-GWKRALVIDGAQVNAEFARAAANIEGLDVLPSM 177
>gi|299143193|ref|ZP_07036273.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517678|gb|EFI41417.1| ribosomal protein L4/L1 family protein [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 207
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 111/188 (59%), Gaps = 7/188 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + L ++FD+ I + ++ VV+ LA R+QGT S KT +EV G G+K
Sbjct: 4 IQVVNMEGAAVSEIELNENIFDIDINEHAVYLVVKNILANRRQGTKSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+RGG + PKPR + KKVRRL L+ AL+++ E ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWRGGGIVFAPKPRDFSYTTPKKVRRLALRSALTSKVRENEM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V +D+++ KTK V ++ K L+ G EK+K+A +N +P+V +
Sbjct: 124 IVVDDIKMNDAKTKNFVQMLKAIKADPKALVVVAGY-DEKVKIAARN------IPNVKTT 176
Query: 281 TTQSFLIY 288
++ +Y
Sbjct: 177 MAENINVY 184
>gi|149203512|ref|ZP_01880482.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035]
gi|149143345|gb|EDM31384.1| 50S ribosomal protein L4 [Roseovarius sp. TM1035]
Length = 205
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ K Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GSVDLGEDIFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSHA L KKVR LGLK ALSA+A G L++ ++ +
Sbjct: 74 HGDKNAPIFRHGGIYKGPTPRSHAHDLPKKVRALGLKHALSAKAKAGALVILDEAS-SNG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+VL+ DG ++ + A N+ ++VLPS+
Sbjct: 133 KTGELAKQVKNL-GWKRVLVIDGAQVNAEFARAAANIEGLDVLPSM 177
>gi|260664854|ref|ZP_05865705.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US]
gi|297205088|ref|ZP_06922484.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
JV-V16]
gi|260561337|gb|EEX27310.1| ribosomal protein L4/L1 [Lactobacillus jensenii SJ-7A-US]
gi|297149666|gb|EFH29963.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
JV-V16]
Length = 205
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 3/167 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L +VF + ++++ V Q A +QGTH+TK S V G GKKPWRQKGTG
Sbjct: 12 KDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A L +KVRRL +K LS + + L+V + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQDNNLIVLDQLSL 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ KTK + KVL+ +E ++L+ +NL V V+P
Sbjct: 132 DAPKTKEFKAVLGNLNVDSKVLVV---SDNENVQLSARNLENVKVVP 175
>gi|159477929|ref|XP_001697061.1| mitochondrial ribosomal protein L4 [Chlamydomonas reinhardtii]
gi|158274973|gb|EDP00753.1| mitochondrial ribosomal protein L4 [Chlamydomonas reinhardtii]
Length = 124
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 80/115 (69%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L G F+VP+R DI+HRVVR+ AK QQGTH K+ +EVSG GKKPW QK TGRAR
Sbjct: 10 GLAPLPGAAFNVPVRIDILHRVVRYWRAKWQQGTHKAKSRAEVSGGGKKPWNQKKTGRAR 69
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
G++R P ++GG H P+PRSHA L + R LG++ ALSA+ EG+ V +DL
Sbjct: 70 QGSIRSPLWKGGGVSHAPRPRSHAHALPRSTRLLGMRCALSAKINEGRFFVVDDL 124
>gi|19704965|ref|NP_602460.1| 50S ribosomal protein L4 [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296329219|ref|ZP_06871720.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|46577280|sp|Q8RIF6.1|RL4_FUSNN RecName: Full=50S ribosomal protein L4
gi|19712867|gb|AAL93759.1| LSU ribosomal protein L1E [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296153575|gb|EFG94392.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 209
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR GT+R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|433461753|ref|ZP_20419356.1| 50S ribosomal protein L4 [Halobacillus sp. BAB-2008]
gi|432189768|gb|ELK46845.1| 50S ribosomal protein L4 [Halobacillus sp. BAB-2008]
Length = 207
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 102/175 (58%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L VF + ++H V Q A +QGTH K SEVSG G+K
Sbjct: 4 VALLNQGGSNVGEIELNDAVFGIEPNTHVLHETVLMQRANLRQGTHKVKGRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ + +KVRRL L+ A S++ E +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYTMPRKVRRLALQSAYSSKVKEENI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V E L + + KTK +VN ++ +K L+ G E + L+ N+ V LP
Sbjct: 124 IVLESLSLEAPKTKEVVNMLKALDVNEKALIVTAGK-DENVTLSANNIPTVKSLP 177
>gi|393719126|ref|ZP_10339053.1| 50S ribosomal protein L4 [Sphingomonas echinoides ATCC 14820]
Length = 212
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 4/181 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +F + + L +VF + R DI+HRVV WQL KR+ T+ ++V+ TGKK
Sbjct: 3 VKVQSFADTAGADIELNDEVFGLDPRADILHRVVTWQLEKRRATASGTRERADVARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGLK+ALS+ A G L
Sbjct: 63 FGRQKGGGTARHGDRRAPIFVGGGKAHGQRTRDFNPGLNKKVRALGLKMALSSHAQAGTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENT----KKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V + L V KTK ++ + ++ K L+ DG + LA NLH +NV+P+
Sbjct: 123 VVMDSLTVAESKTKTLIADWAKLGPDGGWGKTALVIDGAAVETSFALAAGNLHTINVMPA 182
Query: 277 V 277
Sbjct: 183 A 183
>gi|398383733|ref|ZP_10541796.1| 50S ribosomal protein L4, bacterial/organelle [Sphingobium sp.
AP49]
gi|397724178|gb|EJK84653.1| 50S ribosomal protein L4, bacterial/organelle [Sphingobium sp.
AP49]
Length = 207
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF + R DI+HRVV WQL KR+ T+ S+V+ TGKK
Sbjct: 3 VNVQTLDAQAAGELELNDAVFGLEPRADILHRVVTWQLEKRRGTARGTRERSDVARTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
RQKG G ARHG R P F GG HG + R LNKKVR LGLK+ALS++ +G L
Sbjct: 63 FGRQKGGGTARHGDRRAPVFIGGGKAHGARVRDFNPSLNKKVRALGLKMALSSKVKDGSL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ + L+V KTK +V ++ N KVL DG ++ A+ N+ VN+LP+V
Sbjct: 123 FIIDSLDVAEGKTKALVANLAKL-NLNKVLFIDGDAVNVSFAKASANIIGVNLLPAV 178
>gi|336419086|ref|ZP_08599353.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 11_3_2]
gi|336164091|gb|EGN67003.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 11_3_2]
Length = 209
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVNDAVFGIKPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR GT+R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGTIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 ILVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|328875550|gb|EGG23914.1| hypothetical protein DFA_06052 [Dictyostelium fasciculatum]
Length = 333
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 83/126 (65%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF VP+R D++HR++RWQ AK +QGTH + + +V T KKP QKG GRAR
Sbjct: 121 GEINLLNSVFKVPLRIDLLHRMIRWQRAKARQGTHYAQNMGDVERTNKKPMAQKGNGRAR 180
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT Q GG PKPR H+ L KKVR+ L +ALS + A+GKL++ +DL+V +H
Sbjct: 181 QGTNHAIQMVGGARAFPPKPRDHSHSLQKKVRKQALCVALSTKLAQGKLIIVDDLQVETH 240
Query: 232 KTKFIV 237
KTK +V
Sbjct: 241 KTKELV 246
>gi|257125037|ref|YP_003163151.1| 50S ribosomal protein L4 [Leptotrichia buccalis C-1013-b]
gi|257048976|gb|ACV38160.1| ribosomal protein L4/L1e [Leptotrichia buccalis C-1013-b]
Length = 214
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 5/138 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+PV N + D G + + DVF + K ++H V+ +LA+ +QG+ STKT +EV G
Sbjct: 1 MPVLNIYKLDGSQAGTIEVNNDVFGIEPNKHVMHEVLVAELAEARQGSASTKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+ R P GG +HGPKPR++A K+NKKVR+L LK AL+ + +E
Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRNYAKKVNKKVRKLALKSALATKISE 120
Query: 218 GKLLVFED--LEVPSHKT 233
G ++V +D LE+P KT
Sbjct: 121 GNVIVLDDFALEIPKTKT 138
>gi|218885188|ref|YP_002434509.1| 50S ribosomal protein L4 [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|226730654|sp|B8DN97.1|RL4_DESVM RecName: Full=50S ribosomal protein L4
gi|218756142|gb|ACL07041.1| ribosomal protein L4/L1e [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 206
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 99/153 (64%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V + ++ G + LA +VF+V ++ +I++ VVR A + GTH+TKT + VSG G
Sbjct: 3 VVKVYDQNKKEAGELTLAPEVFEVEVKPEILNLVVRAHRAGLRSGTHATKTRAFVSGGGA 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G+ R P +RGG + GP+PR + K+NKKVR+L LK+ALS+R A
Sbjct: 63 KPWRQKGTGRARSGSNRSPIWRGGAVIFGPQPREYGFKVNKKVRQLALKMALSSRLAGEN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
L+V + +E+P KTK + K +++
Sbjct: 123 LMVVKGIELPEIKTKLFAKVAGALGLEKALVIT 155
>gi|288554726|ref|YP_003426661.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4]
gi|288545886|gb|ADC49769.1| 50S ribosomal protein L4 [Bacillus pseudofirmus OF4]
Length = 207
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 105/171 (61%), Gaps = 4/171 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + L+ +F + + ++H V Q A +QGTH TK SEV G
Sbjct: 1 MPKVAVFNQAGSQVGDIELSDSIFGIEPNQSVLHDAVVMQQASLRQGTHKTKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL +K ALS++
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKLKA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+++V ++L++ + KTK + N N + K L+ +E + L+T+NL
Sbjct: 121 AEIVVLDNLQLDAPKTKDMANVLNGLSVDSKALVVTADY-NETVALSTRNL 170
>gi|54022701|ref|YP_116943.1| 50S ribosomal protein L4 [Nocardia farcinica IFM 10152]
gi|81603036|sp|Q5Z1W2.1|RL4_NOCFA RecName: Full=50S ribosomal protein L4
gi|54014209|dbj|BAD55579.1| putative ribosomal protein L4 [Nocardia farcinica IFM 10152]
Length = 230
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 5/160 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+LV+PV + G + L ++FDV ++H+VV QLA +QGTH+TKT EVSG
Sbjct: 15 NLVLPVKEAGGKSNGTVELPAEIFDVTANIALMHQVVTAQLAAARQGTHATKTRGEVSGG 74
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK+ R L ALS RA
Sbjct: 75 GKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIRAALHGALSDRARN 134
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDG 254
++ V +L + PS TK N+ ++ + KK L+ G
Sbjct: 135 DRIHVVSELVAGQTPS--TKTAKNFLAELSDRKKFLVVVG 172
>gi|421526107|ref|ZP_15972716.1| 50S ribosomal protein L4 [Fusobacterium nucleatum ChDC F128]
gi|402257866|gb|EJU08339.1| 50S ribosomal protein L4 [Fusobacterium nucleatum ChDC F128]
Length = 209
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/176 (42%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ + N E G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNIYNLAGEQTGTVEVKDTVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L LK ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALKSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDVIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|339442853|ref|YP_004708858.1| 50S ribosomal protein L4 [Clostridium sp. SY8519]
gi|338902254|dbj|BAK47756.1| ribosomal protein L4 [Clostridium sp. SY8519]
Length = 206
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 96/154 (62%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E+ G + L VF V + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VSVYNMAGEEVGTLDLNDAVFGVEPNEHLVHAAVTAQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PRS+ +K+NKK +R LK LS++ A+ K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRSYDLKVNKKEKRAALKSVLSSKVADSKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG 254
+V +DL++ + KTK VN N ++ + +++ +G
Sbjct: 124 IVLDDLKLDAIKTKDFVNVLNNLKVSDALVILNG 157
>gi|402820854|ref|ZP_10870417.1| rplD protein [alpha proteobacterium IMCC14465]
gi|402510357|gb|EJW20623.1| rplD protein [alpha proteobacterium IMCC14465]
Length = 206
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 98/173 (56%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
VT G + L VF + +R D++HR+V +QLA RQ GTH TK SE+ GT KK
Sbjct: 5 VTTLEATKSGSVDLNDSVFGLELRADLLHRMVNYQLASRQAGTHKTKNRSEIVGTTKKFG 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKG G ARHG + F GG HGP RSHA KL KKVR L LK ALS++ +L+V
Sbjct: 65 RQKGGGGARHGNRKSNIFIGGGRAHGPVVRSHATKLPKKVRTLALKTALSSKVKAAQLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ E KT + N ++ T L+ DG ++E A +N+ ++VLP
Sbjct: 125 LDKAESKDGKTSVLRNQLTKLGIT-SALIIDGNNVNENFARAARNIEKIDVLP 176
>gi|256852037|ref|ZP_05557424.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN]
gi|260661394|ref|ZP_05862307.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN]
gi|256615449|gb|EEU20639.1| ribosomal protein L4/L1 [Lactobacillus jensenii 27-2-CHN]
gi|260547849|gb|EEX23826.1| ribosomal protein L4/L1 [Lactobacillus jensenii 115-3-CHN]
Length = 205
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%), Gaps = 3/167 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L +VF + ++++ V Q A +QGTH+TK S V G GKKPWRQKGTG
Sbjct: 12 KDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A L +KVRRL +K LS + + L++ + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKVRRLAIKSVLSQKLQDNNLIILDQLSL 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ KTK + KVL+ +E ++L+ +NL V V+P
Sbjct: 132 DAPKTKEFKAVLGNLNVDSKVLVV---SDNENVQLSARNLENVKVVP 175
>gi|159042833|ref|YP_001531627.1| 50S ribosomal protein L4 [Dinoroseobacter shibae DFL 12]
gi|189029501|sp|A8LM49.1|RL4_DINSH RecName: Full=50S ribosomal protein L4
gi|157910593|gb|ABV92026.1| 50S ribosomal protein L4/L1e [Dinoroseobacter shibae DFL 12]
Length = 205
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 99/177 (55%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V E G + L +F + R DI+HRVVRWQ K Q GTH KT SEVS + KK
Sbjct: 3 LDVIKLDGEAAGSVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG P FR G GP PRSHA L KK R+LGLK ALSA+A G+L
Sbjct: 63 IYRQKGTGGARHGARSAPIFRKGGIYKGPTPRSHAHDLPKKFRKLGLKHALSAKAKAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V D+ KT + + K+ L+ DG + A N+ ++VLPS+
Sbjct: 123 VVI-DMATSEGKTATLAKQIKNL-GWKRALVIDGAQVDAGFAKAAANIDTLDVLPSM 177
>gi|345021330|ref|ZP_08784943.1| 50S ribosomal protein L4 [Ornithinibacillus scapharcae TW25]
Length = 207
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 101/177 (57%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G L VF + ++H V Q A +QGTH+ K SEV G
Sbjct: 1 MPKVALFKQDGSQAGEFELNESVFGIEPNTHVLHEAVVMQRASMRQGTHAVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL LK ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLALKSALSSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L+V E++ + + KTK +V + + +K L+ E + + N+ V VL
Sbjct: 121 QNLIVLENIAIDAPKTKEVVKMLSALNVERKALIVTADT-DENVIRSANNIQGVKVL 176
>gi|296282583|ref|ZP_06860581.1| 50S ribosomal protein L4 [Citromicrobium bathyomarinum JL354]
Length = 207
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 1/179 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V G + L VF V R DI+HRVV WQL KR+ T+ S+V+ TG
Sbjct: 1 MKIAVQKIDGGKAGEIELNDAVFGVEPRADILHRVVTWQLEKRRGTARPTRERSDVARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK RQKG+G ARHG P F GG HG + R LNKK+R LGL++ALS++A +G
Sbjct: 61 KKFGRQKGSGGARHGDRGAPIFIGGGKAHGARKRDFDPSLNKKIRSLGLRMALSSKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ + LE+ KTK + ++ + KVL+ DG +++ K+A NL VNV+P+V
Sbjct: 121 -LVIVDSLELKDAKTKALKGHFEKAGFNGKVLVIDGESVNDGFKMAAGNLPGVNVIPAV 178
>gi|399069900|ref|ZP_10749570.1| 50S ribosomal protein L4, bacterial/organelle [Caulobacter sp.
AP07]
gi|398044816|gb|EJL37612.1| 50S ribosomal protein L4, bacterial/organelle [Caulobacter sp.
AP07]
Length = 212
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
IR DI+ RVV WQLAKR+ G H + +EVS TGKK ++QKGTG ARHG+ R QF GG
Sbjct: 28 IRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTGKKMYKQKGTGSARHGSRRAAQFVGGA 87
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP RSHA L KK+R + L+ ALS++A G L+V +++ + KT + +++M
Sbjct: 88 KAHGPVVRSHAFDLPKKIRAMALRHALSSKAKAGSLIVLDNVALTDPKTAALRATFDKM- 146
Query: 245 NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
K L+ G + KLA +N+ ++VLP+
Sbjct: 147 GLKNALVIAGPEVDGNFKLAARNIPNIDVLPNA 179
>gi|430755581|ref|YP_007211142.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|430020101|gb|AGA20707.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 209
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 106/181 (58%), Gaps = 4/181 (2%)
Query: 99 LVIPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
+++P +N++ G + L VF + + ++ + Q A +QGTH K SEV
Sbjct: 1 MIMPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVR 60
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA 215
G G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++
Sbjct: 61 GGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKV 120
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ ++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+
Sbjct: 121 NDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADA-NEAVALSARNIPGVTVVE 179
Query: 276 S 276
+
Sbjct: 180 A 180
>gi|188581376|ref|YP_001924821.1| 50S ribosomal protein L4 [Methylobacterium populi BJ001]
gi|226730691|sp|B1ZLK5.1|RL4_METPB RecName: Full=50S ribosomal protein L4
gi|179344874|gb|ACB80286.1| ribosomal protein L4/L1e [Methylobacterium populi BJ001]
Length = 206
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 102/175 (58%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T G + L +F + R DI+ R+VR+QLAKR+ GTH+ K S+V T KK
Sbjct: 3 LDITTLDGGSAGSLELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP R H+ L KKVR L LK ALS++A L
Sbjct: 63 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSSKAKTSTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +D++V SHKTK ++ + ++ L+ G + E A + + ++VLP
Sbjct: 123 IVVDDIKVDSHKTKAMIERFEKL-GLSSALIIGGSEVDENFGRAARAIPKIDVLP 176
>gi|407978616|ref|ZP_11159445.1| 50S ribosomal protein L4 [Bacillus sp. HYC-10]
gi|407414812|gb|EKF36438.1| 50S ribosomal protein L4 [Bacillus sp. HYC-10]
Length = 207
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + + ++ + Q A +QGTH KT SEV G
Sbjct: 1 MPKVALFNQNGSTNGEIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V EDL + + KTK + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDAVKTKEFAGILKGLSVEKKALIVTADA-NETIALSARNIPGVTVVEA 178
>gi|365128104|ref|ZP_09340420.1| 50S ribosomal protein L4 [Subdoligranulum sp. 4_3_54A2FAA]
gi|363623451|gb|EHL74570.1| 50S ribosomal protein L4 [Subdoligranulum sp. 4_3_54A2FAA]
Length = 207
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 7/173 (4%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ VF + + ++H V LA ++QGT STKT SEVSG G+KPWRQKGTGRAR G+
Sbjct: 19 LSDAVFGITPNEKVMHAAVVNFLANQRQGTQSTKTRSEVSGGGRKPWRQKGTGRARQGST 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ G GPKPR ++ +LNKKV+RL L ALS++A G ++V ++L+ +KTK
Sbjct: 79 RSPQWTHGGVALGPKPRDYSYRLNKKVKRLALLSALSSKAQSGDIIVIDELKAAEYKTKT 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIY 288
+VN + KK L+ + KL + N +P V +T S Y
Sbjct: 139 VVNMLTAIGADKKALIVT-PAVDAKLVKSAAN------IPGVKTATADSINTY 184
>gi|254463733|ref|ZP_05077144.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I]
gi|206684641|gb|EDZ45123.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium Y4I]
Length = 205
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HRVVRWQ QQGTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELSEDLFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP RSH +L KK R+LGL+ ALSA+A G+L++ ED
Sbjct: 74 HGDRNAPIFRKGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAGELVIIEDAAAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++E A++N+ +++LP++
Sbjct: 133 KTAALAKQVKNL-GWKRALIIDGASVNEGFLQASRNIEGLDILPTI 177
>gi|254487620|ref|ZP_05100825.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101]
gi|214044489|gb|EEB85127.1| ribosomal protein, L4/L1 family [Roseobacter sp. GAI101]
Length = 205
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 97/166 (58%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ QQGTH KT SEVS + KK +RQKGTG AR
Sbjct: 14 GSIDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH +L KK R+LGL+ ALS+ A G L++ +D
Sbjct: 74 HGARSAPIFRSGGIYKGPTPRSHGHELTKKFRKLGLRHALSSMAKNGNLVIIDD-ATSDG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++E A +N+ +++LPSV
Sbjct: 133 KTSALAKQVKSL-GWKRALIIDGASVNENFLQAARNIEGLDILPSV 177
>gi|389573511|ref|ZP_10163585.1| ribosomal protein L4/L1 family [Bacillus sp. M 2-6]
gi|388426826|gb|EIL84637.1| ribosomal protein L4/L1 family [Bacillus sp. M 2-6]
Length = 207
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + + ++ + Q A +QGTH KT SEV G
Sbjct: 1 MPKVALFNQNGSTNGEIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V EDL + + KTK + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDAVKTKEFAGILKGLSVEKKALIVTADA-NETVALSARNIPGVTVVEA 178
>gi|89100348|ref|ZP_01173213.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911]
gi|89084969|gb|EAR64105.1| 50S ribosomal protein L4 [Bacillus sp. NRRL B-14911]
Length = 207
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 103/174 (59%), Gaps = 1/174 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L +F + ++ V Q A +QGTH TK SEV+G G+K
Sbjct: 4 VALLNQAGSQVGEIELNETIFGIEPNNHVLFEAVVMQRASLRQGTHKTKIRSEVAGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ AE +
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVAEENI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
LV E+L + + KTK + KK L+ + E + L+ +N+ V V+
Sbjct: 124 LVLENLALETPKTKDFKGVLTGLSVDKKALIVTAD-LDENVALSARNIPGVTVV 176
>gi|157690901|ref|YP_001485363.1| 50S ribosomal protein L4 [Bacillus pumilus SAFR-032]
gi|194017590|ref|ZP_03056201.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061]
gi|166990946|sp|A8F986.1|RL4_BACP2 RecName: Full=50S ribosomal protein L4
gi|157679659|gb|ABV60803.1| ribosomal protein L4 [Bacillus pumilus SAFR-032]
gi|194010862|gb|EDW20433.1| ribosomal protein L4/L1 family [Bacillus pumilus ATCC 7061]
Length = 207
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF + + ++ + Q A +QGTH KT SEV G
Sbjct: 1 MPKVALFNQNGSTNGEIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V EDL + + KTK + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDAVKTKEFAGILKGLSVEKKALIVTADA-NETVALSARNIPGVTVVEA 178
>gi|402813925|ref|ZP_10863519.1| 50S ribosomal protein L4 [Paenibacillus alvei DSM 29]
gi|402507772|gb|EJW18293.1| 50S ribosomal protein L4 [Paenibacillus alvei DSM 29]
Length = 207
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 94/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L+ VF + K ++H V QLA +QGTH K SEVSG G+K
Sbjct: 4 VAVYNMSGAQVGEIELSDSVFGIEPNKHVLHDAVVMQLASMRQGTHKVKNRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+ GG T+ GP PRS+A KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVLAEQI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + + KTK N ++ +K L+
Sbjct: 124 IVIDSLALNTPKTKEFAAVLNNLKVDRKALVV 155
>gi|46205275|ref|ZP_00048760.2| COG0088: Ribosomal protein L4 [Magnetospirillum magnetotacticum
MS-1]
Length = 206
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T G + L +F + R DI+ R+VR+QLAKR+ GTH+ K S+V T KK
Sbjct: 3 LDITTLDGGSAGSVELNEAIFGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTSKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP R H+ L KKVR L LK ALS +A L
Sbjct: 63 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSTKAKASTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +D++V SHKTK ++ + ++ L+ G + E A + + ++VLP
Sbjct: 123 IVVDDIKVDSHKTKAMIERFEKL-GLSSALIIGGSEVDENFGRAARAIPKIDVLP 176
>gi|317575759|ref|NP_001187653.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus]
gi|308323607|gb|ADO28939.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus]
Length = 312
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/247 (34%), Positives = 128/247 (51%), Gaps = 27/247 (10%)
Query: 57 LASRKFSTTILTPDSSEGAFPSDLLLKKTVLTP-------------------DITIGLH- 96
+ +R ST +++ S E A PS+L L ++ D + H
Sbjct: 19 VCTRGISTRLISSLSGESALPSNLRLPANLIGAPRQKAAVPTGSELPVVRRCDADVPAHL 78
Query: 97 ---QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISE 153
Q + + ++ +E G + L DVF VP+R DI+H V WQ ++ K+ +E
Sbjct: 79 APVQTWLHSLGSYESEPLGVVDLHPDVFSVPVRLDILHAVEVWQRNFKRISNAKVKSRAE 138
Query: 154 VSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALS 212
V G G KPW+QKG+GRARHG++R P +RGG HGP+ P S+ L KVR GLKIAL+
Sbjct: 139 VRGGGGKPWKQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVQGLKIALT 198
Query: 213 ARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGG--CIHEKLKLATQNLHY 270
A+ A+ L V + LE+P+ ++ + VL+ D G H L+ AT NL
Sbjct: 199 AKLAQDYLHVIDTLEIPTPDPHYLEELLKHRQWGDSVLIVDVGEEFSHNVLQ-ATANLKT 257
Query: 271 VNVLPSV 277
VN++P++
Sbjct: 258 VNIIPAI 264
>gi|146297284|ref|YP_001181055.1| 50S ribosomal protein L4 [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|166234648|sp|A4XLS9.1|RL4_CALS8 RecName: Full=50S ribosomal protein L4
gi|145410860|gb|ABP67864.1| ribosomal protein L4/L1e [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 208
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 4/176 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I L KKVRRL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V + ++ ++TK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDKWDMNQYRTKEVIRVLKNLGLENEKALIVIPEK--NEYLQKSTKNIPEVKTL 177
>gi|346991251|ref|ZP_08859323.1| 50S ribosomal protein L4 [Ruegeria sp. TW15]
Length = 205
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GNIELDADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GP RSH L KK R+LGL+ ALSA+A G+L+V E+ E
Sbjct: 74 HGDRNAPIFRGGGIYKGPVVRSHGHDLPKKFRKLGLRHALSAKAKAGELVVIENAEAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++E A++N+ +++LPS+
Sbjct: 133 KTAALAKQVANL-GWKRALVIDGATVNEGFLKASKNIEGLDILPSM 177
>gi|452994820|emb|CCQ93484.1| ribosomal protein L4 [Clostridium ultunense Esp]
Length = 207
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 12/197 (6%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L DVF + + + +++ VV+ QLA +QGT S KT +EV G G+K
Sbjct: 4 VNVYNILGEQVGEIELNEDVFGIEVNQHVLYEVVKNQLANSRQGTQSVKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P + GG PKPR + ++ KKV+RL +K ALS++ ++
Sbjct: 64 PWRQKGTGRARQGSIRAPHWVGGGVAFAPKPRDYGYRVPKKVKRLAMKSALSSKVLNNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV--V 278
+V E+L + KTK + ++ +KK L+ + +N++ + ++ V
Sbjct: 124 IVLEELNLEEPKTKEMAKILENIKASKKALIV----------MDKKNINVIKSARNIPNV 173
Query: 279 RSTTQSFLIYYYFLDFD 295
+T + L Y L FD
Sbjct: 174 ETTFVNTLNVYDILKFD 190
>gi|56698635|ref|YP_169012.1| 50S ribosomal protein L4 [Ruegeria pomeroyi DSS-3]
gi|81558238|sp|Q5LLU7.1|RL4_SILPO RecName: Full=50S ribosomal protein L4
gi|56680372|gb|AAV97038.1| ribosomal protein L4 [Ruegeria pomeroyi DSS-3]
Length = 205
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH T SEVS + KK +RQKGTG ARHG+ + P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQAGTHKVLTKSEVSYSTKKIYRQKGTGGARHGSRKSPT 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ E KT +
Sbjct: 82 FRHGGVYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAEAEG-KTAALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ K+ L+ DG ++E A +N+ +++LPS+
Sbjct: 141 VANL-GWKRALVIDGAAVNEGFARAARNIEGLDILPSM 177
>gi|374298075|ref|YP_005048266.1| 50S ribosomal protein L4 [Clostridium clariflavum DSM 19732]
gi|359827569|gb|AEV70342.1| LSU ribosomal protein L4P [Clostridium clariflavum DSM 19732]
Length = 207
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 103/169 (60%), Gaps = 13/169 (7%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ +VF V + K+++H+VV QLA ++QGT STKT SEV G G KPWRQKGTGRAR
Sbjct: 15 GDINLSDEVFGVEVNKEVVHQVVVNQLANKRQGTQSTKTKSEVRGGGIKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG++R Q+ G + GPKPRS+ L KKVRRL LK LS++ E +++V + L +
Sbjct: 75 HGSIRSAQWVKGGIVLGPKPRSYRYTLPKKVRRLALKSVLSSKVNENEIIVLDKLSFDAI 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCI------HEKLKLATQNLHYVNVL 274
KTK QM K L DG + EK++ + +N+ V L
Sbjct: 135 KTK-------QMVEVLKNLKVDGTAVLLIAEKDEKIEKSARNIPGVKTL 176
>gi|156405170|ref|XP_001640605.1| predicted protein [Nematostella vectensis]
gi|156227740|gb|EDO48542.1| predicted protein [Nematostella vectensis]
Length = 299
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 110/197 (55%), Gaps = 11/197 (5%)
Query: 107 FNEDK--GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
F +DK G + L VF R DI+HRVV WQ AKR+ GT K SEV G G+KPW Q
Sbjct: 91 FKDDKSLGMIELNDFVFGENPRIDILHRVVVWQRAKRRAGTACVKDRSEVRGGGRKPWPQ 150
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV-- 222
KG +AR G++R P FRGG +HGPKPRS+ L KKVRR+GL++ALS R A+G L +
Sbjct: 151 KGLNKARQGSIRAPHFRGGGVVHGPKPRSYEYTLPKKVRRMGLRVALSVRLAQGDLHIVE 210
Query: 223 -FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRST 281
F+D+E + ++ +Q VL+ G +E+L A +L V+V S +
Sbjct: 211 SFDDIE----DDQDLMPILDQRGWQSAVLV--DGSPNERLFEAAADLDKVDVFYSENVNV 264
Query: 282 TQSFLIYYYFLDFDFKK 298
L + L D K
Sbjct: 265 YSILLRHNLILSLDAVK 281
>gi|254510767|ref|ZP_05122834.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11]
gi|221534478|gb|EEE37466.1| ribosomal protein, L4/L1 family [Rhodobacteraceae bacterium KLH11]
Length = 205
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GP RSH L KK R+LGL+ ALSA+A G+L+V E+ E
Sbjct: 74 HGDRNAPIFRGGGIYKGPVVRSHGHDLPKKFRKLGLRHALSAKAKAGELVVIENAEAEG- 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++E A++N+ +++LPS+
Sbjct: 133 KTAALAKQVANL-GWKRALVIDGATVNEGFLKASKNIEGLDILPSM 177
>gi|167629468|ref|YP_001679967.1| 50S ribosomal protein L4 [Heliobacterium modesticaldum Ice1]
gi|226730671|sp|B0TC57.1|RL4_HELMI RecName: Full=50S ribosomal protein L4
gi|167592208|gb|ABZ83956.1| 50S ribosomal protein l4 [Heliobacterium modesticaldum Ice1]
Length = 207
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 96/155 (61%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N + G + L +F + + ++H+ V QLA ++GTH K+ EVSG
Sbjct: 1 MPKVALYNTEGAQVGEIELNDAIFGIEPNEAVMHQAVVTQLAAWRRGTHKVKSRGEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR GT R P +RGG + GP+PRS+ I + KKVRRL LK ALS +
Sbjct: 61 GKKPWRQKGTGRARAGTSRSPLWRGGAIIFGPQPRSYKIAMPKKVRRLALKSALSDKVRS 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
G L+V + LE+ + KTK I N+++ +K LL
Sbjct: 121 GNLIVVDALEMDAPKTKVIAGILNKLKVERKALLV 155
>gi|254460398|ref|ZP_05073814.1| ribosomal protein L4/L1 family [Rhodobacterales bacterium HTCC2083]
gi|206676987|gb|EDZ41474.1| ribosomal protein L4/L1 family [Rhodobacteraceae bacterium
HTCC2083]
Length = 205
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH KT SEV + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FRGG GP RSH L KKVR LGLK+ALSA+A G+L+V D + KT +
Sbjct: 82 FRGGGIYKGPVVRSHGHDLPKKVRALGLKLALSAKAKAGELVVI-DEAAGAMKTSALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ M K+ L+ DG ++E A +N+ +++LPS+
Sbjct: 141 VSAM-GWKRALIIDGASVNEDFMQAARNIEGLDILPSM 177
>gi|126739690|ref|ZP_01755382.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6]
gi|126719336|gb|EBA16046.1| 50S ribosomal protein L4 [Roseobacter sp. SK209-2-6]
Length = 205
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ D+F + R DI+HR+VRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELSEDLFGLEPRADILHRLVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V ED
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIED-AASEG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG ++E A++N+ +++LP++
Sbjct: 133 KTAALAKQVKDL-GWKRALVIDGASVNEDFLKASRNIEGLDILPTM 177
>gi|167036802|ref|YP_001664380.1| 50S ribosomal protein L4 [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|167039521|ref|YP_001662506.1| 50S ribosomal protein L4 [Thermoanaerobacter sp. X514]
gi|256752633|ref|ZP_05493485.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1]
gi|300915228|ref|ZP_07132543.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561]
gi|307725152|ref|YP_003904903.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter sp. X513]
gi|320115224|ref|YP_004185383.1| 50S ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|326390660|ref|ZP_08212215.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200]
gi|345018533|ref|YP_004820886.1| 50S ribosomal protein L4 [Thermoanaerobacter wiegelii Rt8.B1]
gi|392939575|ref|ZP_10305219.1| 50S ribosomal protein L4, bacterial/organelle [Thermoanaerobacter
siderophilus SR4]
gi|226731436|sp|B0KCK1.1|RL4_THEP3 RecName: Full=50S ribosomal protein L4
gi|226731437|sp|B0K5P4.1|RL4_THEPX RecName: Full=50S ribosomal protein L4
gi|166853761|gb|ABY92170.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X514]
gi|166855636|gb|ABY94044.1| ribosomal protein L4/L1e [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|256748453|gb|EEU61505.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus CCSD1]
gi|300888952|gb|EFK84099.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X561]
gi|307582213|gb|ADN55612.1| ribosomal protein L4/L1e [Thermoanaerobacter sp. X513]
gi|319928315|gb|ADV79000.1| ribosomal protein L4/L1e [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|325993338|gb|EGD51775.1| ribosomal protein L4/L1e [Thermoanaerobacter ethanolicus JW 200]
gi|344033876|gb|AEM79602.1| ribosomal protein L4/L1e [Thermoanaerobacter wiegelii Rt8.B1]
gi|392291325|gb|EIV99768.1| 50S ribosomal protein L4, bacterial/organelle [Thermoanaerobacter
siderophilus SR4]
Length = 206
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 112/195 (57%), Gaps = 9/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L VF VP+ ++H V LA ++QGTHSTKT EV G G+K
Sbjct: 4 VAVYNVKGEQVGEIELKDSVFGVPVNVPVMHEAVLNYLANQRQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + GPKPR ++ KL KKV+RL LK ALS++ + ++
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGIVFGPKPRDYSYKLPKKVKRLALKSALSSKVRDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V ++ ++ KTK +V +++ G + ++L+ +N+ V L +
Sbjct: 124 IVLDEFKLDQPKTKKVVELLKNFNVDSALIVVPEG--EKNVELSARNIPGVKTLYA---- 177
Query: 281 TTQSFLIYYYFLDFD 295
++L Y L +D
Sbjct: 178 ---NYLNTYDILKYD 189
>gi|365157325|ref|ZP_09353599.1| 50S ribosomal protein L4 [Bacillus smithii 7_3_47FAA]
gi|363625471|gb|EHL76510.1| 50S ribosomal protein L4 [Bacillus smithii 7_3_47FAA]
Length = 207
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 6/178 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L +F + + ++H V Q A +QGTH K SEVSG
Sbjct: 1 MPKVALYNQSGTKVGDIELNDSIFGITPNEHVLHEAVVMQRASLRQGTHKVKNRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++V + L KTK F N +TK +++ DG +E + L+ +N+ V V+
Sbjct: 121 NNIVVVDTLNFDVPKTKEFTKVLKNLSVDTKALVVTDGS--NENVVLSARNIPGVTVI 176
>gi|295398289|ref|ZP_06808331.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC
11563]
gi|294973428|gb|EFG49213.1| ribosomal protein L4/L1 family protein [Aerococcus viridans ATCC
11563]
Length = 207
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +VF + ++ I+ VV Q A +QGTH K SEVSG G+KPWRQKGTGRAR
Sbjct: 15 GEITLNDEVFAIEPNENAIYDVVIMQQASLRQGTHKVKGRSEVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG GP PRS+A KL +KVRRL L+ ALS + AE +V ++L +
Sbjct: 75 QGSIRSPQWVGGGRAFGPTPRSYAYKLPRKVRRLALRSALSTKVAENNFIVVDELAFETP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK N ++ KVL+ ++ +L+ +NL V V+
Sbjct: 135 KTKLFQEVLNNLQVENKVLVVINKD-NDNAQLSARNLPNVKVV 176
>gi|225629697|ref|ZP_03787669.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591450|gb|EEH12518.1| ribosomal protein L4 [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 201
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 103/175 (58%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N++ G L +F + I+H +VRWQLA R+ GTH TK IS+VSGT KP+
Sbjct: 5 LVNLSNDNVGTAQLNPLIFSAKQKLSILHDIVRWQLANRRAGTHKTKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK T RAR G+LR PQFRGG + P RSH LNKKVR+ GLKIALS + ++++
Sbjct: 65 GQKRTARARPGSLRSPQFRGGGIILRPFVRSHTYSLNKKVRKFGLKIALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++L + KT + + + ++ D G + L A +NLHYV+++ +
Sbjct: 125 LDNLNIDVKKTSEMCKCIKNFKFSSFSIVGDYG---DDLLRAAKNLHYVDLIKPI 176
>gi|212704584|ref|ZP_03312712.1| hypothetical protein DESPIG_02646 [Desulfovibrio piger ATCC 29098]
gi|212671983|gb|EEB32466.1| 50S ribosomal protein L4 [Desulfovibrio piger ATCC 29098]
Length = 207
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 92/134 (68%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + L+ DVF+V R +I++ VVR Q+A ++ GTH KT + VSG G K
Sbjct: 4 VKVYDQNKQECGELTLSADVFEVEARPEILNLVVRAQMAAKRAGTHMAKTRAFVSGGGVK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P +RGG + GP+PR ++ K+N KVR L +K+ALS+R A L
Sbjct: 64 PWKQKGTGRARSGSNRSPVWRGGAIVFGPQPRDYSFKVNSKVRALAMKMALSSRLAAENL 123
Query: 221 LVFEDLEVPSHKTK 234
LV + +E+P KTK
Sbjct: 124 LVVKGIELPEAKTK 137
>gi|254438218|ref|ZP_05051712.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307]
gi|198253664|gb|EDY77978.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307]
Length = 205
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ Q GTH KT SEV + KK +RQKGTG AR
Sbjct: 14 GSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GP PRSH +L KK R+LGL+ ALSA+ A G+L++ +++++
Sbjct: 74 HGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAGELVIVDNIDIKDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
KT + + K+ L+ D ++E +A +N+ +N LP
Sbjct: 134 KTSALAKTVGAL-GWKRCLIID-ATVNEDFAVAARNITSINALP 175
>gi|288917231|ref|ZP_06411600.1| ribosomal protein L4/L1e [Frankia sp. EUN1f]
gi|288351422|gb|EFC85630.1| ribosomal protein L4/L1e [Frankia sp. EUN1f]
Length = 247
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 106/180 (58%), Gaps = 6/180 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D +PV D G + L G VFDVP+ +IH+VV QLA +QGTH TKT EV G
Sbjct: 20 DRTVPVHAPAGGDAGSVELPGAVFDVPLNVPLIHQVVVAQLAAARQGTHDTKTRGEVRGG 79
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+LR PQF GG +HGPKPR++ + KK++ L+ ALS RA
Sbjct: 80 GRKPYRQKGTGRARQGSLRAPQFTGGGVVHGPKPRNYDQRTPKKMKAAALRGALSDRARN 139
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V L + PS K F + + ++VL+ E+ L+ +N+ V++L
Sbjct: 140 DRVHVVSSLVAGDAPSTKAAF--KALTSLVDARRVLVV-AQRSDEQTWLSLRNVAAVHLL 196
>gi|225574701|ref|ZP_03783311.1| hypothetical protein RUMHYD_02778 [Blautia hydrogenotrophica DSM
10507]
gi|225038091|gb|EEG48337.1| 50S ribosomal protein L4 [Blautia hydrogenotrophica DSM 10507]
Length = 206
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 8/188 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V I + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VSVLNMEGNEVGTIELNDAVFGVEINEHLVHLAVVRQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR +++K+N+K R LK AL+A+ + KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYSVKMNRKERLAALKSALTAKVQDNKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V +DL+ + KTK + N N ++ K +++ + + + L+ +N +P V +
Sbjct: 124 IVVDDLKFEAIKTKDMQNVLNNLKAEKALVVTP--AVDQNVVLSARN------IPEVQTA 175
Query: 281 TTQSFLIY 288
T + +Y
Sbjct: 176 TVNTINVY 183
>gi|289435897|ref|YP_003465769.1| hypothetical protein lse_2536 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|422423360|ref|ZP_16500313.1| ribosomal protein L4/L1 family [Listeria seeligeri FSL S4-171]
gi|289172141|emb|CBH28687.1| rplD [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313636112|gb|EFS01986.1| ribosomal protein L4/L1 family [Listeria seeligeri FSL S4-171]
Length = 207
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 99/167 (59%), Gaps = 1/167 (0%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L VF + + ++ V+ Q A +QGTH K SEV G G+KPWRQKGTGR
Sbjct: 13 NAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS++ E KL+V E L
Sbjct: 73 ARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFD 132
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ KTK + + K L+ E ++L+ +NL + V+P+
Sbjct: 133 APKTKEFAAFLKNISVDTKALIVVASE-SENVELSARNLQGITVIPA 178
>gi|315655880|ref|ZP_07908778.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333]
gi|315489944|gb|EFU79571.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 51333]
Length = 214
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L G+VFD+ ++H+VV QLA +QGTH+TKT +VSG GKKPWRQKGTGRAR
Sbjct: 18 GTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKKPWRQKGTGRAR 77
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R PQF GG T+HGP+PR ++ KK++ L+ ALS RA G++ V D E
Sbjct: 78 QGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRIHVLSDFGVKET 137
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
PS TK + ++++ L+ + + + L+ NL
Sbjct: 138 PS--TKVAKAALQGVVDSRRALIVLTPEVDDVVALSVNNL 175
>gi|220903935|ref|YP_002479247.1| 50S ribosomal protein L4 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|254803730|sp|B8IYH3.1|RL4_DESDA RecName: Full=50S ribosomal protein L4
gi|219868234|gb|ACL48569.1| ribosomal protein L4/L1e [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 210
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 96/152 (63%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + LA DVF++ +R +I++ V R Q+A ++ GTH+ KT + VSG G K
Sbjct: 4 VKVYDQNKQESGEVTLASDVFEIEVRPEILNLVARAQMAAKRAGTHNVKTRAFVSGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P +RGG GP PR + K+N KVR L LK+ALS+R A L
Sbjct: 64 PWKQKGTGRARAGSNRSPIWRGGAITFGPSPRDYTFKVNSKVRSLALKMALSSRLAAESL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + + +P KTK + + TK +++
Sbjct: 124 MVVKGIVLPEAKTKHFAKVADTLGLTKALIVA 155
>gi|403382869|ref|ZP_10924926.1| 50S ribosomal protein L4 [Paenibacillus sp. JC66]
Length = 207
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 1/168 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L+ VF + K ++H V Q A +QGTH K SEV G G+K
Sbjct: 4 VALYNISGEQVGELELSEAVFGIEPNKHVLHDAVVMQQASLRQGTHKVKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG + GP PRS+A KL KKVRRL +K ALS++ E ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVIENEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+V + L++ KTK IV + +K L+ E + L+ +N+
Sbjct: 124 IVLDQLQLSQPKTKEIVAMLKNLNVDRKALVV-APEFDENVALSARNI 170
>gi|125975385|ref|YP_001039295.1| 50S ribosomal protein L4 [Clostridium thermocellum ATCC 27405]
gi|256005328|ref|ZP_05430294.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360]
gi|281419347|ref|ZP_06250362.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20]
gi|385777821|ref|YP_005686986.1| 50S ribosomal protein L4 [Clostridium thermocellum DSM 1313]
gi|419723227|ref|ZP_14250360.1| ribosomal protein L4/L1e [Clostridium thermocellum AD2]
gi|419727128|ref|ZP_14254134.1| ribosomal protein L4/L1e [Clostridium thermocellum YS]
gi|166234659|sp|A3DJH3.1|RL4_CLOTH RecName: Full=50S ribosomal protein L4
gi|125715610|gb|ABN54102.1| ribosomal protein L4/L1e [Clostridium thermocellum ATCC 27405]
gi|255990764|gb|EEU00880.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 2360]
gi|281406967|gb|EFB37230.1| ribosomal protein L4/L1e [Clostridium thermocellum JW20]
gi|316939501|gb|ADU73535.1| ribosomal protein L4/L1e [Clostridium thermocellum DSM 1313]
gi|380769533|gb|EIC03447.1| ribosomal protein L4/L1e [Clostridium thermocellum YS]
gi|380780692|gb|EIC10357.1| ribosomal protein L4/L1e [Clostridium thermocellum AD2]
Length = 208
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + + K IH+V+ QLA R+QGT STKT SEV G G+KPWRQKGTGRAR
Sbjct: 15 GEINLRDDIFGIEVNKHAIHQVIVNQLANRRQGTQSTKTKSEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG++R Q+ G GPKPRS+ + KK+RRL LK ALS++ E +LLV + L
Sbjct: 75 HGSIRSAQWVKGGIALGPKPRSYKYAVPKKLRRLALKSALSSKVNENELLVLDSLNFDEI 134
Query: 232 KTKFIVNYYNQM---ENTKKVLLCDGGCIHEKLKLATQNL 268
KTK + N + + T ++L D + ++L+ +N+
Sbjct: 135 KTKQMANVLKNLKVNDTTAVLVLADK---NRNVELSARNI 171
>gi|399055808|ref|ZP_10743458.1| 50S ribosomal protein L4, bacterial/organelle [Brevibacillus sp.
CF112]
gi|433543291|ref|ZP_20499701.1| 50S ribosomal protein L4 [Brevibacillus agri BAB-2500]
gi|398046671|gb|EJL39265.1| 50S ribosomal protein L4, bacterial/organelle [Brevibacillus sp.
CF112]
gi|432185420|gb|ELK42911.1| 50S ribosomal protein L4 [Brevibacillus agri BAB-2500]
Length = 207
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 94/155 (60%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + +++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQTGSQVGEIELADSVFGIEPNNAVLYDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALSA+
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSAKVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+LLV + L + KTK + N ++ +KVL+
Sbjct: 121 NELLVLDALNFAAPKTKEMTAVLNNLKVDRKVLIV 155
>gi|111220547|ref|YP_711341.1| 50S ribosomal protein L4 [Frankia alni ACN14a]
gi|111148079|emb|CAJ59747.1| 50S ribosomal protein L4 [Frankia alni ACN14a]
Length = 236
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/146 (48%), Positives = 92/146 (63%), Gaps = 5/146 (3%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
D G L G VFDVP+ +IH+VV QLA +QGTH+TKT EV G G+KP+RQKGTGR
Sbjct: 27 DGGSAELPGGVFDVPLNVPLIHQVVVAQLAAARQGTHATKTRGEVRGGGRKPYRQKGTGR 86
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL--- 226
AR G+LR PQF GG +HGP PRS+ + KK++ L+ ALS RA ++ V L
Sbjct: 87 ARQGSLRAPQFTGGGVVHGPTPRSYDQRTPKKMKAAALRGALSDRARNNRVHVVSSLVSG 146
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLC 252
E PS TK V + +T++VL+
Sbjct: 147 EAPS--TKAAVTALRTVADTRRVLVV 170
>gi|23097575|ref|NP_691041.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831]
gi|46577267|sp|Q8ETY1.1|RL4_OCEIH RecName: Full=50S ribosomal protein L4
gi|22775798|dbj|BAC12076.1| 50S ribosomal protein L4 [Oceanobacillus iheyensis HTE831]
Length = 207
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + ++H V Q A +QGTH+ K SEV G G+KPWRQKGTGRAR
Sbjct: 15 GDIELNDSVFGIEPNTHVLHEAVVMQRASLRQGTHAVKNRSEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G+ R PQ+ GG T+ GP PRS++ KL KKVRRL L+ ALS++ E LLV E++ + +
Sbjct: 75 QGSTRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALRSALSSKVNEESLLVLENISIDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK IVN ++ K L+ E + + NL V VL
Sbjct: 135 KTKEIVNILKGLQVDAKALIVLSEK-DETVIRSANNLQNVTVL 176
>gi|339445914|ref|YP_004711918.1| hypothetical protein EGYY_24480 [Eggerthella sp. YY7918]
gi|338905666|dbj|BAK45517.1| hypothetical protein EGYY_24480 [Eggerthella sp. YY7918]
Length = 207
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 107/177 (60%), Gaps = 5/177 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + + G + LA VF + ++H VVR Q A +QGTH TKT +VSG GKK
Sbjct: 4 IEIKDASGKKAGSVDLAPSVFGIEPNVPVMHTVVRSQRAAWRQGTHDTKTRGQVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR GT+R PQ+ GG T+ GP PRS+A ++NKK +L ++ ALSA+ A+G+L
Sbjct: 64 PWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNKKEVKLAMRSALSAKLADGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK--LATQNLHYVNVLP 275
V E+ + +TK + + +V L G E + L+ +N+ VN++P
Sbjct: 124 TVVENFKFEKPRTKDAMTALKALGLEGRVTLVIG---DEDVNTYLSFRNIPKVNIIP 177
>gi|269792793|ref|YP_003317697.1| 50S ribosomal protein L4 [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269100428|gb|ACZ19415.1| ribosomal protein L4/L1e [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 208
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 104 TNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
NF E G + L+ VF P+ +H+VV LA + GTH TK EVSG G+KPWR
Sbjct: 7 VNFNGEVIGEVELSEAVFGAPVHVPAMHQVVVAHLANCRVGTHDTKDRGEVSGGGRKPWR 66
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QK TGRAR G++R P + GG HGP PR + K+NKKVRRL L+ AL+ +A E +LV
Sbjct: 67 QKHTGRARQGSIRSPLWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAKEDNMLVL 126
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE 259
E E+ + KTK ++++ +++ KK LL IHE
Sbjct: 127 ERFELEAPKTKAMISFLERVQGGKKPLL----VIHE 158
>gi|85709056|ref|ZP_01040122.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1]
gi|85690590|gb|EAQ30593.1| 50S ribosomal protein L4 [Erythrobacter sp. NAP1]
Length = 207
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 104/179 (58%), Gaps = 1/179 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L+ DVF V R DI+HRVV WQL R+ T+ S+V+ TG
Sbjct: 1 MKVKVQKIDGKASGDIELSDDVFGVEPRADILHRVVTWQLENRRATARPTRERSDVARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK QKG+G ARHG P F GG HG + R LNKK+R LGLK+ALS +A +G
Sbjct: 61 KKFGAQKGSGGARHGDRGAPIFIGGGKAHGARKRDFNQSLNKKIRALGLKMALSTKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + LE+ KT+ + ++++ KVL+ DG +++ K A NL VNVLP+
Sbjct: 121 -LVVLDSLELKEAKTQALKGHFDKHGFAGKVLVIDGESVNDGFKQAAGNLKGVNVLPAA 178
>gi|302871499|ref|YP_003840135.1| 50S ribosomal protein L4 [Caldicellulosiruptor obsidiansis OB47]
gi|312135495|ref|YP_004002833.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL]
gi|302574358|gb|ADL42149.1| ribosomal protein L4/L1e [Caldicellulosiruptor obsidiansis OB47]
gi|311775546|gb|ADQ05033.1| ribosomal protein L4/L1e [Caldicellulosiruptor owensensis OL]
Length = 208
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 106/176 (60%), Gaps = 4/176 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I L KKVRRL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVRRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V + ++ +KTK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEK--NEYLQKSTRNIPEVKTL 177
>gi|114570344|ref|YP_757024.1| 50S ribosomal protein L4 [Maricaulis maris MCS10]
gi|122315785|sp|Q0ANQ1.1|RL4_MARMM RecName: Full=50S ribosomal protein L4
gi|114340806|gb|ABI66086.1| LSU ribosomal protein L4P [Maricaulis maris MCS10]
Length = 211
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 103/177 (58%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
I V +D G + L VF + +R D++ RVV+WQLA RQQGTH T SE++ T K
Sbjct: 3 IEVKTLAAKDAGAIDLDDAVFGIEEVRSDLLQRVVKWQLAARQQGTHKTLGRSEINRTKK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
+ RQKG G ARHG PQF GG HGP+ RSHA +L KKVR LGL+ ALSA+
Sbjct: 63 RFGRQKGGGTARHGARSAPQFVGGGKAHGPRVRSHAHELPKKVRALGLRHALSAKLGAKS 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L++ +D + + +TK + + + L+ G ++E A +NL ++VLP+
Sbjct: 123 LVIIDDAALDAPQTKALRTSFEGL-GISNALVISGAEVNENFAKAARNLPCIDVLPA 178
>gi|297569421|ref|YP_003690765.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2]
gi|296925336|gb|ADH86146.1| ribosomal protein L4/L1e [Desulfurivibrio alkaliphilus AHT2]
Length = 207
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 107/177 (60%), Gaps = 2/177 (1%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V V N E G + L +F V + ++H +VR Q A R+ GT TKT +VSG+GK
Sbjct: 3 VTEVYNIKKEKVGDVELDDALFGVEVNPHLLHDIVRMQRANRRAGTACTKTRKDVSGSGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G+ + P +RGG T+ GP+PRS+A + +K R+LGL++ALS+R A+
Sbjct: 63 KPWRQKGTGRARAGSRKSPVWRGGGTVFGPRPRSYAFSMPRKARKLGLRMALSSRCADNL 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+V +D ++ KTK V + +++ E L+ +++N+ V+P+
Sbjct: 123 LVVLDDFQLDEIKTKKFVEVMDGFSIDNALIVVPESI--ETLERSSRNVPGFKVMPT 177
>gi|163851586|ref|YP_001639629.1| 50S ribosomal protein L4 [Methylobacterium extorquens PA1]
gi|218530395|ref|YP_002421211.1| 50S ribosomal protein L4 [Methylobacterium extorquens CM4]
gi|240138754|ref|YP_002963226.1| 50S ribosomal subunit protein L4 [Methylobacterium extorquens AM1]
gi|254561354|ref|YP_003068449.1| 50S ribosomal subunit protein L4, regulates expression of S10
operon [Methylobacterium extorquens DM4]
gi|418058029|ref|ZP_12696010.1| ribosomal protein L4/L1e [Methylobacterium extorquens DSM 13060]
gi|226730686|sp|A9W4Q2.1|RL4_METEP RecName: Full=50S ribosomal protein L4
gi|254803743|sp|B7L0R2.1|RL4_METC4 RecName: Full=50S ribosomal protein L4
gi|163663191|gb|ABY30558.1| ribosomal protein L4/L1e [Methylobacterium extorquens PA1]
gi|218522698|gb|ACK83283.1| ribosomal protein L4/L1e [Methylobacterium extorquens CM4]
gi|240008723|gb|ACS39949.1| 50S ribosomal subunit protein L4, regulates expression of S10
operon [Methylobacterium extorquens AM1]
gi|254268632|emb|CAX24591.1| 50S ribosomal subunit protein L4, regulates expression of S10
operon [Methylobacterium extorquens DM4]
gi|373568357|gb|EHP94305.1| ribosomal protein L4/L1e [Methylobacterium extorquens DSM 13060]
Length = 206
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 102/175 (58%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T G + L ++ + R DI+ R+VR+QLAKR+ GTH+ K S+V T KK
Sbjct: 3 LDITTLDGGSAGSVELNEAIYGLEPRADILQRMVRYQLAKRRAGTHAVKNRSDVDRTSKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP R H+ L KKVR L LK ALSA+A L
Sbjct: 63 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALKHALSAKAKASTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +D++V +HKTK ++ + ++ L+ G + E A + + ++VLP
Sbjct: 123 IVVDDIKVDNHKTKAMIERFEKL-GLSSALIIGGSEVDENFGRAARAIPKIDVLP 176
>gi|227509932|ref|ZP_03939981.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190538|gb|EEI70605.1| 50S ribosomal protein L4 [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 207
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/167 (44%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF + +++ V Q A R+QGTHS K S V G GKKPWRQKGTGRAR
Sbjct: 15 GTVSLNDDVFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A L KKV RL LK LS + A+ KL+V + L +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVADEKLVVVDSLVFETP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC--DGGCIHEKLKLATQNLHYVNVLPS 276
KTK ++ + K L+ DG +EK L+ NL V V+ +
Sbjct: 135 KTKEFAALLEKLNVSTKTLIVLEDG---NEKASLSAHNLENVKVVSA 178
>gi|163815976|ref|ZP_02207346.1| hypothetical protein COPEUT_02156 [Coprococcus eutactus ATCC 27759]
gi|158448786|gb|EDP25781.1| 50S ribosomal protein L4 [Coprococcus eutactus ATCC 27759]
Length = 206
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 81/114 (71%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V I + I+H+ V QLA +QGT S KT SEVSG G+KPWRQKGTG AR G+ R PQ
Sbjct: 23 VFGVEINEHIMHKAVVGQLANSRQGTQSAKTRSEVSGGGRKPWRQKGTGHARQGSTRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
+ GG + PKPR +++K+NKK ++L +K ALS++ AE KL+V + LE+ KT
Sbjct: 83 WTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAENKLVVVDKLELQEAKT 136
>gi|431792470|ref|YP_007219375.1| 50S ribosomal protein L4 [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430782696|gb|AGA67979.1| 50S ribosomal protein L4, bacterial/organelle [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 207
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 100/175 (57%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H+ V QLA +++GTHST EV G G+K
Sbjct: 4 VQVVNMQGSPVGELELNEYVFGIEPNVHVLHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GPKPR + L KKVRRL L+ ALS++ E +L
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAILFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQQL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V EDL + KT+ +V + +KK LL I E + +N+ V P
Sbjct: 124 IVLEDLSLSEAKTREMVKVLKALNVSKKALLVTDEFI-EAIDRTARNIEGVKTTP 177
>gi|254995178|ref|ZP_05277368.1| 50S ribosomal protein L4 [Anaplasma marginale str. Mississippi]
gi|255003352|ref|ZP_05278316.1| 50S ribosomal protein L4 [Anaplasma marginale str. Puerto Rico]
gi|255004476|ref|ZP_05279277.1| 50S ribosomal protein L4 [Anaplasma marginale str. Virginia]
Length = 178
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/97 (62%), Positives = 75/97 (77%)
Query: 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHG 188
++ VV WQLAKR+ GTH T+ IS+VSGT KP+RQK TGRAR G+LR PQFRGG + G
Sbjct: 1 MLRDVVTWQLAKRRAGTHKTRCISDVSGTTAKPYRQKHTGRARQGSLRSPQFRGGAVVFG 60
Query: 189 PKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFED 225
P RSHA LNKKVRRLGLK+ALS + ++ KL+V +D
Sbjct: 61 PVNRSHAYSLNKKVRRLGLKVALSMKVSDSKLVVLDD 97
>gi|86135763|ref|ZP_01054342.1| 50S ribosomal protein L4 [Roseobacter sp. MED193]
gi|85826637|gb|EAQ46833.1| 50S ribosomal protein L4 [Roseobacter sp. MED193]
Length = 205
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 101/177 (57%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L D+F + R DI+HRVVRWQ Q GTH KT SEV + KK
Sbjct: 3 LDVMNLDGSKAGDIELNADLFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG P FRGG GP RSH +L KK R+LGL+ ALSA+A G+L
Sbjct: 63 IYRQKGTGGARHGARSAPIFRGGGIYKGPVVRSHGHELTKKFRKLGLRHALSAKAKAGEL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V D KT + + K+ L+ DG ++E A++N+ +++LP++
Sbjct: 123 VVISDAAAEG-KTGALAKQVANL-GWKRALVIDGAEVNEGFLKASRNIEGLDILPTM 177
>gi|238855069|ref|ZP_04645397.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
269-3]
gi|238832313|gb|EEQ24622.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
269-3]
Length = 205
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 100/167 (59%), Gaps = 3/167 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L +VF + ++++ V Q A +QGTH+TK S V G GKKPWRQKGTG
Sbjct: 12 KDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A L +K RRL +K LS + + L+V + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQDNNLIVLDQLSL 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ KTK + KVL+ +E ++L+ +NL V V+P
Sbjct: 132 DAPKTKEFKAVLGNLNVDSKVLVV---SDNENVQLSARNLENVKVVP 175
>gi|403669805|ref|ZP_10934981.1| 50S ribosomal protein L4 [Kurthia sp. JC8E]
Length = 207
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ + Q A +QGTH TK SEVSG G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAIVAQRASLRQGTHKTKGRSEVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL KKVRRL LK ALS + AE LV + L + +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLALKSALSTKVAETNFLVVDALTLDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK V + K L+ ++E + L+ +N+ V VL
Sbjct: 135 KTKEFVKVLADLSVETKSLIVTAD-VNENVALSARNIPGVTVL 176
>gi|312622046|ref|YP_004023659.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis
2002]
gi|312202513|gb|ADQ45840.1| ribosomal protein L4/L1e [Caldicellulosiruptor kronotskyensis 2002]
Length = 208
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 107/176 (60%), Gaps = 4/176 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINNHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I+L KKV+RL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIELPKKVKRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V + ++ +KTK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEK--NEYLQKSTKNIPEVKTL 177
>gi|298345471|ref|YP_003718158.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063]
gi|315656194|ref|ZP_07909085.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|298235532|gb|ADI66664.1| 50S ribosomal protein L4 [Mobiluncus curtisii ATCC 43063]
gi|315493196|gb|EFU82796.1| 50S ribosomal protein L4 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 214
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L G+VFD+ ++H+VV QLA +QGTH+TKT +VSG GKKPWRQKGTGRAR
Sbjct: 18 GTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKKPWRQKGTGRAR 77
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R PQF GG T+HGP+PR ++ KK++ L+ ALS RA G++ V D E
Sbjct: 78 QGSIRAPQFTGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRIHVLSDFGVKET 137
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
PS TK + ++++ L+ + + + L+ NL
Sbjct: 138 PS--TKAAKAALQGVVDSRRALIVLTPEVDDVVALSVNNL 175
>gi|210611126|ref|ZP_03288740.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787]
gi|210152113|gb|EEA83120.1| hypothetical protein CLONEX_00930 [Clostridium nexile DSM 1787]
Length = 206
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 95/161 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL+ R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTTRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKL 261
+V +++ KTK N N +E +K +++ + G + L
Sbjct: 124 IVLDEMNFGEIKTKNFQNMLNNLEVSKALVVLEDGNTNAAL 164
>gi|414153573|ref|ZP_11409896.1| 50S ribosomal protein L4 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411454971|emb|CCO07800.1| 50S ribosomal protein L4 [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 206
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 95/152 (62%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +VF + + ++H V QLA ++QGTH TKT +EVSG G+K
Sbjct: 4 VALYNVNGEQVGEVELKDEVFGIEPHESVLHDAVTMQLANQRQGTHDTKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G T+ GP PR ++ L KKVRRL LK ALS++ +
Sbjct: 64 PWRQKGTGRARVGSIRSPLWRKGGTIFGPHPRDYSFSLPKKVRRLALKSALSSKVKSNNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + + KTK +V N + K +++
Sbjct: 124 IVLDALTIDAPKTKEMVRILNNLNANKALVVT 155
>gi|120402317|ref|YP_952146.1| 50S ribosomal protein L4 [Mycobacterium vanbaalenii PYR-1]
gi|119955135|gb|ABM12140.1| LSU ribosomal protein L4P [Mycobacterium vanbaalenii PYR-1]
Length = 219
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 109/179 (60%), Gaps = 2/179 (1%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+D IPV + G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG
Sbjct: 4 EDRKIPVRTPAGKTDGSIELPAELFDVEPNIALMHQVVNAQLAAKRQGTHSTKTRGEVSG 63
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
GKKP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ R L+ ALS RA
Sbjct: 64 GGKKPYRQKGTGRARQGSTRAPQFTGGGIVHGPKPRDYSERTPKKMIRAALRGALSDRAR 123
Query: 217 EGKL-LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ + E +E + TK ++ + + ++VL+ G E L+ +NL V+V+
Sbjct: 124 NDRIHAITEIVEGQTPSTKSAKSFLATLTDRRQVLVVIGRA-DEASALSVRNLPGVHVI 181
>gi|262066303|ref|ZP_06025915.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum
ATCC 33693]
gi|294783641|ref|ZP_06748965.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA]
gi|291379998|gb|EFE87516.1| ribosomal protein L4/L1 family protein [Fusobacterium periodonticum
ATCC 33693]
gi|294480519|gb|EFG28296.1| ribosomal protein L4 [Fusobacterium sp. 1_1_41FAA]
Length = 209
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYEGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|311070764|ref|YP_003975687.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942]
gi|419823171|ref|ZP_14346731.1| 50S ribosomal protein L4 [Bacillus atrophaeus C89]
gi|310871281|gb|ADP34756.1| 50S ribosomal protein L4 [Bacillus atrophaeus 1942]
gi|388472702|gb|EIM09465.1| 50S ribosomal protein L4 [Bacillus atrophaeus C89]
Length = 207
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 105/177 (59%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVVD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++V EDL + + KTK + + KK L+ ++E + L+ +N+ V V+
Sbjct: 121 NNIVVLEDLTLDAVKTKEMAAILKGLSVEKKALIVTAD-VNETVSLSARNIPGVTVV 176
>gi|304391027|ref|ZP_07372979.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304325910|gb|EFL93156.1| ribosomal protein L4/L1 family protein [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 214
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 3/125 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L G+VFD+ ++H+VV QLA +QGTH+TKT +VSG GKKPWRQKGTGRAR
Sbjct: 18 GTVELPGEVFDLDFNNPLVHQVVNAQLAAARQGTHATKTRGDVSGGGKKPWRQKGTGRAR 77
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R PQF GG T+HGP+PR ++ KK++ L+ ALS RA G++ V D E
Sbjct: 78 QGSIRAPQFAGGGTVHGPQPRDYSQNTPKKMKAAALRQALSDRARAGRIHVLSDFGVKET 137
Query: 229 PSHKT 233
PS K
Sbjct: 138 PSTKA 142
>gi|300814627|ref|ZP_07094878.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511246|gb|EFK38495.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 207
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 90/134 (67%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
++F+ + + +++ VV+ LA R+QGTHS KT SEV G G+KPWRQKGTGRAR G++R P
Sbjct: 22 NIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGGGRKPWRQKGTGRARQGSIRSP 81
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
QFRGG + KPR ++ KKVRRL LK L+++ + +++V + LE+ KTK +VN
Sbjct: 82 QFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQDSEIIVLDKLELNEIKTKTVVN 141
Query: 239 YYNQMENTKKVLLC 252
++ KK L+
Sbjct: 142 ILKDIKADKKALIV 155
>gi|282882504|ref|ZP_06291125.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B]
gi|281297646|gb|EFA90121.1| ribosomal protein, L4/L1 family [Peptoniphilus lacrimalis 315-B]
Length = 207
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 90/134 (67%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
++F+ + + +++ VV+ LA R+QGTHS KT SEV G G+KPWRQKGTGRAR G++R P
Sbjct: 22 NIFNCDVNEHVVYLVVKNILANRRQGTHSAKTRSEVRGGGRKPWRQKGTGRARQGSIRSP 81
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
QFRGG + KPR ++ KKVRRL LK L+++ + +++V + LE+ KTK +VN
Sbjct: 82 QFRGGGVVFAKKPRDYSYTTPKKVRRLALKSVLTSKLQDSEIIVLDKLELNEIKTKTVVN 141
Query: 239 YYNQMENTKKVLLC 252
++ KK L+
Sbjct: 142 ILKDIKADKKALIV 155
>gi|422338830|ref|ZP_16419790.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
subsp. polymorphum F0401]
gi|355371957|gb|EHG19300.1| ribosomal protein L4/L1 family protein [Fusobacterium nucleatum
subsp. polymorphum F0401]
Length = 209
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|374300543|ref|YP_005052182.1| 50S ribosomal protein L4 [Desulfovibrio africanus str. Walvis Bay]
gi|332553479|gb|EGJ50523.1| ribosomal protein L4/L1e [Desulfovibrio africanus str. Walvis Bay]
Length = 206
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 108/175 (61%), Gaps = 2/175 (1%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V + ++ G + LA +VF+VP+R +I++ VVR Q A + GTH TK + ++G GK
Sbjct: 3 VVKVVDQAKKEIGDIELAPEVFEVPVRPEILNLVVRAQRAAARSGTHMTKNRALITGGGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G+ R P +R G T GP+PRS+A K+NKKVR L LK+ALS++ A
Sbjct: 63 KPWRQKGTGRARAGSSRSPLWRHGATTFGPQPRSYAFKVNKKVRALALKMALSSKLAGND 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L+V + + KTK + K +++ + + L L+ +N+ + VL
Sbjct: 123 LMVLNGIIMDEIKTKKFAAVAKGLGLQKALIVLNE--VDNTLTLSARNVPDIKVL 175
>gi|260886877|ref|ZP_05898140.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC
35185]
gi|330839325|ref|YP_004413905.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185]
gi|402832964|ref|ZP_10881587.1| 50S ribosomal protein L4 [Selenomonas sp. CM52]
gi|260863476|gb|EEX77976.1| ribosomal protein L4/L1 family protein [Selenomonas sputigena ATCC
35185]
gi|329747089|gb|AEC00446.1| ribosomal protein L4/L1e [Selenomonas sputigena ATCC 35185]
gi|402281707|gb|EJU30333.1| 50S ribosomal protein L4 [Selenomonas sp. CM52]
Length = 207
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 106/177 (59%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N N+ G + L VF V + ++H+ V QLA R+ GTH+TKT V G G+K
Sbjct: 4 VAVYNSANQQVGDIELNDSVFGVEMNAGLVHQAVVMQLASRRLGTHATKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P + GG T+ GP+PRS+A ++ KK RRL +K ALS + A G
Sbjct: 64 PWRQKGTGRARSGSTRSPLWVGGGTVFGPQPRSYAFRMPKKQRRLAIKCALSDKVASGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V +DL+ + KTK +V K L+ +E ++L+++N+ V + ++
Sbjct: 124 IVLDDLQFDAPKTKSVVKMLGDFGVDAKSLIITLDE-NENVELSSRNIPGVKAINTM 179
>gi|227512865|ref|ZP_03942914.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577]
gi|227522993|ref|ZP_03953042.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290]
gi|227083865|gb|EEI19177.1| 50S ribosomal protein L4 [Lactobacillus buchneri ATCC 11577]
gi|227089811|gb|EEI25123.1| 50S ribosomal protein L4 [Lactobacillus hilgardii ATCC 8290]
Length = 207
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + +++ V Q A R+QGTHS K S V G GKKPWRQKGTGRAR
Sbjct: 15 GTVSLNDDIFGIEPNNNVVFDAVVMQRASRRQGTHSVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A L KKV RL LK LS + A+ KL+V + L +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYHLPKKVSRLALKSVLSEKVADEKLVVVDSLVFETP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC--DGGCIHEKLKLATQNLHYVNVLPS 276
KTK ++ + K L+ DG +EK L+ NL V V+ +
Sbjct: 135 KTKEFAALLEKLNVSTKTLIVLEDG---NEKASLSAHNLENVKVVSA 178
>gi|237742671|ref|ZP_04573152.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13]
gi|256846066|ref|ZP_05551524.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2]
gi|229430319|gb|EEO40531.1| LSU ribosomal protein L1E [Fusobacterium sp. 4_1_13]
gi|256719625|gb|EEU33180.1| ribosomal protein L4/L1 [Fusobacterium sp. 3_1_36A2]
Length = 209
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|294784803|ref|ZP_06750091.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27]
gi|294486517|gb|EFG33879.1| ribosomal protein L4/L1 family protein [Fusobacterium sp. 3_1_27]
Length = 209
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|421186876|ref|ZP_15644257.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB418]
gi|399965126|gb|EJN99752.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB418]
Length = 207
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA +F + + ++ V Q A +QGTHS K S VSG G+KPWRQKGTG AR
Sbjct: 15 GEVELADSIFAIEPNEAVVTDAVLMQRASLRQGTHSVKNRSTVSGGGRKPWRQKGTGNAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG GP PRS+A K+N+K RL LK LS + + ++ ++L
Sbjct: 75 QGSIRAPQWRGGAISMGPIPRSYAYKINRKAYRLALKSVLSDKVSAKNFVIIDELNFEKP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
TK I + N++E TKK LL +E KL+ +NL V V
Sbjct: 135 STKAIADSLNKLEATKKTLLVVDDA-NENAKLSARNLPNVQV 175
>gi|325663061|ref|ZP_08151511.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA]
gi|331086668|ref|ZP_08335745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA]
gi|325470515|gb|EGC73745.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 4_1_37FAA]
gi|330409834|gb|EGG89269.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 206
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 108/188 (57%), Gaps = 8/188 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ VF V + + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VSVYNIEGKEVGTIDLSDAVFGVEVNEHLLHMAVVSQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVEEKKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V +++ KTK N N + K +++ + G ++ +L+ +N +PSV +
Sbjct: 124 IVLDEINFGEIKTKNFQNVLNNLNVAKALVVLEDG--NKNAELSARN------IPSVKTA 175
Query: 281 TTQSFLIY 288
T + +Y
Sbjct: 176 RTNTINVY 183
>gi|94266252|ref|ZP_01289959.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1]
gi|93453178|gb|EAT03642.1| Ribosomal protein L4/L1e [delta proteobacterium MLMS-1]
Length = 207
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ VT +N K G + L + + + ++H +VR Q A R+ GT +TKT EVSG+
Sbjct: 1 MAVTEIYNTSKEKVGEIDLNDQLVKLEVNPHLLHDIVRMQRANRRAGTAATKTRKEVSGS 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
KKPWRQKGTGRAR GT + P +RGG T+ GP+PR ++ ++ +K RRLGL++A+SAR E
Sbjct: 61 SKKPWRQKGTGRARAGTRKSPVWRGGGTVFGPQPRDYSFRMPRKARRLGLRMAISARYQE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
LLV ED ++ KTK V + +++ E L+ +++N+ VLP+
Sbjct: 121 DMLLVLEDFQLDEIKTKKFVEVMDNFAIDNALIVVAERL--ENLERSSRNVPGFKVLPA 177
>gi|259500893|ref|ZP_05743795.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335]
gi|302190654|ref|ZP_07266908.1| 50S ribosomal protein L4 [Lactobacillus iners AB-1]
gi|309803686|ref|ZP_07697776.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d]
gi|309804951|ref|ZP_07699009.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c]
gi|309806704|ref|ZP_07700699.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b]
gi|309808465|ref|ZP_07702364.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a]
gi|309809135|ref|ZP_07703008.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D]
gi|312871314|ref|ZP_07731412.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a]
gi|312872623|ref|ZP_07732688.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1]
gi|312874014|ref|ZP_07734049.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d]
gi|312874786|ref|ZP_07734805.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b]
gi|315654025|ref|ZP_07906941.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195]
gi|325912358|ref|ZP_08174754.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D]
gi|325913218|ref|ZP_08175587.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B]
gi|329920653|ref|ZP_08277340.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G]
gi|349611927|ref|ZP_08891157.1| 50S ribosomal protein L4 [Lactobacillus sp. 7_1_47FAA]
gi|259167587|gb|EEW52082.1| 50S ribosomal protein L4 [Lactobacillus iners DSM 13335]
gi|308164284|gb|EFO66541.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 11V1-d]
gi|308165711|gb|EFO67936.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 09V1-c]
gi|308166884|gb|EFO69068.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 03V1-b]
gi|308168293|gb|EFO70412.1| 50S ribosomal protein L4 [Lactobacillus iners LactinV 01V1-a]
gi|308170580|gb|EFO72600.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 2503V10-D]
gi|311089531|gb|EFQ47956.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2053A-b]
gi|311090354|gb|EFQ48763.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2052A-d]
gi|311091665|gb|EFQ50044.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 2062A-h1]
gi|311093328|gb|EFQ51674.1| 50S ribosomal protein L4 [Lactobacillus iners LEAF 3008A-a]
gi|315488721|gb|EFU78367.1| 50S ribosomal protein L4 [Lactobacillus iners ATCC 55195]
gi|325475829|gb|EGC78999.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 143-D]
gi|325477482|gb|EGC80625.1| 50S ribosomal protein L4 [Lactobacillus iners UPII 60-B]
gi|328935911|gb|EGG32371.1| 50S ribosomal protein L4 [Lactobacillus iners SPIN 1401G]
gi|348608392|gb|EGY58377.1| 50S ribosomal protein L4 [Lactobacillus sp. 7_1_47FAA]
Length = 204
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 109/177 (61%), Gaps = 3/177 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I V + + G + L +F+V ++ + Q A ++QGTH+TK S VSG G
Sbjct: 1 MAIKVIDQKGKSVGEVDLNKCIFEVEPNDSVVFEAIIRQRAGKRQGTHATKNRSAVSGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKPW+QKGTGRAR G++R PQ+RGG T+ GP PRS+ + + +K RRL +K LS + A+G
Sbjct: 61 KKPWKQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYKVDMPRKARRLAIKSVLSQKVADG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + L + + KTK + ++ ++ + KVL+ + ++L+ +NL V V+P
Sbjct: 121 NLIVLDQLTLATPKTKDLKAIFSAIKVSGKVLVVSD---DKNVQLSGKNLPQVKVVP 174
>gi|114799746|ref|YP_761528.1| 50S ribosomal protein L4 [Hyphomonas neptunium ATCC 15444]
gi|123128466|sp|Q0BYB5.1|RL4_HYPNA RecName: Full=50S ribosomal protein L4
gi|114739920|gb|ABI78045.1| ribosomal protein L4 [Hyphomonas neptunium ATCC 15444]
Length = 214
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 105/178 (58%), Gaps = 2/178 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDV-PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ + V + G + L +F + IR DI+ R VRWQLA+RQ GTH K+ SEV+ T
Sbjct: 1 MELAVKTLAGDAAGNIDLDDAIFGIDEIRGDILQRTVRWQLARRQAGTHKAKSRSEVNRT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
KK +QKG+G ARHG+ P F GG HGP+ RSHA L KK+R++ L ALS++A +
Sbjct: 61 TKKSIKQKGSGGARHGSRNAPIFVGGGIAHGPRVRSHAHDLPKKIRKMALAHALSSKAKD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V + E+ S KTK ++ + + + L+ G ++E A +N+ ++VLP
Sbjct: 121 SSIMVIDTCELDSPKTKGLIQAFKDL-GIENALIISGTEVNENFARAARNIPNIDVLP 177
>gi|254303419|ref|ZP_04970777.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|148323611|gb|EDK88861.1| ribosomal protein L4 [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 209
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTLEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDVIETPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|167759861|ref|ZP_02431988.1| hypothetical protein CLOSCI_02224 [Clostridium scindens ATCC 35704]
gi|336421094|ref|ZP_08601254.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 5_1_57FAA]
gi|167662480|gb|EDS06610.1| 50S ribosomal protein L4 [Clostridium scindens ATCC 35704]
gi|336002453|gb|EGN32562.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 5_1_57FAA]
Length = 206
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 99/161 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L+ VF V I + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTMDLSDAVFGVEINEHLLHMAVVNQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL+A+ E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTAKVEEKKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKL 261
+V +++++ KTK N ++ +K +++ + G + ++
Sbjct: 124 IVVDEIKLDEIKTKNFANILKNLDVSKALVVLEDGNTNAEV 164
>gi|331004122|ref|ZP_08327602.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str.
F0167]
gi|402312693|ref|ZP_10831617.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium ICM7]
gi|404483000|ref|ZP_11018225.1| 50S ribosomal protein L4 [Clostridiales bacterium OBRC5-5]
gi|330411532|gb|EGG90942.1| 50S ribosomal protein L4 [Lachnospiraceae oral taxon 107 str.
F0167]
gi|400369151|gb|EJP22154.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium ICM7]
gi|404344090|gb|EJZ70449.1| 50S ribosomal protein L4 [Clostridiales bacterium OBRC5-5]
Length = 206
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 ISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ++GG + P PR + I LNKK +R+ LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V +D + KTK + N + K +++C
Sbjct: 124 IVVDDFAMSEIKTKKMQQTLNNLNVKKALVVC 155
>gi|199598833|ref|ZP_03212244.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001]
gi|258540678|ref|YP_003175177.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus Lc 705]
gi|418072341|ref|ZP_12709613.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus R0011]
gi|421770009|ref|ZP_16206712.1| LSU ribosomal protein L4p (L1e) [Lactobacillus rhamnosus LRHMDP2]
gi|421773264|ref|ZP_16209911.1| LSU ribosomal protein L4p (L1e) [Lactobacillus rhamnosus LRHMDP3]
gi|423078543|ref|ZP_17067223.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus ATCC 21052]
gi|199590245|gb|EDY98340.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus HN001]
gi|257152354|emb|CAR91326.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus Lc 705]
gi|357537592|gb|EHJ21616.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus R0011]
gi|357550574|gb|EHJ32387.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus ATCC 21052]
gi|411182170|gb|EKS49323.1| LSU ribosomal protein L4p (L1e) [Lactobacillus rhamnosus LRHMDP3]
gi|411183056|gb|EKS50197.1| LSU ribosomal protein L4p (L1e) [Lactobacillus rhamnosus LRHMDP2]
Length = 207
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + +G L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDGDLVVVDGLSFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ KTK +N + ++ K V+L DG + K A +NL V V+P+
Sbjct: 133 APKTKAFLNVLDGLKVNDKALVVLEDGNDVAAK---AARNLPNVKVVPA 178
>gi|392392082|ref|YP_006428684.1| 50S ribosomal protein L4 [Desulfitobacterium dehalogenans ATCC
51507]
gi|390523160|gb|AFL98890.1| 50S ribosomal protein L4, bacterial/organelle [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 207
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 109/196 (55%), Gaps = 8/196 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H+ V QLA +++GTHST EV G G+K
Sbjct: 4 VQVVNMQGSSVGELELNEYVFGIEPNIHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GPKPR + L KKVRRL L+ ALS++ E KL
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V EDL + KT+ +V + +KK L+ I E ++ + +N+ V++
Sbjct: 124 IVLEDLSLNEAKTREMVKVLQALNVSKKALIVTDEFI-ETIERSARNIVG-------VKT 175
Query: 281 TTQSFLIYYYFLDFDF 296
T + Y L+ D
Sbjct: 176 TAVEGMNVYDLLNSDV 191
>gi|149922210|ref|ZP_01910648.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1]
gi|149816950|gb|EDM76435.1| 50S ribosomal protein L4 [Plesiocystis pacifica SIR-1]
Length = 218
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + D + ++ +VF +++ ++ VVRWQ AK++ GT TK SEV GT K
Sbjct: 4 LNVKDLEGNDVAEIEVSDEVFAAEVKEHLLWEVVRWQRAKKRAGTAKTKERSEVHGTRSK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG ARHG+ R FRGG +HGP+PR + +NKK R L+ ALS RA+EG L
Sbjct: 64 MYRQKGTGNARHGSRRVNVFRGGGQVHGPRPRDYTFSVNKKARAGALRSALSLRASEGNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGG 255
+V D EVP KT+ + ++ N K LL DGG
Sbjct: 124 VVIRDFEVPDAKTRNLAAALGKL-NAPKSLLVDGG 157
>gi|89893218|ref|YP_516705.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51]
gi|423073127|ref|ZP_17061870.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense DP7]
gi|122483925|sp|Q250N1.1|RL4_DESHY RecName: Full=50S ribosomal protein L4
gi|89332666|dbj|BAE82261.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense Y51]
gi|361855957|gb|EHL07891.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense DP7]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H+ V QLA +++GTHST EV G G+K
Sbjct: 4 VQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GPKPR + L KKVRRL L+ ALS++ E KL
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V EDL + KT+ +V + +KK L+
Sbjct: 124 IVLEDLSLNEAKTREMVKVLQALNVSKKALIV 155
>gi|83941499|ref|ZP_00953961.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36]
gi|83847319|gb|EAP85194.1| 50S ribosomal protein L4 [Sulfitobacter sp. EE-36]
Length = 205
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ QQGTH KT SEVS + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FR G GP PRSH L KK R+LGL+ ALS++A G L++ +D+ KT +
Sbjct: 82 FRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTGNLVIIDDV-TSDGKTAALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ K+ L+ DG ++E A +N+ +++LP++
Sbjct: 141 VKNL-GWKRALIIDGASVNENFLQAARNIEGLDILPTM 177
>gi|258509481|ref|YP_003172232.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG]
gi|385829115|ref|YP_005866887.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG]
gi|257149408|emb|CAR88381.1| LSU/50S ribosomal protein L4P [Lactobacillus rhamnosus GG]
gi|259650760|dbj|BAI42922.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus GG]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 103/169 (60%), Gaps = 5/169 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + +G L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDGDLVVVDGLSFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ KTK +N + ++ K V+L DG + K A +NL V V+P+
Sbjct: 133 APKTKAFLNVLDGIKVNDKALVVLEDGNDVAAK---AARNLPNVKVVPA 178
>gi|229917357|ref|YP_002886003.1| 50S ribosomal protein L4 [Exiguobacterium sp. AT1b]
gi|259491559|sp|C4KZP5.1|RL4_EXISA RecName: Full=50S ribosomal protein L4
gi|229468786|gb|ACQ70558.1| ribosomal protein L4/L1e [Exiguobacterium sp. AT1b]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 100/163 (61%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA +F + + +++ + Q A R+QGTH TK SEV G G+KPW+QKGTGRAR
Sbjct: 15 GEIELAEAIFGIEPNESVLYDAIVMQQASRRQGTHDTKGRSEVRGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG T+ GP PRS++ KL KKVRRL L ALS++ +++V E L +
Sbjct: 75 QGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLALLSALSSKVQNNEIIVLEGLAFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK + N + +K L+ +E + LA +N+ V V+
Sbjct: 135 KTKDMAAVLNSLSVERKALVVTADY-NETIALAARNIPGVTVI 176
>gi|153952862|ref|YP_001393627.1| 50S ribosomal protein L4 [Clostridium kluyveri DSM 555]
gi|219853527|ref|YP_002470649.1| hypothetical protein CKR_0184 [Clostridium kluyveri NBRC 12016]
gi|189029496|sp|A5N4P8.1|RL4_CLOK5 RecName: Full=50S ribosomal protein L4
gi|254803727|sp|B9DYB0.1|RL4_CLOK1 RecName: Full=50S ribosomal protein L4
gi|146345743|gb|EDK32279.1| RplD [Clostridium kluyveri DSM 555]
gi|219567251|dbj|BAH05235.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 206
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 115/198 (58%), Gaps = 12/198 (6%)
Query: 101 IPVTNFFNEDKGFMV---LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P+ FN++ + L+ VF V + + ++H+VV LA ++QGT S KT +EVSG
Sbjct: 1 MPIVGLFNKEGQKITDFELSDKVFGVEVNQYVMHQVVVALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + KPRS+ I + K RRL +K ALS++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRSPQWIHGGVVFAVKPRSYRISVPKSARRLAMKSALSSKVEE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+++V E LE+ + KTK +V + E KK L+ ++ + + +N+ V+V+P
Sbjct: 121 NQIVVLESLEMDTPKTKEVVKILDAFE-AKKTLIVTAES-NQNVYKSARNIQGVSVIPV- 177
Query: 278 VRSTTQSFLIYYYFLDFD 295
+ L Y L FD
Sbjct: 178 ------NNLNVYDLLKFD 189
>gi|403385667|ref|ZP_10927724.1| 50S ribosomal protein L4 [Kurthia sp. JC30]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ + Q A +QGTH TK SEVSG G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNESVLFDAIVAQRASLRQGTHKTKGRSEVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL KKVRRL LK ALS + AE +V + L + +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLALKSALSTKVAETNFVVVDALTLNAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK V + K L+ ++E + L+ +N+ V VL
Sbjct: 135 KTKDFVKVLADLSVESKSLIVTAD-VNENVALSARNIPGVTVL 176
>gi|260655382|ref|ZP_05860870.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33
E1]
gi|424845194|ref|ZP_18269805.1| 50S ribosomal protein L4, bacterial/organelle [Jonquetella anthropi
DSM 22815]
gi|260629830|gb|EEX48024.1| ribosomal protein L4/L1 family protein [Jonquetella anthropi E3_33
E1]
gi|363986632|gb|EHM13462.1| 50S ribosomal protein L4, bacterial/organelle [Jonquetella anthropi
DSM 22815]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 101/175 (57%), Gaps = 2/175 (1%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
VI + NF E G + L+ VF VP IH+VV Q A +QGT K EV G G+
Sbjct: 3 VIKILNFAGEVVGDLELSDAVFGVPFHSSAIHQVVVAQQANARQGTACAKDRGEVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQK TGRAR G++R P + GG +HGPKPR + +K+NKKVR L ++ ALS RA E +
Sbjct: 63 KPWRQKHTGRARAGSIRSPLWAGGGVVHGPKPRDYFLKVNKKVRALAMRSALSVRAGESR 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L E + + TK ++++ + K +++ D +E + + N+ V VL
Sbjct: 123 LFAVEGFSLEAPSTKKMLSFLAAVGARKPLIVLD--SRNENVIRSAANIQGVKVL 175
>gi|254449666|ref|ZP_05063103.1| ribosomal protein L4/L1 family [Octadecabacter arcticus 238]
gi|198264072|gb|EDY88342.1| ribosomal protein L4/L1 family [Octadecabacter arcticus 238]
Length = 205
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 97/164 (59%), Gaps = 2/164 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ Q GTH KT SEV + KK +RQKGTG AR
Sbjct: 14 GSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FRGG GP PRSH +L KK R+LGL+ ALSA+ A G+L++ + +++
Sbjct: 74 HGARSAPIFRGGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKVAAGELVIVDSIDMKDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
KT + + K+ L+ D ++E +A +N+ +N LP
Sbjct: 134 KTSALAKQVGAL-GWKRCLIID-ATVNENFAVAARNITTINALP 175
>gi|16077185|ref|NP_387998.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
168]
gi|221307929|ref|ZP_03589776.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
168]
gi|221312250|ref|ZP_03594055.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221317184|ref|ZP_03598478.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221321447|ref|ZP_03602741.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
SMY]
gi|321313788|ref|YP_004206075.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5]
gi|384173777|ref|YP_005555162.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|402774359|ref|YP_006628303.1| 50S ribosomal protein L4 [Bacillus subtilis QB928]
gi|428277533|ref|YP_005559268.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. natto BEST195]
gi|452916571|ref|ZP_21965193.1| 50S ribosomal protein L4 [Bacillus subtilis MB73/2]
gi|1173050|sp|P42921.1|RL4_BACSU RecName: Full=50S ribosomal protein L4
gi|786154|dbj|BAA08832.1| ribosomal protein L4 [Bacillus subtilis]
gi|1165304|gb|AAC45957.1| L4 [Bacillus subtilis]
gi|2632384|emb|CAB11893.1| ribosomal protein L4 [Bacillus subtilis subsp. subtilis str. 168]
gi|291482490|dbj|BAI83565.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. natto BEST195]
gi|320020062|gb|ADV95048.1| 50S ribosomal protein L4 [Bacillus subtilis BSn5]
gi|349593001|gb|AEP89188.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|402479545|gb|AFQ56054.1| Ribosomal protein L4 [Bacillus subtilis QB928]
gi|407955807|dbj|BAM49047.1| 50S ribosomal protein L4 [Bacillus subtilis BEST7613]
gi|407963078|dbj|BAM56317.1| 50S ribosomal protein L4 [Bacillus subtilis BEST7003]
gi|452114480|gb|EME04880.1| 50S ribosomal protein L4 [Bacillus subtilis MB73/2]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADA-NEAVALSARNIPGVTVVEA 178
>gi|300857245|ref|YP_003782229.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528]
gi|300437360|gb|ADK17127.1| 50S ribosomal protein L4 [Clostridium ljungdahlii DSM 13528]
Length = 206
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 112/179 (62%), Gaps = 7/179 (3%)
Query: 101 IPVTNFFNEDKGFMV----LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+P FN++ G V L+ VF V + ++ +H+VV LA ++QGT S KT +EVSG
Sbjct: 1 MPKVGLFNKE-GQKVEDFELSDKVFGVEVNENAVHQVVVALLANKRQGTQSAKTRAEVSG 59
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
G KPWRQKGTGRAR G++R PQ+ G + KPR + I L K V+R+ +K ALS++ A
Sbjct: 60 GGIKPWRQKGTGRARQGSIRAPQWIHGGIVFAVKPRDYRISLTKSVKRVAMKSALSSKVA 119
Query: 217 EGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ +++V E+LE+ + KTK IV + N KK L+ ++ + ++ +N+ V+V+P
Sbjct: 120 DNEMVVLENLELETPKTKEIVKMLDAF-NAKKALIVTAES-NKNVYVSGRNIQGVSVIP 176
>gi|323141357|ref|ZP_08076248.1| 50S ribosomal protein L4 [Phascolarctobacterium succinatutens YIT
12067]
gi|322414106|gb|EFY04934.1| 50S ribosomal protein L4 [Phascolarctobacterium succinatutens YIT
12067]
Length = 211
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 107/179 (59%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF + ++H+ V QLA ++QGT +TKT + V G G+K
Sbjct: 7 LSVYDLSGAQTGEIELNDSVFGAEFNEAVVHQAVVMQLANQRQGTSATKTRAMVRGGGRK 66
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T GP+PRS+A K+ +K RRL L ALSA+ A G+L
Sbjct: 67 PWKQKGTGRARCGSNRSPVWVGGGTTFGPQPRSYAKKMPRKARRLALCCALSAKVAAGEL 126
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME--NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V E L + KTK + + E +TK +L+ DG +E + L+ +N+ V + ++
Sbjct: 127 VVVEGLAFDAPKTKQVASLLKAFEAVDTKALLITDGS--NENVALSARNMPKVTTITNM 183
>gi|296333114|ref|ZP_06875568.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305672816|ref|YP_003864487.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str.
W23]
gi|350264216|ref|YP_004875523.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|386756697|ref|YP_006229913.1| 50S ribosomal protein L4 [Bacillus sp. JS]
gi|296149730|gb|EFG90625.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305411059|gb|ADM36177.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii str.
W23]
gi|349597103|gb|AEP84891.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|384929979|gb|AFI26657.1| 50S ribosomal protein L4 [Bacillus sp. JS]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADA-NEAVALSARNIPGVTVVEA 178
>gi|332982708|ref|YP_004464149.1| 50S ribosomal protein L4P [Mahella australiensis 50-1 BON]
gi|332700386|gb|AEE97327.1| LSU ribosomal protein L4P [Mahella australiensis 50-1 BON]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 97/152 (63%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L ++F + + + +H+VV+ QLA ++QGT S KT EV G G+K
Sbjct: 4 VPVYNIEGQQVGEIELKDEIFGIEVNEAALHQVVQMQLANKRQGTQSAKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + PKPR ++ L KK+RRL +K AL+++ + +L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYSYTLPKKLRRLAMKSALTSKVRDNEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V +++ + KTK + ++ +KVL+
Sbjct: 124 IVLDNISIEQPKTKEMFRILRNLKADRKVLMV 155
>gi|257064319|ref|YP_003143991.1| 50S ribosomal protein L4 [Slackia heliotrinireducens DSM 20476]
gi|256791972|gb|ACV22642.1| ribosomal protein L4 [Slackia heliotrinireducens DSM 20476]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 88/139 (63%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + N E + L VF + ++H VVR Q A +QGTH TKT EV G GKK
Sbjct: 4 IEIKNASGEKASEVELESAVFGIEPNVHVMHTVVRSQQAAMRQGTHDTKTRGEVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR GT+R PQ+ GG T+ GP PRS+A ++N+K +L ++ ALSA+ A+G+L
Sbjct: 64 PWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNRKEVKLAMRSALSAKLADGQL 123
Query: 221 LVFEDLEVPSHKTKFIVNY 239
+V ED + TK V +
Sbjct: 124 MVVEDFKFEKPCTKEAVAF 142
>gi|315652353|ref|ZP_07905345.1| 50S ribosomal protein L4 [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485476|gb|EFU75866.1| 50S ribosomal protein L4 [Lachnoanaerobaculum saburreum DSM 3986]
Length = 206
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 ISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ++GG + P PR + I LNKK +R+ LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V +D + KTK + N + K +++C
Sbjct: 124 IVVDDFSMGEIKTKKMQQTLNNLNVKKALVVC 155
>gi|163745538|ref|ZP_02152898.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45]
gi|161382356|gb|EDQ06765.1| 50S ribosomal protein L4 [Oceanibulbus indolifex HEL-45]
Length = 205
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 101/179 (56%), Gaps = 2/179 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L +F + R DI+HRVVRWQ QQGTH KT SE S +
Sbjct: 1 MKLDVIKLDGGNAGSVDLDEALFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSETSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FR G GP PRSH +L KK R+LGL+ ALSA+A G
Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGIYKGPTPRSHGHELTKKFRKLGLRHALSAKAKAG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L++ D KT + + + K+ L+ DG ++E A +N+ +++LPS+
Sbjct: 121 SLVII-DEATSEGKTAALAKQVSNL-GWKRTLVIDGASVNENFAQAARNIEGLDILPSM 177
>gi|205372068|ref|ZP_03224885.1| 50S ribosomal protein L4 [Bacillus coahuilensis m4-4]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + N+ G + L +F + + ++ V Q A +QG H K SEV+G
Sbjct: 1 MPKVSLLNQTGSQVGDIELNDSIFGIEPNQSVMFDAVIMQRASLRQGNHKVKGRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS + E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSTKVVE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V + L + KTK V + KVL+ G + E + L+ +N+ V V+PS
Sbjct: 121 ENIIVLDQLTFAAPKTKEFVAVLKNLSLDNKVLVVTDG-LDENVALSARNIPGVTVVPS 178
>gi|297588192|ref|ZP_06946836.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC
53516]
gi|297574881|gb|EFH93601.1| ribosomal protein L4/L1 family protein [Finegoldia magna ATCC
53516]
Length = 207
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 95/151 (62%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E+ G + L +F V + + +++ VVR QLA ++QGT S KT SEV G GKK
Sbjct: 4 VQILNQQGENVGELELNEAIFGVDVNEHVVYEVVRNQLANKRQGTQSAKTRSEVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG + PKPR ++ + KKVRRL +K L+ + + ++
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTDKVNDNEM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLL 251
+V + L + + TK V ++ KK L+
Sbjct: 124 IVLDKLSLDAISTKKAVEVLKNIKADKKALV 154
>gi|358465881|ref|ZP_09175766.1| hypothetical protein HMPREF9093_00226 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069586|gb|EHI79479.1| hypothetical protein HMPREF9093_00226 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 209
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
V+ V N + G + + VF + K ++H V+ +LA +QGT STKT + V G G+
Sbjct: 3 VLNVYNLAGDQTGTVEVNDAVFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KP++QKGTGRAR G++R P GG GP PRS+ K+NKKVR L L+ ALSA+ A G
Sbjct: 63 KPFKQKGTGRARQGSIRAPHMVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
+LV + + + KTK IVN N+++ +K L G I + L L+ +NL +L
Sbjct: 123 VLVLDYDGIDTPKTKVIVNLVNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|222099968|ref|YP_002534536.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359]
gi|254803761|sp|B9K887.1|RL4_THENN RecName: Full=50S ribosomal protein L4
gi|221572358|gb|ACM23170.1| 50S ribosomal protein L4 [Thermotoga neapolitana DSM 4359]
Length = 235
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 109/179 (60%), Gaps = 7/179 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + ++ VF++ D++ R V QL+ R+ GT STKT EVSG G+K
Sbjct: 4 VDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW QK TGRARHG++R P +R G HGPKPR + KLNKK++RL L+ ALS + E KL
Sbjct: 64 PWPQKHTGRARHGSIRSPIWRHGGVAHGPKPRDWSKKLNKKMKRLALRSALSVKYRENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLC----DGGCIHEKLKLATQNLHYVNVL 274
LV EDL++ KTK + ++ KK L+ + G ++ +KL+ +NL V V+
Sbjct: 124 LVLEDLKLERPKTKSLKEILQNLDLADKKALIVLPWKEEGYVN--VKLSGKNLPNVKVI 180
>gi|341614504|ref|ZP_08701373.1| 50S ribosomal protein L4 [Citromicrobium sp. JLT1363]
Length = 208
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 100/166 (60%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF V R DI+HRVV WQL R+ T+ S+V+ TGKK RQKG+G AR
Sbjct: 15 GDIELNDAVFGVEPRTDILHRVVTWQLWNRRATARPTRERSDVARTGKKFGRQKGSGGAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P F GG HG + R + LNKK+R LGLK+ALS +A +G L+V + LE+
Sbjct: 75 HGDRGAPIFIGGGKAHGARKRDFNMSLNKKIRSLGLKMALSTKAKDG-LVVVDSLELEDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK + ++++ KVL+ DG ++E A NL VNV+P++
Sbjct: 134 KTKALKGHFDKAGWNGKVLVIDGESVNEGFARAAGNLPGVNVMPAI 179
>gi|222529729|ref|YP_002573611.1| 50S ribosomal protein L4 [Caldicellulosiruptor bescii DSM 6725]
gi|254803711|sp|B9MKI0.1|RL4_ANATD RecName: Full=50S ribosomal protein L4
gi|222456576|gb|ACM60838.1| ribosomal protein L4/L1e [Caldicellulosiruptor bescii DSM 6725]
Length = 208
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 4/176 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I L KKV+RL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V + ++ +KTK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEK--NEYLQKSTKNIPEVKTL 177
>gi|66472248|ref|NP_001018572.1| 39S ribosomal protein L4, mitochondrial [Danio rerio]
gi|82192851|sp|Q503X2.1|RM04_DANRE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|63102139|gb|AAH95145.1| Zgc:110034 [Danio rerio]
Length = 302
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF VPIR DI+H V WQ ++ + KT +EV G G+KPW+QK TGRAR
Sbjct: 87 GVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKTRAEVRGGGRKPWQQKRTGRAR 146
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG +HGP+ P S+ L KVR GLKIALSA+ A+ L + + LE+P+
Sbjct: 147 HGSIRSPLWRGGGIIHGPRGPTSYYYMLPMKVRVQGLKIALSAKLAQDYLHIVDSLEIPT 206
Query: 231 HKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSV 277
+++ + + VL+ D G + + AT++L VN++P++
Sbjct: 207 PDPQYLQDLVKHRQWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPAL 254
>gi|410929341|ref|XP_003978058.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Takifugu
rubripes]
Length = 302
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 125/244 (51%), Gaps = 30/244 (12%)
Query: 60 RKFSTTILTPDSSEGAFPSDLLLKKTVLTP--------------------DITIGLH--- 96
++F++T+ + E A P++LLL ++ P D I H
Sbjct: 15 QRFASTL----AGESALPTNLLLPTNLVDPARLKRPSPPADCPLPVLRKCDAAIPAHLSH 70
Query: 97 -QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
Q V + +E G L DVF VP R DI+H V WQ ++ TK SEV
Sbjct: 71 IQTWVETLEKEDSEPLGLAHLHPDVFAVPPRLDILHMVEIWQRNFKRISHAHTKVRSEVR 130
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSAR 214
G GKKPWRQKG+GRARHG++R P +RGG HGP+ P S+ L KVR GLK+ALS++
Sbjct: 131 GGGKKPWRQKGSGRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVQGLKVALSSK 190
Query: 215 AAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNV 273
++ L V + L +P+ +++ + + VL+ D E + AT NL VN+
Sbjct: 191 MSQSYLHVVDSLAIPTPDPQYLRDLIGHRHWGQSVLIVDVSEEFPENILQATANLKTVNI 250
Query: 274 LPSV 277
+P++
Sbjct: 251 IPAI 254
>gi|210623189|ref|ZP_03293628.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275]
gi|210153726|gb|EEA84732.1| hypothetical protein CLOHIR_01578 [Clostridium hiranonis DSM 13275]
Length = 207
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 95/151 (62%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L +F+V + + +++ V+ QLA R+QGT S KT +EV G G+K
Sbjct: 4 INVMNINGQNVGEIELCDSIFNVEVNEHVLYEAVKCQLANRRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKCALSSKVQNNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLL 251
+V + L + + KTK V N ++ ++K L+
Sbjct: 124 IVLDALTMDAPKTKEFVAILNNIKASRKALV 154
>gi|374709481|ref|ZP_09713915.1| 50S ribosomal protein L4 [Sporolactobacillus inulinus CASD]
Length = 207
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 101/163 (61%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA VF + + +I++ V Q A +QGTH+ K S V G G+KPW+QKGTGRAR
Sbjct: 15 GAVELADAVFGIEPNEHVIYQAVVMQQASLRQGTHAVKNRSAVRGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG T+ GP PRS++ KL KKVRRL ++ LS +A E L+V + L++ +
Sbjct: 75 QGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIRSVLSDKAGENNLIVLDALKIEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK I + + +K L+ I E L+++NL V VL
Sbjct: 135 KTKEITALLSNLSVAEKALIVTND-IDETAVLSSRNLPGVKVL 176
>gi|312127227|ref|YP_003992101.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis
108]
gi|312793938|ref|YP_004026861.1| 50S ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii
177R1B]
gi|344996424|ref|YP_004798767.1| 50S ribosomal protein L4 [Caldicellulosiruptor lactoaceticus 6A]
gi|311777246|gb|ADQ06732.1| ribosomal protein L4/L1e [Caldicellulosiruptor hydrothermalis 108]
gi|312181078|gb|ADQ41248.1| ribosomal protein L4/L1e [Caldicellulosiruptor kristjanssonii
177R1B]
gi|343964643|gb|AEM73790.1| ribosomal protein L4/L1e [Caldicellulosiruptor lactoaceticus 6A]
Length = 208
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 106/176 (60%), Gaps = 4/176 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV N + G + L +F+VPI ++H+ V LA R+QGT + KT +EV G G+K
Sbjct: 4 VPVYNIEGQQIGEIELNDSIFNVPINTHVLHQAVVAHLANRRQGTFAAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +R G + KPR +I L KKV+RL LK ALS++ E L
Sbjct: 64 PWRQKGTGRARQGSIRAPTWRKGGVVFAKKPRDFSIDLPKKVKRLALKCALSSKVKENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V + ++ +KTK ++ +EN K +++ +E L+ +T+N+ V L
Sbjct: 124 IVLDRWDMNQYKTKEVLRVLKNLGLENQKALIVIPEK--NEYLQKSTRNIPEVKTL 177
>gi|419719246|ref|ZP_14246532.1| 50S ribosomal protein L4 [Lachnoanaerobaculum saburreum F0468]
gi|383304572|gb|EIC95971.1| 50S ribosomal protein L4 [Lachnoanaerobaculum saburreum F0468]
Length = 206
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 ISVFNIEGKEVGSIELNDAVFGVNVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ++GG + P PR + I LNKK +R+ LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTINLNKKEKRIALKSALTSRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V +D + KTK + N + K +++C
Sbjct: 124 IVVDDFAMGEIKTKKMQQTLNNLNVKKALVVC 155
>gi|295093644|emb|CBK82735.1| LSU ribosomal protein L4P [Coprococcus sp. ART55/1]
Length = 206
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 81/114 (71%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V I + I+H+ V QLA +QGT S KT SEVSG G+KPWRQKGTG AR G+ R PQ
Sbjct: 23 VFGVEINEHIMHKAVVGQLANNRQGTQSAKTRSEVSGGGRKPWRQKGTGHARQGSTRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
+ GG + PKPR +++K+NKK ++L +K ALS++ AE KL+V + L++ KT
Sbjct: 83 WTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSSKVAENKLVVVDKLDLQEAKT 136
>gi|229552709|ref|ZP_04441434.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1]
gi|385836316|ref|YP_005874091.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus ATCC 8530]
gi|229313915|gb|EEN79888.1| ribosomal protein L4 [Lactobacillus rhamnosus LMS2-1]
gi|355395808|gb|AER65238.1| 50S ribosomal protein L4 [Lactobacillus rhamnosus ATCC 8530]
Length = 207
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + +G L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDGDLVVVDGLSFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPS 276
KTK +N + ++ K V+L DG + K A +NL V V+P+
Sbjct: 133 DPKTKAFLNVLDGLKVNDKALVVLEDGNDVAAK---AARNLPNVKVVPA 178
>gi|298531084|ref|ZP_07018485.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1]
gi|298509107|gb|EFI33012.1| ribosomal protein L4/L1e [Desulfonatronospira thiodismutans ASO3-1]
Length = 206
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 112/185 (60%), Gaps = 9/185 (4%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
N++ G + L +VF V ++ +++H+ VR A + GT K + +SG G+KPWRQKGT
Sbjct: 11 NQEVGEIDLQENVFSVSVKPELMHQAVRAHRAAVRSGTVGVKNRALISGGGRKPWRQKGT 70
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
GRAR GT R P +RGG +HGPK R ++IKLNKKVRRL LK+ALS + A+ KL + ++L+
Sbjct: 71 GRARAGTGRSPLWRGGAVIHGPKARDYSIKLNKKVRRLALKMALSTKYAQDKLQILDNLD 130
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLI 287
+ +TK V+ N + KK L+ + L+L+ +N+ V V+ TQ +
Sbjct: 131 LSRIRTKDFVSIKNNL-GLKKPLIVTAEKSNN-LELSARNVPGVEVI-------TQDSIN 181
Query: 288 YYYFL 292
Y L
Sbjct: 182 VYEVL 186
>gi|83854977|ref|ZP_00948507.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1]
gi|83842820|gb|EAP81987.1| 50S ribosomal protein L4 [Sulfitobacter sp. NAS-14.1]
Length = 205
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ QQGTH KT SEVS + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQQGTHKVKTRSEVSYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FR G GP PRSH L KK R+LGL+ ALS++A G L++ +D KT +
Sbjct: 82 FRSGGIYKGPTPRSHGHDLTKKFRKLGLRHALSSKAKTGNLVIIDD-ATSDGKTAALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ K+ L+ DG ++E A +N+ +++LP++
Sbjct: 141 VKNL-GWKRALIIDGASVNENFLQAARNIEGLDILPTM 177
>gi|323483300|ref|ZP_08088690.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum
WAL-14163]
gi|323691202|ref|ZP_08105478.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum
WAL-14673]
gi|355626527|ref|ZP_09048802.1| 50S ribosomal protein L4 [Clostridium sp. 7_3_54FAA]
gi|323403398|gb|EGA95706.1| hypothetical protein HMPREF9474_00439 [Clostridium symbiosum
WAL-14163]
gi|323504721|gb|EGB20507.1| ribosomal protein L4/L1 family protein [Clostridium symbiosum
WAL-14673]
gi|354820847|gb|EHF05252.1| 50S ribosomal protein L4 [Clostridium sp. 7_3_54FAA]
Length = 206
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 91/156 (58%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGNEVGTLELNDSVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR + I+LNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGC 256
+V + + KTK + N ++ K +++ D C
Sbjct: 124 IVVDAMNFDEIKTKKFQSVMNNLKVNKALVVLDDTC 159
>gi|146181037|ref|XP_001022027.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila]
gi|146144303|gb|EAS01782.2| ribosomal protein L4/L1 family protein [Tetrahymena thermophila
SB210]
Length = 358
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 101/178 (56%), Gaps = 5/178 (2%)
Query: 97 QDLVIPVTNFFNED----KGFMV-LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTI 151
Q L +PV F E+ G V L D+F+VP+R+DI+H V W+ + + TH TKT
Sbjct: 69 QPLRVPVLKFLAENGQAYTGKTVDLDHDIFNVPLRRDIVHSYVLWRQNRDEIKTHITKTK 128
Query: 152 SEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIAL 211
VSG+GKKP+ QKGTG+AR G R P + G HG KPR LNKK+R LK+ L
Sbjct: 129 GTVSGSGKKPYAQKGTGKARMGNKRAPGRKKGGKAHGAKPRILRYPLNKKIRLQALKVVL 188
Query: 212 SARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLH 269
SA+ AEGKL + E +V KT+ I +M+ ++L+ I +LA QN+
Sbjct: 189 SAKLAEGKLRIIETEQVDEPKTRAIAKMLEKMDKRSRILIVHPYQIDTNFELAHQNIQ 246
>gi|355681921|ref|ZP_09062209.1| 50S ribosomal protein L4 [Clostridium citroniae WAL-17108]
gi|354811332|gb|EHE95965.1| 50S ribosomal protein L4 [Clostridium citroniae WAL-17108]
Length = 206
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I+LNKK +R LK AL++R + K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVQDNKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCD 253
+V ++L++ KTK N + ++ +K V+L D
Sbjct: 124 IVLDELKLDEIKTKKFQNVMDNLKVSKALVVLAD 157
>gi|220928208|ref|YP_002505117.1| 50S ribosomal protein L4 [Clostridium cellulolyticum H10]
gi|254803726|sp|B8I7Y0.1|RL4_CLOCE RecName: Full=50S ribosomal protein L4
gi|219998536|gb|ACL75137.1| ribosomal protein L4/L1e [Clostridium cellulolyticum H10]
Length = 207
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 112/183 (61%), Gaps = 11/183 (6%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N E G + L+ +VF + KD +H VV QLA R+QGT STKT SEV G
Sbjct: 1 MPKVDLYNMKGEVVGDIQLSDNVFGTDVNKDALHAVVVNQLANRRQGTQSTKTKSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R Q+ G + GPKPRS+ L KKV+R+ +K AL+++ +
Sbjct: 61 GKKPWRQKGTGRARQGSIRSAQWVKGGIVLGPKPRSYRYTLPKKVKRIAMKSALTSKVSG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNL-----HYV 271
++ V + L + + KTK +V N ++ ++ +L+ D +E + + +N+ YV
Sbjct: 121 NEIFVLDALALDAIKTKSMVGVLNNLKVDSSALLVID--SKNENIVKSARNIPGIKTAYV 178
Query: 272 NVL 274
N L
Sbjct: 179 NTL 181
>gi|379707020|ref|YP_005262225.1| 50S ribosomal protein L4 [Nocardia cyriacigeorgica GUH-2]
gi|374844519|emb|CCF61581.1| 50S ribosomal protein L4 [Nocardia cyriacigeorgica GUH-2]
Length = 226
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 106/178 (59%), Gaps = 6/178 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+L +PV + G + L ++FD ++H+VV QLA +QGTHSTKT EV G
Sbjct: 11 NLTLPVKELGGKTNGTVELPAEIFDATANIALMHQVVVAQLAAARQGTHSTKTRGEVRGG 70
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKP+RQKGTGRAR G+ R PQF GG T+HGPKPR ++ + KK+ R L+ ALS RA
Sbjct: 71 GKKPYRQKGTGRARQGSTRAPQFAGGGTVHGPKPRDYSQRTPKKMIRAALRGALSDRARN 130
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
++ V +L + PS TK + +++ + KK L+ G K + QNL +V+
Sbjct: 131 ERIHVISELVAGQTPS--TKTAKTFLSELSDRKKFLVVLGREDIAAWK-SVQNLEFVH 185
>gi|414075115|ref|YP_007000332.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413975035|gb|AFW92499.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 208
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L VF + + ++ VV Q A +QGTH+ K S VSG GKKP
Sbjct: 5 SLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G+ R PQ+RGG T+ GP PRS+A KL +KVR+L LK S + A+GKL+
Sbjct: 65 WRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVADGKLI 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
+ L+ + KT + + +KVL+ +E +L+ +NL V V
Sbjct: 125 AVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKV 176
>gi|116513053|ref|YP_811960.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris SK11]
gi|385839408|ref|YP_005877038.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris A76]
gi|123125252|sp|Q02W25.1|RL4_LACLS RecName: Full=50S ribosomal protein L4
gi|116108707|gb|ABJ73847.1| LSU ribosomal protein L4P [Lactococcus lactis subsp. cremoris SK11]
gi|358750636|gb|AEU41615.1| LSU ribosomal protein L4p (L1e) [Lactococcus lactis subsp. cremoris
A76]
Length = 208
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L VF + + ++ VV Q A +QGTH+ K S VSG GKKP
Sbjct: 5 SLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G+ R PQ+RGG T+ GP PRS+A KL +KVR+L LK S + A+GKL+
Sbjct: 65 WRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVADGKLI 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
+ L+ + KT + + +KVL+ +E +L+ +NL V V
Sbjct: 125 AVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKV 176
>gi|393770434|ref|ZP_10358930.1| 50S ribosomal protein L4 [Methylobacterium sp. GXF4]
gi|392724114|gb|EIZ81483.1| 50S ribosomal protein L4 [Methylobacterium sp. GXF4]
Length = 206
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 101/175 (57%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT G + L +F + R D++ R+VRWQLAKR+ GTH+ + S+V+ T KK
Sbjct: 3 LDVTTLDGAGAGSVELNETIFGLEPRADLLQRMVRWQLAKRRAGTHAVQNRSDVNRTRKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP R H+ L KKVR L L+ ALSA+A L
Sbjct: 63 LYKQKGTGNARHGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALRHALSAKAKASTL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +D+++ HKTK ++ + +M L+ G + A + + ++VLP
Sbjct: 123 IVVDDIKIEDHKTKGLIERFGKM-GLSNALIIGGAEVDVNFGRAARAIPQIDVLP 176
>gi|336436040|ref|ZP_08615753.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008080|gb|EGN38099.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 1_4_56FAA]
Length = 206
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK ALS+R AE K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALSSRVAENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
+V ++++ KTK N + K +++ + G + ++++ +N+ V
Sbjct: 124 IVVDEIKFDEIKTKKFQEVLNNLNVNKALVVLEDGNTN--VEISARNIANV 172
>gi|399991378|ref|YP_006571618.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|398655933|gb|AFO89899.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 205
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ + +
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAD-SAG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG + E A +N+ +++LP++
Sbjct: 133 KTAALAKQVKDL-GWKRALVIDGASVDEGFARAARNIEGLDILPTM 177
>gi|375310806|ref|ZP_09776071.1| 50S ribosomal protein L4/L1e [Paenibacillus sp. Aloe-11]
gi|390456379|ref|ZP_10241907.1| 50S ribosomal protein L4 [Paenibacillus peoriae KCTC 3763]
gi|375077174|gb|EHS55417.1| 50S ribosomal protein L4/L1e [Paenibacillus sp. Aloe-11]
Length = 207
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + L VF + K ++H V QLA +QGTH K SEV G G+K
Sbjct: 4 VALLNISGSQVGEIELNDAVFGIEPNKHVLHDAVVMQLASLRQGTHKVKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+ GG T+ GP PRS+A KL KKVRRL +K ALS++ E ++
Sbjct: 64 PWKQKGTGRARQGSIRAPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVIENEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + KTK N ++ +K L+
Sbjct: 124 IVLDALTLNGPKTKEFAAILNNLKADRKALIV 155
>gi|119508437|ref|NP_075656.2| 39S ribosomal protein L4, mitochondrial [Mus musculus]
gi|81881827|sp|Q9DCU6.1|RM04_MOUSE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|12832465|dbj|BAB22118.1| unnamed protein product [Mus musculus]
gi|13559359|dbj|BAB40839.1| mitochondrial ribosomal protein L4 (L4mt) [Mus musculus]
gi|37572295|gb|AAH39983.2| Mitochondrial ribosomal protein L4 [Mus musculus]
gi|38511681|gb|AAH61095.1| Mitochondrial ribosomal protein L4 [Mus musculus]
gi|148693202|gb|EDL25149.1| mitochondrial ribosomal protein L4, isoform CRA_c [Mus musculus]
Length = 294
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 9/217 (4%)
Query: 66 ILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPI 125
I P S G D +L+K L + Q V + F E G L DVF
Sbjct: 34 ISEPRDSAGLL--DPVLRKCELRIPVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAP 91
Query: 126 RKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTT 185
R DI+H+V WQ R+ +TKT +EVSG G+KPW+QKG+GRARHG++R P +RGG
Sbjct: 92 RLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGV 151
Query: 186 MHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP+ P S+ L KVR LGLK+AL+ + + L + + LE+P+ +++
Sbjct: 152 AHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRH 211
Query: 245 NTKKVLLCDGGCIHEKLK----LATQNLHYVNVLPSV 277
VLL D HE++ AT L+ N++P+V
Sbjct: 212 WGSSVLLVD--LTHEEMPKNVVAATSGLNSFNLIPAV 246
>gi|400755778|ref|YP_006564146.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10]
gi|398654931|gb|AFO88901.1| 50S ribosomal protein L4 [Phaeobacter gallaeciensis 2.10]
Length = 205
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 98/166 (59%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVVRWQ Q GTH KT SE S + KK +RQKGTG AR
Sbjct: 14 GDIELDAELFGLEPRTDILHRVVRWQRNNAQAGTHKVKTRSETSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG P FR G GP PRSH L KK R+LGL+ ALSA+A G+L+V E+ + +
Sbjct: 74 HGDRNAPIFRKGGIYKGPTPRSHGHDLTKKFRKLGLRHALSAKAKAGELVVIENAD-SAG 132
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + + K+ L+ DG + E A +N+ +++LP++
Sbjct: 133 KTAALAKQVKDL-GWKRALVIDGASVDEGFARAARNIEGLDILPTM 177
>gi|219666491|ref|YP_002456926.1| 50S ribosomal protein L4 [Desulfitobacterium hafniense DCB-2]
gi|254803731|sp|B8G1W7.1|RL4_DESHD RecName: Full=50S ribosomal protein L4
gi|219536751|gb|ACL18490.1| ribosomal protein L4/L1e [Desulfitobacterium hafniense DCB-2]
Length = 207
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 91/152 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H+ V QLA +++GTHST EV G G+K
Sbjct: 4 VQVVNMQGSPVGELELDEYVFGIEPNTHVMHQAVVGQLASQRRGTHSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GPKPR + L KKVRRL L+ ALS++ E KL
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVLFGPKPRKYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V EDL + KT+ +V + KK L+
Sbjct: 124 IVLEDLSLNEAKTREMVKVLQALNVGKKALIV 155
>gi|22478084|gb|AAH37064.1| Mrpl4 protein, partial [Mus musculus]
Length = 306
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 115/217 (52%), Gaps = 9/217 (4%)
Query: 66 ILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPI 125
I P S G D +L+K L + Q V + F E G L DVF
Sbjct: 46 ISEPRDSAGLL--DPVLRKCELRIPVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAP 103
Query: 126 RKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTT 185
R DI+H+V WQ R+ +TKT +EVSG G+KPW+QKG+GRARHG++R P +RGG
Sbjct: 104 RLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGV 163
Query: 186 MHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP+ P S+ L KVR LGLK+AL+ + + L + + LE+P+ +++
Sbjct: 164 AHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRH 223
Query: 245 NTKKVLLCDGGCIHEKLK----LATQNLHYVNVLPSV 277
VLL D HE++ AT L+ N++P+V
Sbjct: 224 WGSSVLLVD--LTHEEMPKNVVAATSGLNSFNLIPAV 258
>gi|226323011|ref|ZP_03798529.1| hypothetical protein COPCOM_00783 [Coprococcus comes ATCC 27758]
gi|225208578|gb|EEG90932.1| 50S ribosomal protein L4 [Coprococcus comes ATCC 27758]
Length = 206
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 102/171 (59%), Gaps = 2/171 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK RR LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKLNKKERRAALKSALTSRVEEKKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
+V +++ KTK + N + +K +++ + G ++ +L+ +N+ V
Sbjct: 124 IVVDEINFDEIKTKKFQDVLNNLSVSKALVVLEDG--NKNAELSARNIADV 172
>gi|15612698|ref|NP_241001.1| 50S ribosomal protein L4 [Bacillus halodurans C-125]
gi|7674304|sp|Q9Z9L3.1|RL4_BACHD RecName: Full=50S ribosomal protein L4
gi|4512405|dbj|BAA75272.1| rplD [Bacillus halodurans]
gi|10172747|dbj|BAB03854.1| 50S ribosomal protein L4 [Bacillus halodurans C-125]
Length = 207
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L+ VF + ++++H V Q A +QGTH TKT SEV G
Sbjct: 1 MPKVALYNQAGSQVGDIELSDAVFGIEPNENVLHDAVVMQQASLRQGTHKTKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ KL KKVRRL +K ALS++
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+++V E L + + KTK + + + + +K L+ ++ + L+ +N+
Sbjct: 121 EEIVVLESLALEAPKTKEMASILSGLSVDRKALVVTADY-NDNVALSARNI 170
>gi|342733057|ref|YP_004771896.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|384456425|ref|YP_005669023.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|417959301|ref|ZP_12602136.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-1]
gi|417965178|ref|ZP_12606767.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-4]
gi|417966153|ref|ZP_12607560.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-5]
gi|417968156|ref|ZP_12609199.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-co]
gi|418015536|ref|ZP_12655101.1| ribosomal protein L4/L1 family protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373310|ref|ZP_12965401.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|342330512|dbj|BAK57154.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345505871|gb|EGX28165.1| ribosomal protein L4/L1 family protein [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984771|dbj|BAK80447.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-mouse-Yit]
gi|380333672|gb|EIA24208.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-1]
gi|380338716|gb|EIA27582.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-4]
gi|380340262|gb|EIA28883.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-co]
gi|380341699|gb|EIA30173.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-mouse-SU]
gi|380343365|gb|EIA31747.1| 50S ribosomal protein L4 [Candidatus Arthromitus sp. SFB-5]
Length = 208
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 104/175 (59%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E G + L ++FDV I+K +H+VV QLA ++QGT S KT SEVSG GKK
Sbjct: 4 VAVYNICGEKVGELELLKEIFDVEIKKYAVHQVVVTQLANKRQGTQSAKTRSEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + PKPR + + ++K +R++ + L+++ + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRMNVSKTLRKVAITSVLTSKVKDENL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
LV + + KTK +V N N + +L ++ + ++ NL V V+P
Sbjct: 124 LVLDSISFNFPKTKEMVKVMNNF-NIESNMLLVTETSNKNVYRSSTNLQNVKVIP 177
>gi|257790718|ref|YP_003181324.1| 50S ribosomal protein L4 [Eggerthella lenta DSM 2243]
gi|317488571|ref|ZP_07947116.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA]
gi|325832045|ref|ZP_08165142.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1]
gi|257474615|gb|ACV54935.1| ribosomal protein L4/L1e [Eggerthella lenta DSM 2243]
gi|316912313|gb|EFV33877.1| ribosomal protein L4/L1 family protein [Eggerthella sp. 1_3_56FAA]
gi|325486366|gb|EGC88818.1| 50S ribosomal protein L4 [Eggerthella sp. HGA1]
Length = 207
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 104/177 (58%), Gaps = 5/177 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + + G LA VF + ++H+VVR Q A +QGTH TKT +V G GKK
Sbjct: 4 IEIKDASGKKAGTADLAASVFGIEPNVPVMHQVVRAQRASWRQGTHDTKTRGQVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR GT+R PQ+ GG T+ GP PRS+A ++N K +L ++ ALSA+ A+G+L
Sbjct: 64 PWRQKGTGRARQGTIRAPQWAGGGTVFGPHPRSYAFRVNNKEVKLAMRSALSAKLADGEL 123
Query: 221 LVFE--DLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
V + + E PS K +E + L+ D ++ L +N+ VN+LP
Sbjct: 124 FVVDAFNFEKPSTKAAVAALKALGLER-RTTLVIDDEDVNTYLSF--RNIPTVNILP 177
>gi|398309219|ref|ZP_10512693.1| 50S ribosomal protein L4 [Bacillus mojavensis RO-H-1]
gi|443634988|ref|ZP_21119159.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443345179|gb|ELS59245.1| 50S ribosomal protein L4 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 207
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADA-NEAVALSARNIPGVTVVEA 178
>gi|336112798|ref|YP_004567565.1| 50S ribosomal protein L4 [Bacillus coagulans 2-6]
gi|335366228|gb|AEH52179.1| ribosomal protein L4/L1e [Bacillus coagulans 2-6]
Length = 207
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 109/180 (60%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSQVGEVELNDAVFGIEPNEHVLFEAIIMQRASLRQGTHKVKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVKE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LV + L + KTK FI N + K +++ DG ++E + L+ +N+ V V+ +
Sbjct: 121 NNILVLDALSFDAPKTKDFIAVLKNLSVDKKALVVTDG--LNENVVLSARNIPGVTVVEA 178
>gi|266620262|ref|ZP_06113197.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM
13479]
gi|288868165|gb|EFD00464.1| ribosomal protein L4/L1 family protein [Clostridium hathewayi DSM
13479]
Length = 206
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 93/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V + + ++H V QLA ++QGT KT +EVSG G+K
Sbjct: 4 VSVYNMEGNEVGTLELNDAVFGVNVNEHLVHLAVVSQLANKRQGTQKAKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ+ GG + P PR + IKLNKK R+L LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIKLNKKERKLALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V ++L+ KTK N N ++ +K +++
Sbjct: 124 IVVDELKFDEIKTKKFQNVLNNLKVSKALVVV 155
>gi|226309809|ref|YP_002769703.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599]
gi|254803719|sp|C0ZII1.1|RL4_BREBN RecName: Full=50S ribosomal protein L4
gi|226092757|dbj|BAH41199.1| 50S ribosomal protein L4 [Brevibacillus brevis NBRC 100599]
Length = 207
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + +++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQTGSQVGEIDLADSVFGIEPNSAVLYDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALS +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSTKVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+LLV E L + KTK + + ++ +KVL+ + + LA++N+
Sbjct: 121 NELLVLEALNFAAPKTKEMTAVLSSLKVDRKVLIVT-SEYDQNVALASRNI 170
>gi|160894755|ref|ZP_02075530.1| hypothetical protein CLOL250_02306 [Clostridium sp. L2-50]
gi|156863689|gb|EDO57120.1| 50S ribosomal protein L4 [Clostridium sp. L2-50]
Length = 206
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 105/180 (58%), Gaps = 9/180 (5%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L VF V I + ++H V Q A +QGT S KT SEVSG G+KPWRQKGTG AR G+
Sbjct: 19 LNDSVFGVEINEHLMHLAVVGQQANSRQGTQSAKTRSEVSGGGRKPWRQKGTGHARQGST 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ GG + PKPR +++K+NKK ++L +K ALSA+ AE KL+V + +E+ KT
Sbjct: 79 RSPQWTGGGVVFAPKPRDYSVKMNKKEKQLAMKSALSAKLAEDKLVVVDKIELEEVKTSV 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFD 295
++ K +++ ++K+ L+ N +P+V + T S + Y L +D
Sbjct: 139 FAKILANLKAPKSLVVTKDK--NDKVVLSANN------IPTVKTTATNSLSV-YDILKYD 189
>gi|334141184|ref|YP_004534390.1| 50S ribosomal protein L4 [Novosphingobium sp. PP1Y]
gi|359398246|ref|ZP_09191270.1| large subunit ribosomal protein L4 [Novosphingobium
pentaromativorans US6-1]
gi|333939214|emb|CCA92572.1| large subunit ribosomal protein L4 [Novosphingobium sp. PP1Y]
gi|357600664|gb|EHJ62359.1| large subunit ribosomal protein L4 [Novosphingobium
pentaromativorans US6-1]
Length = 207
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 98/167 (58%), Gaps = 2/167 (1%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
KG + L+ DVF + R DI+HRVV WQL R+ +T+ S+V+ TGKK RQKG G A
Sbjct: 14 KGDIELSDDVFGLEPRADILHRVVTWQLENRRGIARATRERSDVARTGKKWGRQKGGGTA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG P F GG HG + R I LNKK+R LGLK+ALS++A G LV D
Sbjct: 74 RHGDRAAPVFIGGGKAHGARRREFNISLNKKIRALGLKMALSSKAQNG--LVIVDTLDGE 131
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK + + KKVL+ DG +++ A +N+ VNVLP+V
Sbjct: 132 AKTKALAGQLAKAGFGKKVLVIDGEAVNDNFARAARNIVGVNVLPAV 178
>gi|284049256|ref|YP_003399595.1| 50S ribosomal protein L4 [Acidaminococcus fermentans DSM 20731]
gi|283953477|gb|ADB48280.1| ribosomal protein L4/L1e [Acidaminococcus fermentans DSM 20731]
Length = 209
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 100/159 (62%), Gaps = 4/159 (2%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V + ++H+ V Q A +QGTH+TKT V G G+KPW+QKGTGRAR G++R P
Sbjct: 24 VFGVEFNEAVVHQAVVMQQANERQGTHATKTRGMVRGGGRKPWKQKGTGRARAGSVRSPL 83
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+ GG T+ GP PRSHA + +K RRL ++ ALSA+ AEG L+V ++L + KTK V
Sbjct: 84 WVGGGTVFGPAPRSHAKDMPRKARRLAIRCALSAKVAEGALVVVDNLTFDAPKTKDAVAM 143
Query: 240 YNQME--NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
E + K +++ DG +E ++ +++N+ V L +
Sbjct: 144 LTGFEAADKKALIITDGE--NENVEKSSRNIEKVKALSN 180
>gi|16125498|ref|NP_420062.1| 50S ribosomal protein L4 [Caulobacter crescentus CB15]
gi|221234244|ref|YP_002516680.1| 50S ribosomal protein L4 [Caulobacter crescentus NA1000]
gi|46577288|sp|Q9A8V2.1|RL4_CAUCR RecName: Full=50S ribosomal protein L4
gi|254803724|sp|B8H4D5.1|RL4_CAUCN RecName: Full=50S ribosomal protein L4
gi|13422580|gb|AAK23230.1| ribosomal protein L4 [Caulobacter crescentus CB15]
gi|220963416|gb|ACL94772.1| LSU ribosomal protein L1E-L4P [Caulobacter crescentus NA1000]
Length = 212
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
IR DI+ RVV WQLAKR+ G H + +EVS T KK ++QKGTG ARHG+ R QF GG
Sbjct: 28 IRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTSKKMYKQKGTGGARHGSRRAAQFVGGA 87
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP RSHA L KK+R L L+ ALS++A G L+V + + + KT + ++++
Sbjct: 88 KAHGPVVRSHAFDLPKKIRALALRHALSSKAKAGSLVVVDSVALTEAKTAALRATFDKI- 146
Query: 245 NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
K L+ G + KLA +N+ V+VLP+
Sbjct: 147 GLKNALVIAGPEVDANFKLAARNIPNVDVLPN 178
>gi|160902255|ref|YP_001567836.1| 50S ribosomal protein L4 [Petrotoga mobilis SJ95]
gi|189029512|sp|A9BHA4.1|RL4_PETMO RecName: Full=50S ribosomal protein L4
gi|160359899|gb|ABX31513.1| ribosomal protein L4/L1e [Petrotoga mobilis SJ95]
Length = 221
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 3/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + N NE G + + ++F++ D+++R V QL ++ GT STKT SEVSG G+K
Sbjct: 4 IDIYNIQNEKVGTLDIKDEIFNIDPNMDVLYRYVDMQLTNKRAGTASTKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW QK TGRAR G++R P FR G GPKPR LNKK++RL LK ALS R E L
Sbjct: 64 PWPQKHTGRARAGSIRSPLFRHGGVTFGPKPREFHKDLNKKMKRLALKSALSVRYRENNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQ--MENTKKVLLCD-GGCIHEKLKLATQNLHYVNVL 274
+V ++++ +TK + N ++ ME+TK + L +E KL+ +NL V V+
Sbjct: 124 IVLDEVKFEKPRTKDVKNILSKFGMEDTKVLFLFPYHQEQYENFKLSARNLPKVKVI 180
>gi|354558441|ref|ZP_08977696.1| ribosomal protein L4/L1e [Desulfitobacterium metallireducens DSM
15288]
gi|353546919|gb|EHC16366.1| ribosomal protein L4/L1e [Desulfitobacterium metallireducens DSM
15288]
Length = 207
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L VF + ++H V QLA +++GT ST EV G G+K
Sbjct: 4 VQVVNMQGSPVGEIELNEYVFGIEPNAHVLHSAVVAQLASQRRGTSSTLLRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P FRGG + GPKPR + L KKVRRL L+ ALS++ E KL
Sbjct: 64 PWRQKGTGRARAGSIRSPLFRGGAVLFGPKPRDYGFSLPKKVRRLALRSALSSKVNEQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
+V EDL + KT+ +V + KK L+ +++ + L+ +N+ V
Sbjct: 124 IVLEDLSLTEAKTREMVKVLKALNADKKALIVT-DELNDTVVLSARNIEGV 173
>gi|308070974|ref|YP_003872579.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681]
gi|310644201|ref|YP_003948960.1| 50S ribosomal protein L4 [Paenibacillus polymyxa SC2]
gi|374320646|ref|YP_005073775.1| 50S ribosomal protein L4 [Paenibacillus terrae HPL-003]
gi|305860253|gb|ADM72041.1| 50S ribosomal protein L4 [Paenibacillus polymyxa E681]
gi|309249152|gb|ADO58719.1| 50S ribosomal protein L4 [Paenibacillus polymyxa SC2]
gi|357199655|gb|AET57552.1| 50S ribosomal protein L4 [Paenibacillus terrae HPL-003]
gi|392304897|emb|CCI71260.1| 50S ribosomal protein L4 BL4 [Paenibacillus polymyxa M1]
Length = 207
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/148 (44%), Positives = 90/148 (60%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
N G + L VF + K ++H V QLA +QGTH K SEV G G+KPW+Q
Sbjct: 8 NISGSQVGEIELNDAVFGIEPNKHVLHDAVVMQLASLRQGTHKVKGRSEVRGGGRKPWKQ 67
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
KGTGRAR G++R PQ+ GG T+ GP PRS+A KL KKVRRL +K ALS++ E +++V +
Sbjct: 68 KGTGRARQGSIRAPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIKSALSSKVIENEIIVLD 127
Query: 225 DLEVPSHKTKFIVNYYNQMENTKKVLLC 252
L + KTK N ++ +K L+
Sbjct: 128 ALTLNGPKTKEFAAILNNLKADRKALIV 155
>gi|332685664|ref|YP_004455438.1| 50S ribosomal protein L4 [Melissococcus plutonius ATCC 35311]
gi|379726738|ref|YP_005318923.1| 50S ribosomal protein L4p [Melissococcus plutonius DAT561]
gi|332369673|dbj|BAK20629.1| LSU ribosomal protein L4p (L1e) [Melissococcus plutonius ATCC
35311]
gi|376317641|dbj|BAL61428.1| 50S ribosomal protein L4p [Melissococcus plutonius DAT561]
Length = 207
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G M L D+F + +++++ + Q A +QGTH+ K S V G
Sbjct: 1 MPKIALFKQDGTKNGEMTLNEDIFGIDPNQNVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL +KVRRL +K LS + A+
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPRKVRRLAMKSVLSEKVAD 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+ E L + KTK F N +TK +++ + G ++ L+ +NL V+V S
Sbjct: 121 NNLVAVESLNFETPKTKEFKQVLANLSIDTKVLIILEDG--NDNAALSARNLPNVSVATS 178
>gi|15674080|ref|NP_268255.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis Il1403]
gi|281492758|ref|YP_003354738.1| 50S ribosomal protein L1E (= L4P) [Lactococcus lactis subsp. lactis
KF147]
gi|385831623|ref|YP_005869436.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis CV56]
gi|418037375|ref|ZP_12675757.1| hypothetical protein LLCRE1631_00564 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|46577289|sp|Q9CDW3.1|RL4_LACLA RecName: Full=50S ribosomal protein L4
gi|12725152|gb|AAK06196.1|AE006438_10 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis Il1403]
gi|281376410|gb|ADA65896.1| LSU ribosomal protein L1E (= L4P) [Lactococcus lactis subsp. lactis
KF147]
gi|326407631|gb|ADZ64702.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis CV56]
gi|354694647|gb|EHE94295.1| hypothetical protein LLCRE1631_00564 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|374674185|dbj|BAL52076.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. lactis IO-1]
Length = 208
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L VF + + ++ VV Q A +QGTH+ K S VSG GKKP
Sbjct: 5 SLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G+ R PQ+RGG T+ GP PRS+A KL +KVR+L LK S + A+GKL+
Sbjct: 65 WRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVADGKLI 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
+ L+ + KT + + +KVL+ +E +L+ +NL V V
Sbjct: 125 AVDTLDFTAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLANVKV 176
>gi|342215804|ref|ZP_08708451.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341586694|gb|EGS30094.1| 50S ribosomal protein L4 [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 206
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 106/180 (58%), Gaps = 8/180 (4%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L D+FDV + + ++ VV+ LA R+QGT S KT +EV G G+KPWRQKGTGRAR G++
Sbjct: 19 LKKDIFDVEVNEHAVYLVVKNILANRRQGTQSAKTRAEVRGGGRKPWRQKGTGRARQGSI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ++GG + PKPR ++ KKV+RL L+ L+++ E +L++ + L++ KTK
Sbjct: 79 RSPQWKGGGVVFAPKPRDYSYTTPKKVKRLALRSVLTSKVQENELILVDALKLEEAKTKA 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFD 295
+ + KK L+ G +E + A +N+ V VL QS + Y L +D
Sbjct: 139 MAQALKALNAAKKSLILVGEG-NESVARAAKNIAGVKVL------NIQSINV-YDLLKYD 190
>gi|239787564|emb|CAX84032.1| 50S ribosomal protein L4 [uncultured bacterium]
Length = 217
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
Query: 102 PVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
PV + N+ + L+ F +R D++ RVV +QLAKR+ GT STK EV G G KP
Sbjct: 5 PVVDAANQTSHTVNLSSHAFGCEVRGDLLTRVVHYQLAKRRLGTASTKRRGEVRGGGHKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
+RQKGTG AR GT+R PQ+R G + GP PR +++K+N+K R LGL+ ALSA+ +L+
Sbjct: 65 YRQKGTGNARQGTIRAPQYRTGGVVFGPHPRDYSVKMNRKERALGLRTALSAKREAEELI 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
V D + KT+ ++ ++ VL+ E+++ + +NL V+V+
Sbjct: 125 VLTDFGLTEIKTRSMLQVLTRLNAANSVLIVLPES-DERIERSARNLPGVDVI 176
>gi|407642013|ref|YP_006805772.1| 50S ribosomal protein L4 [Nocardia brasiliensis ATCC 700358]
gi|407304897|gb|AFT98797.1| 50S ribosomal protein L4 [Nocardia brasiliensis ATCC 700358]
Length = 224
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 99/160 (61%), Gaps = 5/160 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+L +PV + G + L ++FDV ++H+VV QLA +QGTHSTKT EVSG
Sbjct: 9 NLTLPVKEPGGKTNGTVELPAEIFDVTANVALMHQVVTAQLAAARQGTHSTKTRGEVSGG 68
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 69 GKKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARN 128
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDG 254
++ V +L + PS TK + ++ + KK L+ G
Sbjct: 129 ERIHVVTELVAGQTPS--TKTAKTFLAELSDRKKFLVVVG 166
>gi|357384712|ref|YP_004899436.1| 50S ribosomal protein L4 [Pelagibacterium halotolerans B2]
gi|351593349|gb|AEQ51686.1| LSU ribosomal protein L4p (L1e) [Pelagibacterium halotolerans B2]
Length = 206
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 101/178 (56%), Gaps = 1/178 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L VF + R D+I R+VR+QL KR GTH K +EV+ TG
Sbjct: 1 MELQVTTLEGKSAGKVTLDDAVFGLEPRADLIQRMVRYQLLKRMSGTHDVKNRAEVAQTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK RQKG G ARHG+ R FRGG GP PRSHAI+L KKVR L LK ALSA+A G
Sbjct: 61 KKFGRQKGGGGARHGSRRSNIFRGGGRAFGPTPRSHAIELPKKVRALALKHALSAKAKAG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L++ + + KT + + ++ L+ G + LA +N+ ++VLP+
Sbjct: 121 DLVIIDQATAEAPKTAALRAIFGKL-GFSNALIIGGTELDTNFALAARNIPQIDVLPA 177
>gi|225387236|ref|ZP_03757000.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme
DSM 15981]
gi|225046654|gb|EEG56900.1| hypothetical protein CLOSTASPAR_00988 [Clostridium asparagiforme
DSM 15981]
Length = 206
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGSMELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I LNKK +R LK AL++R GK
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPVPRDYTITLNKKEKRAALKSALTSRVQGGKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCD 253
+V ++L+ KTK N + ++ N V+L D
Sbjct: 124 IVVDELKFDEIKTKKFQNVMDNLKVNKALVVLAD 157
>gi|116490659|ref|YP_810203.1| 50S ribosomal protein L4P [Oenococcus oeni PSU-1]
gi|290890075|ref|ZP_06553158.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429]
gi|419758615|ref|ZP_14284930.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB304]
gi|419857026|ref|ZP_14379740.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB202]
gi|419858556|ref|ZP_14381227.1| 50S ribosomal protein L4P [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184449|ref|ZP_15641872.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB318]
gi|421188644|ref|ZP_15645980.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB419]
gi|421190661|ref|ZP_15647957.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB422]
gi|421191370|ref|ZP_15648647.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB548]
gi|421193984|ref|ZP_15651224.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB553]
gi|421194245|ref|ZP_15651467.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB568]
gi|421197175|ref|ZP_15654355.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB576]
gi|122277157|sp|Q04G84.1|RL4_OENOB RecName: Full=50S ribosomal protein L4
gi|116091384|gb|ABJ56538.1| LSU ribosomal protein L4P [Oenococcus oeni PSU-1]
gi|290480266|gb|EFD88907.1| hypothetical protein AWRIB429_0548 [Oenococcus oeni AWRIB429]
gi|399904643|gb|EJN92096.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB304]
gi|399964817|gb|EJN99451.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB419]
gi|399967163|gb|EJO01646.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB318]
gi|399969431|gb|EJO03771.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB422]
gi|399970450|gb|EJO04743.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB553]
gi|399972193|gb|EJO06407.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB548]
gi|399975689|gb|EJO09725.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB576]
gi|399978257|gb|EJO12213.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB568]
gi|410498504|gb|EKP89954.1| 50S ribosomal protein L4P [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410498685|gb|EKP90133.1| 50S ribosomal protein L4P [Oenococcus oeni AWRIB202]
Length = 207
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 94/162 (58%), Gaps = 1/162 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + LA +F + + ++ V Q A +QGTHS K S VSG G+KPWRQKGTG AR
Sbjct: 15 GEVELADSIFAIEPNEAVVTDAVLMQRASLRQGTHSVKNRSTVSGGGRKPWRQKGTGNAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG GP PR +A K+N+K RL LK LS + + ++ ++L
Sbjct: 75 QGSIRAPQWRGGAISMGPIPRPYAYKINRKAYRLALKSVLSDKVSAKNFVIIDELNFEKP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
TK I + N++E TKK LL +E KL+ +NL V V
Sbjct: 135 STKAIADSLNKLEATKKTLLVVDDA-NENAKLSARNLPNVQV 175
>gi|392944817|ref|ZP_10310459.1| 50S ribosomal protein L4, bacterial/organelle [Frankia sp. QA3]
gi|392288111|gb|EIV94135.1| 50S ribosomal protein L4, bacterial/organelle [Frankia sp. QA3]
Length = 236
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/146 (47%), Positives = 92/146 (63%), Gaps = 5/146 (3%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
D G + L G VFDVP+ +IH+VV QLA +QGTH+TKT EV G G+KP+RQKGTGR
Sbjct: 27 DGGSVELPGGVFDVPLNVPLIHQVVVAQLAAARQGTHATKTRGEVRGGGRKPYRQKGTGR 86
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL--- 226
AR G+LR PQF GG +HGP PR + + KK++ L+ ALS RA ++ V L
Sbjct: 87 ARQGSLRAPQFTGGGIVHGPTPRKYDQRTPKKMKAAALRGALSDRARNNRVHVVSSLVTG 146
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLC 252
E P+ TK V + +T++VL+
Sbjct: 147 ETPA--TKAAVTALRAIADTRRVLVV 170
>gi|86739296|ref|YP_479696.1| 50S ribosomal protein L4 [Frankia sp. CcI3]
gi|109893595|sp|Q2JFH5.1|RL4_FRASC RecName: Full=50S ribosomal protein L4
gi|86566158|gb|ABD09967.1| LSU ribosomal protein L4P [Frankia sp. CcI3]
Length = 245
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/146 (47%), Positives = 92/146 (63%), Gaps = 5/146 (3%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L G VFDVP+ +IH+VV QLA +QGTH TKT EV G G+KP+RQKGTGR
Sbjct: 25 EGGSVELPGGVFDVPLNIPLIHQVVVAQLAAARQGTHDTKTRGEVRGGGRKPYRQKGTGR 84
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL--- 226
AR G+LR PQF GG T+HGP PR + + KK++ L+ ALS RA ++ V L
Sbjct: 85 ARQGSLRAPQFTGGGTVHGPTPRRYDQRTPKKMKAAALRGALSDRARNNRVHVVSSLVSG 144
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLC 252
E PS TK V + +T++VL+
Sbjct: 145 ETPS--TKSAVTALRTIADTRRVLVV 168
>gi|410454388|ref|ZP_11308327.1| 50S ribosomal protein L4 [Bacillus bataviensis LMG 21833]
gi|409932203|gb|EKN69170.1| 50S ribosomal protein L4 [Bacillus bataviensis LMG 21833]
Length = 207
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N++ G + L VF + + ++ + Q A +QGTH TK SEV G
Sbjct: 1 MPKVALLNQNGSQVGEIELNEAVFGIEPNQHVLFEAIVMQRASLRQGTHKTKIRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+LV E L + KTK + + KK L+ + E + L+ +N+ V V+
Sbjct: 121 ENILVLESLAFEAPKTKEFKSVLGGLSVEKKALIVTAD-LDENVALSARNIPGVTVV 176
>gi|83858565|ref|ZP_00952087.1| 50S ribosomal protein L4 [Oceanicaulis sp. HTCC2633]
gi|83853388|gb|EAP91240.1| 50S ribosomal protein L4 [Oceanicaulis sp. HTCC2633]
Length = 212
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
G + L+ VF + +R DI+ R V+WQL++RQ GTH TK E++ T KK RQKG G A
Sbjct: 14 GSIDLSDAVFGIEEVRADILQRAVKWQLSRRQAGTHKTKERGEIARTKKKFGRQKGGGGA 73
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
RHG+ P F GG HGP+ RSHA +L KKVR L LK ALS +A +L++ ++ +
Sbjct: 74 RHGSRNAPIFVGGGVAHGPRVRSHATELPKKVRALALKHALSTKAGAKQLVILDEARLDE 133
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
KTK + ++++ L+ DG + E A +N+ ++VLP+
Sbjct: 134 AKTKALTEKFSKL-GWSNALIIDGETLDENFARAARNIPLIDVLPA 178
>gi|373859631|ref|ZP_09602357.1| ribosomal protein L4/L1e [Bacillus sp. 1NLA3E]
gi|372450626|gb|EHP24111.1| ribosomal protein L4/L1e [Bacillus sp. 1NLA3E]
Length = 207
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 102/177 (57%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L VF + ++ V Q A +QGTH TK SEV+G
Sbjct: 1 MPKVALYNQSGSQVGEIELNDSVFGIAPNNHVLFEAVIMQRASLRQGTHKTKVRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPW+QKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYSYKLPKKVRRLAIKSALSSKLIE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+LV E+L + KTK + K L+ + E + L+ +N+ V V+
Sbjct: 121 ENILVLENLGFEAPKTKEFTQVLKGLSVASKALIVTAD-LDENVALSARNIPGVTVV 176
>gi|187934984|ref|YP_001884474.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B]
gi|188589298|ref|YP_001919673.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43]
gi|251779469|ref|ZP_04822389.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|226730642|sp|B2UYB1.1|RL4_CLOBA RecName: Full=50S ribosomal protein L4
gi|226730643|sp|B2TIH6.1|RL4_CLOBB RecName: Full=50S ribosomal protein L4
gi|187723137|gb|ACD24358.1| 50S ribosomal protein L4 [Clostridium botulinum B str. Eklund 17B]
gi|188499579|gb|ACD52715.1| 50S ribosomal protein L4 [Clostridium botulinum E3 str. Alaska E43]
gi|243083784|gb|EES49674.1| 50S ribosomal protein L4 [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 206
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L +VF+V + K +H+VV LA ++QGT S KT +EV G
Sbjct: 1 MPTVGLFNQEGKQVGDIQLNANVFEVEVNKHALHQVVVALLANKRQGTQSAKTRTEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ +
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRVSIPKSMRRVAMKSALTSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
G+++V E L + KTK + + N KK L+ +E + + +N+ V+V+P
Sbjct: 121 GQMVVLESLSFEAPKTKQFIEMLSAF-NAKKTLIITAES-NEAVYKSARNIQGVSVIP 176
>gi|443673934|ref|ZP_21138980.1| 50S ribosomal protein L4 [Rhodococcus sp. AW25M09]
gi|443413534|emb|CCQ17318.1| 50S ribosomal protein L4 [Rhodococcus sp. AW25M09]
Length = 225
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 5/159 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V + G + L ++FD P ++H+VV QLA +QGTHSTKT EV G G
Sbjct: 12 LTLDVKEAGGKTNGTVDLPAEIFDAPANIALLHQVVIAQLAAARQGTHSTKTRGEVRGGG 71
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 72 KKPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARSE 131
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDG 254
+L V +L +VPS TK + ++ + KKVLL G
Sbjct: 132 RLHVITELVAGQVPS--TKGAKTFLAEISDRKKVLLVVG 168
>gi|225707434|gb|ACO09563.1| Mitochondrial 39S ribosomal protein L4 [Osmerus mordax]
Length = 302
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 106/183 (57%), Gaps = 2/183 (1%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + + +E G + L DVF +P R DI+H V WQ ++ +TK SEV G
Sbjct: 72 QTWVDTLVSHESEPLGLVDLHPDVFALPARIDILHEVELWQRNYKRISHANTKVRSEVRG 131
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
GKKPW QKG+GRARHG++R P +RGG HGP+ P S+ + KVR GLKIALS++
Sbjct: 132 GGKKPWNQKGSGRARHGSIRSPIWRGGGVSHGPRGPTSYYYMIPIKVRVQGLKIALSSKL 191
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVL 274
A+ L V + L +P+ +++V+ + VLL D + + + AT L VNV+
Sbjct: 192 AQNYLHVVDSLNIPTPDPQYLVDLIRYRYCGESVLLVDATDNLPDNILQATAGLKTVNVI 251
Query: 275 PSV 277
P++
Sbjct: 252 PAI 254
>gi|153812866|ref|ZP_01965534.1| hypothetical protein RUMOBE_03273 [Ruminococcus obeum ATCC 29174]
gi|149831078|gb|EDM86167.1| 50S ribosomal protein L4 [Ruminococcus obeum ATCC 29174]
Length = 206
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 83/134 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR + +K+NKK RR LK AL+++ E KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQENKL 123
Query: 221 LVFEDLEVPSHKTK 234
+V + L + KTK
Sbjct: 124 VVVDSLALAEAKTK 137
>gi|302388713|ref|YP_003824534.1| 50S ribosomal protein L4P [Thermosediminibacter oceani DSM 16646]
gi|302199341|gb|ADL06911.1| LSU ribosomal protein L4P [Thermosediminibacter oceani DSM 16646]
Length = 208
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 1/159 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L+ VF V ++ +++H+VV LA ++ GT STKT +EV G G+K
Sbjct: 4 VALYNMQGQQVGEVELSDSVFGVEVKPEVMHQVVLNYLANQRVGTASTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRARHG++R P +R G + GPKPRS+ L KK++RL LK ALSA+ + ++
Sbjct: 64 PWRQKGTGRARHGSIRSPLWRKGGIVFGPKPRSYKYTLPKKLKRLALKSALSAKVRDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIH 258
+V + L + + KTK +V + ++ +TK +++ D ++
Sbjct: 124 IVLDRLTMEAPKTKEMVKVLSNLKADTKSLIVLDASDVN 162
>gi|347751592|ref|YP_004859157.1| 50S ribosomal protein L4 [Bacillus coagulans 36D1]
gi|347584110|gb|AEP00377.1| ribosomal protein L4/L1e [Bacillus coagulans 36D1]
Length = 207
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 109/180 (60%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QGTH K SEV G
Sbjct: 1 MPKVALYNQNGSQVGEVELNDAVFGIEPNEHVLFEAIIMQRASLRQGTHKVKGRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVRE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LV + L + KTK FI N + K +++ DG ++E + L+ +N+ + V+ +
Sbjct: 121 NNILVLDALNFDAPKTKDFIAVLKNLSVDKKALVVTDG--LNENVVLSARNIPGITVVEA 178
>gi|379058899|ref|ZP_09849425.1| 50S ribosomal protein L4P [Serinicoccus profundi MCCC 1A05965]
Length = 216
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I +T D G + L ++FDV +IH+VV QLA +QGTHSTKT EV G G+K
Sbjct: 4 ITITKPAGGDAGTVDLPAELFDVQTNVPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G+ R PQF GG T+HGP+PR++A K KK++ L+ ALS RA G++
Sbjct: 64 PYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRNYAQKTPKKMKAAALRGALSDRARHGRI 123
Query: 221 LVFEDL---EVPSHKT 233
V L E+PS +T
Sbjct: 124 HVLSALVEGELPSTRT 139
>gi|167645579|ref|YP_001683242.1| 50S ribosomal protein L4 [Caulobacter sp. K31]
gi|189029494|sp|B0T2C3.1|RL4_CAUSK RecName: Full=50S ribosomal protein L4
gi|167348009|gb|ABZ70744.1| ribosomal protein L4/L1e [Caulobacter sp. K31]
Length = 212
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 103/177 (58%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ V N G + L +F + IR DI+ RVV WQLAKR+ G H + +EVS TGK
Sbjct: 3 LDVINLDGGKAGSVDLDDAIFGIADIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K ++QKGTG ARHG+ R QF GG HGP RSHA L KK+R + L+ ALS++A G
Sbjct: 63 KMYKQKGTGSARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRAMALRHALSSKAKSGS 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V + + KT + ++++ K L+ G + KLA +N+ ++VLP+
Sbjct: 123 IIVLDTAVLTDPKTAALRANFDKI-GLKNALVIAGPEVDGNFKLAARNIPNIDVLPN 178
>gi|397670938|ref|YP_006512473.1| 50S ribosomal protein L4 [Propionibacterium propionicum F0230a]
gi|395141018|gb|AFN45125.1| 50S ribosomal protein L4 [Propionibacterium propionicum F0230a]
Length = 235
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 91/144 (63%), Gaps = 5/144 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L G++FDV +IH+VV QLA +QGTHSTKT EV G G KPWRQKGTGRAR
Sbjct: 17 GTAELPGEIFDVQTNIPLIHQVVVAQLAAARQGTHSTKTRGEVRGGGSKPWRQKGTGRAR 76
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
HG+ R P + GG T+HGPKPR ++ + KK+ L+ +LS RA +G++ V +L EV
Sbjct: 77 HGSRRSPIWTGGGTVHGPKPRDYSQRTPKKMIVAALRGSLSDRARDGQVFVVSELVSGEV 136
Query: 229 PSHKTKFIVNYYNQMENTKKVLLC 252
PS +T Q+ KKVL+
Sbjct: 137 PSTRTAL--ETLEQLGELKKVLVV 158
>gi|154684635|ref|YP_001419796.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens FZB42]
gi|308172008|ref|YP_003918713.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7]
gi|384157730|ref|YP_005539803.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens TA208]
gi|384263747|ref|YP_005419454.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385267144|ref|ZP_10045231.1| 50S ribosomal protein L4 [Bacillus sp. 5B6]
gi|429503651|ref|YP_007184835.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|452854179|ref|YP_007495862.1| ribosomal protein L4 [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|166234633|sp|A7Z0N9.1|RL4_BACA2 RecName: Full=50S ribosomal protein L4
gi|154350486|gb|ABS72565.1| RplD [Bacillus amyloliquefaciens FZB42]
gi|307604872|emb|CBI41243.1| ribosomal protein L4 [Bacillus amyloliquefaciens DSM 7]
gi|328551818|gb|AEB22310.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens TA208]
gi|380497100|emb|CCG48138.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|385151640|gb|EIF15577.1| 50S ribosomal protein L4 [Bacillus sp. 5B6]
gi|429485241|gb|AFZ89165.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|452078439|emb|CCP20189.1| ribosomal protein L4 [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 207
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+
Sbjct: 121 NNIIVLEDLTLDTVKTKEMAAILKGLSVEKKALIVTADA-NEAVSLSARNIPGVTVV 176
>gi|375360807|ref|YP_005128846.1| 50S ribosomal protein L4 BL4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421733049|ref|ZP_16172164.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451348493|ref|YP_007447124.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens IT-45]
gi|371566801|emb|CCF03651.1| 50S ribosomal protein L4 BL4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407073090|gb|EKE46088.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449852251|gb|AGF29243.1| 50S ribosomal protein L4 [Bacillus amyloliquefaciens IT-45]
Length = 207
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+
Sbjct: 121 NNIIVLEDLTLDTVKTKEMAAVLKGLSVEKKALIVTADA-NEAVSLSARNIPGVTVV 176
>gi|365873446|ref|ZP_09412979.1| 50S ribosomal protein L4, bacterial/organelle [Thermanaerovibrio
velox DSM 12556]
gi|363983533|gb|EHM09740.1| 50S ribosomal protein L4, bacterial/organelle [Thermanaerovibrio
velox DSM 12556]
Length = 208
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 93/149 (62%)
Query: 104 TNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
NF E G + L+ VF P+ +H+VV LA + GTH TK +VSG G+KPWR
Sbjct: 7 VNFNGEVIGEVELSEAVFGAPVHVPAMHQVVVAHLANCRVGTHDTKDRGDVSGGGRKPWR 66
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QK TGRAR G++R P + GG HGP PR + K+NKKVRRL L+ AL+ +A E +LV
Sbjct: 67 QKHTGRARQGSIRSPLWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAKEDNMLVI 126
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+ ++ + KTK ++ + N+++ KK LL
Sbjct: 127 DAFQMEAPKTKVMLEFLNKVQAGKKPLLV 155
>gi|224542239|ref|ZP_03682778.1| hypothetical protein CATMIT_01414 [Catenibacterium mitsuokai DSM
15897]
gi|224524781|gb|EEF93886.1| 50S ribosomal protein L4 [Catenibacterium mitsuokai DSM 15897]
Length = 215
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L +VF + I VV Q A +QGTH K EVSG GKKPWRQKGTGRAR G++
Sbjct: 27 LNENVFGIEPNNQAIFDVVLLQRASLRQGTHKVKNRHEVSGGGKKPWRQKGTGRARQGSI 86
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+RGG + GP PRS+ K+NKKV+ L L+ LS + + +L+ + + + KTK
Sbjct: 87 RAPQWRGGGIVFGPTPRSYDFKINKKVKNLALRSVLSQKVIDQELVALDAIAFETIKTKN 146
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+VN+ EN +K L+ + E L L+ +N+ V V+ +
Sbjct: 147 VVNFLGNFENPRKTLIVVDK-LEENLVLSARNVPGVKVIEA 186
>gi|295688907|ref|YP_003592600.1| 50S ribosomal protein L4 [Caulobacter segnis ATCC 21756]
gi|295430810|gb|ADG09982.1| ribosomal protein L4/L1e [Caulobacter segnis ATCC 21756]
Length = 212
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
IR DI+ RVV WQLAKR+ G H + +EVS T KK ++QKGTG ARHG+ R QF GG
Sbjct: 28 IRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTSKKMYKQKGTGGARHGSRRAAQFVGGA 87
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME 244
HGP RSHA L KK+R L LK ALS++A G L+V + + KT + ++++
Sbjct: 88 KAHGPVVRSHAFDLPKKIRALALKHALSSKAKSGSLVVLDSAVLTDPKTAALRANFDKI- 146
Query: 245 NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
K L+ G + KLA +N+ V+VLP+
Sbjct: 147 GLKNALVIAGPEVDANFKLAARNIPNVDVLPN 178
>gi|169823853|ref|YP_001691464.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328]
gi|302379795|ref|ZP_07268279.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3]
gi|303234753|ref|ZP_07321379.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4]
gi|417925299|ref|ZP_12568725.1| 50S ribosomal protein L4 [Finegoldia magna SY403409CC001050417]
gi|226730666|sp|B0RZU1.1|RL4_FINM2 RecName: Full=50S ribosomal protein L4
gi|167830658|dbj|BAG07574.1| 50S ribosomal protein L4 [Finegoldia magna ATCC 29328]
gi|302312383|gb|EFK94380.1| 50S ribosomal protein L4 [Finegoldia magna ACS-171-V-Col3]
gi|302494094|gb|EFL53874.1| 50S ribosomal protein L4 [Finegoldia magna BVS033A4]
gi|341592019|gb|EGS34915.1| 50S ribosomal protein L4 [Finegoldia magna SY403409CC001050417]
Length = 207
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 95/151 (62%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E+ G + L +F V + + +++ VV+ QLA ++QGT S KT SEV G G+K
Sbjct: 4 VQILNQQGENVGELELNEAIFGVDVNEHVVYEVVKNQLANKRQGTQSAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG + PKPR ++ + KKVRRL +K L+ + + ++
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGVVFAPKPRDYSYAVPKKVRRLAIKSVLTEKVNDNEM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLL 251
+V + L + + TK V ++ KK L+
Sbjct: 124 IVLDKLNLDAISTKKAVEVLKNIKADKKALV 154
>gi|424779809|ref|ZP_18206701.1| LSU ribosomal protein L4p [Catellicoccus marimammalium M35/04/3]
gi|422843559|gb|EKU27989.1| LSU ribosomal protein L4p [Catellicoccus marimammalium M35/04/3]
Length = 207
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 103/177 (58%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L +F + ++ ++ + Q A +QGTH+ + S VSG
Sbjct: 1 MPTVALFKQDGTQNGEVTLNDAIFGIEPNENAVYDAIIMQRASLRQGTHAVRNRSAVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + AE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSEKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
K+++ + L + KTK ++ T K LL +E L+ +NL V+V+
Sbjct: 121 NKMVIVDALNFETPKTKEFKQVLANLDVTTKTLLVVENE-NETAMLSARNLPNVSVV 176
>gi|403071308|ref|ZP_10912640.1| 50S ribosomal protein L4 [Oceanobacillus sp. Ndiop]
Length = 207
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +D G + L VF + ++H V Q A +QGTH+ K S+V G
Sbjct: 1 MPKVALLKQDGSNAGDIELNDSVFGIEPNTHVLHEAVVMQRASMRQGTHAVKNRSDVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL LK ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLALKSALSSKVKE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
LLV + + + + KTK ++ + + KVL+ E + + NL V VL
Sbjct: 121 DSLLVLDSIAMDAPKTKEVIKMLDALNVDTKVLIVLADK-DETVIRSANNLQSVKVL 176
>gi|373453139|ref|ZP_09545036.1| 50S ribosomal protein L4 [Eubacterium sp. 3_1_31]
gi|371964191|gb|EHO81726.1| 50S ribosomal protein L4 [Eubacterium sp. 3_1_31]
Length = 209
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 99/176 (56%), Gaps = 7/176 (3%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ LA VF + + I + Q A +QGTH TK +EV G G+KPWRQKGTGRAR G
Sbjct: 17 ITLADTVFGIEPNQQCIFDAIVMQRASMRQGTHDTKNRTEVRGGGRKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R Q+RGG T+ GP PRS+A KLNKKVRRL LK LS + AE + V + LE+ + KT
Sbjct: 77 SIRATQWRGGGTVFGPTPRSYAYKLNKKVRRLALKSVLSEKVAENAMSVVDKLELEAPKT 136
Query: 234 KFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIY 288
K + +K L + G E L+ +N +PS++ T +Y
Sbjct: 137 KAFNEIIANLNAPRKTLFVVSEGEDFENAFLSMRN------IPSMMMLTADGLNVY 186
>gi|431805757|ref|YP_007232658.1| 50S ribosomal protein L4 [Liberibacter crescens BT-1]
gi|430799732|gb|AGA64403.1| LSU ribosomal protein L4p (L1e) [Liberibacter crescens BT-1]
Length = 206
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 103/165 (62%), Gaps = 1/165 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + ++ +F + ++D+I V+RWQLA+R+ GTH +K+ SE+S TG K + QK TGRAR
Sbjct: 14 GEISVSESIFGLSPKEDLIAAVIRWQLARRRSGTHKSKSRSEISYTGSKMYAQKRTGRAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
H + R PQFRGG GP H + +KVR L L A+S++ +L+ ++L
Sbjct: 74 HSSSRAPQFRGGGKAFGPVVIDHEYTIPRKVRSLALCHAISSKIQSEDVLIIDNLVSQEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
KTK+I +++ +E L+ DG ++E KLA+QN+ +++LP+
Sbjct: 134 KTKYIASFFKGLE-LYNALIVDGFQLNENFKLASQNIPNIDLLPA 177
>gi|373455303|ref|ZP_09547139.1| 50S ribosomal protein L4 [Dialister succinatiphilus YIT 11850]
gi|371934943|gb|EHO62716.1| 50S ribosomal protein L4 [Dialister succinatiphilus YIT 11850]
Length = 208
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 107/191 (56%), Gaps = 7/191 (3%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
N ++ G + L VF V + +IH+ V Q+A + GTH+TKT V G GKKPW+Q
Sbjct: 8 NVAGQETGEIELNDSVFGVDYNEAVIHQAVVRQMANERLGTHATKTRGLVRGGGKKPWKQ 67
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
KGTGRAR G++R P + GG T+ GP PRSHA + KK R+L +K ALS + +L+V +
Sbjct: 68 KGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKAMPKKARQLAVKSALSEKLRANELVVID 127
Query: 225 DLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQS 284
+ + KTK +V + K L+ DGG E L+ +N +P V++ S
Sbjct: 128 TIHFDAPKTKEVVKMLSAFNAAGKALIVDGGDAAENTVLSARN------IPG-VKAYVPS 180
Query: 285 FLIYYYFLDFD 295
+ Y +++D
Sbjct: 181 GINIYDIVNYD 191
>gi|66810850|ref|XP_639132.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4]
gi|60467762|gb|EAL65778.1| hypothetical protein DDB_G0283275 [Dictyostelium discoideum AX4]
Length = 258
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 107/179 (59%), Gaps = 5/179 (2%)
Query: 101 IPVTNFFNEDKGF--MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+PV NF ++ + L+ DVF VP+R D++HR+VR+Q AK QQGTH + + T
Sbjct: 51 VPVLNFNDKLSPIENIQLSKDVFSVPLRVDLLHRMVRYQRAKSQQGTHQALNMGRMERTN 110
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP RQKG+G AR GT FRGG P RSHA L +KVR+L LK+ALS + A+
Sbjct: 111 KKPTRQKGSGNARKGTNHSVHFRGGARTFAPTMRSHAHDLPRKVRKLCLKVALSTKLAQN 170
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KL+V + + SHKTK +++ + + + LL D I + L ++ N+ ++ LP +
Sbjct: 171 KLVVVDGFNLESHKTKELLSKLPK--DWGRTLLVDSE-ISDFLNKSSLNVQKIDTLPQL 226
>gi|435852976|ref|YP_007314295.1| 50S ribosomal protein L4, bacterial/organelle [Halobacteroides
halobius DSM 5150]
gi|433669387|gb|AGB40202.1| 50S ribosomal protein L4, bacterial/organelle [Halobacteroides
halobius DSM 5150]
Length = 209
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 98/153 (64%), Gaps = 1/153 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+P+ + + G + L ++FDV I ++++H V QLA ++ GT TKT +V G G+K
Sbjct: 4 LPLYDTEGQTVGNVDLNDEIFDVEINENVVHEAVTAQLAAKRAGTAKTKTRGQVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRARHG++R P + GG T GP+PRS+ + KKV++L +K ALSA+ AE L
Sbjct: 64 PWRQKGTGRARHGSIRSPIWVGGGTTFGPQPRSYEKNVPKKVKKLAVKSALSAKVAENSL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENT-KKVLLC 252
V ++ + KTK +V+ + + KKVL+
Sbjct: 124 SVVDEFDFEQPKTKQMVSVLDNFKAADKKVLIV 156
>gi|295109478|emb|CBL23431.1| LSU ribosomal protein L4P [Ruminococcus obeum A2-162]
Length = 206
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 91/154 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR + +K+NKK RR LK AL+++ + KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQDNKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG 254
+V + L + KTK + ++ K +++ G
Sbjct: 124 VVVDSLALAEVKTKEMQKVLTNLKAEKALIVTAG 157
>gi|452752806|ref|ZP_21952546.1| LSU ribosomal protein L4p (L1e) [alpha proteobacterium JLT2015]
gi|451959878|gb|EMD82294.1| LSU ribosomal protein L4p (L1e) [alpha proteobacterium JLT2015]
Length = 206
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 72/166 (43%), Positives = 100/166 (60%), Gaps = 2/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R DI+HRVV WQLA R+ + + +V+ T KK RQKG G AR
Sbjct: 14 GDIELPEEIFGLEARPDILHRVVTWQLANRRGMARAARERGDVARTSKKFGRQKGGGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P F GG HGPK R+ LNKKVR LGLK ALS +AAEGKL+V +DL++
Sbjct: 74 HGSRKAPIFVGGGKAHGPKARTFEQSLNKKVRVLGLKTALSVKAAEGKLVVLKDLDLKDA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KTK + ++ ++ L D +E K A NL +++VLP+
Sbjct: 134 KTKALKESLGKL-GFERALFIDAET-NEGFKKAAANLPHIDVLPTA 177
>gi|225717040|gb|ACO14366.1| Mitochondrial 39S ribosomal protein L4 [Esox lucius]
Length = 302
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 4/173 (2%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
+E G + L D+F VP R DI+H V WQ + ++ TK SEV G G+KPW+QKG+
Sbjct: 83 SEPLGLVDLHPDIFAVPARVDILHDVEMWQRSFKRISYAHTKVRSEVRGGGRKPWKQKGS 142
Query: 168 GRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
GRARHG++R P +RGG HGP+ P S+ L K+R GLKIALS++ A+ L V + L
Sbjct: 143 GRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKIRVQGLKIALSSKLAQDYLHVVDTL 202
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGC--IHEKLKLATQNLHYVNVLPSV 277
+P+ +++++ + VL+ D C E + AT++L VNV+P++
Sbjct: 203 NIPTPDPEYLMDLIRFRYWGESVLIVD-ACEEFPENILQATESLKTVNVIPAI 254
>gi|366052601|ref|ZP_09450323.1| 50S ribosomal protein L4 [Lactobacillus suebicus KCTC 3549]
Length = 208
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 99/163 (60%), Gaps = 3/163 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L DVF + ++ I+ V Q A +QGTH+ K S VSG GKKPWRQKGTGRAR
Sbjct: 16 GTVDLNADVFGIEPNQNAIYDAVLRQRASLRQGTHAVKNRSAVSGGGKKPWRQKGTGRAR 75
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL +KVR+L +K ALS + A+ KL+V + +
Sbjct: 76 QGSIRSPQWRGGGIVFGPTPRSYSFKLPRKVRQLAIKSALSEKVADDKLVVVDSISFDKP 135
Query: 232 KTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
KTK F N K +L+ D +E + L+ +N+ V V
Sbjct: 136 KTKEFTAVLANLKVAEKTLLVLDKD--NENVALSARNIANVTV 176
>gi|166031658|ref|ZP_02234487.1| hypothetical protein DORFOR_01358 [Dorea formicigenerans ATCC
27755]
gi|346307825|ref|ZP_08849955.1| 50S ribosomal protein L4 [Dorea formicigenerans 4_6_53AFAA]
gi|166028635|gb|EDR47392.1| 50S ribosomal protein L4 [Dorea formicigenerans ATCC 27755]
gi|345904783|gb|EGX74527.1| 50S ribosomal protein L4 [Dorea formicigenerans 4_6_53AFAA]
Length = 206
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 95/161 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L+ VF V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVETIELSDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKL 261
+V + L KTK + N + +K +++ + G ++ +L
Sbjct: 124 IVVDSLTFDEIKTKNVANALKNLNVSKALVVLEDGNVNAEL 164
>gi|125625142|ref|YP_001033625.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris
MG1363]
gi|389855528|ref|YP_006357772.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris
NZ9000]
gi|166234678|sp|A2RNQ4.1|RL4_LACLM RecName: Full=50S ribosomal protein L4
gi|124493950|emb|CAL98945.1| 50S ribosomal protein L4 (BL4) [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071950|gb|ADJ61350.1| 50S ribosomal protein L4 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 208
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L VF + + ++ VV Q A +QGTH+ K S VSG GKKP
Sbjct: 5 SLFKQDGSQAGEVTLNDSVFGIEPNESVVFDVVISQRASLRQGTHAHKNRSAVSGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G+ R PQ+RGG T+ GP PRS+A KL +KVR+L LK S + +GKL+
Sbjct: 65 WRQKGTGRARQGSTRSPQWRGGGTVFGPNPRSYAYKLPQKVRQLALKSVYSTKVTDGKLI 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
+ L+ + KT + + +KVL+ +E +L+ +NL V V
Sbjct: 125 AVDTLDFAAPKTAEFAKVISALSIERKVLVVLPNEGNEFAELSARNLENVKV 176
>gi|170748637|ref|YP_001754897.1| 50S ribosomal protein L4 [Methylobacterium radiotolerans JCM 2831]
gi|226730692|sp|B1LWS7.1|RL4_METRJ RecName: Full=50S ribosomal protein L4
gi|170655159|gb|ACB24214.1| ribosomal protein L4/L1e [Methylobacterium radiotolerans JCM 2831]
Length = 206
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + R D++ R+VRWQLAKR+ GTH+ + S+V+ T KK ++QKGTG AR
Sbjct: 14 GSVELNEEIFGLEPRADLLQRMVRWQLAKRRAGTHAVQNRSDVNRTRKKLYKQKGTGNAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG PQFRGG GP R H+ L KKVR L L+ ALS++A L+V +D+++ H
Sbjct: 74 HGAASAPQFRGGGRAFGPVVRDHSHDLPKKVRALALRHALSSKAKASTLIVVDDIKIEDH 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
KTK ++ + +M L+ G + A + + ++VLP
Sbjct: 134 KTKGLIERFGKM-GLSNALIIGGAEVDVNFGRAARAIPQIDVLP 176
>gi|394994788|ref|ZP_10387495.1| 50S ribosomal protein L4 [Bacillus sp. 916]
gi|393804355|gb|EJD65767.1| 50S ribosomal protein L4 [Bacillus sp. 916]
Length = 207
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + L VF + + ++ + Q A +QG+H K SEV G
Sbjct: 1 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGSHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V EDL + + KTK + + KK L+ +E + L+ +N+ V V+ +
Sbjct: 121 NNIIVLEDLTLDTVKTKEMAVILKGLSVEKKALIVTADA-NEAVSLSARNIPGVTVVQA 178
>gi|319654869|ref|ZP_08008944.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2]
gi|317393432|gb|EFV74195.1| 50S ribosomal protein L4 [Bacillus sp. 2_A_57_CT2]
Length = 207
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+ G + L +F + + ++ + Q A +QGTH TK SEV+G
Sbjct: 1 MPKVALFNQSGSKVGDIELNDAIFGIEPNQHVLFEAIVMQRASLRQGTHKTKIRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG T+ GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LV E L + KTK + K L+ + E + L+ +N+ V V+ +
Sbjct: 121 ENILVLEGLAFETPKTKDFKGVLTGLSVDSKALIVTAD-LDENVALSARNIPGVTVVSA 178
>gi|88704377|ref|ZP_01102091.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71]
gi|88701428|gb|EAQ98533.1| 50S ribosomal protein L4 [Congregibacter litoralis KT71]
Length = 205
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
NE G + ++ F +D++H+VV LA +QGT + KT S+VSG GKKPWRQKGT
Sbjct: 10 NESAGTLSVSDANFAREYNEDLVHQVVTSFLAGARQGTRAQKTRSDVSGGGKKPWRQKGT 69
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
GRAR GT+R P +R G +P+ H++K+N+K+ R LK +S + +L+V E L+
Sbjct: 70 GRARAGTIRSPIWRSGGVTFAARPQDHSVKVNRKMYRAALKTIMSELTRQDRLVVVETLD 129
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
+ + KTK +VN + +L+ D ++E L LA++NL V+V
Sbjct: 130 LDAPKTKLLVNQLDGYGVNSALLIAD--QVNENLYLASRNLQKVDV 173
>gi|295702351|ref|YP_003595426.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319]
gi|384049268|ref|YP_005497285.1| 50S ribosomal protein L4 [Bacillus megaterium WSH-002]
gi|294800010|gb|ADF37076.1| 50S ribosomal protein L4 [Bacillus megaterium DSM 319]
gi|345446959|gb|AEN91976.1| 50S ribosomal protein L4 [Bacillus megaterium WSH-002]
Length = 207
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN E+ G + L VF + ++ + Q A ++QGT K SEV G
Sbjct: 1 MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS +A +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKAQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V E L + KTK +V + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTAD-LNENVALSARNIPGVTVVAA 178
>gi|383818613|ref|ZP_09973899.1| 50S ribosomal protein L4 [Mycobacterium phlei RIVM601174]
gi|383338469|gb|EID16833.1| 50S ribosomal protein L4 [Mycobacterium phlei RIVM601174]
Length = 217
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 106/177 (59%), Gaps = 2/177 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L I V + G + L ++FDV ++H+VV QLA +QGTHSTKT EVSG G
Sbjct: 3 LKIDVHTPAGKKDGSVELPAELFDVEANIALMHQVVTAQLAAARQGTHSTKTRGEVSGGG 62
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGPKPR ++ + KK+ R L+ ALS RA G
Sbjct: 63 KKPYRQKGTGRARQGSTRAPQFTGGGTVHGPKPRDYSERTPKKMIRAALRGALSDRARNG 122
Query: 219 KL-LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V E +E + TK + + + + KVL+ G K + +NL V+V+
Sbjct: 123 RIHAVTELVEGQTPSTKSAKAFLSTLTDRPKVLVVIGRADETGAK-SVRNLPGVHVI 178
>gi|335046489|ref|ZP_08539512.1| 50S ribosomal protein L4 [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333760275|gb|EGL37832.1| 50S ribosomal protein L4 [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 206
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 89/153 (58%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L +F P+ + ++H V QLA ++QGT T SEVSG G+K
Sbjct: 4 VSVFNMQGKEVGKMDLNDAIFAAPVHEHLLHLAVVAQLANKRQGTQKALTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR + +NKK +R LK ALS AE KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYTTTMNKKEKRAALKAALSNAVAENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD 253
+V +++ KTK N N + K +L D
Sbjct: 124 IVVDEIRFDEIKTKNFQNMLNALHVQKAFVLLD 156
>gi|311029050|ref|ZP_07707140.1| 50S ribosomal protein L4 [Bacillus sp. m3-13]
Length = 207
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 4/171 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ + G + LA VF + ++ + Q A +QGT K SEV+G
Sbjct: 1 MPKVALYNQAGANVGEVELADAVFGIEPNNSVLFDAIVMQRASLRQGTAKVKGRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+LLV E L + KTK + + +E +K L+ E + L+ +N+
Sbjct: 121 NELLVLEGLAFDAPKTKEMTSVLKGLEINRKALIVTADA-DENVALSARNI 170
>gi|343526300|ref|ZP_08763250.1| 50S ribosomal protein L4 [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343394251|gb|EGV06799.1| 50S ribosomal protein L4 [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 207
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 9/180 (5%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIELNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGTVFGPSPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|327287992|ref|XP_003228712.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Anolis
carolinensis]
Length = 314
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 111/213 (52%), Gaps = 6/213 (2%)
Query: 69 PDSSEGAFPSDLLLKKTVL-TPDITIGLH----QDLVIPVTNFFNEDKGFMVLAGDVFDV 123
P S DL+ +L T +I I H Q V + ++ G L DVF V
Sbjct: 52 PRSCSAELQPDLVSSNPILRTCNIAIPKHLAPVQAWVESLKHYDARHMGLADLHPDVFAV 111
Query: 124 PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGG 183
R DI+H V WQ ++ TKT +EV G G+KPWRQKG+GRARHG++R P +RGG
Sbjct: 112 MPRIDILHTVATWQRNFKRISYAKTKTRAEVRGGGRKPWRQKGSGRARHGSIRSPIWRGG 171
Query: 184 TTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ 242
HGP+ P S+ L KVR GLK+AL+ + A+ L V + LE+P+ +++++
Sbjct: 172 GVAHGPRGPTSYFYMLPMKVRVQGLKVALTVKLAQDNLHVVDSLEIPTSDPQYLMDLARY 231
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
VL I E +K A +L + +LP
Sbjct: 232 RHWGTSVLFVHVNEIPENIKSAANDLKTITILP 264
>gi|260432430|ref|ZP_05786401.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416258|gb|EEX09517.1| ribosomal protein, L4/L1 family [Silicibacter lacuscaerulensis
ITI-1157]
Length = 205
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 100/179 (55%), Gaps = 2/179 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L +F + R DI+HRVVRWQ Q GTH KT SE S +
Sbjct: 1 MKLDVIKLDGKKAGDIELDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSETSYST 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK +RQKGTG ARHG P FR G GP PRSH L KK R+LGL+ ALSA+A G
Sbjct: 61 KKIYRQKGTGGARHGDRNAPIFRKGGVYKGPTPRSHGHDLPKKFRKLGLRHALSAKAKAG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L+V + E KT + + K+ L+ DG ++E A +N+ +++LPS+
Sbjct: 121 ELVVIDAAEAEG-KTAALAKQVANL-GWKRALVIDGATVNEGFARAARNIEGLDILPSM 177
>gi|406944937|gb|EKD76572.1| 50S ribosomal protein L4 [uncultured bacterium]
Length = 211
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 99 LVIPVTNFFNEDK--GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
+ + V F NE K G VL VF V ++ D++H+VV Q A ++ TKT EV G
Sbjct: 1 MALNVKIFNNEGKVVGEQVLNPKVFGVKVKTDVVHQVVVSQAANVREAIAHTKTKGEVRG 60
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARA 215
G+KPW+QKGTGRAR G+ R PQ+RGG + GP+ R+ + K+NKK++RL L +ALS +
Sbjct: 61 GGRKPWKQKGTGRARQGSTRNPQWRGGGVVFGPRSNRNFSQKVNKKMKRLALAMALSDKV 120
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQN 267
A KLLV + + VP+ KTK + N + Q+ L G + A QN
Sbjct: 121 ANEKLLVVDSISVPAGKTKQLQNLFIQLPCKSAARLLALGAYDSNVIRAAQN 172
>gi|158319544|ref|YP_001512051.1| 50S ribosomal protein L4 [Alkaliphilus oremlandii OhILAs]
gi|166990945|sp|A8MLE1.1|RL4_ALKOO RecName: Full=50S ribosomal protein L4
gi|158139743|gb|ABW18055.1| ribosomal protein L4/L1e [Alkaliphilus oremlandii OhILAs]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 98/154 (63%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + + L+ +VF V + + ++ VV+ QLA R+QGT S KT +EV G G+K
Sbjct: 4 VAIYNVSGQQVSEIELSENVFGVEVNEHAMYEVVKNQLANRRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R P + GG + PKPR ++ + KKVRRL LK AL+++ +L
Sbjct: 64 PWKQKGTGRARVGSIRSPLWVGGGIVFAPKPRDYSYTIPKKVRRLALKSALTSKVNSNEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG 254
+V ++L++ + KTK +VN + KK L+ G
Sbjct: 124 IVLDELKLDAPKTKEMVNILKNLNVDKKALIVMG 157
>gi|302388087|ref|YP_003823909.1| 50S ribosomal protein L4 [Clostridium saccharolyticum WM1]
gi|302198715|gb|ADL06286.1| ribosomal protein L4/L1e [Clostridium saccharolyticum WM1]
Length = 206
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 93/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT +EVSG G+K
Sbjct: 4 VSVYNMEGKEVGTLELNDAVFGVDVNEHLVHMAVVSQLANKRQGTQKAKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ+ GG + P PR + I+LNKK RRL LK AL++R E K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKERRLALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V ++L+ KTK N ++ +K +++
Sbjct: 124 IVVDELKFDEIKTKKFQTVLNNLKVSKALVVM 155
>gi|218135280|ref|ZP_03464084.1| hypothetical protein BACPEC_03185 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990665|gb|EEC56676.1| 50S ribosomal protein L4 [[Bacteroides] pectinophilus ATCC 43243]
Length = 206
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 95/156 (60%), Gaps = 5/156 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L +F V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGSLELNDAIFGVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL++R + K+
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTSRVVDSKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTK--KVLLCDG 254
+V ++++ KTK N+ N M+N K K L+ G
Sbjct: 124 VVLDEIKFNEIKTK---NFANVMKNLKLDKALMVIG 156
>gi|418904613|ref|ZP_13458642.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377766153|gb|EHT89986.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 87/141 (61%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + S
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFESP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N + +E KKVL+
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVV 155
>gi|430748615|ref|YP_007211523.1| 50S ribosomal protein L4 [Thermobacillus composti KWC4]
gi|430732580|gb|AGA56525.1| 50S ribosomal protein L4, bacterial/organelle [Thermobacillus
composti KWC4]
Length = 208
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 93/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L+ VF + +H + Q A ++GTH TK SEVSG G+K
Sbjct: 4 VAVYNVSGAQVGEIELSDAVFGIEPHVHALHSAIVLQEAAERRGTHKTKGRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ++GG T+ GP PR++ KL KKVRRL ++ ALSA+ +L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWKGGGTVFGPLPRTYGFKLPKKVRRLAIRSALSAKVGASEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V ++L++ KTK N ++ +K L+
Sbjct: 124 IVLDELKLAKPKTKDFAGILNNLKVDRKALVV 155
>gi|380750078|gb|AFE48780.1| 50S ribosomal protein L4 [Staphylococcus pettenkoferi]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + D++ + Q A +QGTHS K SEV G G+KPWRQKGTGRAR
Sbjct: 15 GSVELNDAVFAIEPNNDVLFEAINLQRASLRQGTHSVKNRSEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS + E V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSYKVQENGFTVVDAFNFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNV 273
KTK N +E KKVL + +G ++ ++L+ +N+ V V
Sbjct: 135 KTKEFKNVLTNLEQPKKVLVVVEGEDVN--VELSARNIPGVQV 175
>gi|363898729|ref|ZP_09325251.1| 50S ribosomal protein L4 [Oribacterium sp. ACB1]
gi|395209095|ref|ZP_10398260.1| 50S ribosomal protein L4 [Oribacterium sp. ACB8]
gi|361960634|gb|EHL13870.1| 50S ribosomal protein L4 [Oribacterium sp. ACB1]
gi|394705696|gb|EJF13222.1| 50S ribosomal protein L4 [Oribacterium sp. ACB8]
Length = 206
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 89/153 (58%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L +F P+ + ++H V QLA ++QGT T SEVSG G+K
Sbjct: 4 VSVFNMQGKEVGKMDLNDAIFAAPVHEHLLHLAVVAQLANKRQGTQKALTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR + +NKK +R LK ALS AE KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWKGGGVVFAPTPRDYTTTMNKKEKRAALKSALSNAVAENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD 253
+V +++ KTK N N + K +L D
Sbjct: 124 IVVDEIHFDEIKTKNFQNMLNALNVQKAFVLLD 156
>gi|160941068|ref|ZP_02088406.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC
BAA-613]
gi|158436017|gb|EDP13784.1| hypothetical protein CLOBOL_05961 [Clostridium bolteae ATCC
BAA-613]
Length = 206
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGALELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I+LNKK +R L+ AL++R + K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALRSALTSRVQDNKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCD 253
+V ++L+ KTK N + ++ +K V+L D
Sbjct: 124 IVVDELKFDEIKTKKFQNVMDNLKVSKALVVLAD 157
>gi|418323019|ref|ZP_12934320.1| 50S ribosomal protein L4 [Staphylococcus pettenkoferi VCU012]
gi|365230673|gb|EHM71759.1| 50S ribosomal protein L4 [Staphylococcus pettenkoferi VCU012]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 97/163 (59%), Gaps = 3/163 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + D++ + Q A +QGTHS K SEV G G+KPWRQKGTGRAR
Sbjct: 15 GSVELNDAVFAIEPNNDVLFEAINLQRASLRQGTHSVKNRSEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS + E V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSYKVQENGFTVVDAFNFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNV 273
KTK N +E KKVL + +G ++ ++L+ +N+ V V
Sbjct: 135 KTKEFKNVLTNLEQPKKVLVVVEGEDVN--VELSARNIPGVQV 175
>gi|358066907|ref|ZP_09153396.1| 50S ribosomal protein L4 [Johnsonella ignava ATCC 51276]
gi|356694946|gb|EHI56598.1| 50S ribosomal protein L4 [Johnsonella ignava ATCC 51276]
Length = 206
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G M L +F + + + I+H V LA ++QGT KT EV G G+K
Sbjct: 4 VSVYDIEGKEVGDMELNDAIFGIEVNEHIVHMAVVAHLANKRQGTQKAKTRGEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR ++IKLNKK RRL LK AL++R + K
Sbjct: 64 PWRQKGTGHARQGSIRSPQWKGGGVVFAPTPRDYSIKLNKKERRLALKSALTSRVNDNKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V +D ++ KTK +V ++ +K +++
Sbjct: 124 IVVDDFKMDEIKTKKMVAALTNLKVSKALIVT 155
>gi|85374464|ref|YP_458526.1| 50S ribosomal protein L4 [Erythrobacter litoralis HTCC2594]
gi|122544174|sp|Q2N9B2.1|RL4_ERYLH RecName: Full=50S ribosomal protein L4
gi|84787547|gb|ABC63729.1| ribosomal protein L4 [Erythrobacter litoralis HTCC2594]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 103/179 (57%), Gaps = 1/179 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V + G + L VF V R DI+HRVV WQL R+ T+ S+V+ TG
Sbjct: 1 MKVKVQKIDGKAAGDVELDDAVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K RQKG+G ARHG P F GG HG + R LNKK+R LGLK+ALS++A +G
Sbjct: 61 AKFGRQKGSGNARHGDRGAPIFIGGGKAHGARKRDFNPSLNKKIRALGLKMALSSKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + L++ KTK + ++++ KVL+ DG ++E A NL VNVLP++
Sbjct: 121 -LVVVDSLDLKDAKTKVLKGHFDKAGWNGKVLVIDGESVNEGFSKAAGNLPGVNVLPAM 178
>gi|366087937|ref|ZP_09454422.1| 50S ribosomal protein L4 [Lactobacillus zeae KCTC 3804]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGTVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + + L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDSDLVVVDGLNFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ KTK N + ++ +K V+L DG + K A +NL V V+P+
Sbjct: 133 TPKTKAFQNVLDGLKVNEKALVVLEDGNEVAAK---AARNLPNVKVVPA 178
>gi|350565593|ref|ZP_08934344.1| 50S ribosomal protein L4 [Peptoniphilus indolicus ATCC 29427]
gi|348663600|gb|EGY80162.1| 50S ribosomal protein L4 [Peptoniphilus indolicus ATCC 29427]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 94/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E+ + L ++FD+ + + ++ VV+ LA ++QGT S KT SEV G G+K
Sbjct: 4 VQVINMNGENISEVELNEEIFDIEVNEHAVYLVVKNILANKRQGTKSAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQFRGG + PKPR + KKVRRL LK L+++ +G++
Sbjct: 64 PWRQKGTGRARQGSIRSPQFRGGGVVFAPKPRDFSYTTPKKVRRLALKSVLTSKLRDGEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V ++++ KTK N + KK L+
Sbjct: 124 IVLDNIKFDELKTKNFQKMLNAIGADKKALVV 155
>gi|118579120|ref|YP_900370.1| 50S ribosomal protein L4 [Pelobacter propionicus DSM 2379]
gi|166199839|sp|A1ALU2.1|RL4_PELPD RecName: Full=50S ribosomal protein L4
gi|118501830|gb|ABK98312.1| LSU ribosomal protein L4P [Pelobacter propionicus DSM 2379]
Length = 207
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 2/174 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N + G + LA DVF+ +++ ++H +R QLA R+ GT TKT SEV+G+GKK
Sbjct: 4 IAVYNMNRQQVGELQLADDVFNADVKEHLMHLALRIQLANRRAGTVKTKTRSEVAGSGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTG AR G +R PQ+ GG GP+P+ + + +NKK R+ + ALS + ++
Sbjct: 64 PFKQKGTGNARQGCVRAPQYPGGGVAFGPQPKEYHLSMNKKARKSAICSALSLQCKNNRI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
V + L+ S TK V++ + E + +++ D L+L+ +N+ +V +L
Sbjct: 124 TVMDKLDFSSISTKAFVDFMKRFEIERSLIITDD--FSNNLQLSCRNVPHVKLL 175
>gi|22547140|ref|NP_666500.1| 39S ribosomal protein L4, mitochondrial isoform b [Homo sapiens]
gi|12653925|gb|AAH00756.1| Mitochondrial ribosomal protein L4 [Homo sapiens]
gi|119604491|gb|EAW84085.1| mitochondrial ribosomal protein L4, isoform CRA_b [Homo sapiens]
Length = 263
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 118/238 (49%), Gaps = 8/238 (3%)
Query: 52 SGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDK 111
GLS LA T + P +L K + P + Q V + F E
Sbjct: 19 QGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPV-QAWVESLRGFEQERV 77
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRAR
Sbjct: 78 GLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L + + LE+P+
Sbjct: 138 HGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSVVRSTTQS 284
+++ + VLL D HE++ AT L N++P+V Q+
Sbjct: 198 GDPQYLTELAHYRRWGDSVLLVD--LTHEEMPQSIVEATSRLKTFNLIPAVGEQRAQA 253
>gi|408355487|ref|YP_006844018.1| 50S ribosomal protein L4 [Amphibacillus xylanus NBRC 15112]
gi|407726258|dbj|BAM46256.1| 50S ribosomal protein L4 [Amphibacillus xylanus NBRC 15112]
Length = 207
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 98/177 (55%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + L VF + ++H V Q A ++QGTH+ K S VSG
Sbjct: 1 MPKLALYNQSGSQVGDIELNDAVFGIEPNTHVLHDAVVMQQASKRQGTHAVKNRSAVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS+A KL KKVRRL L+ ALS + E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYAYKLPKKVRRLALRSALSTKVKE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L V E L + KTK I+ + +K L+ E + + NL V VL
Sbjct: 121 ESLTVLEGLTIEVPKTKEIIKLLAALNINEKALIVTNQK-DEVVAKSASNLQNVKVL 176
>gi|283796558|ref|ZP_06345711.1| ribosomal protein L4/L1 family protein [Clostridium sp. M62/1]
gi|291075972|gb|EFE13336.1| 50S ribosomal protein L4 [Clostridium sp. M62/1]
gi|295092548|emb|CBK78655.1| LSU ribosomal protein L4P [Clostridium cf. saccharolyticum K10]
Length = 204
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 83/134 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGNEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR + I+LNKK +RL LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYTIRLNKKEKRLALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTK 234
+V ++L KTK
Sbjct: 124 IVVDELSFAEIKTK 137
>gi|302669962|ref|YP_003829922.1| 50S ribosomal protein L4 [Butyrivibrio proteoclasticus B316]
gi|302394435|gb|ADL33340.1| ribosomal protein L4 RplD [Butyrivibrio proteoclasticus B316]
Length = 207
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 98/178 (55%), Gaps = 4/178 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ +F V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGKIDLSDAIFGVEVNEHLVHMAVLQQLADNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR ++ K+NKK +R LK AL+ + +
Sbjct: 64 PWRQKGTGHARQGSIRAPQWKGGGVVFAPVPRDYSFKMNKKEKRAALKSALTDKVQNNNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC----DGGCIHEKLKLATQNLHYVNVL 274
+V ++L+ KTK N + T+K L+ D + LA N N L
Sbjct: 124 VVVDELKFDEIKTKRFAEVMNNLNATRKALVVLADNDQNVVLSARNLAEANTTLTNTL 181
>gi|271962633|ref|YP_003336829.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021]
gi|270505808|gb|ACZ84086.1| 50S ribosomal protein L4 [Streptosporangium roseum DSM 43021]
Length = 215
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 93/155 (60%), Gaps = 5/155 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + L GD+FD + +IH+VV QLA R+QGTH KT EVSG GKK
Sbjct: 4 IDVLDVSGAKTGTVDLPGDIFDAKVNIPLIHQVVVAQLAARRQGTHKAKTRGEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G+ R PQF GG +HGP PR ++ K KK++ L+ ALS RA G++
Sbjct: 64 PYRQKGTGRARQGSTRAPQFAGGGIVHGPLPRDYSQKTPKKMKAAALRGALSDRANGGRV 123
Query: 221 LVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLC 252
V L E P KTK + ++ T+ VL+
Sbjct: 124 HVVSALVQGETP--KTKAALESLRKITQTRSVLVV 156
>gi|297703540|ref|XP_002828694.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Pongo abelii]
Length = 311
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 117/231 (50%), Gaps = 8/231 (3%)
Query: 52 SGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDK 111
GLS LA T + P +L K + P + Q V + F E
Sbjct: 19 QGLSSLAEEAARPTENPEQVANEGLPEPVLRKVELPVPAHRRPV-QAWVESLRGFEQERV 77
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L DVF + R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRAR
Sbjct: 78 GLADLHPDVFAIAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L + + LE+P+
Sbjct: 138 HGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKMALTVKLAQDDLHIMDSLELPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSV 277
+++ + VLL D HE++ AT L N++P+V
Sbjct: 198 GDPQYLTELAHYRRWGDSVLLVD--LTHEEMPQSIVEATSRLKTFNLIPAV 246
>gi|339624378|ref|ZP_08660167.1| 50S ribosomal protein L4 [Fructobacillus fructosus KCTC 3544]
Length = 207
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
+VF V +I V Q A +QGTH+ K S VSG G+KPW+QKGTGRAR G++R P
Sbjct: 22 EVFAVEANNAVITEAVLMQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRARQGSIRSP 81
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTK-FIV 237
Q+RGG + GP PRS+A ++NKK L LK ALS + A+ KL+V + L KTK F
Sbjct: 82 QWRGGGIVFGPTPRSYAYRINKKAYNLALKSALSQKVADNKLVVVDALAFSEAKTKDFKQ 141
Query: 238 NYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
N ++K +++ DG +E A +NL V V+ +
Sbjct: 142 VLANLAVDSKALVIVDGN--NENAIRAARNLANVQVMTA 178
>gi|433645835|ref|YP_007290837.1| LSU ribosomal protein L4P [Mycobacterium smegmatis JS623]
gi|433295612|gb|AGB21432.1| LSU ribosomal protein L4P [Mycobacterium smegmatis JS623]
Length = 231
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L I V + G + L ++FDV ++H+VV QLA ++QGTHSTKT EV G G
Sbjct: 6 LKIDVNTPAGKKDGSVELPAELFDVEPNIALMHQVVEAQLAAKRQGTHSTKTRGEVRGGG 65
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK+ L+ ALS RA G
Sbjct: 66 KKPYRQKGTGRARQGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIAAALRGALSDRARNG 125
Query: 219 KL-LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V E +E + TK + + K+VL+ G E L+ +NL V++L
Sbjct: 126 RIHAVTELVEGQTPSTKSAKAFLATLTENKQVLVVIGRA-DETGALSARNLPGVHIL 181
>gi|340376317|ref|XP_003386680.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Amphimedon
queenslandica]
Length = 252
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E G L VF R DI+ RVV WQLAK++ GT KT EV G G+KPW QKG G
Sbjct: 51 ERLGIFKLDNRVFSCSPRLDILQRVVIWQLAKKRAGTAKVKTRGEVRGGGRKPWPQKGHG 110
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRS-HAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
+AR G++R P ++GG +HGP+ + ++ L KKV+ LGL ALS + + L+V +DL
Sbjct: 111 QARQGSIRAPHWKGGGVVHGPRGNADYSYTLPKKVKALGLCTALSVKYTQNDLMVVDDLT 170
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGG-CIHEKLKLATQNLHYVNVLPS 276
V ++ TK ++ + + K VLL DGG ++ + ++ N+ +V++LPS
Sbjct: 171 VNNNNTKNLLRILD-IHGLKSVLLVDGGDYVNMSIAMSGGNIPHVDLLPS 219
>gi|22547136|ref|NP_057040.2| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
gi|22547138|ref|NP_666499.1| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
gi|74733471|sp|Q9BYD3.1|RM04_HUMAN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|13559361|dbj|BAB40840.1| mitochondrial ribosomal protein L4 (L4mt) [Homo sapiens]
gi|14602670|gb|AAH09858.1| Mitochondrial ribosomal protein L4 [Homo sapiens]
gi|119604489|gb|EAW84083.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens]
gi|119604490|gb|EAW84084.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens]
Length = 311
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 116/230 (50%), Gaps = 8/230 (3%)
Query: 53 GLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKG 112
GLS LA T + P +L K + P + Q V + F E G
Sbjct: 20 GLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPV-QAWVESLRGFEQERVG 78
Query: 113 FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARH 172
L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRARH
Sbjct: 79 LADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARH 138
Query: 173 GTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L + + LE+P+
Sbjct: 139 GSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPTG 198
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSV 277
+++ + VLL D HE++ AT L N++P+V
Sbjct: 199 DPQYLTELAHYRRWGDSVLLVD--LTHEEMPQSIVEATSRLKTFNLIPAV 246
>gi|291518044|emb|CBK73265.1| LSU ribosomal protein L4P [Butyrivibrio fibrisolvens 16/4]
Length = 206
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 105/188 (55%), Gaps = 8/188 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G M L +F V I + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVFNMEGKEVGSMDLNDSIFAVEINEHLVHMAVVQQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++ E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSVVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V ++L++ S KTK + K +++ D + + ++ +N +P+V +
Sbjct: 124 IVVDELKLDSIKTKDFAKVLTNLNVEKALVVLDTN--DQNVVMSAKN------IPTVKTA 175
Query: 281 TTQSFLIY 288
T + +Y
Sbjct: 176 LTNTINVY 183
>gi|381181875|ref|ZP_09890703.1| 50S ribosomal protein L4 [Listeriaceae bacterium TTU M1-001]
gi|380318250|gb|EIA21541.1| 50S ribosomal protein L4 [Listeriaceae bacterium TTU M1-001]
Length = 207
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +D G + L VF + + ++ V+ Q A +QGTH K SEV G
Sbjct: 1 MPKLSLLKQDGSKAGEITLNDAVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS++ +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V E+L + KTK + + K L+ + ++L+ +N+ + V+P+
Sbjct: 121 ENIVVLENLAFDAPKTKDFAAFLKNISVDSKALIVVASE-SDNVELSARNIQGITVIPA 178
>gi|167749438|ref|ZP_02421565.1| hypothetical protein EUBSIR_00392 [Eubacterium siraeum DSM 15702]
gi|167657610|gb|EDS01740.1| 50S ribosomal protein L4 [Eubacterium siraeum DSM 15702]
Length = 206
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 9/180 (5%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L ++F + ++H V LA ++QGT ST T +EVSG GKKPWRQKGTG AR G+
Sbjct: 19 LNDNIFGIEPNTVVMHAAVVNYLANQRQGTQSTLTRTEVSGGGKKPWRQKGTGHARQGST 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ G GPKPRS+ LNKKV+RL LK ALSA+ +G ++V + + KTK
Sbjct: 79 RAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQDGSMIVVDSITADEFKTKT 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFD 295
IVN + K +++ + + EK+ + N +P V++T + L Y L ++
Sbjct: 139 IVNMLKALSADKALIVLN--SVDEKVIKSAAN------IPG-VKTTQANTLNVYDILKYN 189
>gi|116624201|ref|YP_826357.1| 50S ribosomal protein L4 [Candidatus Solibacter usitatus Ellin6076]
gi|122253083|sp|Q01W93.1|RL4_SOLUE RecName: Full=50S ribosomal protein L4
gi|116227363|gb|ABJ86072.1| LSU ribosomal protein L4P [Candidatus Solibacter usitatus
Ellin6076]
Length = 208
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 106/176 (60%), Gaps = 1/176 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + N+ + LA DVF + + +++ VR A + GTH+TK EVSG+GKK
Sbjct: 4 VDVVDLNNQVVSSVELADDVFGAEVNQSLLYEAVRQYQASLRAGTHATKVRREVSGSGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
W+QKGTGRAR G++R P +R G T+HGP+PR +A KL KK+ L+ ALSA+ +G+L
Sbjct: 64 LWKQKGTGRARIGSVRSPLWRHGATVHGPQPRDYAYKLPKKMLLGALRSALSAKVRDGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
V ++ HKTK + +++E + VL+ D + L+L +NL V +L +
Sbjct: 124 KVVQNFNFSDHKTKNAMGALSKLEAGRTVLVVDNED-NRNLELGIRNLKGVTLLAT 178
>gi|291532094|emb|CBK97679.1| LSU ribosomal protein L4P [Eubacterium siraeum 70/3]
gi|291558165|emb|CBL35282.1| LSU ribosomal protein L4P [Eubacterium siraeum V10Sc8a]
Length = 206
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 9/180 (5%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L ++F + ++H V LA ++QGT ST T +EVSG GKKPWRQKGTG AR G+
Sbjct: 19 LNDNIFGIEPNTVVMHAAVVNYLANQRQGTQSTLTRTEVSGGGKKPWRQKGTGHARQGST 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ G GPKPRS+ LNKKV+RL LK ALSA+ +G ++V + + KTK
Sbjct: 79 RAPQWTHGGVALGPKPRSYTYSLNKKVKRLALKSALSAKVQDGSMIVVDSITADEFKTKT 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFD 295
IVN + K +++ + + EK+ + N +P V++T + L Y L ++
Sbjct: 139 IVNMLKALSADKALIVLN--SVDEKVIKSAAN------IPG-VKTTQANTLNVYDILKYN 189
>gi|225571553|ref|ZP_03780549.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM
15053]
gi|225159630|gb|EEG72249.1| hypothetical protein CLOHYLEM_07651 [Clostridium hylemonae DSM
15053]
Length = 206
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 95/161 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVEVNEHLVHMAVVSQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL+ + E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNKKEKRAALKSALTTKVEEKKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKL 261
+V +++ KTK N ++ +K +++ + G + +L
Sbjct: 124 IVVDEIAFDEIKTKNFANVLKNLDVSKALVVLEDGNTNAEL 164
>gi|154253178|ref|YP_001414002.1| 50S ribosomal protein L4 [Parvibaculum lavamentivorans DS-1]
gi|171769628|sp|A7HWR2.1|RL4_PARL1 RecName: Full=50S ribosomal protein L4
gi|154157128|gb|ABS64345.1| ribosomal protein L4/L1e [Parvibaculum lavamentivorans DS-1]
Length = 206
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I VT + G + L VF + R DI+HR+V WQLAKRQ GTH TK SE++ TGKK
Sbjct: 3 IDVTTLEAKKAGSVDLTDGVFALEPRGDILHRMVAWQLAKRQAGTHKTKGRSEIALTGKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+QKG+G ARHG + PQFRGG GP RSHA + KKVR L LK+ALSA+A L
Sbjct: 63 FVKQKGSGGARHGDRKAPQFRGGGKAFGPVVRSHAFDMPKKVRALALKLALSAKAKSDNL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ ++ ++ +TK + + ++ K VL+ DG + LA +NL V+VLP
Sbjct: 123 VILDEAKLAEPRTKAAKDAFEKL-GLKSVLIIDGAELDANFALAARNLPNVDVLP 176
>gi|333918148|ref|YP_004491729.1| 50S ribosomal protein L4 [Amycolicicoccus subflavus DQS3-9A1]
gi|333480369|gb|AEF38929.1| 50S ribosomal protein L4 [Amycolicicoccus subflavus DQS3-9A1]
Length = 232
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 94/146 (64%), Gaps = 5/146 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P+ ++H+VV QLA +QGTHSTKT +EVSG GKKP+RQKGTGRAR
Sbjct: 26 GTVDLPAEIFDAPVNVALMHQVVVAQLAAARQGTHSTKTRAEVSGGGKKPYRQKGTGRAR 85
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA ++ V ++ +
Sbjct: 86 QGSTRAPQFVGGGTVHGPKPRDYSQRTPKKMIAGALRSALSDRARSERIHVITEVVAGQE 145
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDG 254
PS TK ++ Q+ + K LL G
Sbjct: 146 PS--TKAAKTFFAQISDRNKFLLVVG 169
>gi|340753383|ref|ZP_08690169.1| 50S ribosomal protein L4 [Fusobacterium sp. 2_1_31]
gi|422315194|ref|ZP_16396633.1| 50S ribosomal protein L4 [Fusobacterium periodonticum D10]
gi|229422975|gb|EEO38022.1| 50S ribosomal protein L4 [Fusobacterium sp. 2_1_31]
gi|404592777|gb|EKA94530.1| 50S ribosomal protein L4 [Fusobacterium periodonticum D10]
Length = 209
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + K ++H V+ +LA +QGT STKT + V G G+KP++QKGTGRAR G++R P
Sbjct: 23 VFGIEPNKVVLHEVLTAELAAARQGTASTKTRAMVRGGGRKPFKQKGTGRARQGSIRAPH 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
GG GP PRS+ K+NKKVR L L+ ALSA+ A G +LV + + + KTK IVN
Sbjct: 83 MVGGGVTFGPHPRSYEKKVNKKVRNLALRSALSAKVAAGNVLVLDYEGIDTPKTKVIVNL 142
Query: 240 YNQMENTKKVLLCDGGCIHE-KLKLATQNLHYVNVL 274
N+++ +K L G I + L L+ +NL +L
Sbjct: 143 VNKVDAKQKQLFVVGDLIKDYNLYLSARNLENAVIL 178
>gi|332852922|ref|XP_001164062.2| PREDICTED: 39S ribosomal protein L4, mitochondrial isoform 5 [Pan
troglodytes]
gi|410206720|gb|JAA00579.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
gi|410253658|gb|JAA14796.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
gi|410305182|gb|JAA31191.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
gi|410332115|gb|JAA35004.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
Length = 311
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 116/231 (50%), Gaps = 8/231 (3%)
Query: 52 SGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDK 111
GLS LA T + P +L K + P + Q V + F E
Sbjct: 19 QGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPV-QAWVESLRGFEQERV 77
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRAR
Sbjct: 78 GLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L + + LE+P+
Sbjct: 138 HGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDSLELPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSV 277
+++ + VLL D HE++ AT L N++P+V
Sbjct: 198 GDPQYLTELAHYRRWGDSVLLVD--LTHEEMPQSIVEATSRLKTFNLIPAV 246
>gi|293402502|ref|ZP_06646637.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291304016|gb|EFE45270.1| ribosomal protein L4/L1 family protein [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 209
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 98/176 (55%), Gaps = 7/176 (3%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ LA VF + + I + Q A +QGTH TK +EV G G+KPWRQKGTGRAR G
Sbjct: 17 ITLADTVFGIEPNQQCIFDAIVMQRASMRQGTHDTKNRTEVRGGGRKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R Q+RGG T+ GP PRS+A KLNKKVRRL LK LS + AE + V + E+ + KT
Sbjct: 77 SIRATQWRGGGTVFGPTPRSYAYKLNKKVRRLALKSVLSEKVAENAMSVVDKFELEAPKT 136
Query: 234 KFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIY 288
K + +K L + G E L+ +N +PS++ T +Y
Sbjct: 137 KAFNEIIANLNAPRKTLFVVSEGEDFENAFLSMRN------IPSMMMLTADGLNVY 186
>gi|164686528|ref|ZP_02210556.1| hypothetical protein CLOBAR_00095 [Clostridium bartlettii DSM
16795]
gi|164604397|gb|EDQ97862.1| 50S ribosomal protein L4 [Clostridium bartlettii DSM 16795]
Length = 207
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 93/150 (62%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N ++ G + L+ VF V + + +++ VV+ QLA ++QGT S KT +EV G G+KPW
Sbjct: 6 VLNIQGQNVGEIELSDAVFGVEVNEHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R Q+ GG PKPRS+ L KKVRRL +K AL+++ +++V
Sbjct: 66 RQKGTGRARQGSIRAVQWIGGGVAFAPKPRSYRYTLPKKVRRLAMKSALTSKVQANEMIV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+ L + + KTK N + KK L+
Sbjct: 126 LDALTMDAPKTKEFATILNNVNAAKKALVV 155
>gi|420143556|ref|ZP_14651053.1| 50S ribosomal protein L4 [Lactococcus garvieae IPLA 31405]
gi|391856427|gb|EIT66967.1| 50S ribosomal protein L4 [Lactococcus garvieae IPLA 31405]
Length = 208
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 99/172 (57%), Gaps = 3/172 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L VF + + ++ VV Q A +QGTH+ K S VSG GKKP
Sbjct: 5 SLFKQDGTQAGEVTLNDAVFGIEPNETVVFDVVLSQRASLRQGTHAHKNRSLVSGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G++R PQFRGG T+ GP PRS+A KL +KVR+L LK A S + + LL
Sbjct: 65 WRQKGTGRARQGSIRSPQFRGGGTVFGPNPRSYAYKLPQKVRQLALKSAYSQKVIDNTLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
++L + KT + +KVL+ +E +L+ +NL V V
Sbjct: 125 AVDELNFSAPKTSEFAKVLEALSIERKVLVVLPNEGNEFAELSARNLKNVKV 176
>gi|363423639|ref|ZP_09311702.1| 50S ribosomal protein L4 [Rhodococcus pyridinivorans AK37]
gi|359731577|gb|EHK80619.1| 50S ribosomal protein L4 [Rhodococcus pyridinivorans AK37]
Length = 227
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/179 (41%), Positives = 105/179 (58%), Gaps = 6/179 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V + G + L ++FD P ++H+VV QLA +QGTH+TKT EV G G
Sbjct: 10 LTLDVKAPGGQTSGSVDLPAEIFDAPANIALLHQVVTAQLAAARQGTHATKTRGEVRGGG 69
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 70 KKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 129
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V +L + PS TK + ++ + KKVLL G K + QNL V+ L
Sbjct: 130 RIHVITELVAGQTPS--TKSARTFLGEISDRKKVLLVVGREDVAAWK-SVQNLPNVHAL 185
>gi|47212296|emb|CAF90559.1| unnamed protein product [Tetraodon nigroviridis]
Length = 302
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 103/172 (59%), Gaps = 2/172 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
+E G L DVF VP R DI+H V WQ ++ TK +EV G G+KPWRQKG+
Sbjct: 83 SEPVGVAHLHPDVFAVPPRLDILHMVETWQRNFKRISHAHTKVRAEVRGGGRKPWRQKGS 142
Query: 168 GRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
GRARHG++R P +RGG HGP+ P S+ L KVR LGLK+ALS++ A+ L V E L
Sbjct: 143 GRARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVLGLKVALSSKLAQSHLHVVESL 202
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPSV 277
+PS +++++ + + +LL + + E + AT L +NV+P++
Sbjct: 203 NLPSPDPQYLLDLARRRHWGESLLLVHESEELPEDVLQATATLKSINVIPAL 254
>gi|225027479|ref|ZP_03716671.1| hypothetical protein EUBHAL_01735 [Eubacterium hallii DSM 3353]
gi|224955214|gb|EEG36423.1| 50S ribosomal protein L4 [Eubacterium hallii DSM 3353]
Length = 198
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 109/184 (59%), Gaps = 9/184 (4%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ +F VP+ + ++H+ V QLA ++QGT KT SEV G G+KPWRQKGTG AR
Sbjct: 7 GTIELSDSIFAVPVNEHLVHQAVVAQLANKRQGTQKAKTRSEVRGGGRKPWRQKGTGHAR 66
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG + P PR +++K+NKK ++L +K L+++ E K +V ++L++
Sbjct: 67 QGSIRAPQWTGGGVVFAPTPRDYSVKMNKKEKQLAMKSVLTSKVNESKFIVLDELKLAEI 126
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYF 291
KTK I + ++ K +++ EK + ++ N LP V +T + + Y
Sbjct: 127 KTKQIKAVLDNLKVEKALIVT-----KEKDDVVVKS---ANNLPKVA-TTALNNINVYDI 177
Query: 292 LDFD 295
L +D
Sbjct: 178 LKYD 181
>gi|168181865|ref|ZP_02616529.1| 50S ribosomal protein L4 [Clostridium botulinum Bf]
gi|237796941|ref|YP_002864493.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657]
gi|259491549|sp|C3KVQ0.1|RL4_CLOB6 RecName: Full=50S ribosomal protein L4
gi|182674730|gb|EDT86691.1| 50S ribosomal protein L4 [Clostridium botulinum Bf]
gi|229261648|gb|ACQ52681.1| 50S ribosomal protein L4 [Clostridium botulinum Ba4 str. 657]
Length = 206
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V +D+++ + KTK +V N N KK L+ E + + +N+ V ++P
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAF-NAKKTLIITNNA-EENVYKSARNIEGVQIIP 176
>gi|259047554|ref|ZP_05737955.1| 50S ribosomal protein L4 [Granulicatella adiacens ATCC 49175]
gi|259035745|gb|EEW37000.1| 50S ribosomal protein L4 [Granulicatella adiacens ATCC 49175]
Length = 207
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 91/150 (60%), Gaps = 3/150 (2%)
Query: 106 FFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
F +D G + L D+F + ++++ V Q A +QGTH+ K S VSG G+KPW
Sbjct: 6 LFKQDGTTNGEIELNSDIFGIEPNENVVFDAVIMQRASLRQGTHAVKNRSAVSGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + + KL+V
Sbjct: 66 RQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSQKVLDNKLVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
E L+ + KTK + + KVL+
Sbjct: 126 VEALQFDAPKTKEFAQVLSNLNVDTKVLVV 155
>gi|303284373|ref|XP_003061477.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456807|gb|EEH54107.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 252
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Query: 98 DLVIPVTNFFNEDKG-FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
D +PV G ++L G FD P+R D++HRVV WQ K ++G TKT EVSG
Sbjct: 1 DKTLPVFTIDGTPTGETLILPGRHFDQPLRVDLVHRVVHWQRNKARKGRKKTKTRGEVSG 60
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAA 216
T +K QKG GRAR G+LR PQ RGG HGP RS+ LNK+VRR GLK+ALSA+ A
Sbjct: 61 TTRKARPQKGGGRARVGSLRAPQMRGGGVAHGPVVRSYETALNKRVRRAGLKVALSAKLA 120
Query: 217 EGK-LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIH----EKLKLATQNLHYV 271
EG+ +LV + KTK++ +++ + L G H K A++N+ YV
Sbjct: 121 EGRVMLVRSTHDGVEPKTKWLDERLDKLLGNQS--LAAGERSHSTWISNAKRASRNMPYV 178
Query: 272 NVL 274
+V+
Sbjct: 179 HVM 181
>gi|392961451|ref|ZP_10326909.1| ribosomal protein L4/L1e [Pelosinus fermentans DSM 17108]
gi|421056311|ref|ZP_15519238.1| ribosomal protein L4/L1e [Pelosinus fermentans B4]
gi|421058315|ref|ZP_15521027.1| ribosomal protein L4/L1e [Pelosinus fermentans B3]
gi|421064621|ref|ZP_15526482.1| ribosomal protein L4/L1e [Pelosinus fermentans A12]
gi|421072710|ref|ZP_15533814.1| ribosomal protein L4/L1e [Pelosinus fermentans A11]
gi|392438727|gb|EIW16550.1| ribosomal protein L4/L1e [Pelosinus fermentans B4]
gi|392445137|gb|EIW22469.1| ribosomal protein L4/L1e [Pelosinus fermentans A11]
gi|392453708|gb|EIW30571.1| ribosomal protein L4/L1e [Pelosinus fermentans DSM 17108]
gi|392460781|gb|EIW37043.1| ribosomal protein L4/L1e [Pelosinus fermentans A12]
gi|392461124|gb|EIW37352.1| ribosomal protein L4/L1e [Pelosinus fermentans B3]
Length = 209
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 105/176 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V + + ++H+ V QLA ++ GT STKT V G G+K
Sbjct: 4 VAVYDITGAKTGELELNDSVFGVEVNEAVLHQAVVMQLASQRLGTASTKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T GP+PRS+A ++ +K RRL +K AL+A+ +G+L
Sbjct: 64 PWKQKGTGRARAGSTRSPIWVGGGTTFGPQPRSYAFRMPRKQRRLAIKSALTAKLQDGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V + + + KTK ++N + + K L G + E ++ + +N+ V +P+
Sbjct: 124 VVVDSIAFDAPKTKNVINMLSGFDAANKKSLIITGEVIENVEKSARNIPGVKAIPA 179
>gi|418315622|ref|ZP_12927079.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21340]
gi|365243062|gb|EHM83753.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21340]
Length = 207
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 87/141 (61%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N + +E KKVL+
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVV 155
>gi|325288579|ref|YP_004264760.1| 50S ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271]
gi|324963980|gb|ADY54759.1| LSU ribosomal protein L4P [Syntrophobotulus glycolicus DSM 8271]
Length = 209
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 103/171 (60%), Gaps = 1/171 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L +F V ++H VV Q+A + GTHST SEV G G+K
Sbjct: 4 VQVVNMQGSPVGEIELNERIFGVTPNIGVMHSVVVAQMANARVGTHSTLGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR GT+R P +RGG + GPKPR ++ K+ KKV+RL L ALS++ E L
Sbjct: 64 PWRQKGTGRARAGTIRSPLWRGGGIVFGPKPRDYSKKVPKKVKRLALCSALSSKVNESNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
+V +DL+ + KTK +V + ++ +K L+ G + ++L+ +N+ V
Sbjct: 124 IVVDDLKFDAPKTKDMVKFLEAIKVDRKALVVTEGS-DKNVQLSARNIQGV 173
>gi|404372642|ref|ZP_10977937.1| 50S ribosomal protein L4 [Clostridium sp. 7_2_43FAA]
gi|226911220|gb|EEH96421.1| 50S ribosomal protein L4 [Clostridium sp. 7_2_43FAA]
Length = 206
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L +VF V + D +H+VV LA ++QGT S KT +EV G
Sbjct: 1 MPTVGLFNQEGKQVGDIQLNDNVFGVEVNTDAMHQVVVALLANKRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +RR+ +K AL+++ +
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGIVFAPKPRDYRMSVPKSMRRVAMKSALTSKVQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
G+++V E L + KTK +V + KK L+ G +E L + +N+ V ++P
Sbjct: 121 GQMVVLETLAFEAPKTKKMVEVLKAFD-AKKTLIITGES-NEVLYKSARNIADVQIMP 176
>gi|414157744|ref|ZP_11414040.1| 50S ribosomal protein L4 [Streptococcus sp. F0441]
gi|410871662|gb|EKS19609.1| 50S ribosomal protein L4 [Streptococcus sp. F0441]
Length = 207
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLSNVK----VATATTASVL 184
>gi|339504869|ref|YP_004692289.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149]
gi|338758862|gb|AEI95326.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149]
Length = 205
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH KT SEV+ + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FRGG GPK RSH +L KK R+LGL ALSA+ G+L++ +D+ +
Sbjct: 82 FRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAGELVIIDDVSSDGKTSALAKQV 141
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
N K+ L+ DG ++E A +N+ +++LP++
Sbjct: 142 ANL--GWKRALIIDGATVNETFAQAARNIDGLDILPTM 177
>gi|310659501|ref|YP_003937222.1| 50S ribosomal subunit protein L4 [[Clostridium] sticklandii]
gi|308826279|emb|CBH22317.1| 50S ribosomal subunit protein L4 [[Clostridium] sticklandii]
Length = 207
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + + L+ +F I + ++ V++ LA R+QGT S KT +EV G G+K
Sbjct: 4 VDVLNINGQKVEELELSESIFAAEISEYAVYEVIKNHLANRRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R PQ+ GG + PKPR ++ +NKKVRRL LK L+ + EG L
Sbjct: 64 PWRQKGTGRARQGSTRSPQWIGGGVVFAPKPRDYSYSVNKKVRRLALKSVLTTKVNEGNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + LE+ + KTK + + + KK L+
Sbjct: 124 IVLDALEMNAPKTKDFIAMLSAVNAGKKALVV 155
>gi|260584417|ref|ZP_05852164.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633]
gi|260157935|gb|EEW93004.1| 50S ribosomal protein L4/L1 [Granulicatella elegans ATCC 700633]
Length = 207
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+F + ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEIELNSDIFGIEPNENVVFDAVIMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL +KVRRL +K LS + + KL+V E L+ +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVLDQKLVVVEALQFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK ++ KVL+ +E +LA +N+ V V+
Sbjct: 135 KTKEFAQVLANLKVDTKVLVVVESS-NEFAQLAARNIPNVTVV 176
>gi|421078694|ref|ZP_15539644.1| ribosomal protein L4/L1e [Pelosinus fermentans JBW45]
gi|392523170|gb|EIW46346.1| ribosomal protein L4/L1e [Pelosinus fermentans JBW45]
Length = 209
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 105/176 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V + + ++H+ V QLA ++ GT STKT V G G+K
Sbjct: 4 VAVYDITGAKTGELELNDSVFGVEVNEAVLHQAVVMQLASQRLGTASTKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T GP+PRS+A ++ +K RRL +K AL+A+ +G+L
Sbjct: 64 PWKQKGTGRARAGSTRSPIWVGGGTTFGPQPRSYAFRMPRKQRRLAIKSALTAKLQDGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V + + + KTK ++N + + K L G + E ++ + +N+ V +P+
Sbjct: 124 VVVDSITFDAPKTKNVINMLSGFDAANKKSLIITGEVVENVEKSARNIPGVKAIPA 179
>gi|58336631|ref|YP_193216.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM]
gi|227903188|ref|ZP_04020993.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796]
gi|75433039|sp|Q5FM89.1|RL4_LACAC RecName: Full=50S ribosomal protein L4
gi|58253948|gb|AAV42185.1| 50S ribosomal protein L4 [Lactobacillus acidophilus NCFM]
gi|227868993|gb|EEJ76414.1| 50S ribosomal protein L4 [Lactobacillus acidophilus ATCC 4796]
Length = 205
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + +++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLIDNDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V V+P
Sbjct: 124 IVLDKLTMSAPKTKELVSMLNSLNADGKVLIV---SDDNNVQLSARNLAKVKVVP 175
>gi|417895551|ref|ZP_12539537.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21235]
gi|341841679|gb|EGS83132.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21235]
Length = 207
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 87/141 (61%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N + +E KKVL+
Sbjct: 135 KTKEFKNVLSTLEQLKKVLVV 155
>gi|254418759|ref|ZP_05032483.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3]
gi|196184936|gb|EDX79912.1| ribosomal protein L4/L1 family [Brevundimonas sp. BAL3]
Length = 212
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+ V + G + L+ VF + IR DI+ R V WQLAKR+ GTH +T +E S TGK
Sbjct: 3 LSVIQLDGKAAGDVELSDAVFGISDIRGDILARTVNWQLAKRRAGTHKVQTRNENSRTGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K ++QKGTG ARHG+ R PQF GG+ GP R H L KK+R L L+ ALS++A G
Sbjct: 63 KMYKQKGTGGARHGSRRAPQFVGGSRAFGPVVRDHGFSLPKKIRALALRHALSSKAKSGD 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+V + + V KT + ++ TK +++ G + LA +N+ +++VLP+
Sbjct: 123 LIVVDTVSVKEAKTASLRETLGKLGWTKALIIA-GPEVDTNFGLAARNIPHIDVLPNA 179
>gi|421765781|ref|ZP_16202562.1| LSU ribosomal protein L4p (L1e) [Lactococcus garvieae DCC43]
gi|407625866|gb|EKF52554.1| LSU ribosomal protein L4p (L1e) [Lactococcus garvieae DCC43]
Length = 208
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 99/172 (57%), Gaps = 3/172 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L VF + + ++ VV Q A +QGTH+ K S VSG GKKP
Sbjct: 5 SLFKQDGTQAGEVTLNDAVFGIEPNETVVFDVVLSQRASLRQGTHAHKNRSLVSGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G++R PQFRGG T+ GP PRS+A KL +KVR+L LK A S + + LL
Sbjct: 65 WRQKGTGRARQGSIRSPQFRGGGTVFGPNPRSYAYKLPQKVRQLALKSAYSQKVIDNTLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
++L + KT + +KVL+ +E +L+ +NL V V
Sbjct: 125 AVDELNFSAPKTSEFAKVLEALSIERKVLVVLPNEGNEFAELSARNLKNVKV 176
>gi|170754589|ref|YP_001783120.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra]
gi|226730644|sp|B1IGF3.1|RL4_CLOBK RecName: Full=50S ribosomal protein L4
gi|169119801|gb|ACA43637.1| 50S ribosomal protein L4 [Clostridium botulinum B1 str. Okra]
Length = 206
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKIDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAMKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V +D+++ + KTK +V N + K +++ + E + + +N+ V ++P
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNSFDAKKTLIITNNA--EENVYKSARNIEGVQIIP 176
>gi|15925239|ref|NP_372773.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50]
gi|15927829|ref|NP_375362.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315]
gi|21283897|ref|NP_646985.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2]
gi|49487031|ref|YP_044252.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650833|ref|YP_187048.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL]
gi|82751838|ref|YP_417579.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122]
gi|87160155|ref|YP_494838.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88196161|ref|YP_500978.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|148268689|ref|YP_001247632.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH9]
gi|150394754|ref|YP_001317429.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus JH1]
gi|151222363|ref|YP_001333185.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156980564|ref|YP_001442823.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3]
gi|221140149|ref|ZP_03564642.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253317009|ref|ZP_04840222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253729915|ref|ZP_04864080.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253734342|ref|ZP_04868507.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
TCH130]
gi|255007029|ref|ZP_05145630.2| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257794595|ref|ZP_05643574.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781]
gi|258408803|ref|ZP_05681087.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763]
gi|258422402|ref|ZP_05685314.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719]
gi|258422696|ref|ZP_05685601.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635]
gi|258439791|ref|ZP_05690537.1| ribosomal protein L4 [Staphylococcus aureus A9299]
gi|258442653|ref|ZP_05691213.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115]
gi|258446648|ref|ZP_05694803.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300]
gi|258450234|ref|ZP_05698326.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224]
gi|258450756|ref|ZP_05698815.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948]
gi|258455394|ref|ZP_05703354.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937]
gi|262048513|ref|ZP_06021397.1| 50S ribosomal protein L4 [Staphylococcus aureus D30]
gi|262052038|ref|ZP_06024249.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3]
gi|269203882|ref|YP_003283151.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98]
gi|282893687|ref|ZP_06301919.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117]
gi|282917594|ref|ZP_06325346.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
D139]
gi|282922118|ref|ZP_06329814.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765]
gi|283767341|ref|ZP_06340256.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19]
gi|284025275|ref|ZP_06379673.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus 132]
gi|294848782|ref|ZP_06789527.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754]
gi|295404925|ref|ZP_06814738.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819]
gi|296275960|ref|ZP_06858467.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MR1]
gi|297209938|ref|ZP_06926334.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297243983|ref|ZP_06927873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796]
gi|300910950|ref|ZP_07128400.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus TCH70]
gi|304379433|ref|ZP_07362168.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379015373|ref|YP_005291609.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VC40]
gi|379021913|ref|YP_005298575.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus M013]
gi|384548456|ref|YP_005737709.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ED133]
gi|384551035|ref|YP_005740287.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
JKD6159]
gi|384862893|ref|YP_005745613.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|384865431|ref|YP_005750790.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|384870797|ref|YP_005753511.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
T0131]
gi|385782484|ref|YP_005758655.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
11819-97]
gi|386729955|ref|YP_006196338.1| 50S ribosomal protein L4P [Staphylococcus aureus subsp. aureus
71193]
gi|386831821|ref|YP_006238475.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387143954|ref|YP_005732348.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TW20]
gi|387151372|ref|YP_005742936.1| 50S ribosomal protein L4 [Staphylococcus aureus 04-02981]
gi|387603533|ref|YP_005735054.1| ribosomal protein L4/L1 family [Staphylococcus aureus subsp. aureus
ST398]
gi|387781212|ref|YP_005756010.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
LGA251]
gi|404479543|ref|YP_006710973.1| 50S ribosomal protein L4 [Staphylococcus aureus 08BA02176]
gi|415686906|ref|ZP_11450910.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS01]
gi|415692898|ref|ZP_11454789.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS03]
gi|416840553|ref|ZP_11903800.1| 50S ribosomal protein L4 [Staphylococcus aureus O11]
gi|416846677|ref|ZP_11906666.1| 50S ribosomal protein L4 [Staphylococcus aureus O46]
gi|417647844|ref|ZP_12297675.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21189]
gi|417652982|ref|ZP_12302720.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21172]
gi|417654631|ref|ZP_12304347.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21193]
gi|417795965|ref|ZP_12443182.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21305]
gi|417800514|ref|ZP_12447633.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21310]
gi|417801798|ref|ZP_12448880.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21318]
gi|417890906|ref|ZP_12534974.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21200]
gi|417893283|ref|ZP_12537318.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21201]
gi|417898922|ref|ZP_12542834.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21259]
gi|417900871|ref|ZP_12544749.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21266]
gi|417903514|ref|ZP_12547358.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21269]
gi|418279676|ref|ZP_12892887.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21178]
gi|418283860|ref|ZP_12896597.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21202]
gi|418287064|ref|ZP_12899696.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21209]
gi|418306863|ref|ZP_12918622.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21194]
gi|418310944|ref|ZP_12922475.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21331]
gi|418314361|ref|ZP_12925839.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21334]
gi|418319179|ref|ZP_12930565.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21232]
gi|418320234|ref|ZP_12931597.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VCU006]
gi|418425413|ref|ZP_12998505.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS1]
gi|418428304|ref|ZP_13001291.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS2]
gi|418431189|ref|ZP_13004088.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418435096|ref|ZP_13006945.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS4]
gi|418437863|ref|ZP_13009638.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS5]
gi|418440795|ref|ZP_13012479.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS6]
gi|418443765|ref|ZP_13015350.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS7]
gi|418446764|ref|ZP_13018224.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS8]
gi|418449853|ref|ZP_13021222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS9]
gi|418452687|ref|ZP_13024008.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418455647|ref|ZP_13026895.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418458523|ref|ZP_13029711.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418560150|ref|ZP_13124672.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21252]
gi|418563535|ref|ZP_13127971.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21262]
gi|418568432|ref|ZP_13132778.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21272]
gi|418572018|ref|ZP_13136233.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21283]
gi|418573202|ref|ZP_13137402.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21333]
gi|418577450|ref|ZP_13141548.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599499|ref|ZP_13162982.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21343]
gi|418639956|ref|ZP_13202194.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus IS-3]
gi|418642224|ref|ZP_13204419.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-24]
gi|418645222|ref|ZP_13207349.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-55]
gi|418648043|ref|ZP_13210093.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-88]
gi|418650862|ref|ZP_13212879.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-91]
gi|418653538|ref|ZP_13215476.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-99]
gi|418657465|ref|ZP_13219232.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-105]
gi|418660091|ref|ZP_13221735.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-111]
gi|418663005|ref|ZP_13224533.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-122]
gi|418872397|ref|ZP_13426737.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-125]
gi|418876104|ref|ZP_13430352.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418876456|ref|ZP_13430698.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881937|ref|ZP_13436147.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418882211|ref|ZP_13436415.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418884860|ref|ZP_13439016.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418887485|ref|ZP_13441624.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418893028|ref|ZP_13447133.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418901816|ref|ZP_13455860.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418910079|ref|ZP_13464067.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG547]
gi|418912831|ref|ZP_13466805.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418918315|ref|ZP_13472264.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418923975|ref|ZP_13477881.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418926816|ref|ZP_13480706.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418929692|ref|ZP_13483544.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418932553|ref|ZP_13486379.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418946774|ref|ZP_13499183.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-157]
gi|418951668|ref|ZP_13503747.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955167|ref|ZP_13507115.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-189]
gi|418980700|ref|ZP_13528474.1| LSU ribosomal protein L1E (L4P) [Staphylococcus aureus subsp.
aureus DR10]
gi|418989280|ref|ZP_13536947.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|418989455|ref|ZP_13537119.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|418992240|ref|ZP_13539885.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG290]
gi|419774883|ref|ZP_14300836.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CO-23]
gi|419786249|ref|ZP_14311986.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus IS-M]
gi|421149847|ref|ZP_15609504.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|422743263|ref|ZP_16797255.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422746515|ref|ZP_16800447.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424774969|ref|ZP_18201970.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CM05]
gi|424786232|ref|ZP_18213023.1| LSU ribosomal protein L4p (L1e) [Staphylococcus aureus CN79]
gi|440706709|ref|ZP_20887433.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21282]
gi|440735607|ref|ZP_20915210.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus DSM
20231]
gi|443635894|ref|ZP_21120013.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21236]
gi|443640544|ref|ZP_21124532.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21196]
gi|448742581|ref|ZP_21724521.1| 50S ribosomal protein L4 [Staphylococcus aureus KT/314250]
gi|448745007|ref|ZP_21726882.1| 50S ribosomal protein L4 [Staphylococcus aureus KT/Y21]
gi|46577149|sp|P61058.1|RL4_STAAM RecName: Full=50S ribosomal protein L4
gi|46577150|sp|P61059.1|RL4_STAAN RecName: Full=50S ribosomal protein L4
gi|46577151|sp|P61060.1|RL4_STAAW RecName: Full=50S ribosomal protein L4
gi|56749373|sp|Q6G772.1|RL4_STAAS RecName: Full=50S ribosomal protein L4
gi|81693960|sp|Q5HDV9.1|RL4_STAAC RecName: Full=50S ribosomal protein L4
gi|109893640|sp|Q2FEP0.1|RL4_STAA3 RecName: Full=50S ribosomal protein L4
gi|109893641|sp|Q2YYP7.1|RL4_STAAB RecName: Full=50S ribosomal protein L4
gi|122538859|sp|Q2FW07.1|RL4_STAA8 RecName: Full=50S ribosomal protein L4
gi|166199911|sp|A7X5G2.1|RL4_STAA1 RecName: Full=50S ribosomal protein L4
gi|172049047|sp|A6QJ91.1|RL4_STAAE RecName: Full=50S ribosomal protein L4
gi|189042887|sp|A6U3X4.1|RL4_STAA2 RecName: Full=50S ribosomal protein L4
gi|189042888|sp|A5IV33.1|RL4_STAA9 RecName: Full=50S ribosomal protein L4
gi|13702049|dbj|BAB43341.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus N315]
gi|14248022|dbj|BAB58411.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu50]
gi|21205339|dbj|BAB96033.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus MW2]
gi|49245474|emb|CAG43951.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57285019|gb|AAW37113.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus COL]
gi|82657369|emb|CAI81810.1| 50S ribosomal protein L4 [Staphylococcus aureus RF122]
gi|87126129|gb|ABD20643.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203719|gb|ABD31529.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147741758|gb|ABQ50056.1| LSU ribosomal protein L4P [Staphylococcus aureus subsp. aureus JH9]
gi|149947206|gb|ABR53142.1| ribosomal protein L4/L1e [Staphylococcus aureus subsp. aureus JH1]
gi|150375163|dbj|BAF68423.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156722699|dbj|BAF79116.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus Mu3]
gi|253726362|gb|EES95091.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253727659|gb|EES96388.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
TCH130]
gi|257788567|gb|EEV26907.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9781]
gi|257840486|gb|EEV64946.1| 50S ribosomal protein L4 [Staphylococcus aureus A9763]
gi|257841833|gb|EEV66270.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9719]
gi|257847107|gb|EEV71116.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus A9635]
gi|257847567|gb|EEV71569.1| ribosomal protein L4 [Staphylococcus aureus A9299]
gi|257851774|gb|EEV75708.1| ribosomal protein L4/L1e [Staphylococcus aureus A8115]
gi|257854716|gb|EEV77664.1| 50S ribosomal protein L4 [Staphylococcus aureus A6300]
gi|257856326|gb|EEV79235.1| 50S ribosomal protein L4 [Staphylococcus aureus A6224]
gi|257861539|gb|EEV84341.1| ribosomal protein L4/L1e [Staphylococcus aureus A5948]
gi|257862605|gb|EEV85373.1| ribosomal protein L4/L1e [Staphylococcus aureus A5937]
gi|259160093|gb|EEW45126.1| 50S ribosomal protein L4 [Staphylococcus aureus 930918-3]
gi|259163371|gb|EEW47929.1| 50S ribosomal protein L4 [Staphylococcus aureus D30]
gi|262076172|gb|ACY12145.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus ED98]
gi|269941838|emb|CBI50248.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus TW20]
gi|282318556|gb|EFB48914.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
D139]
gi|282593586|gb|EFB98579.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9765]
gi|282763745|gb|EFC03873.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8117]
gi|283461220|gb|EFC08304.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus H19]
gi|283471471|emb|CAQ50682.1| ribosomal protein L4/L1 family [Staphylococcus aureus subsp. aureus
ST398]
gi|285817911|gb|ADC38398.1| 50S ribosomal protein L4 [Staphylococcus aureus 04-02981]
gi|294824161|gb|EFG40585.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A9754]
gi|294969870|gb|EFG45888.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8819]
gi|296885611|gb|EFH24548.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|297178761|gb|EFH38006.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A8796]
gi|298695505|gb|ADI98727.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ED133]
gi|300887930|gb|EFK83125.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus TCH70]
gi|302333885|gb|ADL24078.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302752122|gb|ADL66299.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304341965|gb|EFM07869.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312830598|emb|CBX35440.1| 50S ribosomal protein L4 (BL4) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129671|gb|EFT85662.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS03]
gi|315198221|gb|EFU28552.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140213|gb|EFW32072.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320143483|gb|EFW35264.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323440071|gb|EGA97786.1| 50S ribosomal protein L4 [Staphylococcus aureus O11]
gi|323442745|gb|EGB00371.1| 50S ribosomal protein L4 [Staphylococcus aureus O46]
gi|329314932|gb|AEB89345.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
T0131]
gi|329723693|gb|EGG60222.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21172]
gi|329730071|gb|EGG66461.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21193]
gi|329732021|gb|EGG68376.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21189]
gi|334270378|gb|EGL88783.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21305]
gi|334271060|gb|EGL89455.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21310]
gi|334276059|gb|EGL94327.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21318]
gi|341846640|gb|EGS87831.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21266]
gi|341846851|gb|EGS88039.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21259]
gi|341849928|gb|EGS91064.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21269]
gi|341853784|gb|EGS94664.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21200]
gi|341855479|gb|EGS96324.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21201]
gi|344178314|emb|CCC88800.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
LGA251]
gi|359831222|gb|AEV79200.1| LSU ribosomal protein L4p (L1e) [Staphylococcus aureus subsp.
aureus M013]
gi|364523473|gb|AEW66223.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
11819-97]
gi|365164488|gb|EHM56402.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21209]
gi|365165771|gb|EHM57520.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21202]
gi|365170329|gb|EHM61354.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21178]
gi|365227938|gb|EHM69125.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VCU006]
gi|365233987|gb|EHM74929.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21334]
gi|365235734|gb|EHM76645.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21331]
gi|365241432|gb|EHM82178.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21232]
gi|365246254|gb|EHM86824.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21194]
gi|371970773|gb|EHO88189.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21262]
gi|371972861|gb|EHO90230.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21252]
gi|371977717|gb|EHO94977.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21283]
gi|371979661|gb|EHO96887.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21272]
gi|371983289|gb|EHP00436.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21333]
gi|374364070|gb|AEZ38175.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VC40]
gi|374396815|gb|EHQ68040.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21343]
gi|375015574|gb|EHS09221.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus IS-3]
gi|375017272|gb|EHS10893.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-24]
gi|375018726|gb|EHS12296.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-99]
gi|375023576|gb|EHS17026.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-55]
gi|375027308|gb|EHS20672.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-88]
gi|375027518|gb|EHS20881.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-91]
gi|375030629|gb|EHS23939.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-105]
gi|375033194|gb|EHS26399.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-111]
gi|375034998|gb|EHS28137.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-122]
gi|375367239|gb|EHS71206.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-125]
gi|375371620|gb|EHS75390.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-189]
gi|375371956|gb|EHS75713.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-160]
gi|375377424|gb|EHS80892.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
IS-157]
gi|377698773|gb|EHT23120.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377699332|gb|EHT23678.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377700875|gb|EHT25208.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377715567|gb|EHT39756.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377718120|gb|EHT42292.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377718692|gb|EHT42863.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377725906|gb|EHT50018.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377727893|gb|EHT51995.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG547]
gi|377728802|gb|EHT52898.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377729561|gb|EHT53653.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377740526|gb|EHT64522.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377745169|gb|EHT69145.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377748242|gb|EHT72203.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377749557|gb|EHT73505.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG290]
gi|377756098|gb|EHT79995.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1524]
gi|377758874|gb|EHT82755.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377767832|gb|EHT91618.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377768601|gb|EHT92379.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377772727|gb|EHT96473.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC128]
gi|379991559|gb|EIA13030.1| LSU ribosomal protein L1E (L4P) [Staphylococcus aureus subsp.
aureus DR10]
gi|383360895|gb|EID38281.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus IS-M]
gi|383971282|gb|EID87361.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CO-23]
gi|384231248|gb|AFH70495.1| LSU ribosomal protein L1E (L4P) [Staphylococcus aureus subsp.
aureus 71193]
gi|385197213|emb|CCG16859.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus HO
5096 0412]
gi|387715937|gb|EIK04003.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS2]
gi|387716429|gb|EIK04487.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387716976|gb|EIK05013.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS1]
gi|387723639|gb|EIK11372.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS4]
gi|387725035|gb|EIK12665.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS5]
gi|387728127|gb|EIK15626.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS6]
gi|387733076|gb|EIK20273.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS8]
gi|387734069|gb|EIK21225.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS7]
gi|387734396|gb|EIK21549.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus VRS9]
gi|387741967|gb|EIK28791.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387742542|gb|EIK29355.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387743749|gb|EIK30534.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|394330022|gb|EJE56119.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|402347071|gb|EJU82138.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus CM05]
gi|404441032|gb|AFR74225.1| 50S ribosomal protein L4 [Staphylococcus aureus 08BA02176]
gi|408424161|emb|CCJ11572.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408426150|emb|CCJ13537.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408428138|emb|CCJ15501.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408430127|emb|CCJ27292.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408432114|emb|CCJ19429.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408434108|emb|CCJ21393.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408436101|emb|CCJ23361.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|408438084|emb|CCJ25327.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
ST228]
gi|421955501|gb|EKU07839.1| LSU ribosomal protein L4p (L1e) [Staphylococcus aureus CN79]
gi|436430487|gb|ELP27849.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436506860|gb|ELP42619.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21282]
gi|443405065|gb|ELS63677.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21196]
gi|443408710|gb|ELS67227.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21236]
gi|445546740|gb|ELY15026.1| 50S ribosomal protein L4 [Staphylococcus aureus KT/314250]
gi|445561623|gb|ELY17815.1| 50S ribosomal protein L4 [Staphylococcus aureus KT/Y21]
Length = 207
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 87/141 (61%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N + +E KKVL+
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVV 155
>gi|134298094|ref|YP_001111590.1| 50S ribosomal protein L4 [Desulfotomaculum reducens MI-1]
gi|172044220|sp|A4J112.1|RL4_DESRM RecName: Full=50S ribosomal protein L4
gi|134050794|gb|ABO48765.1| LSU ribosomal protein L4P [Desulfotomaculum reducens MI-1]
Length = 206
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 94/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E G + L +VF + + ++H V QLA ++QGTH TKT +EV G G+K
Sbjct: 4 VALYNINGEQVGEVELKDEVFGIEPHEHVMHEAVNMQLANQRQGTHDTKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +R G + GP PR +AI L KKVRRL LK ALS++ + +
Sbjct: 64 PWRQKGTGRARAGSSRSPIWRKGGIVFGPHPRDYAISLPKKVRRLALKSALSSKVLDQNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + + KTK +V ++ K +++
Sbjct: 124 IVLDSLTMDAPKTKDMVRILGNLKADKALVVT 155
>gi|313891529|ref|ZP_07825139.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E]
gi|313119988|gb|EFR43170.1| 50S ribosomal protein L4 [Dialister microaerophilus UPII 345-E]
Length = 207
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 97/170 (57%), Gaps = 1/170 (0%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
N + G + L +F V + +IH+ V Q A + GTH+TKT V G GKKPWRQ
Sbjct: 8 NIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGGGKKPWRQ 67
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
KGTGRAR G++R P + GG T+ GP PRSHA + KK RRL +K ALS + +L+V +
Sbjct: 68 KGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRANELIVID 127
Query: 225 DLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+ + KTK +V E + K L+ DGG E L+ +N+ V +
Sbjct: 128 QINFEAPKTKQVVEMMKAFEAS-KALIIDGGKAVENTVLSARNIPGVKAI 176
>gi|428162639|gb|EKX31763.1| hypothetical protein GUITHDRAFT_166830 [Guillardia theta CCMP2712]
Length = 340
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 92/165 (55%), Gaps = 1/165 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G LA VF P+R DI++RVV WQ A + K + VSG GKKPW QK TGRAR
Sbjct: 93 GTCQLASAVFQEPLRVDILNRVVLWQRAGWRTIARIAKNRNMVSGGGKKPWAQKKTGRAR 152
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R P FR G HGP RS AI + KKVRRLG+++A+S+R EGK+ + E ++ S
Sbjct: 153 QGSIRAPHFRHGGKAHGPVQRSFAIDMPKKVRRLGVRVAMSSRMREGKVWIVESEKLSSS 212
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
KT+ Q L G + LAT NL + +P+
Sbjct: 213 KTRHAAAVARQW-GWDSCLFITGSSPDKNFDLATGNLPNLRAIPA 256
>gi|331091666|ref|ZP_08340500.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA]
gi|330403423|gb|EGG82982.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 2_1_46FAA]
Length = 206
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 91/153 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGNEVGTIDLNDAVFGVEVNEHLLHMAVVNQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVLENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD 253
+V +++ KTK N N + +K +++ +
Sbjct: 124 IVLDEINFGEIKTKNFQNVLNNLNVSKALVVLE 156
>gi|254294439|ref|YP_003060462.1| 50S ribosomal protein L4 [Hirschia baltica ATCC 49814]
gi|254042970|gb|ACT59765.1| ribosomal protein L4/L1e [Hirschia baltica ATCC 49814]
Length = 309
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 101/178 (56%), Gaps = 2/178 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ + V N + G + L VF + +R DI+ R+VR+QLAKRQ GTH T+T SEV+ T
Sbjct: 1 MKLDVINLDAKKAGSVELNDAVFGIEDVRPDILQRMVRYQLAKRQAGTHKTQTRSEVNKT 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
+ RQKG G ARHG+ P F GG HGPK RSHA L KK R L LK ALSA+ +
Sbjct: 61 KTRFGRQKGGGGARHGSRNAPIFVGGGVAHGPKVRSHAHDLTKKFRALALKHALSAKVKD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ V KTK + + + K L+ G + + A +N+ ++VLP
Sbjct: 121 SSLIVLEEAAVSEVKTKALRAQFEAL-GLKNALVIGGESLDDNFAKAARNIPNIDVLP 177
>gi|424835392|ref|ZP_18260057.1| 50S ribosomal protein L4 [Clostridium sporogenes PA 3679]
gi|365978185|gb|EHN14280.1| 50S ribosomal protein L4 [Clostridium sporogenes PA 3679]
Length = 206
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V +D+++ + KTK +V N + K +++ + E + + +N+ V ++P
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFDAKKTLIITNNA--EENVYKSARNIEGVQIIP 176
>gi|160881784|ref|YP_001560752.1| 50S ribosomal protein L4 [Clostridium phytofermentans ISDg]
gi|189029497|sp|A9KJJ3.1|RL4_CLOPH RecName: Full=50S ribosomal protein L4
gi|160430450|gb|ABX44013.1| ribosomal protein L4/L1e [Clostridium phytofermentans ISDg]
Length = 206
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 112/195 (57%), Gaps = 9/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L +F V + + ++H V QLA ++QGT S KT +EVSG G+K
Sbjct: 4 VKVYNIEGKEVGSLELNDAIFGVEVNEHLMHMAVVSQLANKRQGTQSAKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + PKPR ++ K+N+K + L +K AL++R KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPKPRDYSFKMNRKEKSLAIKSALTSRVEAQKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V + + + KTK ++ K +++ D E + L+ +N +P+ VR+
Sbjct: 124 IVLDSMNMDEIKTKKFKAVLENLKVNKALVVLDKK--DENVILSARN------IPT-VRT 174
Query: 281 TTQSFLIYYYFLDFD 295
T + + Y + +D
Sbjct: 175 ATSNAINVYDIVKYD 189
>gi|397476516|ref|XP_003809645.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Pan paniscus]
Length = 311
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 116/231 (50%), Gaps = 8/231 (3%)
Query: 52 SGLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDK 111
GLS LA T + P +L K + P + Q V + F E
Sbjct: 19 QGLSSLAEEAARATENPEQVASEGLPEPVLRKVELPVPTHRRPV-QAWVESLRGFEQERV 77
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTGRAR
Sbjct: 78 GLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L + + LE+P+
Sbjct: 138 HGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRVLGLKVALTVKLAQDDLHIMDSLELPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSV 277
+++ + VLL D HE++ AT L N++P+V
Sbjct: 198 GDPQYLTELAHYRRWGDSVLLVD--LTHEEMPQSIVEATSRLKTFNLIPAV 246
>gi|365926342|ref|ZP_09449105.1| 50S ribosomal protein L4 [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|420265979|ref|ZP_14768491.1| 50S ribosomal protein L4 [Lactobacillus mali KCTC 3596 = DSM 20444]
gi|394426842|gb|EJE99634.1| 50S ribosomal protein L4 [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 207
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 103/181 (56%), Gaps = 8/181 (4%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + +++ V Q A +QGTH+ K S+VSG
Sbjct: 1 MPKVTLFKQDGSKNGEVELNENIFGIEPNDNVVFDAVIMQRASLRQGTHAVKNRSDVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ KL KKVRRL +K LS +
Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPKKVRRLAIKSVLSQKVLN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLP 275
LL+ + L KTK N ++ KVL L DG ++ L+ +NL V V+
Sbjct: 121 ESLLIVDKLSFDQPKTKAFAEVLNSLDVKTKVLVVLEDG---NDLAALSARNLPNVTVVS 177
Query: 276 S 276
+
Sbjct: 178 A 178
>gi|329121829|ref|ZP_08250444.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965]
gi|327467767|gb|EGF13259.1| 50S ribosomal protein L4 [Dialister micraerophilus DSM 19965]
Length = 207
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/170 (41%), Positives = 97/170 (57%), Gaps = 1/170 (0%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
N + G + L +F V + +IH+ V Q A + GTH+TKT V G GKKPWRQ
Sbjct: 8 NIAGQAAGEVELNDSIFGVEYNEAVIHQAVVRQQANERLGTHATKTRGLVRGGGKKPWRQ 67
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
KGTGRAR G++R P + GG T+ GP PRSHA + KK RRL +K ALS + +L+V +
Sbjct: 68 KGTGRARVGSIRSPLWVGGGTVFGPTPRSHAKGMTKKARRLAVKSALSEKLRANELIVID 127
Query: 225 DLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+ + KTK +V E + K L+ DGG E L+ +N+ V +
Sbjct: 128 QINFEAPKTKQVVEMMKAFEAS-KALIIDGGKAVENTVLSARNIPGVKAI 176
>gi|238916266|ref|YP_002929783.1| 50S ribosomal protein L4 [Eubacterium eligens ATCC 27750]
gi|259491557|sp|C4Z2T1.1|RL4_EUBE2 RecName: Full=50S ribosomal protein L4
gi|238871626|gb|ACR71336.1| large subunit ribosomal protein L4 [Eubacterium eligens ATCC 27750]
Length = 206
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 94/154 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA +QGT S KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGSIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQSAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + PKPR ++ K+NKK +R+ L ALS++ A+ K+
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPKPRDYSFKMNKKEKRIALLSALSSKVADNKI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDG 254
+V + + KTK + ++ K +++ +G
Sbjct: 124 VVLDAFNLDEIKTKKFAEVMSNLKVDKALVVIEG 157
>gi|291542036|emb|CBL15146.1| LSU ribosomal protein L4P [Ruminococcus bromii L2-63]
Length = 207
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 93/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + LA VF + ++H++V LA ++QGT S T SEVSG GKK
Sbjct: 4 LAVVDMEGKNVGTIELAESVFGIEPNAAVMHQMVVNYLAAQRQGTQSALTRSEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R PQ+ G + PKPR + +NKKVRRL +K A S++ E +L
Sbjct: 64 PWRQKGTGRARQGSTRAPQWTHGGVVFAPKPRDYRFSVNKKVRRLAMKSAFSSKVMENEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + + + +KTK IV + + KK L+
Sbjct: 124 IVVDSISMDEYKTKKIVAMLSAIGAEKKALIV 155
>gi|62857671|ref|NP_001017222.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis]
gi|89268693|emb|CAJ82705.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis]
Length = 298
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 126/232 (54%), Gaps = 25/232 (10%)
Query: 71 SSEGAFPSDLLL--------KKTVLTP-DITIGLHQDLVIPVTNFF-------------- 107
SSE A PS+L+L KT P D++ + + +PV +
Sbjct: 19 SSESALPSNLILPPGLKDGPSKTQRPPVDVSQPVIRPCRVPVPSHLSPKPVWLESLRHPD 78
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
++ G + L DVF VP R DI+H+VV WQ ++ KT +EV G GKKP +QKG+
Sbjct: 79 DQPLGLVHLHPDVFTVPPRIDILHQVVTWQRNFKRISHAKVKTRAEVRGGGKKPRQQKGS 138
Query: 168 GRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
GRAR G++R P +RGG HGP+ P S+ + K+R GLKIAL+A+ A+ L V + L
Sbjct: 139 GRARQGSIRSPLWRGGGVAHGPRGPTSYYYMMPMKMRVQGLKIALTAKLAQDDLHVIDSL 198
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSV 277
E+ + +++V+ + + VL+ D + E L AT NL +NV+P++
Sbjct: 199 EISTPDPQYLVDLIKHRQWGESVLIVDVNENLPENLFNATVNLKKINVIPAI 250
>gi|373116805|ref|ZP_09530956.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 7_1_58FAA]
gi|371668881|gb|EHO33985.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 7_1_58FAA]
Length = 206
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 106/184 (57%), Gaps = 8/184 (4%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
N G + L+ VF + + ++H VV+ LA +QGT S T +EVSG G KPWRQ
Sbjct: 8 NMAGTQVGEVELSEAVFGIEPNQTVVHEVVKNHLANCRQGTQSALTRAEVSGGGIKPWRQ 67
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
KGTGRAR G+ R PQ+ G + PKPR ++ LNKKV+RL LK ALSA+AA G ++V +
Sbjct: 68 KGTGRARQGSTRAPQWTHGGIVFAPKPRDYSYVLNKKVKRLALKSALSAKAASGDIVVVD 127
Query: 225 DLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQS 284
L + KTK + + + + K V++ ++E + + +N +P VV +T +
Sbjct: 128 SLNLDEVKTKAMKGFLDTVGAKKAVVVTPE--VNETVIKSARN------IPGVVTTTAKI 179
Query: 285 FLIY 288
+Y
Sbjct: 180 LSVY 183
>gi|308272978|emb|CBX29582.1| 50S ribosomal protein L4 [uncultured Desulfobacterium sp.]
Length = 207
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 109/175 (62%), Gaps = 2/175 (1%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
+I V N E + L +F++P++ ++H VV QLA R+ G+ S K S+V G+ +
Sbjct: 3 LIDVYNLNGEKVSQLELTDSIFNIPVKPSVLHEVVTMQLACRRAGSASVKHRSDVRGSTR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
K +RQKGTGRAR G ++ P RGG ++ GP PRS++ K+ KK+++L LK+ALS++
Sbjct: 63 KLFRQKGTGRARRGDIKSPLLRGGGSIFGPDPRSYSYKVPKKIKKLALKMALSSKTINNN 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L+V + E+ KTK + N ++ K +++ + ++E L+L+++N+ + V+
Sbjct: 123 LIVIDKFELEEAKTKNFIAVINTLKIKKALIITEK--LNESLELSSRNVPDIKVM 175
>gi|383761364|ref|YP_005440346.1| 50S ribosomal protein L4 [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381381632|dbj|BAL98448.1| 50S ribosomal protein L4 [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 211
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/142 (45%), Positives = 91/142 (64%), Gaps = 1/142 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF PI ++H+ + QLA + GTH TKT SEVSG G+KPWRQKGTGRAR
Sbjct: 7 GEVELSDAVFAAPIHTAVMHQALMRQLANARLGTHDTKTRSEVSGGGRKPWRQKGTGRAR 66
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG + GP PR + L KK++R+ L+ ALS +AAEG+++V + + +
Sbjct: 67 QGSIRAPQWVGGGIVFGPTPRKYTKALPKKMQRMALRSALSVKAAEGQIVVIDRVAIDEP 126
Query: 232 KTKFIVNYYNQME-NTKKVLLC 252
KTK + + +KVLL
Sbjct: 127 KTKIAAQMLSALGIADQKVLLV 148
>gi|379737641|ref|YP_005331147.1| 50S ribosomal protein L4 [Blastococcus saxobsidens DD2]
gi|378785448|emb|CCG05121.1| 50S ribosomal protein L4 [Blastococcus saxobsidens DD2]
Length = 258
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 5/158 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D + V E G + L G++FD ++H+VV QLA +QGTH+TKT ++V G
Sbjct: 10 DRQVDVRTPAGETSGSVTLPGELFDANANVSLMHQVVVAQLAAARQGTHATKTRAQVRGG 69
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KP+RQKGTGRAR G++R PQF GG +HGP+PR + + KK++ L+ ALS RA E
Sbjct: 70 GVKPYRQKGTGRARQGSIRAPQFSGGGIVHGPQPRDYTQRTPKKMKAAALRGALSDRARE 129
Query: 218 GKLLV---FEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
G++ V F D + P KTK + N + K+VL+
Sbjct: 130 GRVHVVSAFVDGDAP--KTKAALATLNAVTQAKRVLIV 165
>gi|365845085|ref|ZP_09385883.1| 50S ribosomal protein L4 [Flavonifractor plautii ATCC 29863]
gi|364562009|gb|EHM39881.1| 50S ribosomal protein L4 [Flavonifractor plautii ATCC 29863]
Length = 206
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 106/184 (57%), Gaps = 8/184 (4%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
N G + L+ VF + + ++H VV+ LA +QGT S T +EVSG G KPWRQ
Sbjct: 8 NMAGTQVGEVELSEAVFGIEPNQTVVHEVVKNHLANCRQGTQSALTRAEVSGGGIKPWRQ 67
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
KGTGRAR G+ R PQ+ G + PKPR ++ LNKKV+RL LK ALSA+AA G ++V +
Sbjct: 68 KGTGRARQGSTRAPQWTHGGIVFAPKPRDYSYVLNKKVKRLALKSALSAKAASGDIVVVD 127
Query: 225 DLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQS 284
L + KTK + + + + K V++ ++E + + +N +P VV +T +
Sbjct: 128 SLNLDEVKTKAMKGFLDTVGAKKAVVVTPE--VNETVIKSARN------IPGVVTTTAKI 179
Query: 285 FLIY 288
+Y
Sbjct: 180 LSVY 183
>gi|157816923|ref|NP_001102224.1| 39S ribosomal protein L4, mitochondrial [Rattus norvegicus]
gi|149020531|gb|EDL78336.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 294
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 103/186 (55%), Gaps = 7/186 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + F E G L DVF R DI+H+V WQ ++ TKT +EVSG
Sbjct: 63 QAWVESLRGFEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAEVSG 122
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW+QKG+GRARHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ +
Sbjct: 123 GGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKL 182
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYV 271
+ L + + LE+P+ +++ VLL D HE++ AT L+
Sbjct: 183 MQDDLHIVDSLELPTADPQYLTELAQYRHWGSSVLLVD--LTHEEMPKNVMAATSRLNSF 240
Query: 272 NVLPSV 277
N++P+V
Sbjct: 241 NLIPAV 246
>gi|257067059|ref|YP_003153315.1| 50S ribosomal protein L4 [Anaerococcus prevotii DSM 20548]
gi|256798939|gb|ACV29594.1| ribosomal protein L4/L1e [Anaerococcus prevotii DSM 20548]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 96/152 (63%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N E+ G + L +F+ I + ++ VV+ QLA ++QGT S KT SEV G G+K
Sbjct: 4 VDILNIKGENVGSLELNETLFNTEISEHSVYEVVKNQLANKRQGTQSAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R P + GG + PKPR ++ K+ KK+RR L L+++ +G+L
Sbjct: 64 PFRQKGTGRARQGSIRAPHYTGGGVVFAPKPRDYSYKVPKKLRRKALYSVLTSKVVDGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V +DL++ ++KTK N +E KK +
Sbjct: 124 IVLDDLKLENNKTKEAAAVLNAVEAGKKAYVV 155
>gi|148381420|ref|YP_001255961.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502]
gi|153933556|ref|YP_001385795.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397]
gi|153934780|ref|YP_001389202.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall]
gi|153940969|ref|YP_001392833.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland]
gi|168178833|ref|ZP_02613497.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916]
gi|226950932|ref|YP_002806023.1| 50S ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto]
gi|384463796|ref|YP_005676391.1| 50S ribosomal protein L4 [Clostridium botulinum F str. 230613]
gi|387819761|ref|YP_005680108.1| 50S ribosomal protein L4 [Clostridium botulinum H04402 065]
gi|421834862|ref|ZP_16269789.1| 50S ribosomal protein L4 [Clostridium botulinum CFSAN001627]
gi|166234655|sp|A7FZ68.1|RL4_CLOB1 RecName: Full=50S ribosomal protein L4
gi|166234656|sp|A5I7K5.1|RL4_CLOBH RecName: Full=50S ribosomal protein L4
gi|166234657|sp|A7GJ73.1|RL4_CLOBL RecName: Full=50S ribosomal protein L4
gi|254803725|sp|C1FMV0.1|RL4_CLOBJ RecName: Full=50S ribosomal protein L4
gi|148290904|emb|CAL85040.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 3502]
gi|152929600|gb|ABS35100.1| 50S ribosomal protein L4 [Clostridium botulinum A str. ATCC 19397]
gi|152930694|gb|ABS36193.1| 50S ribosomal protein L4 [Clostridium botulinum A str. Hall]
gi|152936865|gb|ABS42363.1| 50S ribosomal protein L4 [Clostridium botulinum F str. Langeland]
gi|182670131|gb|EDT82107.1| ribosomal protein L4 [Clostridium botulinum NCTC 2916]
gi|226844588|gb|ACO87254.1| ribosomal protein L4 [Clostridium botulinum A2 str. Kyoto]
gi|295320813|gb|ADG01191.1| 50S ribosomal protein L4 [Clostridium botulinum F str. 230613]
gi|322807805|emb|CBZ05380.1| LSU ribosomal protein L4p (L1e) [Clostridium botulinum H04402 065]
gi|409743654|gb|EKN42547.1| 50S ribosomal protein L4 [Clostridium botulinum CFSAN001627]
Length = 206
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 107/178 (60%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGVVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V +++++ + KTK +V N N KK L+ E + + +N+ V ++P
Sbjct: 121 NLMVVVDEIKLETPKTKEVVKMLNSF-NAKKTLIITNNA-EENVYKSARNIEGVQIIP 176
>gi|326803034|ref|YP_004320852.1| 50S ribosomal protein L4 [Aerococcus urinae ACS-120-V-Col10a]
gi|326650179|gb|AEA00362.1| 50S ribosomal protein L4 [Aerococcus urinae ACS-120-V-Col10a]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 102/176 (57%), Gaps = 10/176 (5%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
N + +D G + + D+F + + I V+ Q A R+QGTH+ K S VSG G+KP
Sbjct: 5 NLYKQDGSQNGEIEVKDDIFAIEPNETAIFDVILMQRASRRQGTHAVKNRSAVSGGGRKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G++R PQ+ GG GP PRS++ KL +KVRRL L+ ALS + ++ L+
Sbjct: 65 WRQKGTGRARQGSIRAPQWVGGGRAFGPTPRSYSYKLPRKVRRLALRSALSRKVSQDNLV 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLC---DGGCIHEKLKLATQNLHYVNVL 274
V + L + + KTK N + +KVL+ D H L+ +NL V V+
Sbjct: 125 VVDALSLDAPKTKEFKNILENLNVNEKVLVVVDKDNTNAH----LSARNLSNVTVV 176
>gi|320352918|ref|YP_004194257.1| 50S ribosomal protein L4P [Desulfobulbus propionicus DSM 2032]
gi|320121420|gb|ADW16966.1| LSU ribosomal protein L4P [Desulfobulbus propionicus DSM 2032]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 101/175 (57%), Gaps = 6/175 (3%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N E G + L +F++ + I+H VV Q A R+ G TKT EVSG G KPW
Sbjct: 6 IYNTRAEKVGEIDLNESLFNLEVNTGILHEVVCMQRANRRSGNACTKTRGEVSGGGAKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G+ P +RGG T+ GPKPR ++ + KKV+RL LK+A+SAR EG +++
Sbjct: 66 RQKGTGRARSGSRTSPVWRGGGTVFGPKPRDYSYSMPKKVKRLALKMAMSARCQEGNIVI 125
Query: 223 FEDLEVPSHKTK-FIVNYYN-QMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+ ++P+ KTK F+ N Q EN V + L L+ +N VLP
Sbjct: 126 VDQFDLPAVKTKEFLKVMTNFQFENCLVVTAES----EDNLGLSARNAVGFKVLP 176
>gi|296130494|ref|YP_003637744.1| 50S ribosomal protein L4 [Cellulomonas flavigena DSM 20109]
gi|296022309|gb|ADG75545.1| ribosomal protein L4/L1e [Cellulomonas flavigena DSM 20109]
Length = 228
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V + + G L GDVFDV +IH+VV QLA +QGTH TKT EV G G
Sbjct: 5 LTVDVLDEKGKKAGTADLPGDVFDVTTNVPLIHQVVVAQLAAVRQGTHDTKTRGEVRGGG 64
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP++QKGTGRAR G+ R PQF GG T+HGP PR ++ + KK++ L+ ALS RA G
Sbjct: 65 KKPYKQKGTGRARQGSTRAPQFAGGGTVHGPTPRDYSQRTPKKMKAAALRGALSDRARAG 124
Query: 219 KLLV---FEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
++ V F EVPS K V + + K VL+
Sbjct: 125 RVHVVTGFAPGEVPSTKAALAV--LDNLSGRKNVLVV 159
>gi|372324928|ref|ZP_09519517.1| LSU ribosomal protein L4p (L1e) [Oenococcus kitaharae DSM 17330]
gi|366983736|gb|EHN59135.1| LSU ribosomal protein L4p (L1e) [Oenococcus kitaharae DSM 17330]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 101/186 (54%), Gaps = 10/186 (5%)
Query: 106 FFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
F +D G + L VF + + ++ V Q A +QGTHS K S VSG G+KPW
Sbjct: 6 LFKQDGAKAGEVELNDAVFAIVPNEAVVTDAVLMQRASMRQGTHSVKNRSAVSGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G++R PQ+RGG GP PRS++ K+N+K RL LK ALS + A+ +V
Sbjct: 66 RQKGTGNARQGSIRAPQWRGGGISMGPTPRSYSYKINRKAYRLALKSALSDKVAQQNFIV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTT 282
+ + TK +++ +TKK LL E +KL+ +NL V V+ T
Sbjct: 126 VDKFDFDKPSTKLFAENLSKLNSTKKTLLVIDAA-DENVKLSARNLPNVQVV------TA 178
Query: 283 QSFLIY 288
Q +Y
Sbjct: 179 QGVNVY 184
>gi|358065650|ref|ZP_09152186.1| 50S ribosomal protein L4 [Clostridium hathewayi WAL-18680]
gi|356696136|gb|EHI57759.1| 50S ribosomal protein L4 [Clostridium hathewayi WAL-18680]
Length = 206
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 104/179 (58%), Gaps = 7/179 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V I + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTLELNDAVFGVEINEHLVHLSVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTG AR G+ R PQ+ GG + P PR + I+LNKK +R LK AL++R + K
Sbjct: 64 PWKQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVNDNKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLH-----YVNVL 274
+V ++++ KTK N + ++ +K +++ + G L+ +N+ YVN +
Sbjct: 124 IVVDEMKFDEIKTKKFQNVMDSLKVSKALVVLEDGS--NNAVLSARNIQDVKTAYVNTI 180
>gi|357054995|ref|ZP_09116073.1| 50S ribosomal protein L4 [Clostridium clostridioforme 2_1_49FAA]
gi|355383695|gb|EHG30772.1| 50S ribosomal protein L4 [Clostridium clostridioforme 2_1_49FAA]
Length = 206
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I+LNKK +R L+ AL++R + K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGIVFAPTPRDYTIRLNKKEKRAALRSALTSRVQDNKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCD 253
+V ++L+ KT+ N + ++ +K V+L D
Sbjct: 124 IVVDELKFDEIKTRKFQNVMDNLKVSKALVVLAD 157
>gi|222150446|ref|YP_002559599.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402]
gi|254803742|sp|B9E9J2.1|RL4_MACCJ RecName: Full=50S ribosomal protein L4
gi|222119568|dbj|BAH16903.1| 50S ribosomal protein L4 [Macrococcus caseolyticus JCSC5402]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 86/141 (60%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +VF + + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELNDNVFGIEPNQHVLFEAINLQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALSA+ E V E L +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSAKVQENAFTVLESLTFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N +E KKVL
Sbjct: 135 KTKEFKNMTTTLELPKKVLFV 155
>gi|256390141|ref|YP_003111705.1| 50S ribosomal protein L4 [Catenulispora acidiphila DSM 44928]
gi|256356367|gb|ACU69864.1| ribosomal protein L4/L1e [Catenulispora acidiphila DSM 44928]
Length = 217
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/138 (48%), Positives = 88/138 (63%), Gaps = 1/138 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L G++FDV +IH+VV QLA +QGTH TKT EVSG GKKP+RQKGTGRAR G+
Sbjct: 9 LPGEIFDVQTNIPLIHQVVVAQLAAARQGTHKTKTRGEVSGGGKKPYRQKGTGRARQGST 68
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL-EVPSHKTK 234
R PQF GG +HGP PR +A + KK++ L+ ALS RA +G+++V + L E + TK
Sbjct: 69 RAPQFAGGGVVHGPVPRDYAQRTPKKMKAAALRGALSDRARDGRVIVVDALVEGATPNTK 128
Query: 235 FIVNYYNQMENTKKVLLC 252
V + K VL+
Sbjct: 129 SAVALLKGVTEHKNVLVV 146
>gi|187776577|ref|ZP_02993050.1| hypothetical protein CLOSPO_00091 [Clostridium sporogenes ATCC
15579]
gi|187775236|gb|EDU39038.1| 50S ribosomal protein L4 [Clostridium sporogenes ATCC 15579]
Length = 206
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG
Sbjct: 1 MPKVDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V +D+++ + KTK +V N + K +++ + E + + +N+ V ++P
Sbjct: 121 KLMVVVDDIKLETPKTKEVVKMLNAFDAKKTLIITNNS--EENVYKSARNIEGVQIIP 176
>gi|306825985|ref|ZP_07459321.1| ribosomal protein L4/L1 family protein [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|401683834|ref|ZP_10815719.1| 50S ribosomal protein L4 [Streptococcus sp. BS35b]
gi|417794827|ref|ZP_12442063.1| 50S ribosomal protein L4 [Streptococcus oralis SK255]
gi|417940345|ref|ZP_12583633.1| 50S ribosomal protein L4 [Streptococcus oralis SK313]
gi|418975514|ref|ZP_13523418.1| 50S ribosomal protein L4 [Streptococcus oralis SK1074]
gi|304431701|gb|EFM34681.1| ribosomal protein L4/L1 family protein [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|334267140|gb|EGL85608.1| 50S ribosomal protein L4 [Streptococcus oralis SK255]
gi|343389226|gb|EGV01811.1| 50S ribosomal protein L4 [Streptococcus oralis SK313]
gi|383347497|gb|EID25475.1| 50S ribosomal protein L4 [Streptococcus oralis SK1074]
gi|400186874|gb|EJO21079.1| 50S ribosomal protein L4 [Streptococcus sp. BS35b]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|291562767|emb|CBL41583.1| LSU ribosomal protein L4P [butyrate-producing bacterium SS3/4]
Length = 206
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 92/154 (59%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTIELNDAVFGVEVNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR + I LNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGMVFAPTPRDYTITLNKKEKRAALKSALTSRVNENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKK-VLLCD 253
+V ++L+ KTK N ++ +K V+L D
Sbjct: 124 VVVDELKFDEVKTKNFKAVMNNLKVSKALVVLAD 157
>gi|270291132|ref|ZP_06197355.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4]
gi|304385413|ref|ZP_07367758.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici
DSM 20284]
gi|418069690|ref|ZP_12706967.1| 50S ribosomal protein L4P [Pediococcus acidilactici MA18/5M]
gi|427442937|ref|ZP_18925765.1| 50S ribosomal protein L4/L1 [Pediococcus lolii NGRI 0510Q]
gi|270280528|gb|EFA26363.1| 50S ribosomal protein L4/L1 [Pediococcus acidilactici 7_4]
gi|304328620|gb|EFL95841.1| ribosomal protein L4/L1 family protein [Pediococcus acidilactici
DSM 20284]
gi|357536221|gb|EHJ20252.1| 50S ribosomal protein L4P [Pediococcus acidilactici MA18/5M]
gi|425786585|dbj|GAC46553.1| 50S ribosomal protein L4/L1 [Pediococcus lolii NGRI 0510Q]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 4/173 (2%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L D+F + D++ V Q A +QGTH+ K S V G GKKP
Sbjct: 5 SLFKQDGTQNGTVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G++R PQ+RGG + GP PRS+A + KK+RRL LK LS + + L+
Sbjct: 65 WRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESLV 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
V ++ + + KTK +++ KK LL +E LA +NL V ++
Sbjct: 125 VVDEFKFETPKTKDFAQSLSKLNVEKKALLVLEED-NESAVLAARNLSNVKIV 176
>gi|406837803|ref|ZP_11097397.1| 50S ribosomal protein L4 [Lactobacillus vini DSM 20605]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 104/179 (58%), Gaps = 8/179 (4%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +D G + L+ ++F + + ++ V Q A +QGTH+ K S VSG
Sbjct: 1 MPTVALYKQDGSKNGEVSLSKEIFGIKPNESVVFDAVLMQRASLRQGTHAVKNRSAVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ KL +KVRRL +K LS + A+
Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVL 274
L+V + L + KTK ++ KVL L DG ++ L+ +NL V V+
Sbjct: 121 QDLMVVDKLTFEAPKTKDFAKVLASLDVQSKVLVVLEDG---NDLAALSARNLANVTVI 176
>gi|294496986|ref|YP_003560686.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551]
gi|294346923|gb|ADE67252.1| 50S ribosomal protein L4 [Bacillus megaterium QM B1551]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN E+ G + L VF + ++ + Q A ++QGT K SEV G
Sbjct: 1 MPKVALFNQNGENVGEIELQDAVFGIEPNNKVLFDAIVMQRASQRQGTSKVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALS + +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPVPRSYSYKLPKKVRRLAIKSALSTKVQD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++V E L + KTK +V + +K L+ ++E + L+ +N+ V V+ +
Sbjct: 121 NSIVVLEALSFDAPKTKEMVAVLKNLTVERKALVVTAD-LNENVALSARNIPGVTVVAA 178
>gi|291544461|emb|CBL17570.1| LSU ribosomal protein L4P [Ruminococcus champanellensis 18P13]
Length = 207
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 102/180 (56%), Gaps = 8/180 (4%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ VF + + ++H +V LA ++QGT ST T +EVSG G+KPWRQKGTG AR G++
Sbjct: 19 LSDAVFGITPNEAVMHAMVVNYLANQRQGTQSTLTRTEVSGGGRKPWRQKGTGHARQGSI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+ G GPKPR + LNKKVRRL +K ALS++ E ++V + L V S+KTK
Sbjct: 79 RAPQWYHGGVALGPKPRDYRYALNKKVRRLAMKSALSSKVLENNIIVLDALTVDSYKTKT 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFD 295
IV + K L+ + +K A +P V++ + L Y L++D
Sbjct: 139 IVAMLKALNVEGKALIVTAEADKKVIKSAAN-------IPG-VKTAAVNTLNVYDILNYD 190
>gi|284992873|ref|YP_003411427.1| 50S ribosomal protein L4/L1e [Geodermatophilus obscurus DSM 43160]
gi|284066118|gb|ADB77056.1| ribosomal protein L4/L1e [Geodermatophilus obscurus DSM 43160]
Length = 292
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 5/158 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D + V E G + L G++FD ++H+VV QLA +QGTH+TKT +VSG
Sbjct: 15 DRQVDVRTPAGETSGSVTLPGELFDASANVSLMHQVVVAQLAAARQGTHATKTRGQVSGG 74
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KP+RQKGTGRAR G++R PQF GG T+HGP+PR ++ K KK++ L+ ALS RA E
Sbjct: 75 GIKPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYSQKTPKKMKAAALRGALSDRARE 134
Query: 218 GKLLV---FEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
++ V F D + P +TK + + K+VL+
Sbjct: 135 NRVHVVSTFVDGDAP--RTKAALATLESITRAKRVLVV 170
>gi|108797987|ref|YP_638184.1| 50S ribosomal protein L4 [Mycobacterium sp. MCS]
gi|119867083|ref|YP_937035.1| 50S ribosomal protein L4 [Mycobacterium sp. KMS]
gi|126433649|ref|YP_001069340.1| 50S ribosomal protein L4 [Mycobacterium sp. JLS]
gi|122977349|sp|Q1BDA6.1|RL4_MYCSS RecName: Full=50S ribosomal protein L4
gi|166234689|sp|A3PVC2.1|RL4_MYCSJ RecName: Full=50S ribosomal protein L4
gi|166234690|sp|A1UBN7.1|RL4_MYCSK RecName: Full=50S ribosomal protein L4
gi|108768406|gb|ABG07128.1| LSU ribosomal protein L4P [Mycobacterium sp. MCS]
gi|119693172|gb|ABL90245.1| LSU ribosomal protein L4P [Mycobacterium sp. KMS]
gi|126233449|gb|ABN96849.1| LSU ribosomal protein L4P [Mycobacterium sp. JLS]
Length = 219
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKGTGRAR
Sbjct: 16 GSVELPAELFDVEANIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG T+HGP+PR ++ + KK+ L+ ALS RA G++ V E +E +
Sbjct: 76 QGSTRAPQFTGGGTVHGPQPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVEGQT 135
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
TK + + + K+VL+ G E + + +NL V+++
Sbjct: 136 PSTKSAKAFLSTLTERKQVLVVIGRA-DETSERSVRNLPGVHII 178
>gi|297625783|ref|YP_003687546.1| 50S ribosomal protein L4 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921548|emb|CBL56102.1| 50S ribosomal protein L4 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 233
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 91/142 (64%), Gaps = 3/142 (2%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V N + G + L G++FD ++H+VV QLA +QGTHSTKT +EV
Sbjct: 1 MNETTSIDVVNAEGKKAGSVELPGELFDAQANVPLMHQVVTAQLAAARQGTHSTKTRAEV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G++R PQ+ GG HGP+PR ++ + KK+ L+ ALS R
Sbjct: 61 SGGGKKPWRQKGTGRARQGSIRSPQWAGGGISHGPQPREYSQRTPKKMVATALRGALSDR 120
Query: 215 AAEGKLLVFEDL---EVPSHKT 233
A EG++ V + + PS K+
Sbjct: 121 AREGRIHVVSEFVGGDKPSTKS 142
>gi|323454046|gb|EGB09917.1| hypothetical protein AURANDRAFT_14958, partial [Aureococcus
anophagefferens]
Length = 178
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
Query: 119 DVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178
DVF P+R D++H VRWQ KR+Q ++K EVSG+ +K +RQKGTG AR G+LR P
Sbjct: 1 DVFAAPLRVDVLHDCVRWQRNKRRQVHRASKRRGEVSGSTRKLYRQKGTGNARAGSLRSP 60
Query: 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVN 238
+GG HGP R +LNKK RRL L++ALSA+ EG+L V L+ P KT+ + +
Sbjct: 61 LRKGGAKAHGPAARDFKTELNKKQRRLALRVALSAKLREGRLTVAASLDTPP-KTRVVAD 119
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ + L D + E K A +N+ V+VLP V
Sbjct: 120 AL-RGRGIRSALFVDDD-LAEDFKTACRNVPLVDVLPQV 156
>gi|226365596|ref|YP_002783379.1| 50S ribosomal protein L4 [Rhodococcus opacus B4]
gi|226244086|dbj|BAH54434.1| 50S ribosomal protein L4 [Rhodococcus opacus B4]
Length = 229
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 100/164 (60%), Gaps = 6/164 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTH+TKT EV G GKKP+RQKGTGRAR
Sbjct: 24 GTVELPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGKKPYRQKGTGRAR 83
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 84 QGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 143
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
PS TK + ++ + KKVLL G K + QNL V+
Sbjct: 144 PS--TKSARTFLGEISDRKKVLLVVGRADIAAWK-SVQNLEGVH 184
>gi|373106847|ref|ZP_09521147.1| 50S ribosomal protein L4 [Stomatobaculum longum]
gi|371651786|gb|EHO17212.1| 50S ribosomal protein L4 [Stomatobaculum longum]
Length = 206
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 90/152 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNTDGKEVGTIELNDAVFGVELNEHLVHMAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I LNKK +R L+ ALS+R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTITLNKKEKRQALRCALSSRVQEQKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V E E+ KTK + ++ K +++
Sbjct: 124 IVLESFELSEVKTKKMAETLKNLKVQKALVVA 155
>gi|160947699|ref|ZP_02094866.1| hypothetical protein PEPMIC_01634 [Parvimonas micra ATCC 33270]
gi|158446833|gb|EDP23828.1| 50S ribosomal protein L4 [Parvimonas micra ATCC 33270]
Length = 207
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 89/137 (64%), Gaps = 3/137 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N +N E G + L +F + + + +++ VV+ LA R+QGT S KT +EV G
Sbjct: 1 MPKVNVYNQLGEVVGDIELNEAIFGIEVNEHVVYEVVKNHLANRRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + PKPRS+ + KKVRRL +K LS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWKGGGVVFAPKPRSYRYSVPKKVRRLAMKSVLSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTK 234
G+L + + L + + TK
Sbjct: 121 GELRILDALTIDAFSTK 137
>gi|351700425|gb|EHB03344.1| 39S ribosomal protein L4, mitochondrial [Heterocephalus glaber]
Length = 296
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/186 (38%), Positives = 104/186 (55%), Gaps = 7/186 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + + E G L DVF R D++H+V WQ ++ TKT +EV G
Sbjct: 65 QAWVESLRGYEQERVGLAELHPDVFATAPRVDVLHQVAIWQRNFKRISYAKTKTRAEVRG 124
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW+QKGTGRARHG++R P +RGG HGP+ P+S+ L KVR LGLK+AL+ +
Sbjct: 125 GGRKPWQQKGTGRARHGSIRSPIWRGGGVAHGPRGPKSYYYMLPMKVRVLGLKVALTVKL 184
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYV 271
A+ L V + LE+P+ ++++ VLL D HE++ AT L
Sbjct: 185 AQDDLHVVDSLELPTADPQYLMELARHRHWGDSVLLVD--LTHEEMPQNVVEATSRLKTF 242
Query: 272 NVLPSV 277
N++P+V
Sbjct: 243 NLIPAV 248
>gi|153854971|ref|ZP_01996184.1| hypothetical protein DORLON_02190 [Dorea longicatena DSM 13814]
gi|149752468|gb|EDM62399.1| 50S ribosomal protein L4 [Dorea longicatena DSM 13814]
Length = 206
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 92/153 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ VF V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVGKIDLSDAVFGVEVNEHLVHMAVVSQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NK+ +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPVPRDYSFKMNKREKRAALKSALTSRVEENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD 253
+V +++ KTK N ++ +K +++ +
Sbjct: 124 IVIDEINFEEAKTKNFANILKNLDVSKALVVLE 156
>gi|313472594|ref|ZP_07813083.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
1153]
gi|313448951|gb|EFR61269.1| ribosomal protein L4/L1 family protein [Lactobacillus jensenii
1153]
Length = 178
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 3/161 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
+D G + L +VF + ++++ V Q A +QGTH+TK S V G GKKPWRQKGTG
Sbjct: 12 KDAGEVTLNDNVFGIEPNENVVFDAVIRQRAGMRQGTHATKNRSAVRGGGKKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A L +K RRL +K LS + + L+V + L +
Sbjct: 72 RARQGSIRAPQWRGGGTVFGPTPRSYAYSLPRKARRLAIKSVLSQKLQDNNLIVLDQLSL 131
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLH 269
+ KTK + KVL+ +E ++L+ +NL
Sbjct: 132 DAPKTKEFKAVLGNLNVDSKVLVV---SDNENVQLSARNLE 169
>gi|427391364|ref|ZP_18885770.1| 50S ribosomal protein L4 [Actinobaculum massiliae ACS-171-V-Col2]
gi|425732007|gb|EKU94819.1| 50S ribosomal protein L4 [Actinobaculum massiliae ACS-171-V-Col2]
Length = 215
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 89/139 (64%), Gaps = 3/139 (2%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
D I V +F + G L ++FDV + ++H+VV QLA +QGTH TKT EV G
Sbjct: 3 DKKIDVLDFSGKAAGTATLPAELFDVEVNVSLLHQVVNAQLAAARQGTHKTKTRGEVRGG 62
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKP+RQKGTGRAR G++R PQF GG T+HGP+PRS+A + KK+ L +LS RA
Sbjct: 63 GKKPFRQKGTGRARQGSIRAPQFTGGGTVHGPQPRSYAQRTPKKMIAAALLQSLSDRARG 122
Query: 218 GKL---LVFEDLEVPSHKT 233
G++ F + +VPS K+
Sbjct: 123 GRIHAVTAFTENDVPSTKS 141
>gi|251799641|ref|YP_003014372.1| 50S ribosomal protein L4 [Paenibacillus sp. JDR-2]
gi|247547267|gb|ACT04286.1| ribosomal protein L4/L1e [Paenibacillus sp. JDR-2]
Length = 207
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 90/152 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G + LA VF + ++H V Q A + GTH TK SEV G G+K
Sbjct: 4 VTVFNVSGSEVGEIELADSVFGIEPNSHVLHSAVLLQQAAERAGTHKTKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+ GG T+ GP PRS+ KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPKKVRRLAIKSALSSKVIANEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + KTK N ++ +K L+
Sbjct: 124 VVLDQLTFAAPKTKEFAAILNNLKADRKALVV 155
>gi|269925832|ref|YP_003322455.1| 50S ribosomal protein L4 [Thermobaculum terrenum ATCC BAA-798]
gi|269789492|gb|ACZ41633.1| ribosomal protein L4/L1e [Thermobaculum terrenum ATCC BAA-798]
Length = 223
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 113/196 (57%), Gaps = 2/196 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ +PV N + + ++ VF + ++H+ + QLA + GTH T+T +EVSG G
Sbjct: 1 MQLPVYNLNGDIVSQLEVSDLVFGIQPNLAVMHQALVRQLANARTGTHDTRTRAEVSGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
+KPWRQKGTGRAR G++R PQ+RGG + GP PRS+ ++ +K+RRL L+ ALS + AE
Sbjct: 61 RKPWRQKGTGRARQGSIRAPQWRGGGVVFGPHPRSYEQRMPRKMRRLALRSALSQKVAEE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+LLV L +TK ++ ++ +KVL+ G +E ++ A NL V V+ +
Sbjct: 121 RLLVVTGLSEIEPRTKAMIAALEKLGLAGQKVLIATNGR-NESVQKAGSNLPNVKVIHAS 179
Query: 278 VRSTTQSFLIYYYFLD 293
+ Y FL+
Sbjct: 180 NLNIADLLKYDYLFLE 195
>gi|429220609|ref|YP_007182253.1| 50S ribosomal protein L4 [Deinococcus peraridilitoris DSM 19664]
gi|429131472|gb|AFZ68487.1| 50S ribosomal protein L4, bacterial/organelle [Deinococcus
peraridilitoris DSM 19664]
Length = 201
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 93/157 (59%), Gaps = 5/157 (3%)
Query: 121 FDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
D+P + ++H VV WQLAKR+QG+ STKT +EVS TGKK + QKGTG ARHG P
Sbjct: 17 LDLPDVNPGLLHEVVTWQLAKRRQGSASTKTRAEVSRTGKKMYSQKGTGNARHGNRAAPI 76
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIV-N 238
F GG GPKPR++ L KKVR+LGL +ALS RA GKLL + E+ F+
Sbjct: 77 FVGGGVAFGPKPRNYGFTLPKKVRQLGLAMALSDRAQSGKLLAVDGFELDGRTKSFLSWA 136
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
N ++ +++V L E + +NL +V LP
Sbjct: 137 AQNGVDGSERVFLV---TDDENARRGARNLPWVTALP 170
>gi|335047491|ref|ZP_08540512.1| 50S ribosomal protein L4 [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761299|gb|EGL38854.1| 50S ribosomal protein L4 [Parvimonas sp. oral taxon 110 str. F0139]
Length = 207
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 89/137 (64%), Gaps = 3/137 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N +N E G + L +F V + + +++ VV+ LA R+QGT S KT +EV G
Sbjct: 1 MPKVNVYNQLGEVVGDIELNEAIFGVEVNEHVVYEVVKNHLANRRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + PKPRS+ + KKVRRL ++ LS++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWKGGGVVFAPKPRSYRYSVPKKVRRLAMRSVLSSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTK 234
G+L + + L V + TK
Sbjct: 121 GELRILDALTVDAFSTK 137
>gi|333396606|ref|ZP_08478423.1| 50S ribosomal protein L4 [Lactobacillus coryniformis subsp.
coryniformis KCTC 3167]
gi|336392484|ref|ZP_08573883.1| 50S ribosomal protein L4 [Lactobacillus coryniformis subsp.
torquens KCTC 3535]
gi|420146293|ref|ZP_14653721.1| 50S ribosomal protein L4 [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398402024|gb|EJN55423.1| 50S ribosomal protein L4 [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 207
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +D G + L D+F + +++ + Q A +QGTH+ K S V G
Sbjct: 1 MPNVALYKQDGSQNGDVQLNDDIFGIAPNDNVVFDAIIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSQKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
G ++V + KTK ++ TK +++ + G +++ LA +NL V+V+ +
Sbjct: 121 GNIIVVDAFSFEQPKTKLFAESLKSLDVQTKALVVLEDG--NDQAALAARNLPNVSVVSA 178
>gi|443489527|ref|YP_007367674.1| 50S ribosomal protein L4, RplD [Mycobacterium liflandii 128FXT]
gi|442582024|gb|AGC61167.1| 50S ribosomal protein L4, RplD [Mycobacterium liflandii 128FXT]
Length = 224
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query: 96 HQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
+DL I V + G +VL ++FDVP ++H+VV Q A +QGTHSTKT +VS
Sbjct: 9 QKDLEIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVS 68
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA 215
G G+KP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA
Sbjct: 69 GGGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRA 128
Query: 216 AEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
G++ +L + PS TK + + + K+VL+ G +K + +NL V+
Sbjct: 129 RNGRIHAVTELVAGQTPS--TKSAKTFLATITDRKQVLVVIGRDDQTGVK-SVRNLPGVH 185
Query: 273 VL 274
+L
Sbjct: 186 IL 187
>gi|227519993|ref|ZP_03950042.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104]
gi|227555854|ref|ZP_03985901.1| 50S ribosomal protein L4 [Enterococcus faecalis HH22]
gi|229546963|ref|ZP_04435688.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1322]
gi|229550552|ref|ZP_04439277.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 29200]
gi|255971710|ref|ZP_05422296.1| 50S ribosomal protein L4 [Enterococcus faecalis T1]
gi|255974710|ref|ZP_05425296.1| 50S ribosomal protein L4 [Enterococcus faecalis T2]
gi|256855164|ref|ZP_05560525.1| ribosomal protein L4 [Enterococcus faecalis T8]
gi|256956861|ref|ZP_05561032.1| 50S ribosomal protein L4 [Enterococcus faecalis DS5]
gi|256960668|ref|ZP_05564839.1| 50S ribosomal protein L4 [Enterococcus faecalis Merz96]
gi|256964133|ref|ZP_05568304.1| 50S ribosomal protein L4 [Enterococcus faecalis HIP11704]
gi|257078531|ref|ZP_05572892.1| 50S ribosomal protein L4 [Enterococcus faecalis JH1]
gi|257081498|ref|ZP_05575859.1| 50S ribosomal protein L4 [Enterococcus faecalis E1Sol]
gi|257084146|ref|ZP_05578507.1| 50S ribosomal protein L4 [Enterococcus faecalis Fly1]
gi|257087973|ref|ZP_05582334.1| 50S ribosomal protein L4 [Enterococcus faecalis D6]
gi|257088650|ref|ZP_05583011.1| 50S ribosomal protein L4 [Enterococcus faecalis CH188]
gi|257417577|ref|ZP_05594571.1| 50S ribosomal protein L4 [Enterococcus faecalis ARO1/DG]
gi|257418698|ref|ZP_05595692.1| 50S ribosomal protein L4 [Enterococcus faecalis T11]
gi|257421501|ref|ZP_05598491.1| 50S ribosomal protein L4 [Enterococcus faecalis X98]
gi|293382757|ref|ZP_06628682.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis R712]
gi|293388060|ref|ZP_06632588.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis S613]
gi|294781052|ref|ZP_06746403.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
PC1.1]
gi|300861819|ref|ZP_07107899.1| 50S ribosomal protein L4 [Enterococcus faecalis TUSoD Ef11]
gi|307269088|ref|ZP_07550449.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX4248]
gi|307274172|ref|ZP_07555380.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0855]
gi|307276397|ref|ZP_07557520.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX2134]
gi|307278607|ref|ZP_07559677.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0860]
gi|307287013|ref|ZP_07567088.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0109]
gi|307291646|ref|ZP_07571521.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0411]
gi|312901121|ref|ZP_07760409.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0470]
gi|312904683|ref|ZP_07763838.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0635]
gi|312908652|ref|ZP_07767594.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO
512]
gi|312909200|ref|ZP_07768057.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO
516]
gi|312952608|ref|ZP_07771472.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0102]
gi|384512116|ref|YP_005707209.1| 50S ribosomal protein L4/L1 family protein [Enterococcus faecalis
OG1RF]
gi|384517290|ref|YP_005704595.1| 50S ribosomal protein L4 [Enterococcus faecalis 62]
gi|421512626|ref|ZP_15959429.1| LSU ribosomal protein L4p (L1e) [Enterococcus faecalis ATCC 29212]
gi|422686482|ref|ZP_16744679.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX4000]
gi|422687575|ref|ZP_16745751.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0630]
gi|422691717|ref|ZP_16749746.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0031]
gi|422695444|ref|ZP_16753430.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX4244]
gi|422698851|ref|ZP_16756736.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX1346]
gi|422700109|ref|ZP_16757965.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX1342]
gi|422702664|ref|ZP_16760493.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX1302]
gi|422706317|ref|ZP_16764018.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0043]
gi|422709569|ref|ZP_16766950.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0027]
gi|422712990|ref|ZP_16769750.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0309A]
gi|422718192|ref|ZP_16774863.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0309B]
gi|422721610|ref|ZP_16778197.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0017]
gi|422723176|ref|ZP_16779714.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX2137]
gi|422726464|ref|ZP_16782911.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0312]
gi|422728378|ref|ZP_16784796.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0012]
gi|422733231|ref|ZP_16789552.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0645]
gi|422735065|ref|ZP_16791345.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX1341]
gi|422738759|ref|ZP_16793946.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX2141]
gi|424671746|ref|ZP_18108737.1| 50S ribosomal protein L4 [Enterococcus faecalis 599]
gi|424678854|ref|ZP_18115692.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV103]
gi|424679767|ref|ZP_18116581.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV116]
gi|424684174|ref|ZP_18120900.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV129]
gi|424688385|ref|ZP_18124991.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV25]
gi|424691501|ref|ZP_18128024.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV31]
gi|424695071|ref|ZP_18131455.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV37]
gi|424696538|ref|ZP_18132883.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV41]
gi|424701829|ref|ZP_18137995.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV62]
gi|424704985|ref|ZP_18141071.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV63]
gi|424706311|ref|ZP_18142318.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV65]
gi|424719001|ref|ZP_18148229.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV68]
gi|424719922|ref|ZP_18149048.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV72]
gi|424722793|ref|ZP_18151818.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV73]
gi|424733404|ref|ZP_18161964.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV81]
gi|424735275|ref|ZP_18163745.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV85]
gi|424754618|ref|ZP_18182527.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV93]
gi|424757508|ref|ZP_18185244.1| 50S ribosomal protein L4 [Enterococcus faecalis R508]
gi|428765831|ref|YP_007151942.1| 50S ribosomal protein L4 [Enterococcus faecalis str. Symbioflor 1]
gi|430362544|ref|ZP_19427088.1| 50S ribosomal protein L4 [Enterococcus faecalis OG1X]
gi|430368710|ref|ZP_19428391.1| 50S ribosomal protein L4 [Enterococcus faecalis M7]
gi|227072541|gb|EEI10504.1| 50S ribosomal protein L4 [Enterococcus faecalis TX0104]
gi|227175021|gb|EEI55993.1| 50S ribosomal protein L4 [Enterococcus faecalis HH22]
gi|229304271|gb|EEN70267.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 29200]
gi|229307891|gb|EEN73878.1| 50S ribosomal protein L4 [Enterococcus faecalis TX1322]
gi|255962728|gb|EET95204.1| 50S ribosomal protein L4 [Enterococcus faecalis T1]
gi|255967582|gb|EET98204.1| 50S ribosomal protein L4 [Enterococcus faecalis T2]
gi|256709677|gb|EEU24724.1| ribosomal protein L4 [Enterococcus faecalis T8]
gi|256947357|gb|EEU63989.1| 50S ribosomal protein L4 [Enterococcus faecalis DS5]
gi|256951164|gb|EEU67796.1| 50S ribosomal protein L4 [Enterococcus faecalis Merz96]
gi|256954629|gb|EEU71261.1| 50S ribosomal protein L4 [Enterococcus faecalis HIP11704]
gi|256986561|gb|EEU73863.1| 50S ribosomal protein L4 [Enterococcus faecalis JH1]
gi|256989528|gb|EEU76830.1| 50S ribosomal protein L4 [Enterococcus faecalis E1Sol]
gi|256992176|gb|EEU79478.1| 50S ribosomal protein L4 [Enterococcus faecalis Fly1]
gi|256996003|gb|EEU83305.1| 50S ribosomal protein L4 [Enterococcus faecalis D6]
gi|256997462|gb|EEU83982.1| 50S ribosomal protein L4 [Enterococcus faecalis CH188]
gi|257159405|gb|EEU89365.1| 50S ribosomal protein L4 [Enterococcus faecalis ARO1/DG]
gi|257160526|gb|EEU90486.1| 50S ribosomal protein L4 [Enterococcus faecalis T11]
gi|257163325|gb|EEU93285.1| 50S ribosomal protein L4 [Enterococcus faecalis X98]
gi|291079917|gb|EFE17281.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis R712]
gi|291082511|gb|EFE19474.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis S613]
gi|294451855|gb|EFG20306.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
PC1.1]
gi|295112507|emb|CBL31144.1| Ribosomal protein L4 [Enterococcus sp. 7L76]
gi|300848344|gb|EFK76101.1| 50S ribosomal protein L4 [Enterococcus faecalis TUSoD Ef11]
gi|306497265|gb|EFM66807.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0411]
gi|306501959|gb|EFM71248.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0109]
gi|306504667|gb|EFM73867.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0860]
gi|306506877|gb|EFM76024.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX2134]
gi|306509134|gb|EFM78196.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0855]
gi|306514568|gb|EFM83122.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX4248]
gi|310625439|gb|EFQ08722.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO
512]
gi|310629396|gb|EFQ12679.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0102]
gi|310632035|gb|EFQ15318.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0635]
gi|311290442|gb|EFQ68998.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis DAPTO
516]
gi|311291793|gb|EFQ70349.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0470]
gi|315026834|gb|EFT38766.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX2137]
gi|315028874|gb|EFT40806.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX4000]
gi|315031140|gb|EFT43072.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0017]
gi|315036014|gb|EFT47946.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0027]
gi|315145337|gb|EFT89353.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX2141]
gi|315147170|gb|EFT91186.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX4244]
gi|315151072|gb|EFT95088.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0012]
gi|315153608|gb|EFT97624.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0031]
gi|315156212|gb|EFU00229.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0043]
gi|315158643|gb|EFU02660.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0312]
gi|315160729|gb|EFU04746.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0645]
gi|315165900|gb|EFU09917.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX1302]
gi|315168101|gb|EFU12118.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX1341]
gi|315171459|gb|EFU15476.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX1342]
gi|315172693|gb|EFU16710.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX1346]
gi|315573515|gb|EFU85706.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0309B]
gi|315579327|gb|EFU91518.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0630]
gi|315582137|gb|EFU94328.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
TX0309A]
gi|323479423|gb|ADX78862.1| 50S ribosomal protein L4 [Enterococcus faecalis 62]
gi|327534005|gb|AEA92839.1| ribosomal protein L4/L1 family protein [Enterococcus faecalis
OG1RF]
gi|401674314|gb|EJS80669.1| LSU ribosomal protein L4p (L1e) [Enterococcus faecalis ATCC 29212]
gi|402350557|gb|EJU85459.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV103]
gi|402355722|gb|EJU90484.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV116]
gi|402358014|gb|EJU92702.1| 50S ribosomal protein L4 [Enterococcus faecalis 599]
gi|402360829|gb|EJU95423.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV25]
gi|402362056|gb|EJU96596.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV31]
gi|402362731|gb|EJU97249.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV129]
gi|402368918|gb|EJV03217.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV37]
gi|402370793|gb|EJV04982.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV62]
gi|402377580|gb|EJV11478.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV41]
gi|402380077|gb|EJV13846.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV68]
gi|402380595|gb|EJV14345.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV63]
gi|402388119|gb|EJV21568.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV65]
gi|402392112|gb|EJV25388.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV81]
gi|402394885|gb|EJV28032.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV72]
gi|402400855|gb|EJV33662.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV73]
gi|402403067|gb|EJV35759.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV93]
gi|402404165|gb|EJV36796.1| 50S ribosomal protein L4 [Enterococcus faecalis ERV85]
gi|402406835|gb|EJV39380.1| 50S ribosomal protein L4 [Enterococcus faecalis R508]
gi|427184004|emb|CCO71228.1| 50S ribosomal protein L4 [Enterococcus faecalis str. Symbioflor 1]
gi|429512058|gb|ELA01677.1| 50S ribosomal protein L4 [Enterococcus faecalis OG1X]
gi|429516154|gb|ELA05649.1| 50S ribosomal protein L4 [Enterococcus faecalis M7]
Length = 207
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + + +++ + Q A +QGTH+ K S V G
Sbjct: 1 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + AE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+ E L + KTK F N +TK +++ + G ++ L+ +NL V+V+ S
Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENG--NDFAALSARNLPNVSVVTS 178
>gi|395512585|ref|XP_003760516.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Sarcophilus
harrisii]
Length = 297
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 119/239 (49%), Gaps = 8/239 (3%)
Query: 44 GDNLFPLKSGLSFLASRKFST---TILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLV 100
G +L P + LS L + T P LL++ L + G Q V
Sbjct: 14 GRSLIPARRALSALTGGDLEVPEHALTTASPPPVGVP---LLRRCELPVPVHRGPVQAWV 70
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + G L DVF V R DI+H V WQ ++ TKT +EV G G+K
Sbjct: 71 ESLRGYEETRLGLADLHPDVFSVAPRLDILHEVAIWQKNFKRISYAKTKTRAEVRGGGRK 130
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGK 219
PWRQKG+GRARHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + +
Sbjct: 131 PWRQKGSGRARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRVLGLKVALTVKLMQDD 190
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSV 277
L V + LE+P+ K++ + VLL D + + + A NL +N++P+V
Sbjct: 191 LHVVDSLELPTSDPKYLSDLVRHRCWGDSVLLVDVNEEMPQNIVSAVSNLKTINLIPAV 249
>gi|191639427|ref|YP_001988593.1| 50S ribosomal protein L4 [Lactobacillus casei BL23]
gi|227533961|ref|ZP_03964010.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239630350|ref|ZP_04673381.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|301067502|ref|YP_003789525.1| 50S ribosomal protein L4 [Lactobacillus casei str. Zhang]
gi|385821189|ref|YP_005857576.1| 50S ribosomal protein L4 [Lactobacillus casei LC2W]
gi|385824382|ref|YP_005860724.1| 50S ribosomal protein L4 [Lactobacillus casei BD-II]
gi|409998286|ref|YP_006752687.1| 50S ribosomal protein L4 [Lactobacillus casei W56]
gi|417981690|ref|ZP_12622355.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 12A]
gi|417984507|ref|ZP_12625129.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 21/1]
gi|417987764|ref|ZP_12628318.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 32G]
gi|417990801|ref|ZP_12631266.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei A2-362]
gi|417994124|ref|ZP_12634459.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei CRF28]
gi|417995423|ref|ZP_12635716.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei M36]
gi|418000145|ref|ZP_12640343.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei T71499]
gi|418003284|ref|ZP_12643375.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UCD174]
gi|418006319|ref|ZP_12646278.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UW1]
gi|418011886|ref|ZP_12651635.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei Lc-10]
gi|418014985|ref|ZP_12654569.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei Lpc-37]
gi|226730677|sp|B3WAL6.1|RL4_LACCB RecName: Full=50S ribosomal protein L4
gi|190713729|emb|CAQ67735.1| 50S ribosomal protein L4 [Lactobacillus casei BL23]
gi|227188338|gb|EEI68405.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239527962|gb|EEQ66963.1| 50S ribosomal protein L4 [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|300439909|gb|ADK19675.1| Ribosomal protein L4 [Lactobacillus casei str. Zhang]
gi|327383516|gb|AEA54992.1| 50S ribosomal protein L4 [Lactobacillus casei LC2W]
gi|327386709|gb|AEA58183.1| 50S ribosomal protein L4 [Lactobacillus casei BD-II]
gi|406359298|emb|CCK23568.1| 50S ribosomal protein L4 [Lactobacillus casei W56]
gi|410521829|gb|EKP96787.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 12A]
gi|410522586|gb|EKP97530.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 32G]
gi|410525301|gb|EKQ00204.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei 21/1]
gi|410530780|gb|EKQ05548.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei CRF28]
gi|410533659|gb|EKQ08327.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei A2-362]
gi|410537391|gb|EKQ11966.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei T71499]
gi|410537560|gb|EKQ12133.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei M36]
gi|410542661|gb|EKQ17096.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UCD174]
gi|410544243|gb|EKQ18579.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UW1]
gi|410551502|gb|EKQ25560.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei Lc-10]
gi|410552507|gb|EKQ26531.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei Lpc-37]
Length = 207
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 101/169 (59%), Gaps = 5/169 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGKVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + + L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDSDLVVVDGLNFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ KTK + ++ + K V+L DG + K A +NL V V+P+
Sbjct: 133 APKTKAFATVLDGLKVSDKALVVLEDGNEVAAK---AARNLPNVKVVPA 178
>gi|397698733|ref|YP_006536521.1| 50S ribosomal protein L4 [Enterococcus faecalis D32]
gi|397335372|gb|AFO43044.1| 50S ribosomal protein L4 [Enterococcus faecalis D32]
Length = 207
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + + +++ + Q A +QGTH+ K S V G
Sbjct: 1 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + AE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSDKVAE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+ E L + KTK F N +TK +++ + G ++ L+ +NL V+V+ S
Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENG--NDFAALSARNLPNVSVVTS 178
>gi|395243252|ref|ZP_10420239.1| 50S ribosomal protein L4 [Lactobacillus hominis CRBIP 24.179]
gi|394484482|emb|CCI81247.1| 50S ribosomal protein L4 [Lactobacillus hominis CRBIP 24.179]
Length = 205
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F + + ++ + Q A ++QGT + K S V G GKKPWRQKGTGRAR
Sbjct: 15 GNVDLNEEIFGIEPNESVVFDAIIRQRAGKRQGTSAVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+ I + +K RRL +K LS + A+ L+V + L + +
Sbjct: 75 QGSIRAPQWRGGGVVFGPTPRSYKIDMPRKARRLAMKSVLSQKVADNDLIVLDQLTLDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
KTK + + + + KVL+ +E +KL+ +NL V V+P
Sbjct: 135 KTKDLKTILDSAKASGKVLII---SDNENVKLSGKNLKNVKVIP 175
>gi|319940059|ref|ZP_08014413.1| 50S ribosomal protein L4 [Streptococcus anginosus 1_2_62CV]
gi|319810773|gb|EFW07100.1| 50S ribosomal protein L4 [Streptococcus anginosus 1_2_62CV]
Length = 207
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 104/179 (58%), Gaps = 7/179 (3%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAEDKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSLDTKVLVILEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|227879244|ref|ZP_03997114.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01]
gi|256849182|ref|ZP_05554615.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US]
gi|262047198|ref|ZP_06020156.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US]
gi|293380378|ref|ZP_06626449.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1]
gi|295692161|ref|YP_003600771.1| 50S ribosomal protein l4 [Lactobacillus crispatus ST1]
gi|423319621|ref|ZP_17297496.1| 50S ribosomal protein L4 [Lactobacillus crispatus FB049-03]
gi|423320357|ref|ZP_17298229.1| 50S ribosomal protein L4 [Lactobacillus crispatus FB077-07]
gi|227861138|gb|EEJ68787.1| 50S ribosomal protein L4 [Lactobacillus crispatus JV-V01]
gi|256713958|gb|EEU28946.1| 50S ribosomal protein L4 [Lactobacillus crispatus MV-1A-US]
gi|260572443|gb|EEX29005.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus MV-3A-US]
gi|290923061|gb|EFD99992.1| 50S ribosomal protein L4 [Lactobacillus crispatus 214-1]
gi|295030267|emb|CBL49746.1| 50S ribosomal protein L4 [Lactobacillus crispatus ST1]
gi|405587914|gb|EKB61635.1| 50S ribosomal protein L4 [Lactobacillus crispatus FB049-03]
gi|405606007|gb|EKB79004.1| 50S ribosomal protein L4 [Lactobacillus crispatus FB077-07]
Length = 205
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLIDNDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V V+P
Sbjct: 124 IVLDKLTMSAPKTKELVSMLNGLNADGKVLIV---SDDNNVQLSARNLTKVKVVP 175
>gi|328725484|ref|XP_003248496.1| PREDICTED: 50S ribosomal protein L4-like [Acyrthosiphon pisum]
Length = 267
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 101/166 (60%), Gaps = 3/166 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + + ++ V Q A +QGTH+ K S V G G+KPW+QKGTGRAR
Sbjct: 75 GSIELNDSVFGIEPNQHVLFEAVNLQRASLRQGTHAVKNRSAVRGGGRKPWKQKGTGRAR 134
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS++ + +L V E +
Sbjct: 135 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSSKVSGNELTVLEAFNFDAP 194
Query: 232 KTKFIVNYYNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPS 276
KTK N + +E +KKVL + D + ++L+ +N+ V V+ +
Sbjct: 195 KTKEFKNVMSNLELSKKVLFIVD--TVDSNVELSARNIPGVKVIDA 238
>gi|282926795|ref|ZP_06334422.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102]
gi|282591246|gb|EFB96319.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus A10102]
Length = 207
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 86/141 (60%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLCQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS +A E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKAQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N + +E KKVL+
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVV 155
>gi|111023097|ref|YP_706069.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1]
gi|397736517|ref|ZP_10503199.1| 50S ribosomal protein L4 [Rhodococcus sp. JVH1]
gi|110822627|gb|ABG97911.1| 50S ribosomal protein L4 [Rhodococcus jostii RHA1]
gi|396927707|gb|EJI94934.1| 50S ribosomal protein L4 [Rhodococcus sp. JVH1]
Length = 229
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTH+TKT EV G GKKP+RQKGTGRAR
Sbjct: 24 GTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGKKPYRQKGTGRAR 83
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 84 QGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 143
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDG 254
PS TK + ++ + KKVLL G
Sbjct: 144 PS--TKSARTFLGEISDRKKVLLVVG 167
>gi|419961176|ref|ZP_14477185.1| 50S ribosomal protein L4 [Rhodococcus opacus M213]
gi|424851585|ref|ZP_18275982.1| 50S ribosomal protein L4 [Rhodococcus opacus PD630]
gi|432336150|ref|ZP_19587680.1| 50S ribosomal protein L4 [Rhodococcus wratislaviensis IFP 2016]
gi|356666250|gb|EHI46321.1| 50S ribosomal protein L4 [Rhodococcus opacus PD630]
gi|414573497|gb|EKT84181.1| 50S ribosomal protein L4 [Rhodococcus opacus M213]
gi|430776918|gb|ELB92311.1| 50S ribosomal protein L4 [Rhodococcus wratislaviensis IFP 2016]
Length = 229
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTH+TKT EV G GKKP+RQKGTGRAR
Sbjct: 24 GTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGKKPYRQKGTGRAR 83
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 84 QGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 143
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDG 254
PS TK + ++ + KKVLL G
Sbjct: 144 PS--TKSARTFLGEISDRKKVLLVVG 167
>gi|421875276|ref|ZP_16306870.1| 50S ribosomal protein L4 [Brevibacillus laterosporus GI-9]
gi|372455744|emb|CCF16419.1| 50S ribosomal protein L4 [Brevibacillus laterosporus GI-9]
Length = 207
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + ++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQTGAQVGDIELAEAVFGIEPNNAVLFDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALS +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSTKVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+LLV + L + + KTK + ++ +KVL+ + + L+++N+
Sbjct: 121 NELLVLDALTMSAPKTKEFAGILSSLKVDRKVLIVTAD-FDQNIALSSRNI 170
>gi|325261495|ref|ZP_08128233.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5]
gi|324032949|gb|EGB94226.1| ribosomal protein L4/L1 family protein [Clostridium sp. D5]
Length = 206
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA +QGT KT +EVSG G+K
Sbjct: 4 VSVYNIEGKEVGTIDLNDAVFGVDVNEHLVHMAVVSQLANNRQGTQKAKTRAEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
+V ++L KTK N + K +++ + G ++ ++++ +N+ V
Sbjct: 124 IVIDELNFDEIKTKKFQEVLNNLNVNKALVVLEDG--NKNVEISARNIKEV 172
>gi|319938506|ref|ZP_08012900.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1]
gi|319806422|gb|EFW03089.1| 50S ribosomal protein L4 [Coprobacillus sp. 29_1]
Length = 207
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + I +V Q A +QGTH K +EV G G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 VFGIEPNNQAIFDMVLLQRASWRQGTHKVKNRTEVRGGGRKPWRQKGTGRARQGSIRAPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KLN+KVR+L LK ALS + + ++ V + + + + KTK ++
Sbjct: 83 WRGGGVVFGPTPRSYTFKLNRKVRQLALKSALSQKVIDNEMTVLDTITLNAPKTKDMIKV 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+E +K L+ ++E + L+ +N+ V V+ S
Sbjct: 143 LENLEANRKTLIV-MDEVNENVTLSARNIPGVKVIDS 178
>gi|291280147|ref|YP_003496982.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1]
gi|290754849|dbj|BAI81226.1| 50S ribosomal protein L4 [Deferribacter desulfuricans SSM1]
Length = 209
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 102/175 (58%), Gaps = 1/175 (0%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
VI V N N+ + L + P++ ++H VV QLA R+ GTHSTKT EV G G+
Sbjct: 3 VIEVLNQENKKVKEVNLDDSIISYPVKPWLMHEVVVMQLACRRAGTHSTKTRGEVRGGGR 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPWRQKGTGRAR G++R P + GG T+ GPKPR ++ K+ KK + LK AL A+ +
Sbjct: 63 KPWRQKGTGRARAGSIRSPLWVGGGTIFGPKPRDYSYKMPKKKVKNALKSALRAKLEDNA 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L + E L V + KTK V +KVL+ + EK+ A +N+ YV +L
Sbjct: 123 LKIIESLNVENGKTKEAVAILKNFGANRKVLVVYNE-LDEKVIRAFRNIPYVKLL 176
>gi|421489340|ref|ZP_15936722.1| 50S ribosomal protein L4 [Streptococcus oralis SK304]
gi|400365972|gb|EJP19014.1| 50S ribosomal protein L4 [Streptococcus oralis SK304]
Length = 207
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHEVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|256847764|ref|ZP_05553209.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN]
gi|256715453|gb|EEU30429.1| ribosomal protein L4/L1 [Lactobacillus coleohominis 101-4-CHN]
Length = 207
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 102/172 (59%), Gaps = 4/172 (2%)
Query: 106 FFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
FN+D G + L +F V + ++ + + Q A +QGTH+ K S V G GKKPW
Sbjct: 6 LFNQDGSQNGNIDLNDAIFGVEVNENAEYESIIRQRASLRQGTHAVKNRSAVRGGGKKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R PQFRGG + GP PRS+ +L +KVR+L +K ALS + A+ K +V
Sbjct: 66 RQKGTGRARQGSIRSPQFRGGGIVFGPTPRSYNYRLPRKVRQLAIKSALSQKVADDKFVV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+ + + KTK + + ++ +KVL+ + L+ +NL VNV+
Sbjct: 126 VDSINFDAPKTKEFASVLDNLKVNEKVLIVVTDD-DKNAGLSARNLSKVNVV 176
>gi|347520760|ref|YP_004778331.1| 50S ribosomal protein L4 [Lactococcus garvieae ATCC 49156]
gi|385832123|ref|YP_005869898.1| 50S ribosomal protein L4 [Lactococcus garvieae Lg2]
gi|343179328|dbj|BAK57667.1| 50S ribosomal protein L4 [Lactococcus garvieae ATCC 49156]
gi|343181276|dbj|BAK59614.1| 50S ribosomal protein L4 [Lactococcus garvieae Lg2]
Length = 208
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 3/172 (1%)
Query: 105 NFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ F +D G + L VF + + ++ VV Q A +QGTH+ K S VSG GKKP
Sbjct: 5 SLFKQDGTQAGEVTLNDAVFGIEPNETVVFDVVLSQRASLRQGTHAHKNRSLVSGGGKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
WRQKGTGRAR G++R PQFRGG T+ GP PR++A KL +KVR+L LK A S + + LL
Sbjct: 65 WRQKGTGRARQGSIRSPQFRGGGTVFGPNPRNYAYKLPQKVRQLALKSAYSQKVIDNTLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
++L + KT + +KVL+ +E +L+ +NL V V
Sbjct: 125 AVDELNFSAPKTSEFAKVLEALSIERKVLVVLPNEGNEFAELSARNLKNVKV 176
>gi|339006542|ref|ZP_08639117.1| 50S ribosomal protein L4 [Brevibacillus laterosporus LMG 15441]
gi|338775751|gb|EGP35279.1| 50S ribosomal protein L4 [Brevibacillus laterosporus LMG 15441]
Length = 207
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 100/171 (58%), Gaps = 4/171 (2%)
Query: 101 IPVTNFFNE---DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N+ G + LA VF + ++ + Q A ++QGTH K SEV G
Sbjct: 1 MPKVALYNQTGAQVGDIELAEAVFGIEPNNAVLFDAIVMQQASQRQGTHDVKNRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + GP PR + KLN+KVRRL LK ALS +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWKGGGVVFGPTPRKYGYKLNRKVRRLALKSALSTKVQN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+LLV + L + + KTK + ++ +KVL+ + + L+++N+
Sbjct: 121 NELLVLDALTLSAPKTKEFAGILSSLKVDRKVLIVTAD-FDQNIALSSRNI 170
>gi|225376410|ref|ZP_03753631.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM
16841]
gi|225211786|gb|EEG94140.1| hypothetical protein ROSEINA2194_02052 [Roseburia inulinivorans DSM
16841]
Length = 206
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 94/158 (59%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L +F V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VAVYNMEGKEVGSLELNDAIFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ G + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNESKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIH 258
+V ++L++ KTK V N ++ K +++ + ++
Sbjct: 124 VVVDELKLDEIKTKKFVEVMNNLKVEKALVVLNDNDVN 161
>gi|315222819|ref|ZP_07864705.1| ribosomal protein L4/L1 family protein [Streptococcus anginosus
F0211]
gi|418962820|ref|ZP_13514670.1| 50S ribosomal protein L4 [Streptococcus anginosus subsp. whileyi
CCUG 39159]
gi|418966151|ref|ZP_13517900.1| 50S ribosomal protein L4 [Streptococcus constellatus subsp.
constellatus SK53]
gi|423069701|ref|ZP_17058486.1| 50S ribosomal protein L4 [Streptococcus intermedius F0395]
gi|423071652|ref|ZP_17060425.1| 50S ribosomal protein L4 [Streptococcus intermedius F0413]
gi|424788622|ref|ZP_18215373.1| 50S ribosomal protein L4 [Streptococcus intermedius BA1]
gi|315188122|gb|EFU21851.1| ribosomal protein L4/L1 family protein [Streptococcus anginosus
F0211]
gi|355363426|gb|EHG11163.1| 50S ribosomal protein L4 [Streptococcus intermedius F0413]
gi|355364123|gb|EHG11857.1| 50S ribosomal protein L4 [Streptococcus intermedius F0395]
gi|383340805|gb|EID19093.1| 50S ribosomal protein L4 [Streptococcus constellatus subsp.
constellatus SK53]
gi|383345023|gb|EID23168.1| 50S ribosomal protein L4 [Streptococcus anginosus subsp. whileyi
CCUG 39159]
gi|422112607|gb|EKU16390.1| 50S ribosomal protein L4 [Streptococcus intermedius BA1]
Length = 207
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 102/180 (56%), Gaps = 9/180 (5%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|357012814|ref|ZP_09077813.1| 50S ribosomal protein L4 [Paenibacillus elgii B69]
Length = 207
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 98/168 (58%), Gaps = 1/168 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA VF + +++ V Q A + GTH TK SEV G G+K
Sbjct: 4 VAVFNVSGAQVGEVELADSVFGIEPHVHVLNEAVLMQRASLRAGTHKTKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG + GP PRS+A KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGIVFGPTPRSYAYKLPKKVRRLAIKSALSSKVKASEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+V + L++ KTK N ++ +K L+ E + L+ +N+
Sbjct: 124 IVLDQLQLAQPKTKEFAAILNNLKVDRKALVVT-AAYDENVALSARNI 170
>gi|169830029|ref|YP_001700187.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41]
gi|226730684|sp|B1HMX9.1|RL4_LYSSC RecName: Full=50S ribosomal protein L4
gi|168994517|gb|ACA42057.1| 50S ribosomal protein L4 [Lysinibacillus sphaericus C3-41]
Length = 207
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ V Q A +QG H K SEV+G G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL LK ALSA+ E LV + L + +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLDALTLAAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK + KK L + E + L+ +N+ V VL
Sbjct: 135 KTKEFTKILKDLSLEKKSLFVTAD-LDENVALSARNIPGVTVL 176
>gi|343520774|ref|ZP_08757743.1| 50S ribosomal protein L4 [Parvimonas sp. oral taxon 393 str. F0440]
gi|343397732|gb|EGV10266.1| 50S ribosomal protein L4 [Parvimonas sp. oral taxon 393 str. F0440]
Length = 207
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 89/137 (64%), Gaps = 3/137 (2%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N +N E G + L +F + + + +++ VV+ LA R+QGT S KT +EV G
Sbjct: 1 MPKVNVYNQLGEVVGDIELNEAIFGIEVNEHVVYEVVKNHLANRRQGTQSAKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ++GG + PKPRS+ + KKVRRL +K L+++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRAPQWKGGGVVFAPKPRSYRYSVPKKVRRLAMKSVLTSKVLE 120
Query: 218 GKLLVFEDLEVPSHKTK 234
G+L + + L V + TK
Sbjct: 121 GELRILDALTVDAFSTK 137
>gi|224477219|ref|YP_002634825.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254803753|sp|B9DM18.1|RL4_STACT RecName: Full=50S ribosomal protein L4
gi|222421826|emb|CAL28640.1| 50S ribosomal protein L4 [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 207
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 86/141 (60%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + KD+I + Q A +QGTHS K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDSVFAIEPNKDVIFEAINLQRASLRQGTHSVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS + E V + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQENGFTVVDAFGLEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK + +E KKVL+
Sbjct: 135 KTKEFTKVLSNLELPKKVLVV 155
>gi|403738730|ref|ZP_10951331.1| 50S ribosomal protein L4 [Austwickia chelonae NBRC 105200]
gi|403191380|dbj|GAB78101.1| 50S ribosomal protein L4 [Austwickia chelonae NBRC 105200]
Length = 218
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 108/180 (60%), Gaps = 8/180 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + N + G + L ++FDV +IH+VV QLA +QGTH+TKT EV G GKK
Sbjct: 4 IDILNAEGQKSGSIELPSELFDVQTNVPLIHQVVVAQLAAARQGTHATKTRGEVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G+ R PQF GG T+HGP+PR +A + KK++ L+ ALS RA G++
Sbjct: 64 PYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYAQRTPKKMKVAALRGALSDRARHGRI 123
Query: 221 LV---FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL-ATQNLHYVNVLPS 276
F + + PS TK + N++ + +L+ G E++ L + +N+ V+ L +
Sbjct: 124 HCVSSFVEGDAPS--TKVAASLLNKLTERRNLLVVLG--RDEEVSLRSIRNIEAVHCLAA 179
>gi|299541933|ref|ZP_07052256.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1]
gi|424739372|ref|ZP_18167791.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZB2]
gi|298725671|gb|EFI66312.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZC1]
gi|422946769|gb|EKU41175.1| 50S ribosomal protein L4 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 94/163 (57%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ V Q A +QG H K SEV+G G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSEVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL LK ALSA+ E LV + L + +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKLPKKVRRLALKSALSAKVVEQNFLVLDALTLAAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK + KK L + E + L+ +N+ V VL
Sbjct: 135 KTKEFTKILKDLSLEKKSLFVTAD-LDENVALSARNIPGVTVL 176
>gi|383753516|ref|YP_005432419.1| putative 50S ribosomal protein L4 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365568|dbj|BAL82396.1| putative 50S ribosomal protein L4 [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 207
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 93/151 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + N+ G + L ++F V + ++H+ V QLA ++ GTH+TKT S V G G+K
Sbjct: 4 VAVYDITNKQVGDIELNDNIFGVEMNAGLLHQAVVMQLAAQRLGTHATKTRSFVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T+ GP PR +A + +K RRL +K ALS + G+L
Sbjct: 64 PWKQKGTGRARAGSTRSPLWVGGGTVFGPHPRKYAFSMPRKQRRLAIKCALSDKVKNGEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLL 251
+V + LE + KTK +V + KK LL
Sbjct: 124 VVLDSLEFEAAKTKQVVKMMSDFSVEKKALL 154
>gi|422871944|ref|ZP_16918437.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1087]
gi|328945216|gb|EGG39370.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1087]
Length = 207
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 104/179 (58%), Gaps = 7/179 (3%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT V + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFVKVLAALSIDTKVLVILEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|224370690|ref|YP_002604854.1| 50S ribosomal protein L4 [Desulfobacterium autotrophicum HRM2]
gi|259491553|sp|C0Q9X2.1|RL4_DESAH RecName: Full=50S ribosomal protein L4
gi|223693407|gb|ACN16690.1| RplD [Desulfobacterium autotrophicum HRM2]
Length = 207
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 104/174 (59%), Gaps = 2/174 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E LA +VF +P++K ++H VVR QLA+R+ GT +K SEVSG+ +K
Sbjct: 4 VDVLNRSGEKVSEAFLADEVFSIPVKKSVLHDVVRMQLARRRSGTAKSKGRSEVSGSTRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTG AR G+++ P RGG + GP PRS+A + KKVR L LK+ALS++ A +L
Sbjct: 64 LYRQKGTGNARSGSVKSPLRRGGGVIFGPAPRSYAYAIPKKVRALALKMALSSKLAANEL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
V + + S KTK + + + +++ DG L L+ +N+ V V+
Sbjct: 124 SVIDTFAMDSIKTKEFDSIIDHLGLKNTLIVIDGD--DRNLVLSARNIPDVKVI 175
>gi|392988176|ref|YP_006486769.1| 50S ribosomal protein L4 [Enterococcus hirae ATCC 9790]
gi|392335596|gb|AFM69878.1| 50S ribosomal protein L4 [Enterococcus hirae ATCC 9790]
Length = 207
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + + +++ + Q A +QGTH+ K S V G
Sbjct: 1 MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVYDAIVMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + AE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPS 276
L+ E L + KTK + KVL+ + G ++ L+ +NL V V+ S
Sbjct: 121 NNLVAIEGLSFDAPKTKEFKQVLANLSIDSKVLVVLENG--NDFAALSARNLPNVTVVTS 178
>gi|335031215|ref|ZP_08524667.1| 50S ribosomal protein L4 [Streptococcus anginosus SK52 = DSM 20563]
gi|333770269|gb|EGL47318.1| 50S ribosomal protein L4 [Streptococcus anginosus SK52 = DSM 20563]
Length = 207
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 102/180 (56%), Gaps = 9/180 (5%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAEDKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|302390959|ref|YP_003826779.1| 50S ribosomal protein L4P [Acetohalobium arabaticum DSM 5501]
gi|302203036|gb|ADL11714.1| LSU ribosomal protein L4P [Acetohalobium arabaticum DSM 5501]
Length = 209
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 97/163 (59%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +FDV I + ++H V QLA ++ GT STKT +EV G G+KPWRQKGTGRAR
Sbjct: 15 GEVELNQSIFDVEINEHVVHEAVTAQLAAKRAGTASTKTRAEVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG++R P + GG T GP+PR ++ + KKV+RL +K AL+A+ + +L V +
Sbjct: 75 HGSIRSPIWVGGGTTFGPQPRDYSKDIPKKVKRLAVKSALTAKVQDEELTVVDGFNFDQP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK +V ++ K +L + L + +N+ V VL
Sbjct: 135 KTKQMVKVLEALDAKDKKVLVITAEKDDNLYKSARNIPDVKVL 177
>gi|379724669|ref|YP_005316800.1| 50S ribosomal protein L4 [Paenibacillus mucilaginosus 3016]
gi|386727421|ref|YP_006193747.1| 50S ribosomal protein L4 [Paenibacillus mucilaginosus K02]
gi|378573341|gb|AFC33651.1| 50S ribosomal protein L4 [Paenibacillus mucilaginosus 3016]
gi|384094546|gb|AFH65982.1| 50S ribosomal protein L4 [Paenibacillus mucilaginosus K02]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 1/168 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + LA VF + +++ V Q A + GTH TK SEV G G+K
Sbjct: 4 VAVFNVSGAQVGEVELAESVFGIEPHLHVLNEAVLMQRASLRAGTHKTKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ++GG + GP PRS++ KL KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWKGGGIVFGPTPRSYSYKLPKKVRRLAIKSALSSKVKSSEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+V + L++ + KTK N ++ +K L+ E + L+ +N+
Sbjct: 124 IVLDQLQMAAPKTKEFAAILNNLKVDRKALVVT-AAYEENVALSARNI 170
>gi|404416724|ref|ZP_10998539.1| 50S ribosomal protein L4 [Staphylococcus arlettae CVD059]
gi|403490928|gb|EJY96458.1| 50S ribosomal protein L4 [Staphylococcus arlettae CVD059]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 85/141 (60%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + KD++ + Q A +QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELNDAVFAIEPNKDVLFEAITLQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L V + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSYKVQENALTVVDAINFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK +E KKVL+
Sbjct: 135 KTKEFKTVLANLEQPKKVLVV 155
>gi|240145877|ref|ZP_04744478.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis
L1-82]
gi|257202026|gb|EEV00311.1| ribosomal protein L4/L1 family protein [Roseburia intestinalis
L1-82]
gi|291535431|emb|CBL08543.1| LSU ribosomal protein L4P [Roseburia intestinalis M50/1]
Length = 206
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 92/153 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA +QGT KT SEV G G+K
Sbjct: 4 VAVYNMEGKEVGSLELNDAVFGVEVNEHLVHMAVLQQLANNRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ G + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTHGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVNESKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD 253
+V ++L++ S KTK V N ++ K +++ +
Sbjct: 124 IVVDELKLDSIKTKNFVQVLNNLKVEKALVVLN 156
>gi|414159413|ref|ZP_11415699.1| 50S ribosomal protein L4 [Staphylococcus simulans ACS-120-V-Sch1]
gi|410884415|gb|EKS32241.1| 50S ribosomal protein L4 [Staphylococcus simulans ACS-120-V-Sch1]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 87/141 (61%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + KD++ + Q A +QGTHS K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDAVFAIEPNKDVLFEAINLQRASLRQGTHSVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E + + + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQENEFKIIDAFGLEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK + +E KKVL+
Sbjct: 135 KTKEFTKVLSNLELPKKVLVV 155
>gi|315037531|ref|YP_004031099.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112]
gi|325956004|ref|YP_004286614.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC]
gi|385816889|ref|YP_005853279.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL1118]
gi|312275664|gb|ADQ58304.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL 1112]
gi|325332569|gb|ADZ06477.1| 50S ribosomal protein L4 [Lactobacillus acidophilus 30SC]
gi|327182827|gb|AEA31274.1| 50S ribosomal protein L4 [Lactobacillus amylovorus GRL1118]
Length = 205
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + +++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNDNVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLIDNDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V +P
Sbjct: 124 IVLDKLTMSAPKTKELVSMLNSLNADGKVLIV---TDDNNVQLSARNLAKVKAVP 175
>gi|389580454|ref|ZP_10170481.1| 50S ribosomal protein L4, bacterial/organelle [Desulfobacter
postgatei 2ac9]
gi|389402089|gb|EIM64311.1| 50S ribosomal protein L4, bacterial/organelle [Desulfobacter
postgatei 2ac9]
Length = 206
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 103/159 (64%), Gaps = 2/159 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L ++F +P++ ++H VVR QL ++ GT ++KT VSG+ +K +RQKGTG AR G++
Sbjct: 19 LPDEIFSIPVKTSVLHEVVRSQLVSKRVGTAASKTRGMVSGSTRKLFRQKGTGNARAGSV 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
+ P +GG + GP PRS+ IK+ KKVR+L LK+ALSA+ ++ +L V + LE+ KTK
Sbjct: 79 KSPLRKGGGVIFGPSPRSYEIKVPKKVRKLALKMALSAKFSDSQLFVVDALELEEIKTKA 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+ N + ++ +++ D KL L+++N+ V V+
Sbjct: 139 LANVLSTLKLNDLLIVSDAD--DAKLALSSRNIPDVKVI 175
>gi|253580620|ref|ZP_04857884.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39B_FAA]
gi|251847991|gb|EES75957.1| 50S ribosomal protein L4/L1 [Ruminococcus sp. 5_1_39BFAA]
Length = 206
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 83/134 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VTVYNMEGNEVGTMELNDAVFGVEVNEHLVHLAVVRQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR + +K+NKK RR LK AL+++ + KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQDNKL 123
Query: 221 LVFEDLEVPSHKTK 234
+V + L + KTK
Sbjct: 124 VVVDALTLADVKTK 137
>gi|381208332|ref|ZP_09915403.1| 50S ribosomal protein L4 [Lentibacillus sp. Grbi]
Length = 208
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +D G + L VF + ++H V Q A +QGTH K SE G
Sbjct: 1 MPKVTLLKQDGSQAGDVELNDSVFGIEPNTHVLHEAVLMQRASMRQGTHDVKNRSERRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ K+ KKVRRL LK A S++ E
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKMPKKVRRLALKSAFSSKVQE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
L+V E++ + KTK IV + KVL+
Sbjct: 121 DNLVVLENIAFDAPKTKEIVKMLEALNVDSKVLIV 155
>gi|395238078|ref|ZP_10416057.1| 50S ribosomal protein L4 [Turicella otitidis ATCC 51513]
gi|423351629|ref|ZP_17329260.1| 50S ribosomal protein L4 [Turicella otitidis ATCC 51513]
gi|237510710|gb|ACQ99342.1| ribosomal protein L4 [Turicella otitidis]
gi|394486514|emb|CCI84145.1| 50S ribosomal protein L4 [Turicella otitidis ATCC 51513]
gi|404386349|gb|EJZ81512.1| 50S ribosomal protein L4 [Turicella otitidis ATCC 51513]
Length = 217
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 92/143 (64%), Gaps = 3/143 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++F+ ++ H+VV QLA +QGTHSTKT EV G GKKP+RQKGTGRAR
Sbjct: 17 GQVELPSEIFEREASIELTHQVVVAQLAAARQGTHSTKTRGEVRGGGKKPYRQKGTGRAR 76
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQF GG +HGPKPR ++ + KK++R L ALS RAA ++ V E+L VP
Sbjct: 77 QGSIRAPQFTGGGIVHGPKPRDYSQRTPKKMKRAALHGALSNRAANDRIHVVEEL-VPGT 135
Query: 232 K--TKFIVNYYNQMENTKKVLLC 252
K TK ++ ++ K VLL
Sbjct: 136 KPSTKAARSFLERLTGRKNVLLV 158
>gi|417938758|ref|ZP_12582052.1| 50S ribosomal protein L4 [Streptococcus infantis SK970]
gi|343390773|gb|EGV03352.1| 50S ribosomal protein L4 [Streptococcus infantis SK970]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL+ +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLSDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|288818163|ref|YP_003432511.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6]
gi|384128927|ref|YP_005511540.1| 50S ribosomal protein L4 [Hydrogenobacter thermophilus TK-6]
gi|288787563|dbj|BAI69310.1| ribosomal protein L4 [Hydrogenobacter thermophilus TK-6]
gi|308751764|gb|ADO45247.1| ribosomal protein L4/L1e [Hydrogenobacter thermophilus TK-6]
Length = 199
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 109/173 (63%), Gaps = 15/173 (8%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L DVF+V +++ I+ V++WQLA R+QGTHSTKT E+S +G+K QKGTG AR
Sbjct: 4 GDMELRDDVFNVEVKRHILWEVIKWQLACRRQGTHSTKTRGELSYSGRKLLPQKGTGNAR 63
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
HG F GG HGP+P + L KKVR+LGLK+ALS++A EGK+L+F+ + +V
Sbjct: 64 HGDRGANIFVGGGVAHGPRPTDYYYSLPKKVRKLGLKMALSSKAQEGKMLLFDSINIGDV 123
Query: 229 PSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQ---NLHYVNVLPS 276
P KTK + + N +++ K ++ I EK ++ + NL V VLP+
Sbjct: 124 P--KTKKAIEFLNSNGIKDIKVTIV-----IPEKDEIVMKSFRNLPNVKVLPA 169
>gi|421490226|ref|ZP_15937600.1| 50S ribosomal protein L4 [Streptococcus anginosus SK1138]
gi|400373631|gb|EJP26559.1| 50S ribosomal protein L4 [Streptococcus anginosus SK1138]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 102/180 (56%), Gaps = 9/180 (5%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAEDKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDSKVLVILEEG---NEFATLSARNLPNVK----VATATTASVL 184
>gi|171778376|ref|ZP_02919555.1| hypothetical protein STRINF_00406 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|288904274|ref|YP_003429495.1| 50S ribosomal protein L4 [Streptococcus gallolyticus UCN34]
gi|325977253|ref|YP_004286969.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|374337088|ref|YP_005093786.1| 50S ribosomal protein L4 [Streptococcus macedonicus ACA-DC 198]
gi|379704438|ref|YP_005202897.1| 50S ribosomal protein L4 [Streptococcus infantarius subsp.
infantarius CJ18]
gi|386336740|ref|YP_006032909.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|171282907|gb|EDT48331.1| 50S ribosomal protein L4 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|288730999|emb|CBI12543.1| ribosomal protein L4 [Streptococcus gallolyticus UCN34]
gi|325177181|emb|CBZ47225.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334279376|dbj|BAK26950.1| 50S ribosomal protein L4 [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|372283186|emb|CCF01342.1| LSU ribosomal protein L4p (L1e) [Streptococcus macedonicus ACA-DC
198]
gi|374681137|gb|AEZ61426.1| ribosomal protein L4 [Streptococcus infantarius subsp. infantarius
CJ18]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 97/169 (57%), Gaps = 9/169 (5%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT N
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVESLSFAAPKTAEFANV 142
Query: 240 YNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 143 LSALNVDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|258646052|ref|ZP_05733521.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM
15470]
gi|260403422|gb|EEW96969.1| ribosomal protein L4/L1 family protein [Dialister invisus DSM
15470]
Length = 208
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 93/157 (59%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF V + +IH+ V Q+A + GTH+TKT V G G+KPW+QKGTGRAR
Sbjct: 15 GEIELNDSVFGVEYNEAVIHQAVVRQMANERLGTHATKTRGLVRGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R P + GG T+ GP PRSHA + +K R+L +K ALS + +L+V + + +
Sbjct: 75 VGSIRSPLWVGGGTVFGPTPRSHAKDMTRKARQLAVKSALSEKLRANELIVVDAINFDTP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
KTK +V + K L+ DGG E L+ +N+
Sbjct: 135 KTKEVVKFLAAFNVDGKALIVDGGTASENTVLSARNI 171
>gi|260558288|ref|ZP_05830484.1| ribosomal protein L4 [Enterococcus faecium C68]
gi|430820843|ref|ZP_19439464.1| 50S ribosomal protein L4 [Enterococcus faecium E0045]
gi|430826442|ref|ZP_19444625.1| 50S ribosomal protein L4 [Enterococcus faecium E0164]
gi|430890749|ref|ZP_19484439.1| 50S ribosomal protein L4 [Enterococcus faecium E1575]
gi|260075462|gb|EEW63768.1| ribosomal protein L4 [Enterococcus faecium C68]
gi|430439103|gb|ELA49481.1| 50S ribosomal protein L4 [Enterococcus faecium E0045]
gi|430445069|gb|ELA54856.1| 50S ribosomal protein L4 [Enterococcus faecium E0164]
gi|430555797|gb|ELA95326.1| 50S ribosomal protein L4 [Enterococcus faecium E1575]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + + +++ + Q A +QGTH+ K S V G
Sbjct: 1 MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVYDAIVMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + AE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPS 276
L+ E L+ + KTK + KVL+ + G ++ L+ +NL V+V+ S
Sbjct: 121 NNLVAIEGLKFDAPKTKEFKQVLANLSIDSKVLVVLEKG--NDFAALSARNLPNVSVVTS 178
>gi|256618379|ref|ZP_05475225.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 4200]
gi|256597906|gb|EEU17082.1| 50S ribosomal protein L4 [Enterococcus faecalis ATCC 4200]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 105/180 (58%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + + +++ + Q A QGTH+ K S V G
Sbjct: 1 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLGQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + AE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSDKVAE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+ E L + KTK F N +TK +++ + G ++ L+ +NL V+V+ S
Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENG--NDFAALSARNLPNVSVVTS 178
>gi|229829428|ref|ZP_04455497.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM
14600]
gi|229791859|gb|EEP27973.1| hypothetical protein GCWU000342_01518 [Shuttleworthia satelles DSM
14600]
Length = 206
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 101/188 (53%), Gaps = 8/188 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ M LA VF V + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VSVFNMEGKEVEQMELADSVFGVEVNDHLVHMAVLQQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLN+K +R L ALS+R E KL
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGVVVFAPTPRDYSFKLNRKEKRAALLSALSSRVQENKL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V + L KTK ++ K +++ G EK ++ +N +P V +
Sbjct: 124 IVVDQLAFDEIKTKKFAEVLKNLKVEKALVVL--GQDDEKAIISARN------IPDVKTA 175
Query: 281 TTQSFLIY 288
T S +Y
Sbjct: 176 QTNSINVY 183
>gi|254973732|ref|ZP_05270204.1| 50S ribosomal protein L4 [Clostridium difficile QCD-66c26]
gi|255091121|ref|ZP_05320599.1| 50S ribosomal protein L4 [Clostridium difficile CIP 107932]
gi|255099233|ref|ZP_05328210.1| 50S ribosomal protein L4 [Clostridium difficile QCD-63q42]
gi|255305016|ref|ZP_05349188.1| 50S ribosomal protein L4 [Clostridium difficile ATCC 43255]
gi|255312776|ref|ZP_05354359.1| 50S ribosomal protein L4 [Clostridium difficile QCD-76w55]
gi|255515535|ref|ZP_05383211.1| 50S ribosomal protein L4 [Clostridium difficile QCD-97b34]
gi|255648630|ref|ZP_05395532.1| 50S ribosomal protein L4 [Clostridium difficile QCD-37x79]
gi|306518753|ref|ZP_07405100.1| 50S ribosomal protein L4 [Clostridium difficile QCD-32g58]
gi|384359400|ref|YP_006197252.1| 50S ribosomal protein L4 [Clostridium difficile BI1]
gi|400927241|ref|YP_001086538.2| 50S ribosomal protein L4 [Clostridium difficile 630]
gi|328887509|emb|CAJ66889.2| 50S ribosomal protein L4 [Clostridium difficile 630]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ +F V + +++ VV+ QLA ++QGT S KT +EV G G+K
Sbjct: 4 LNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQNSEV 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + + KTK N + KK L+
Sbjct: 124 IVLDALNMDAPKTKEFAQILNNINAAKKALVV 155
>gi|392429440|ref|YP_006470454.1| 50S ribosomal protein L4 [Streptococcus intermedius JTH08]
gi|419776742|ref|ZP_14302661.1| 50S ribosomal protein L4 [Streptococcus intermedius SK54]
gi|383845427|gb|EID82830.1| 50S ribosomal protein L4 [Streptococcus intermedius SK54]
gi|391758589|dbj|BAM24206.1| 50S ribosomal protein L4 [Streptococcus intermedius JTH08]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/180 (42%), Positives = 102/180 (56%), Gaps = 9/180 (5%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG T+ GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGTVFGPTPRSYAYKLPQKVRRLALKSVYSEKIAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|169350796|ref|ZP_02867734.1| hypothetical protein CLOSPI_01570 [Clostridium spiroforme DSM 1552]
gi|169292382|gb|EDS74515.1| 50S ribosomal protein L4 [Clostridium spiroforme DSM 1552]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + K + +V Q A +QGTH K +EVSG GKKPWRQKGTGRAR G++R PQ
Sbjct: 23 VFGIEPNKQALFDMVLLQRASLRQGTHKVKNRTEVSGGGKKPWRQKGTGRARQGSIRAPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KLN+KVRRL LK ALS + + + + E ++ + KTK +V
Sbjct: 83 WRGGGVVFGPTPRSYKFKLNRKVRRLALKSALSTKIIDNEFMALEAIKFDAPKTKEMVKV 142
Query: 240 YNQMEN-TKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
++ TK +++ D I E + + N+ V +L +
Sbjct: 143 LANLDAPTKTLIVVD--EIDENVARSANNIPGVKLLDA 178
>gi|296449798|ref|ZP_06891567.1| ribosomal protein L4/L1 family protein [Clostridium difficile
NAP08]
gi|296877862|ref|ZP_06901884.1| ribosomal protein L4/L1 family protein [Clostridium difficile
NAP07]
gi|296261396|gb|EFH08222.1| ribosomal protein L4/L1 family protein [Clostridium difficile
NAP08]
gi|296431162|gb|EFH16987.1| ribosomal protein L4/L1 family protein [Clostridium difficile
NAP07]
Length = 217
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ +F V + +++ VV+ QLA ++QGT S KT +EV G G+K
Sbjct: 14 LNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRK 73
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ ++
Sbjct: 74 PWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQNSEV 133
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + + KTK N + KK L+
Sbjct: 134 IVLDALNMDAPKTKEFAQILNNINAAKKALVV 165
>gi|255654163|ref|ZP_05399572.1| 50S ribosomal protein L4 [Clostridium difficile QCD-23m63]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ +F V + +++ VV+ QLA ++QGT S KT +EV G G+K
Sbjct: 4 LNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ ++
Sbjct: 64 PWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQNSEV 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + + KTK N + KK L+
Sbjct: 124 IVLDALNMDAPKTKEFAQILNNINAAKKALVV 155
>gi|260681847|ref|YP_003213132.1| 50S ribosomal protein L4 [Clostridium difficile CD196]
gi|260685445|ref|YP_003216578.1| 50S ribosomal protein L4 [Clostridium difficile R20291]
gi|423081657|ref|ZP_17070259.1| 50S ribosomal protein L4 [Clostridium difficile 002-P50-2011]
gi|423085189|ref|ZP_17073644.1| 50S ribosomal protein L4 [Clostridium difficile 050-P50-2011]
gi|423089504|ref|ZP_17077862.1| 50S ribosomal protein L4 [Clostridium difficile 70-100-2010]
gi|260208010|emb|CBA60188.1| 50S ribosomal protein L4 [Clostridium difficile CD196]
gi|260211461|emb|CBE01581.1| 50S ribosomal protein L4 [Clostridium difficile R20291]
gi|357550235|gb|EHJ32060.1| 50S ribosomal protein L4 [Clostridium difficile 002-P50-2011]
gi|357550521|gb|EHJ32335.1| 50S ribosomal protein L4 [Clostridium difficile 050-P50-2011]
gi|357558114|gb|EHJ39621.1| 50S ribosomal protein L4 [Clostridium difficile 70-100-2010]
Length = 217
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L+ +F V + +++ VV+ QLA ++QGT S KT +EV G G+K
Sbjct: 14 LNVLNVSGQNVGEIELSDSIFGVEVNGHVLYEVVKNQLANKRQGTQSAKTRAEVRGGGRK 73
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R Q+ GG PKPRS+ L KKVRRL +K ALS++ ++
Sbjct: 74 PWKQKGTGRARQGSTRSVQWVGGGVAFAPKPRSYKYTLPKKVRRLAMKSALSSKVQNSEV 133
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + L + + KTK N + KK L+
Sbjct: 134 IVLDALNMDAPKTKEFAQILNNINAAKKALVV 165
>gi|256844430|ref|ZP_05549916.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN]
gi|256613508|gb|EEU18711.1| 50S ribosomal protein L4/L1 [Lactobacillus crispatus 125-2-CHN]
Length = 205
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 101/175 (57%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSRKLIDNDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V V+P
Sbjct: 124 IVLDKLTMSAPKTKELVSILNGLNADGKVLIV---SDDNNVQLSARNLTKVKVVP 175
>gi|386712467|ref|YP_006178789.1| 50S ribosomal protein L4 [Halobacillus halophilus DSM 2266]
gi|384072022|emb|CCG43512.1| 50S ribosomal protein L4 [Halobacillus halophilus DSM 2266]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/171 (38%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L VF + ++H V Q A +QGTH K SEVSG G+K
Sbjct: 4 VALLNQSGSNVGDVELNDAVFGIEPNTHVLHETVLMQRANLRQGTHKVKGRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ GG + GP PRS++ + KKVRRL L+ A S++ E +
Sbjct: 64 PWRQKGTGRARQGSIRAPQWVGGGAVFGPSPRSYSYTMPKKVRRLALQSAYSSKVKEENI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
+V E L + + KTK +V+ ++ +K L+ E + L++ N+ V
Sbjct: 124 IVLESLSLDAPKTKEVVSLLKALDVNEKALIVTAEK-DENVTLSSNNIPTV 173
>gi|335040796|ref|ZP_08533918.1| ribosomal protein L4/L1e [Caldalkalibacillus thermarum TA2.A1]
gi|334179371|gb|EGL82014.1| ribosomal protein L4/L1e [Caldalkalibacillus thermarum TA2.A1]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 93/155 (60%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G + LA VF + + ++H V Q A + GTH+TK + V G
Sbjct: 1 MPKVTLYNQNGSIVGEIELADSVFGIEPNQYVLHDAVVMQRASMRAGTHATKNRAAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRARHG++R PQ+ GG + GP PR + KL KKVRRL +K ALS++
Sbjct: 61 GRKPWRQKGTGRARHGSIRAPQWVGGGVVFGPTPRKYGYKLPKKVRRLAIKSALSSKVKN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
++ V + L + KTK +VN ++ +K L+
Sbjct: 121 DEIKVLDQLTLEKPKTKEMVNILKNLDVNRKALIV 155
>gi|160932200|ref|ZP_02079591.1| hypothetical protein CLOLEP_01035 [Clostridium leptum DSM 753]
gi|156868802|gb|EDO62174.1| 50S ribosomal protein L4 [Clostridium leptum DSM 753]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 92/152 (60%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + L+ VF + ++H VV LA ++QGT S T SEVSG GKK
Sbjct: 4 VAVFDVTGKEVGKIDLSDAVFGIEPNAVVMHEVVVNYLANQRQGTQSALTRSEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ G + PKPRS+ +NKKVRRL LK ALS++ E L
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTHGGIVFAPKPRSYRYTVNKKVRRLALKSALSSKVQEESL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + + + ++KTK + N + KK L+
Sbjct: 124 VVLDSMTMDAYKTKTVAAMLNALGAEKKALIV 155
>gi|403514314|ref|YP_006655134.1| 50S ribosomal protein L4 [Lactobacillus helveticus R0052]
gi|403079752|gb|AFR21330.1| 50S ribosomal protein L4 [Lactobacillus helveticus R0052]
Length = 205
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 IKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMIDKDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V +P
Sbjct: 124 IVLDKLTMSAPKTKDLVSMLNSLNVDGKVLIV---SDDNNVQLSARNLAKVKAVP 175
>gi|118616572|ref|YP_904904.1| 50S ribosomal protein L4 [Mycobacterium ulcerans Agy99]
gi|166234692|sp|A0PM64.1|RL4_MYCUA RecName: Full=50S ribosomal protein L4
gi|118568682|gb|ABL03433.1| 50S ribosomal protein L4, RplD [Mycobacterium ulcerans Agy99]
Length = 224
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Query: 96 HQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
+DL I V + G +VL ++FDVP ++H+VV Q A +QGTHSTKT +VS
Sbjct: 9 QKDLEIQVKAPDGKVDGSVVLPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVS 68
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA 215
G G+KP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA
Sbjct: 69 GGGRKPYRQKGTGRARQGSTRTPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRA 128
Query: 216 AEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
G++ +L + PS TK + + + K+VL+ G +K + +NL V+
Sbjct: 129 RNGRIHAVTELVAGQTPS--TKSAKTFLATITDRKQVLVVIGRDDQTGVK-SVRNLPGVH 185
Query: 273 VL 274
+L
Sbjct: 186 IL 187
>gi|227550721|ref|ZP_03980770.1| 50S ribosomal protein L4 [Enterococcus faecium TX1330]
gi|257878726|ref|ZP_05658379.1| ribosomal protein L4 [Enterococcus faecium 1,230,933]
gi|257881367|ref|ZP_05661020.1| ribosomal protein L4 [Enterococcus faecium 1,231,502]
gi|257885635|ref|ZP_05665288.1| ribosomal protein L4 [Enterococcus faecium 1,231,501]
gi|257888020|ref|ZP_05667673.1| ribosomal protein L4 [Enterococcus faecium 1,141,733]
gi|257890585|ref|ZP_05670238.1| ribosomal protein L4 [Enterococcus faecium 1,231,410]
gi|257893175|ref|ZP_05672828.1| ribosomal protein L4 [Enterococcus faecium 1,231,408]
gi|257896361|ref|ZP_05676014.1| ribosomal protein L4 [Enterococcus faecium Com12]
gi|257899335|ref|ZP_05678988.1| ribosomal protein L4 [Enterococcus faecium Com15]
gi|261206994|ref|ZP_05921683.1| ribosomal protein L4 [Enterococcus faecium TC 6]
gi|289565371|ref|ZP_06445821.1| 50S ribosomal protein L4/L1 [Enterococcus faecium D344SRF]
gi|293379447|ref|ZP_06625591.1| ribosomal protein L4/L1 family protein [Enterococcus faecium PC4.1]
gi|293553880|ref|ZP_06674486.1| ribosomal protein L4/L1 family [Enterococcus faecium E1039]
gi|293562947|ref|ZP_06677414.1| ribosomal protein L4/L1 family [Enterococcus faecium E1162]
gi|293567930|ref|ZP_06679271.1| ribosomal protein L4/L1 family [Enterococcus faecium E1071]
gi|293570685|ref|ZP_06681735.1| ribosomal protein L4/L1 family [Enterococcus faecium E980]
gi|294615392|ref|ZP_06695265.1| ribosomal protein L4/L1 family [Enterococcus faecium E1636]
gi|294618319|ref|ZP_06697900.1| ribosomal protein L4/L1 family [Enterococcus faecium E1679]
gi|294621079|ref|ZP_06700270.1| ribosomal protein L4/L1 [Enterococcus faecium U0317]
gi|314937609|ref|ZP_07844935.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133a04]
gi|314942892|ref|ZP_07849705.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133C]
gi|314947972|ref|ZP_07851376.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0082]
gi|314950889|ref|ZP_07853958.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133A]
gi|314991463|ref|ZP_07856940.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133B]
gi|314995016|ref|ZP_07860136.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133a01]
gi|383327416|ref|YP_005353300.1| 50S ribosomal protein L4 [Enterococcus faecium Aus0004]
gi|389867241|ref|YP_006374664.1| 50S ribosomal protein L4 [Enterococcus faecium DO]
gi|406580823|ref|ZP_11056011.1| 50S ribosomal protein L4 [Enterococcus sp. GMD4E]
gi|406582819|ref|ZP_11057916.1| 50S ribosomal protein L4 [Enterococcus sp. GMD3E]
gi|406585073|ref|ZP_11060068.1| 50S ribosomal protein L4 [Enterococcus sp. GMD2E]
gi|406590652|ref|ZP_11065011.1| 50S ribosomal protein L4 [Enterococcus sp. GMD1E]
gi|410936018|ref|ZP_11367890.1| 50S ribosomal protein L4 [Enterococcus sp. GMD5E]
gi|415896774|ref|ZP_11550879.1| ribosomal protein L4/L1 family [Enterococcus faecium E4453]
gi|416132153|ref|ZP_11597843.1| ribosomal protein L4/L1 family [Enterococcus faecium E4452]
gi|424763838|ref|ZP_18191303.1| 50S ribosomal protein L4 [Enterococcus faecium TX1337RF]
gi|424791154|ref|ZP_18217635.1| 50S ribosomal protein L4 [Enterococcus faecium V689]
gi|424797492|ref|ZP_18223076.1| 50S ribosomal protein L4 [Enterococcus faecium S447]
gi|424828282|ref|ZP_18253018.1| 50S ribosomal protein L4 [Enterococcus faecium R501]
gi|424854885|ref|ZP_18279228.1| 50S ribosomal protein L4 [Enterococcus faecium R499]
gi|424869461|ref|ZP_18293165.1| 50S ribosomal protein L4 [Enterococcus faecium R497]
gi|424950249|ref|ZP_18365420.1| 50S ribosomal protein L4 [Enterococcus faecium R496]
gi|424954387|ref|ZP_18369289.1| 50S ribosomal protein L4 [Enterococcus faecium R494]
gi|424958476|ref|ZP_18373122.1| 50S ribosomal protein L4 [Enterococcus faecium R446]
gi|424959909|ref|ZP_18374466.1| 50S ribosomal protein L4 [Enterococcus faecium P1986]
gi|424965738|ref|ZP_18379655.1| 50S ribosomal protein L4 [Enterococcus faecium P1190]
gi|424969470|ref|ZP_18383040.1| 50S ribosomal protein L4 [Enterococcus faecium P1140]
gi|424970187|ref|ZP_18383716.1| 50S ribosomal protein L4 [Enterococcus faecium P1139]
gi|424974064|ref|ZP_18387316.1| 50S ribosomal protein L4 [Enterococcus faecium P1137]
gi|424976187|ref|ZP_18389293.1| 50S ribosomal protein L4 [Enterococcus faecium P1123]
gi|424981036|ref|ZP_18393789.1| 50S ribosomal protein L4 [Enterococcus faecium ERV99]
gi|424984549|ref|ZP_18397077.1| 50S ribosomal protein L4 [Enterococcus faecium ERV69]
gi|424987409|ref|ZP_18399784.1| 50S ribosomal protein L4 [Enterococcus faecium ERV38]
gi|424990860|ref|ZP_18403050.1| 50S ribosomal protein L4 [Enterococcus faecium ERV26]
gi|424994518|ref|ZP_18406453.1| 50S ribosomal protein L4 [Enterococcus faecium ERV168]
gi|424997347|ref|ZP_18409110.1| 50S ribosomal protein L4 [Enterococcus faecium ERV165]
gi|425001367|ref|ZP_18412886.1| 50S ribosomal protein L4 [Enterococcus faecium ERV161]
gi|425004033|ref|ZP_18415363.1| 50S ribosomal protein L4 [Enterococcus faecium ERV102]
gi|425006864|ref|ZP_18418019.1| 50S ribosomal protein L4 [Enterococcus faecium ERV1]
gi|425011010|ref|ZP_18421934.1| 50S ribosomal protein L4 [Enterococcus faecium E422]
gi|425014113|ref|ZP_18424808.1| 50S ribosomal protein L4 [Enterococcus faecium E417]
gi|425017911|ref|ZP_18428392.1| 50S ribosomal protein L4 [Enterococcus faecium C621]
gi|425020920|ref|ZP_18431207.1| 50S ribosomal protein L4 [Enterococcus faecium C497]
gi|425030537|ref|ZP_18435710.1| 50S ribosomal protein L4 [Enterococcus faecium C1904]
gi|425032675|ref|ZP_18437701.1| 50S ribosomal protein L4 [Enterococcus faecium 515]
gi|425035538|ref|ZP_18440373.1| 50S ribosomal protein L4 [Enterococcus faecium 514]
gi|425038344|ref|ZP_18442963.1| 50S ribosomal protein L4 [Enterococcus faecium 513]
gi|425041714|ref|ZP_18446097.1| 50S ribosomal protein L4 [Enterococcus faecium 511]
gi|425045422|ref|ZP_18449528.1| 50S ribosomal protein L4 [Enterococcus faecium 510]
gi|425048507|ref|ZP_18452407.1| 50S ribosomal protein L4 [Enterococcus faecium 509]
gi|425051599|ref|ZP_18455256.1| 50S ribosomal protein L4 [Enterococcus faecium 506]
gi|425054907|ref|ZP_18458408.1| 50S ribosomal protein L4 [Enterococcus faecium 505]
gi|425058266|ref|ZP_18461652.1| 50S ribosomal protein L4 [Enterococcus faecium 504]
gi|425060498|ref|ZP_18463792.1| 50S ribosomal protein L4 [Enterococcus faecium 503]
gi|427396938|ref|ZP_18889564.1| 50S ribosomal protein L4 [Enterococcus durans FB129-CNAB-4]
gi|430823272|ref|ZP_19441844.1| 50S ribosomal protein L4 [Enterococcus faecium E0120]
gi|430828772|ref|ZP_19446887.1| 50S ribosomal protein L4 [Enterococcus faecium E0269]
gi|430831821|ref|ZP_19449869.1| 50S ribosomal protein L4 [Enterococcus faecium E0333]
gi|430834875|ref|ZP_19452877.1| 50S ribosomal protein L4 [Enterococcus faecium E0679]
gi|430836367|ref|ZP_19454348.1| 50S ribosomal protein L4 [Enterococcus faecium E0680]
gi|430839295|ref|ZP_19457236.1| 50S ribosomal protein L4 [Enterococcus faecium E0688]
gi|430842491|ref|ZP_19460406.1| 50S ribosomal protein L4 [Enterococcus faecium E1007]
gi|430843054|ref|ZP_19460956.1| 50S ribosomal protein L4 [Enterococcus faecium E1050]
gi|430848220|ref|ZP_19466046.1| 50S ribosomal protein L4 [Enterococcus faecium E1133]
gi|430850698|ref|ZP_19468455.1| 50S ribosomal protein L4 [Enterococcus faecium E1185]
gi|430853289|ref|ZP_19471019.1| 50S ribosomal protein L4 [Enterococcus faecium E1258]
gi|430855749|ref|ZP_19473455.1| 50S ribosomal protein L4 [Enterococcus faecium E1392]
gi|430859010|ref|ZP_19476628.1| 50S ribosomal protein L4 [Enterococcus faecium E1552]
gi|430861232|ref|ZP_19478821.1| 50S ribosomal protein L4 [Enterococcus faecium E1573]
gi|430866305|ref|ZP_19481582.1| 50S ribosomal protein L4 [Enterococcus faecium E1574]
gi|430952275|ref|ZP_19486318.1| 50S ribosomal protein L4 [Enterococcus faecium E1576]
gi|430999158|ref|ZP_19488126.1| 50S ribosomal protein L4 [Enterococcus faecium E1578]
gi|431036415|ref|ZP_19492185.1| 50S ribosomal protein L4 [Enterococcus faecium E1590]
gi|431081707|ref|ZP_19495797.1| 50S ribosomal protein L4 [Enterococcus faecium E1604]
gi|431118100|ref|ZP_19498054.1| 50S ribosomal protein L4 [Enterococcus faecium E1613]
gi|431210723|ref|ZP_19501009.1| 50S ribosomal protein L4 [Enterococcus faecium E1620]
gi|431235004|ref|ZP_19503027.1| 50S ribosomal protein L4 [Enterococcus faecium E1622]
gi|431255612|ref|ZP_19504735.1| 50S ribosomal protein L4 [Enterococcus faecium E1623]
gi|431303542|ref|ZP_19508389.1| 50S ribosomal protein L4 [Enterococcus faecium E1626]
gi|431380514|ref|ZP_19510895.1| 50S ribosomal protein L4 [Enterococcus faecium E1627]
gi|431438045|ref|ZP_19513208.1| 50S ribosomal protein L4 [Enterococcus faecium E1630]
gi|431506897|ref|ZP_19515723.1| 50S ribosomal protein L4 [Enterococcus faecium E1634]
gi|431545075|ref|ZP_19518716.1| 50S ribosomal protein L4 [Enterococcus faecium E1731]
gi|431592335|ref|ZP_19521571.1| 50S ribosomal protein L4 [Enterococcus faecium E1861]
gi|431695862|ref|ZP_19524756.1| 50S ribosomal protein L4 [Enterococcus faecium E1904]
gi|431739069|ref|ZP_19528009.1| 50S ribosomal protein L4 [Enterococcus faecium E1972]
gi|431740650|ref|ZP_19529561.1| 50S ribosomal protein L4 [Enterococcus faecium E2039]
gi|431743966|ref|ZP_19532839.1| 50S ribosomal protein L4 [Enterococcus faecium E2071]
gi|431747237|ref|ZP_19536036.1| 50S ribosomal protein L4 [Enterococcus faecium E2134]
gi|431749425|ref|ZP_19538166.1| 50S ribosomal protein L4 [Enterococcus faecium E2297]
gi|431753116|ref|ZP_19541793.1| 50S ribosomal protein L4 [Enterococcus faecium E2620]
gi|431755938|ref|ZP_19544580.1| 50S ribosomal protein L4 [Enterococcus faecium E2883]
gi|431757942|ref|ZP_19546571.1| 50S ribosomal protein L4 [Enterococcus faecium E3083]
gi|431760074|ref|ZP_19548678.1| 50S ribosomal protein L4 [Enterococcus faecium E3346]
gi|431763208|ref|ZP_19551761.1| 50S ribosomal protein L4 [Enterococcus faecium E3548]
gi|431764905|ref|ZP_19553431.1| 50S ribosomal protein L4 [Enterococcus faecium E4215]
gi|431768073|ref|ZP_19556514.1| 50S ribosomal protein L4 [Enterococcus faecium E1321]
gi|431769422|ref|ZP_19557832.1| 50S ribosomal protein L4 [Enterococcus faecium E1644]
gi|431774573|ref|ZP_19562880.1| 50S ribosomal protein L4 [Enterococcus faecium E2369]
gi|431776377|ref|ZP_19564639.1| 50S ribosomal protein L4 [Enterococcus faecium E2560]
gi|431779701|ref|ZP_19567893.1| 50S ribosomal protein L4 [Enterococcus faecium E4389]
gi|431782496|ref|ZP_19570629.1| 50S ribosomal protein L4 [Enterococcus faecium E6012]
gi|431784317|ref|ZP_19572359.1| 50S ribosomal protein L4 [Enterococcus faecium E6045]
gi|447911578|ref|YP_007392990.1| LSU ribosomal protein L4p (L1e) [Enterococcus faecium NRRL B-2354]
gi|227180182|gb|EEI61154.1| 50S ribosomal protein L4 [Enterococcus faecium TX1330]
gi|257812954|gb|EEV41712.1| ribosomal protein L4 [Enterococcus faecium 1,230,933]
gi|257817025|gb|EEV44353.1| ribosomal protein L4 [Enterococcus faecium 1,231,502]
gi|257821491|gb|EEV48621.1| ribosomal protein L4 [Enterococcus faecium 1,231,501]
gi|257824074|gb|EEV51006.1| ribosomal protein L4 [Enterococcus faecium 1,141,733]
gi|257826945|gb|EEV53571.1| ribosomal protein L4 [Enterococcus faecium 1,231,410]
gi|257829554|gb|EEV56161.1| ribosomal protein L4 [Enterococcus faecium 1,231,408]
gi|257832926|gb|EEV59347.1| ribosomal protein L4 [Enterococcus faecium Com12]
gi|257837247|gb|EEV62321.1| ribosomal protein L4 [Enterococcus faecium Com15]
gi|260078622|gb|EEW66324.1| ribosomal protein L4 [Enterococcus faecium TC 6]
gi|289162861|gb|EFD10711.1| 50S ribosomal protein L4/L1 [Enterococcus faecium D344SRF]
gi|291291686|gb|ADD91677.1| 50S ribosomal protein L4 [Enterococcus faecium]
gi|291589515|gb|EFF21322.1| ribosomal protein L4/L1 family [Enterococcus faecium E1071]
gi|291591766|gb|EFF23402.1| ribosomal protein L4/L1 family [Enterococcus faecium E1636]
gi|291595413|gb|EFF26725.1| ribosomal protein L4/L1 family [Enterococcus faecium E1679]
gi|291599315|gb|EFF30341.1| ribosomal protein L4/L1 [Enterococcus faecium U0317]
gi|291601932|gb|EFF32178.1| ribosomal protein L4/L1 family [Enterococcus faecium E1039]
gi|291605073|gb|EFF34540.1| ribosomal protein L4/L1 family [Enterococcus faecium E1162]
gi|291609157|gb|EFF38429.1| ribosomal protein L4/L1 family [Enterococcus faecium E980]
gi|292641970|gb|EFF60136.1| ribosomal protein L4/L1 family protein [Enterococcus faecium PC4.1]
gi|313590742|gb|EFR69587.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133a01]
gi|313593943|gb|EFR72788.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133B]
gi|313596898|gb|EFR75743.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133A]
gi|313598364|gb|EFR77209.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133C]
gi|313642986|gb|EFS07566.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0133a04]
gi|313645570|gb|EFS10150.1| ribosomal protein L4/L1 family protein [Enterococcus faecium
TX0082]
gi|364090882|gb|EHM33410.1| ribosomal protein L4/L1 family [Enterococcus faecium E4453]
gi|364093419|gb|EHM35693.1| ribosomal protein L4/L1 family [Enterococcus faecium E4452]
gi|378937110|gb|AFC62182.1| 50S ribosomal protein L4 [Enterococcus faecium Aus0004]
gi|388532490|gb|AFK57682.1| ribosomal protein L4 [Enterococcus faecium DO]
gi|402422014|gb|EJV54257.1| 50S ribosomal protein L4 [Enterococcus faecium TX1337RF]
gi|402919912|gb|EJX40471.1| 50S ribosomal protein L4 [Enterococcus faecium V689]
gi|402921048|gb|EJX41518.1| 50S ribosomal protein L4 [Enterococcus faecium S447]
gi|402922816|gb|EJX43163.1| 50S ribosomal protein L4 [Enterococcus faecium R501]
gi|402932214|gb|EJX51746.1| 50S ribosomal protein L4 [Enterococcus faecium R499]
gi|402933538|gb|EJX52964.1| 50S ribosomal protein L4 [Enterococcus faecium R496]
gi|402935564|gb|EJX54807.1| 50S ribosomal protein L4 [Enterococcus faecium R497]
gi|402937021|gb|EJX56165.1| 50S ribosomal protein L4 [Enterococcus faecium R494]
gi|402940102|gb|EJX58959.1| 50S ribosomal protein L4 [Enterococcus faecium R446]
gi|402942959|gb|EJX61500.1| 50S ribosomal protein L4 [Enterococcus faecium P1190]
gi|402948440|gb|EJX66577.1| 50S ribosomal protein L4 [Enterococcus faecium P1140]
gi|402949393|gb|EJX67459.1| 50S ribosomal protein L4 [Enterococcus faecium P1986]
gi|402957411|gb|EJX74802.1| 50S ribosomal protein L4 [Enterococcus faecium P1137]
gi|402962390|gb|EJX79332.1| 50S ribosomal protein L4 [Enterococcus faecium P1139]
gi|402964650|gb|EJX81418.1| 50S ribosomal protein L4 [Enterococcus faecium ERV99]
gi|402968496|gb|EJX84975.1| 50S ribosomal protein L4 [Enterococcus faecium ERV69]
gi|402970313|gb|EJX86668.1| 50S ribosomal protein L4 [Enterococcus faecium P1123]
gi|402974401|gb|EJX90453.1| 50S ribosomal protein L4 [Enterococcus faecium ERV38]
gi|402978442|gb|EJX94181.1| 50S ribosomal protein L4 [Enterococcus faecium ERV26]
gi|402979945|gb|EJX95584.1| 50S ribosomal protein L4 [Enterococcus faecium ERV168]
gi|402986461|gb|EJY01584.1| 50S ribosomal protein L4 [Enterococcus faecium ERV165]
gi|402986924|gb|EJY02023.1| 50S ribosomal protein L4 [Enterococcus faecium ERV161]
gi|402990686|gb|EJY05551.1| 50S ribosomal protein L4 [Enterococcus faecium ERV102]
gi|402996196|gb|EJY10596.1| 50S ribosomal protein L4 [Enterococcus faecium ERV1]
gi|402998217|gb|EJY12482.1| 50S ribosomal protein L4 [Enterococcus faecium E422]
gi|402999463|gb|EJY13650.1| 50S ribosomal protein L4 [Enterococcus faecium E417]
gi|403002770|gb|EJY16716.1| 50S ribosomal protein L4 [Enterococcus faecium C1904]
gi|403003429|gb|EJY17329.1| 50S ribosomal protein L4 [Enterococcus faecium C621]
gi|403008098|gb|EJY21627.1| 50S ribosomal protein L4 [Enterococcus faecium C497]
gi|403012432|gb|EJY25659.1| 50S ribosomal protein L4 [Enterococcus faecium 515]
gi|403017792|gb|EJY30516.1| 50S ribosomal protein L4 [Enterococcus faecium 514]
gi|403019710|gb|EJY32293.1| 50S ribosomal protein L4 [Enterococcus faecium 513]
gi|403025495|gb|EJY37573.1| 50S ribosomal protein L4 [Enterococcus faecium 511]
gi|403027115|gb|EJY39027.1| 50S ribosomal protein L4 [Enterococcus faecium 510]
gi|403030438|gb|EJY42121.1| 50S ribosomal protein L4 [Enterococcus faecium 509]
gi|403035041|gb|EJY46449.1| 50S ribosomal protein L4 [Enterococcus faecium 505]
gi|403037219|gb|EJY48519.1| 50S ribosomal protein L4 [Enterococcus faecium 506]
gi|403038796|gb|EJY49993.1| 50S ribosomal protein L4 [Enterococcus faecium 504]
gi|403042542|gb|EJY53489.1| 50S ribosomal protein L4 [Enterococcus faecium 503]
gi|404453454|gb|EKA00510.1| 50S ribosomal protein L4 [Enterococcus sp. GMD4E]
gi|404457556|gb|EKA04093.1| 50S ribosomal protein L4 [Enterococcus sp. GMD3E]
gi|404463055|gb|EKA08753.1| 50S ribosomal protein L4 [Enterococcus sp. GMD2E]
gi|404469026|gb|EKA13865.1| 50S ribosomal protein L4 [Enterococcus sp. GMD1E]
gi|410735609|gb|EKQ77518.1| 50S ribosomal protein L4 [Enterococcus sp. GMD5E]
gi|425722685|gb|EKU85579.1| 50S ribosomal protein L4 [Enterococcus durans FB129-CNAB-4]
gi|430442370|gb|ELA52415.1| 50S ribosomal protein L4 [Enterococcus faecium E0120]
gi|430480462|gb|ELA57636.1| 50S ribosomal protein L4 [Enterococcus faecium E0333]
gi|430482756|gb|ELA59857.1| 50S ribosomal protein L4 [Enterococcus faecium E0269]
gi|430484944|gb|ELA61891.1| 50S ribosomal protein L4 [Enterococcus faecium E0679]
gi|430488494|gb|ELA65165.1| 50S ribosomal protein L4 [Enterococcus faecium E0680]
gi|430490753|gb|ELA67249.1| 50S ribosomal protein L4 [Enterococcus faecium E0688]
gi|430493572|gb|ELA69875.1| 50S ribosomal protein L4 [Enterococcus faecium E1007]
gi|430498108|gb|ELA74116.1| 50S ribosomal protein L4 [Enterococcus faecium E1050]
gi|430535057|gb|ELA75480.1| 50S ribosomal protein L4 [Enterococcus faecium E1185]
gi|430535563|gb|ELA75963.1| 50S ribosomal protein L4 [Enterococcus faecium E1133]
gi|430541111|gb|ELA81288.1| 50S ribosomal protein L4 [Enterococcus faecium E1258]
gi|430544529|gb|ELA84558.1| 50S ribosomal protein L4 [Enterococcus faecium E1552]
gi|430546291|gb|ELA86253.1| 50S ribosomal protein L4 [Enterococcus faecium E1392]
gi|430550265|gb|ELA90062.1| 50S ribosomal protein L4 [Enterococcus faecium E1573]
gi|430551533|gb|ELA91284.1| 50S ribosomal protein L4 [Enterococcus faecium E1574]
gi|430557410|gb|ELA96869.1| 50S ribosomal protein L4 [Enterococcus faecium E1576]
gi|430562955|gb|ELB02186.1| 50S ribosomal protein L4 [Enterococcus faecium E1590]
gi|430563265|gb|ELB02494.1| 50S ribosomal protein L4 [Enterococcus faecium E1578]
gi|430565639|gb|ELB04785.1| 50S ribosomal protein L4 [Enterococcus faecium E1604]
gi|430568057|gb|ELB07114.1| 50S ribosomal protein L4 [Enterococcus faecium E1613]
gi|430570582|gb|ELB09531.1| 50S ribosomal protein L4 [Enterococcus faecium E1620]
gi|430572864|gb|ELB11700.1| 50S ribosomal protein L4 [Enterococcus faecium E1622]
gi|430577810|gb|ELB16390.1| 50S ribosomal protein L4 [Enterococcus faecium E1623]
gi|430580183|gb|ELB18663.1| 50S ribosomal protein L4 [Enterococcus faecium E1626]
gi|430582382|gb|ELB20809.1| 50S ribosomal protein L4 [Enterococcus faecium E1627]
gi|430586880|gb|ELB25122.1| 50S ribosomal protein L4 [Enterococcus faecium E1630]
gi|430587284|gb|ELB25517.1| 50S ribosomal protein L4 [Enterococcus faecium E1634]
gi|430591960|gb|ELB29987.1| 50S ribosomal protein L4 [Enterococcus faecium E1861]
gi|430592123|gb|ELB30145.1| 50S ribosomal protein L4 [Enterococcus faecium E1731]
gi|430596612|gb|ELB34436.1| 50S ribosomal protein L4 [Enterococcus faecium E1972]
gi|430597815|gb|ELB35597.1| 50S ribosomal protein L4 [Enterococcus faecium E1904]
gi|430602733|gb|ELB40283.1| 50S ribosomal protein L4 [Enterococcus faecium E2039]
gi|430606029|gb|ELB43401.1| 50S ribosomal protein L4 [Enterococcus faecium E2071]
gi|430606766|gb|ELB44104.1| 50S ribosomal protein L4 [Enterococcus faecium E2134]
gi|430611554|gb|ELB48635.1| 50S ribosomal protein L4 [Enterococcus faecium E2297]
gi|430612621|gb|ELB49656.1| 50S ribosomal protein L4 [Enterococcus faecium E2620]
gi|430616053|gb|ELB52978.1| 50S ribosomal protein L4 [Enterococcus faecium E2883]
gi|430618447|gb|ELB55294.1| 50S ribosomal protein L4 [Enterococcus faecium E3083]
gi|430622902|gb|ELB59612.1| 50S ribosomal protein L4 [Enterococcus faecium E3548]
gi|430625343|gb|ELB61983.1| 50S ribosomal protein L4 [Enterococcus faecium E3346]
gi|430629676|gb|ELB66065.1| 50S ribosomal protein L4 [Enterococcus faecium E4215]
gi|430629802|gb|ELB66190.1| 50S ribosomal protein L4 [Enterococcus faecium E1321]
gi|430633978|gb|ELB70123.1| 50S ribosomal protein L4 [Enterococcus faecium E2369]
gi|430636997|gb|ELB73041.1| 50S ribosomal protein L4 [Enterococcus faecium E1644]
gi|430640928|gb|ELB76749.1| 50S ribosomal protein L4 [Enterococcus faecium E2560]
gi|430641463|gb|ELB77265.1| 50S ribosomal protein L4 [Enterococcus faecium E4389]
gi|430647133|gb|ELB82581.1| 50S ribosomal protein L4 [Enterococcus faecium E6012]
gi|430649891|gb|ELB85258.1| 50S ribosomal protein L4 [Enterococcus faecium E6045]
gi|445187287|gb|AGE28929.1| LSU ribosomal protein L4p (L1e) [Enterococcus faecium NRRL B-2354]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 103/180 (57%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + + +++ + Q A +QGTH+ K S V G
Sbjct: 1 MPNVALFKQDGSQNGEITLNEEIFGIEPNESVVYDAIVMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ KL KKVRRL +K LS + AE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAMKSVLSEKVAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPS 276
L+ E L + KTK + KVL+ + G ++ L+ +NL V+V+ S
Sbjct: 121 NNLVAIEGLNFDAPKTKEFKQVLANLSIDSKVLVVLEKG--NDFAALSARNLPNVSVVTS 178
>gi|392958544|ref|ZP_10324053.1| 50S ribosomal protein L4 [Bacillus macauensis ZFHKF-1]
gi|391875445|gb|EIT84056.1| 50S ribosomal protein L4 [Bacillus macauensis ZFHKF-1]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 4/177 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L VF + K+++ V Q A +QG H K SEV+G
Sbjct: 1 MPKVAIFKQDGTQAGDLELNASVFGIEPNKNVLFDAVVMQQASLRQGNHDVKNRSEVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPW+QKGTGRAR G++R PQ+ GG + GP PRS++ KL KKVRRL +K ALS++ +
Sbjct: 61 GRKPWKQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSSKVID 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L+V + L + KTK + + +K L+ G +E + L+ +N+ V V+
Sbjct: 121 NDLVVLDALSFEAPKTKDMKKVLENLSADRKALVVTGD-FNEFVALSARNIPGVTVV 176
>gi|358051335|ref|ZP_09145545.1| 50S ribosomal protein L4 [Staphylococcus simiae CCM 7213]
gi|357259155|gb|EHJ09002.1| 50S ribosomal protein L4 [Staphylococcus simiae CCM 7213]
Length = 207
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDSVFAIEPNNSVLFEAITLQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKENSLTIVDAFNFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNV 273
KTK N +E KKVL+ D ++ ++L+ +N+ V V
Sbjct: 135 KTKEFKNVLTTLEQPKKVLVVTDNEDVN--VELSARNIPNVQV 175
>gi|418009015|ref|ZP_12648859.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UW4]
gi|410544928|gb|EKQ19238.1| LSU ribosomal protein L4p (L1e) [Lactobacillus casei UW4]
Length = 207
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q A +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGKVELNDAIWAVEPNENVVFDAVVMQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + + L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDSDLVVVDGLNFD 132
Query: 230 SHKTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNVLPS 276
+ KTK + ++ + K L+ +GG +E A +NL V V+P+
Sbjct: 133 APKTKAFATVLDGLKVSDKALVVLEGG--NEVAAKAARNLPNVKVVPA 178
>gi|49484465|ref|YP_041689.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257423734|ref|ZP_05600163.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257426412|ref|ZP_05602814.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257429051|ref|ZP_05605438.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
68-397]
gi|257434658|ref|ZP_05610709.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
M876]
gi|282902152|ref|ZP_06310045.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus C160]
gi|282906592|ref|ZP_06314440.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282909562|ref|ZP_06317373.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911809|ref|ZP_06319605.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282915098|ref|ZP_06322875.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899]
gi|282920824|ref|ZP_06328542.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
C427]
gi|282925729|ref|ZP_06333377.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
C101]
gi|283959027|ref|ZP_06376468.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293497502|ref|ZP_06665356.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
58-424]
gi|293511077|ref|ZP_06669774.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
M809]
gi|293549683|ref|ZP_06672355.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015]
gi|295428832|ref|ZP_06821456.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297589682|ref|ZP_06948323.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MN8]
gi|384866835|ref|YP_005747031.1| 50S ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus TCH60]
gi|415684499|ref|ZP_11449608.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS00]
gi|417888305|ref|ZP_12532419.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21195]
gi|418564038|ref|ZP_13128463.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21264]
gi|418580210|ref|ZP_13144296.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418595662|ref|ZP_13159260.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21342]
gi|418601385|ref|ZP_13164821.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21345]
gi|418890049|ref|ZP_13444175.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418895900|ref|ZP_13449978.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418898837|ref|ZP_13452901.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418907220|ref|ZP_13461238.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG149]
gi|418915376|ref|ZP_13469341.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418921117|ref|ZP_13475041.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418983198|ref|ZP_13530900.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418984026|ref|ZP_13531721.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|56749402|sp|Q6GEI4.1|RL4_STAAR RecName: Full=50S ribosomal protein L4
gi|49242594|emb|CAG41315.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257272752|gb|EEV04854.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257276043|gb|EEV07494.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279532|gb|EEV10119.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
68-397]
gi|257285254|gb|EEV15370.1| LSU ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
M876]
gi|282312558|gb|EFB42962.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
C101]
gi|282315239|gb|EFB45623.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
C427]
gi|282320819|gb|EFB51153.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M899]
gi|282323505|gb|EFB53821.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326541|gb|EFB56843.1| ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282329491|gb|EFB59012.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282596611|gb|EFC01570.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus C160]
gi|283788619|gb|EFC27446.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290918730|gb|EFD95806.1| ribosomal protein L4 [Staphylococcus aureus subsp. aureus M1015]
gi|291096433|gb|EFE26691.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
58-424]
gi|291466064|gb|EFF08593.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
M809]
gi|295127181|gb|EFG56823.1| 50S ribosomal protein L4/L1 [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297578193|gb|EFH96906.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus MN8]
gi|312437340|gb|ADQ76411.1| ribosomal protein L4/L1 family protein [Staphylococcus aureus
subsp. aureus TCH60]
gi|315193501|gb|EFU23897.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CGS00]
gi|341856138|gb|EGS96981.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21195]
gi|371977138|gb|EHO94416.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21264]
gi|374398851|gb|EHQ70005.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21345]
gi|374400763|gb|EHQ71869.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
21342]
gi|377702076|gb|EHT26401.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377707622|gb|EHT31914.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377709625|gb|EHT33877.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377713402|gb|EHT37610.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377737220|gb|EHT61230.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377739240|gb|EHT63246.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377753203|gb|EHT77120.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377760050|gb|EHT83929.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIG149]
gi|377763769|gb|EHT87623.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 207
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 86/141 (60%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N + +E KKVL+
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVV 155
>gi|255526579|ref|ZP_05393486.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7]
gi|296187267|ref|ZP_06855663.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans
P7]
gi|255509687|gb|EET86020.1| ribosomal protein L4/L1e [Clostridium carboxidivorans P7]
gi|296048138|gb|EFG87576.1| ribosomal protein L4/L1 family protein [Clostridium carboxidivorans
P7]
Length = 206
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L+ +VF V + + +H+VV LA ++QGT S KT SEVSG
Sbjct: 1 MPTVGLFNKEGKKVGDVQLSDNVFGVEVNQYALHQVVVALLANKRQGTQSAKTRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + KPR + + K +RR+ +K AL+++ +
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIHGGMVFAVKPRDYRTSVPKSMRRVAMKSALTSKVND 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+++V E LE+ + KTK +V + + N KK L+ K A +N+ V +LP
Sbjct: 121 EQIVVLESLELEAPKTKEVVKMLDAL-NAKKTLIVTSESNENAYKSA-RNIQGVEILP 176
>gi|183981054|ref|YP_001849345.1| 50S ribosomal protein L4 [Mycobacterium marinum M]
gi|226730696|sp|B2HSN2.1|RL4_MYCMM RecName: Full=50S ribosomal protein L4
gi|183174380|gb|ACC39490.1| 50S ribosomal protein L4, RplD [Mycobacterium marinum M]
Length = 224
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 6/182 (3%)
Query: 96 HQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVS 155
+DL I V + G + L ++FDVP ++H+VV Q A +QGTHSTKT +VS
Sbjct: 9 QKDLEIQVKTPDGKVDGSVALPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGDVS 68
Query: 156 GTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARA 215
G G+KP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA
Sbjct: 69 GGGRKPYRQKGTGRARQGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRA 128
Query: 216 AEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
G++ +L + PS TK + + + K+VL+ G +K + +NL V+
Sbjct: 129 RNGRIHAVTELVAGQTPS--TKSAKTFLATITDRKQVLVVIGRDDQTGVK-SVRNLPGVH 185
Query: 273 VL 274
+L
Sbjct: 186 IL 187
>gi|348550164|ref|XP_003460902.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Cavia
porcellus]
Length = 296
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 121/233 (51%), Gaps = 12/233 (5%)
Query: 53 GLSFLAS---RKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNE 109
GLS LA R + P+ S GA + +L++ L Q + + + E
Sbjct: 20 GLSSLAEEAVRPVKESEQEPEPSAGA--QEPVLRRCELPVPAHRRPVQAWIESLRGYEQE 77
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
G L DVF R D++H+V WQ ++ TKT +EV G G+KPW+QKG+GR
Sbjct: 78 RVGLAELHPDVFATAPRLDVLHQVAIWQKNFKRISYAKTKTRAEVRGGGRKPWQQKGSGR 137
Query: 170 ARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
ARHG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + A+ L V + LE+
Sbjct: 138 ARHGSIRSPIWRGGGIAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHVVDSLEL 197
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSV 277
P+ +++ + VLL D HE + AT L +N++P+V
Sbjct: 198 PTSDPQYLTELAHYRRWGDSVLLVD--LTHEGMPRNIVEATSRLKTINLIPAV 248
>gi|90962405|ref|YP_536321.1| 50S ribosomal protein L4 [Lactobacillus salivarius UCC118]
gi|227891545|ref|ZP_04009350.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741]
gi|301300211|ref|ZP_07206423.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a]
gi|385840909|ref|YP_005864233.1| 50S ribosomal protein L4 [Lactobacillus salivarius CECT 5713]
gi|417809710|ref|ZP_12456391.1| 50S ribosomal protein L4 [Lactobacillus salivarius GJ-24]
gi|418960953|ref|ZP_13512840.1| 50S ribosomal protein L4 [Lactobacillus salivarius SMXD51]
gi|122448605|sp|Q1WS91.1|RL4_LACS1 RecName: Full=50S ribosomal protein L4
gi|90821599|gb|ABE00238.1| LSU ribosomal protein L1E [Lactobacillus salivarius UCC118]
gi|227866692|gb|EEJ74113.1| 50S ribosomal protein L4 [Lactobacillus salivarius ATCC 11741]
gi|300215030|gb|ADJ79446.1| 50S ribosomal protein L4 [Lactobacillus salivarius CECT 5713]
gi|300852152|gb|EFK79824.1| 50S ribosomal protein L4 [Lactobacillus salivarius ACS-116-V-Col5a]
gi|335350634|gb|EGM52130.1| 50S ribosomal protein L4 [Lactobacillus salivarius GJ-24]
gi|380344620|gb|EIA32966.1| 50S ribosomal protein L4 [Lactobacillus salivarius SMXD51]
Length = 207
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 100/181 (55%), Gaps = 8/181 (4%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L +F + +++ V Q A +QGTH+ K S V G
Sbjct: 1 MPTVALFKQDGNQNGEVQLNEAIFGIEPNNNVVFDAVIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ GG T+ GP PRS++ KL +KVRRL +K LS + A+
Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + L + KTK + + KVL L D LA +NL V V+P
Sbjct: 121 ESLVVVDALNFDAPKTKAFAEVLSNLNVNSKVLVVLEDDNTTAA---LAARNLKNVTVIP 177
Query: 276 S 276
+
Sbjct: 178 A 178
>gi|110678719|ref|YP_681726.1| 50S ribosomal protein L4 [Roseobacter denitrificans OCh 114]
gi|123172736|sp|Q16AF3.1|RL4_ROSDO RecName: Full=50S ribosomal protein L4
gi|109454835|gb|ABG31040.1| ribosomal protein L4 [Roseobacter denitrificans OCh 114]
Length = 205
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + R DI+HRVVRWQ Q GTH KT SEV+ + KK +RQKGTG ARHG P
Sbjct: 22 LFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYSTKKIYRQKGTGGARHGARSAPI 81
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
FRGG GPK RSH +L KK R+LGL ALSA+ G+L++ +++ KT +
Sbjct: 82 FRGGGVYKGPKVRSHGHELTKKFRKLGLCHALSAKMKAGELVIIDEVS-SDGKTAALAKQ 140
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ K+ L+ DG ++E A +N+ +++LP++
Sbjct: 141 VANL-GWKRALIIDGATVNETFAQAARNIDGLDILPTM 177
>gi|320548054|ref|ZP_08042334.1| 50S ribosomal protein L4 [Streptococcus equinus ATCC 9812]
gi|320447296|gb|EFW88059.1| 50S ribosomal protein L4 [Streptococcus equinus ATCC 9812]
Length = 207
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 97/169 (57%), Gaps = 9/169 (5%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT N
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEEKFVAVESLSFAAPKTAEFANV 142
Query: 240 YNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 143 LSALNVDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|110803426|ref|YP_699662.1| 50S ribosomal protein L4 [Clostridium perfringens SM101]
gi|122956495|sp|Q0SQE5.1|RL4_CLOPS RecName: Full=50S ribosomal protein L4
gi|110683927|gb|ABG87297.1| 50S ribosomal protein L4 [Clostridium perfringens SM101]
Length = 204
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 7/178 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF V + K +H+VV QLA ++QGT S KT SEV G
Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +R++ + AL+++ A+
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V EDL + KTK V N E K +++ ++E + + +N+ V V+P
Sbjct: 121 --MVVLEDLNFEAPKTKEAVKMLNAFEAKKTLIIT--AEVNENVYKSARNIEGVTVMP 174
>gi|395205593|ref|ZP_10396224.1| ribosomal protein L4/L1 family protein [Propionibacterium humerusii
P08]
gi|422441402|ref|ZP_16518212.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL037PA3]
gi|422472412|ref|ZP_16548900.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL037PA2]
gi|422572102|ref|ZP_16647673.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL044PA1]
gi|313836022|gb|EFS73736.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL037PA2]
gi|314929561|gb|EFS93392.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL044PA1]
gi|314970554|gb|EFT14652.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL037PA3]
gi|328906229|gb|EGG26004.1| ribosomal protein L4/L1 family protein [Propionibacterium humerusii
P08]
Length = 301
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 106/183 (57%), Gaps = 6/183 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GDVFDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDVFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ + L + PS K V + + KVL+ E L+ +NL V
Sbjct: 121 ARDNRIFIVTSLVDGDKPSTKQAKAV--LSGLAELSKVLVVLARS-DEVDWLSVRNLSEV 177
Query: 272 NVL 274
+VL
Sbjct: 178 HVL 180
>gi|229489366|ref|ZP_04383229.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis
SK121]
gi|453068364|ref|ZP_21971643.1| 50S ribosomal protein L4 [Rhodococcus qingshengii BKS 20-40]
gi|226184457|dbj|BAH32561.1| 50S ribosomal protein L4 [Rhodococcus erythropolis PR4]
gi|229323463|gb|EEN89221.1| ribosomal protein L4/L1 family protein [Rhodococcus erythropolis
SK121]
gi|452766014|gb|EME24265.1| 50S ribosomal protein L4 [Rhodococcus qingshengii BKS 20-40]
Length = 224
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/146 (45%), Positives = 94/146 (64%), Gaps = 5/146 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTHSTKT +V G GKKP+RQKGTGRAR
Sbjct: 21 GTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHSTKTRGDVRGGGKKPYRQKGTGRAR 80
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 81 QGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 140
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDG 254
PS TK + + ++ + KK+LL G
Sbjct: 141 PS--TKGAIAFLGEISDRKKLLLVVG 164
>gi|452994642|emb|CCQ93749.1| ribosomal protein L4 [Clostridium ultunense Esp]
Length = 207
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 104/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P +N++ G M L +VF + ++H+ V A +QGTH+T+ + V G
Sbjct: 1 MPKVTVYNQNGQTVGEMDLKDEVFGIEPNPHVLHQAVVLYQASLRQGTHATRNRALVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ GG + GP PRS+ + KK+RRL ++ A S++ E
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWVGGGVVFGPTPRSYTFTMPKKMRRLAIRSAFSSKVKE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+LLV + L + KTK V + +K L+ G +E L L+ +N+ V ++P+
Sbjct: 121 NELLVLDTLSLEKPKTKEFVQILKNLNVNRKALVIIGEK-NETLSLSARNIPGVKLVPA 178
>gi|389577501|ref|ZP_10167529.1| 50S ribosomal protein L4, bacterial/organelle [Eubacterium
cellulosolvens 6]
gi|389312986|gb|EIM57919.1| 50S ribosomal protein L4, bacterial/organelle [Eubacterium
cellulosolvens 6]
Length = 206
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 101/171 (59%), Gaps = 2/171 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L+ VF V I+++++H+ V QLA +QGT KT SEV G G+K
Sbjct: 4 VSVYNMEGAEVGKMELSDAVFGVEIKENLVHQAVVLQLANNRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+N+K ++ LK L+++ E K
Sbjct: 64 PWRQKGTGHARQGSTRAPQWTGGGVVFAPTPRDYSFKMNRKEKQAALKSVLTSKVQENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
LV ++L+ + KTK + + ++ K +++ G + L+ +NL V
Sbjct: 124 LVLDELKFDAPKTKEMKKVIDALKVEKALVIV--GKDSDNAVLSARNLEGV 172
>gi|335356557|ref|ZP_08548427.1| 50S ribosomal protein L4 [Lactobacillus animalis KCTC 3501]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN+D G + L VF + + ++ V Q A +QGTH+ K S V G
Sbjct: 1 MPTVALFNQDGTQNGDVQLNDAVFGIEPNESVVFDAVIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG T+ GP PRS+A KL +KVRRL ++ LS + +
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPRKVRRLAIRSVLSQKVLD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
L+V E L + KTK N ++ KVL+
Sbjct: 121 NSLVVVETLNFDAPKTKAFAEVLNNLDVKSKVLVV 155
>gi|306832548|ref|ZP_07465688.1| ribosomal protein L4/L1 family protein [Streptococcus bovis ATCC
700338]
gi|336063414|ref|YP_004558273.1| 50S ribosomal protein L4 [Streptococcus pasteurianus ATCC 43144]
gi|304425306|gb|EFM28432.1| ribosomal protein L4/L1 family protein [Streptococcus bovis ATCC
700338]
gi|334281614|dbj|BAK29187.1| 50S ribosomal protein L4 [Streptococcus pasteurianus ATCC 43144]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 97/169 (57%), Gaps = 9/169 (5%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT N
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVESLSFTAPKTAEFANV 142
Query: 240 YNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 143 LSALNVDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|55821904|ref|YP_140346.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMG 18311]
gi|55823820|ref|YP_142261.1| 50S ribosomal protein L4 [Streptococcus thermophilus CNRZ1066]
gi|116628597|ref|YP_821216.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMD-9]
gi|228478067|ref|ZP_04062678.1| ribosomal protein L4/L1 family protein [Streptococcus salivarius
SK126]
gi|322515868|ref|ZP_08068810.1| 50S ribosomal protein L4 [Streptococcus vestibularis ATCC 49124]
gi|340399804|ref|YP_004728829.1| 50S ribosomal protein L4 [Streptococcus salivarius CCHSS3]
gi|386087545|ref|YP_006003419.1| 50S ribosomal protein L4 [Streptococcus thermophilus ND03]
gi|386345660|ref|YP_006041824.1| 50S ribosomal protein L4 [Streptococcus thermophilus JIM 8232]
gi|387760396|ref|YP_006067373.1| 50S ribosomal protein L4 [Streptococcus salivarius 57.I]
gi|387910636|ref|YP_006340942.1| 50S ribosomal protein L4 [Streptococcus thermophilus MN-ZLW-002]
gi|418018805|ref|ZP_12658360.1| 50S ribosomal protein L4 [Streptococcus salivarius M18]
gi|421453362|ref|ZP_15902718.1| LSU ribosomal protein L1E (L4P) [Streptococcus salivarius K12]
gi|445383355|ref|ZP_21427465.1| 50S ribosomal protein L4 [Streptococcus thermophilus MTCC 5460]
gi|445396102|ref|ZP_21429198.1| 50S ribosomal protein L4 [Streptococcus thermophilus MTCC 5461]
gi|81558868|sp|Q5LXR2.1|RL4_STRT1 RecName: Full=50S ribosomal protein L4
gi|81560055|sp|Q5M2B4.1|RL4_STRT2 RecName: Full=50S ribosomal protein L4
gi|122266809|sp|Q03IF2.1|RL4_STRTD RecName: Full=50S ribosomal protein L4
gi|55737889|gb|AAV61531.1| 50S ribosomal protein L4 [Streptococcus thermophilus LMG 18311]
gi|55739805|gb|AAV63446.1| 50S ribosomal protein L4 [Streptococcus thermophilus CNRZ1066]
gi|116101874|gb|ABJ67020.1| LSU ribosomal protein L4P [Streptococcus thermophilus LMD-9]
gi|228250247|gb|EEK09500.1| ribosomal protein L4/L1 family protein [Streptococcus salivarius
SK126]
gi|312279258|gb|ADQ63915.1| 50S ribosomal protein L4 [Streptococcus thermophilus ND03]
gi|322125655|gb|EFX96982.1| 50S ribosomal protein L4 [Streptococcus vestibularis ATCC 49124]
gi|338743797|emb|CCB94307.1| 50S ribosomal protein L4 [Streptococcus salivarius CCHSS3]
gi|339279121|emb|CCC20869.1| 50S ribosomal protein L4 [Streptococcus thermophilus JIM 8232]
gi|339291163|gb|AEJ52510.1| 50S ribosomal protein L4 [Streptococcus salivarius 57.I]
gi|345526247|gb|EGX29559.1| 50S ribosomal protein L4 [Streptococcus salivarius M18]
gi|387575571|gb|AFJ84277.1| 50S ribosomal protein L4 [Streptococcus thermophilus MN-ZLW-002]
gi|400181671|gb|EJO15938.1| LSU ribosomal protein L1E (L4P) [Streptococcus salivarius K12]
gi|444748223|gb|ELW73201.1| 50S ribosomal protein L4 [Streptococcus thermophilus MTCC 5461]
gi|444748260|gb|ELW73237.1| 50S ribosomal protein L4 [Streptococcus thermophilus MTCC 5460]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT N
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEALSFAAPKTAEFANV 142
Query: 240 YNQMENTKKVLLC--DGGCIHEKLKLATQNLHYVNV 273
+ + KVL+ +G E L+ +NL V V
Sbjct: 143 LSALSIDSKVLVIVEEGNKFAE---LSARNLANVTV 175
>gi|282855207|ref|ZP_06264539.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
J139]
gi|386070059|ref|YP_005984955.1| ribosomal protein, L4/L1 family [Propionibacterium acnes ATCC
11828]
gi|422467511|ref|ZP_16544063.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL110PA4]
gi|422468957|ref|ZP_16545487.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL110PA3]
gi|282581795|gb|EFB87180.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
J139]
gi|314982252|gb|EFT26345.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL110PA3]
gi|315090439|gb|EFT62415.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL110PA4]
gi|353454426|gb|AER04945.1| ribosomal protein, L4/L1 family [Propionibacterium acnes ATCC
11828]
Length = 301
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 109/185 (58%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS K +V + + +KVL+ E L+ +NL V
Sbjct: 121 ARDNRIFVVTSLVDGDKPSTKQAKVV--LSGVAELRKVLVVLDRS-DEIDWLSVRNLSEV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|95931441|ref|ZP_01314147.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684]
gi|95132509|gb|EAT14202.1| ribosomal protein L4/L1e [Desulfuromonas acetoxidans DSM 684]
Length = 206
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 2/155 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VFD +R ++H +VR+QLA R+QGT + K + V+G GKKP++QKGTG AR GT+ P
Sbjct: 23 VFDAEVRPYLVHDMVRYQLAARRQGTSACKNRAAVAGGGKKPFKQKGTGNARQGTVTAPN 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
GG GP PR++A KLN+KV++L L ALS+R E KL V +L++ S TK
Sbjct: 83 HVGGGVAFGPTPRNYAFKLNRKVKKLALCSALSSRFQEQKLTVLSELKLDSISTKSFKQV 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ E +++ D + +++L+ +NL V VL
Sbjct: 143 VDRFELKDALVVIDAA--NPEVELSARNLRNVKVL 175
>gi|225869537|ref|YP_002745484.1| 50S ribosomal protein L4 [Streptococcus equi subsp. equi 4047]
gi|254803754|sp|C0M6G6.1|RL4_STRE4 RecName: Full=50S ribosomal protein L4
gi|225698941|emb|CAW91969.1| 50S ribosomal protein L4 [Streptococcus equi subsp. equi 4047]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 93/154 (60%), Gaps = 3/154 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L D+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++
Sbjct: 19 LNDDIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R PQ+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT
Sbjct: 79 RSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVESLSFAAPKTAE 138
Query: 236 IVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNL 268
+ + +TK ++L + G +E L+ +NL
Sbjct: 139 FAKVLSALSIDTKVLVLVEEG--NEFAALSARNL 170
>gi|372269399|ref|ZP_09505447.1| 50S ribosomal protein L4 [Alteromonas sp. S89]
Length = 204
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 99/163 (60%), Gaps = 2/163 (1%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
KG + ++ F +D++H+ V +A +QGT + K S VSG GKKPWRQKGTGRA
Sbjct: 12 KGTVAVSEVAFGREFNQDLVHQAVVAYMAGARQGTKAQKNRSAVSGGGKKPWRQKGTGRA 71
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
R GT+R P +R G +PR H++KLNKK+ R L+ LS A + +L+V E +V +
Sbjct: 72 RAGTIRSPLWRSGGVTFAAEPRDHSVKLNKKMYRAALRCILSELARQERLVVVESFDVEA 131
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
KTK +V Q + + +++ + ++E L LA +NLH ++V
Sbjct: 132 PKTKQLVTKLAQYDLSDALIVTEE--VNENLYLAARNLHKIDV 172
>gi|342163021|ref|YP_004767660.1| 50S ribosomal protein L4 [Streptococcus pseudopneumoniae IS7493]
gi|341932903|gb|AEL09800.1| 50S ribosomal protein L4 [Streptococcus pseudopneumoniae IS7493]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL VF + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAVFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|449018858|dbj|BAM82260.1| mitochondrial ribosomal protein L4 precursor [Cyanidioschyzon
merolae strain 10D]
Length = 471
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 80/117 (68%), Gaps = 1/117 (0%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E F ++ + D P R D+IHRVV +Q A +++GT TKT +EVSG+G+KPW QKGTG
Sbjct: 145 EPSCFASVSRALLDAPFRPDVIHRVVLYQRAAQRRGTAHTKTRAEVSGSGRKPWAQKGTG 204
Query: 169 RARHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
RAR G+LR PQFRGG HGP+ R A +L KKVR LGL AL+ R EG+L V E
Sbjct: 205 RARAGSLRAPQFRGGGVAHGPRADRIWAQRLPKKVRWLGLASALTRRFQEGRLWVLE 261
>gi|110800870|ref|YP_697093.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124]
gi|168211904|ref|ZP_02637529.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626]
gi|168215177|ref|ZP_02640802.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969]
gi|168216632|ref|ZP_02642257.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239]
gi|169347046|ref|ZP_02865988.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495]
gi|182626931|ref|ZP_02954664.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721]
gi|422347466|ref|ZP_16428378.1| 50S ribosomal protein L4 [Clostridium perfringens WAL-14572]
gi|422875350|ref|ZP_16921835.1| 50S ribosomal protein L4 [Clostridium perfringens F262]
gi|123148513|sp|Q0TMP7.1|RL4_CLOP1 RecName: Full=50S ribosomal protein L4
gi|110675517|gb|ABG84504.1| 50S ribosomal protein L4 [Clostridium perfringens ATCC 13124]
gi|169296729|gb|EDS78858.1| ribosomal protein L4 [Clostridium perfringens C str. JGS1495]
gi|170710168|gb|EDT22350.1| ribosomal protein L4 [Clostridium perfringens B str. ATCC 3626]
gi|170713383|gb|EDT25565.1| ribosomal protein L4 [Clostridium perfringens CPE str. F4969]
gi|177907721|gb|EDT70336.1| ribosomal protein L4 [Clostridium perfringens D str. JGS1721]
gi|182381262|gb|EDT78741.1| ribosomal protein L4 [Clostridium perfringens NCTC 8239]
gi|373224764|gb|EHP47101.1| 50S ribosomal protein L4 [Clostridium perfringens WAL-14572]
gi|380303880|gb|EIA16176.1| 50S ribosomal protein L4 [Clostridium perfringens F262]
Length = 204
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 7/178 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF V + K +H+VV QLA ++QGT S KT SEV G
Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +R++ + AL+++ A+
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V EDL + KTK V N E K +++ ++E + + +N+ V V+P
Sbjct: 121 --MVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT--AEVNENVYKSARNIEGVTVMP 174
>gi|450088768|ref|ZP_21854928.1| 50S ribosomal protein L4 [Streptococcus mutans NV1996]
gi|449216262|gb|EMC16396.1| 50S ribosomal protein L4 [Streptococcus mutans NV1996]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 100/174 (57%), Gaps = 5/174 (2%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G + L +FD+ + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVTLNDAIFDIEPNESVVFDVIISQRANLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+ KL +KVRRL LK SA+ A+ K + + L
Sbjct: 72 RARQGSIRAPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVADEKFVAVDALSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+ KTK + KVL L +G ++ +L+ +NL V V + S
Sbjct: 132 EAPKTKEFATVLAALNVDSKVLVILEEG---NQAAELSARNLPNVKVATAATAS 182
>gi|225016284|ref|ZP_03705476.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum
DSM 5476]
gi|224950959|gb|EEG32168.1| hypothetical protein CLOSTMETH_00187 [Clostridium methylpentosum
DSM 5476]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 107/195 (54%), Gaps = 8/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L+ +F + K ++H V LA ++QGT ST T +EV G GKK
Sbjct: 4 VAVMNMAGKEVSKIDLSDAIFGIEPNKAVLHMAVVNYLANQRQGTQSTLTRTEVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ G GPKPR ++ LNKKV+RL +K ALSA+A + L
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTHGGVALGPKPRDYSYSLNKKVKRLAMKSALSAKAVDNDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V + + + +KTK ++ + KK L+ + +K A +P VR+
Sbjct: 124 IVVDSIALAEYKTKEVIKMLGALGADKKALIVLPEMDAKVIKSAAN-------IPG-VRT 175
Query: 281 TTQSFLIYYYFLDFD 295
T + L Y L+ D
Sbjct: 176 TQVNELNVYDILNHD 190
>gi|296111430|ref|YP_003621812.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154]
gi|339491299|ref|YP_004705804.1| 50S ribosomal protein L4 [Leuconostoc sp. C2]
gi|295832962|gb|ADG40843.1| 50S ribosomal protein L4 [Leuconostoc kimchii IMSNU 11154]
gi|338852971|gb|AEJ31181.1| 50S ribosomal protein L4 [Leuconostoc sp. C2]
Length = 207
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + +I V Q A +QGTH+ K S VSG G+KPW+QKGTGRAR G++R PQ
Sbjct: 23 VFAIEPNNTVITDAVLMQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRARAGSIREPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTK-FIVN 238
FRGG + GP PRS+A ++N+K +L LK LS + AEGKL+V + L + KT+ F
Sbjct: 83 FRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVAEGKLVVVDALTFEAPKTQDFKKV 142
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
N +TK +++ D +E L+ +NL V V+ +
Sbjct: 143 LTNLAADTKTLVVVDEN--NENAILSARNLANVQVMTT 178
>gi|384106917|ref|ZP_10007821.1| 50S ribosomal protein L4 [Rhodococcus imtechensis RKJ300]
gi|383833368|gb|EID72831.1| 50S ribosomal protein L4 [Rhodococcus imtechensis RKJ300]
Length = 229
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD P ++H+VV QLA +QGTH+TKT EV G GKKP+RQKGTGRAR
Sbjct: 24 GTVDLPPEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGGKKPYRQKGTGRAR 83
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V +L +
Sbjct: 84 QGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNERIHVITELVAGQT 143
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDG 254
PS TK + ++ + KKVLL G
Sbjct: 144 PS--TKSARTFLGEISDRKKVLLVVG 167
>gi|239623348|ref|ZP_04666379.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522314|gb|EEQ62180.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 206
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 92/154 (59%), Gaps = 1/154 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ G + L VF V + + ++H V QLA ++QGT KT SEVSG G+K
Sbjct: 4 VSVYNMEGKEVGTLELNDAVFGVEVNEHLVHLAVVAQLANKRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ++GG + P PR + I+LNKK +R LK AL++R K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWKGGGVVFAPTPRDYTIRLNKKEKRAALKSALTSRVQANKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCD 253
+V ++L+ KTK + ++ N V+L D
Sbjct: 124 IVVDELKFDEIKTKKFQGVMDSLKVNKALVVLAD 157
>gi|29374852|ref|NP_814005.1| 50S ribosomal protein L4 [Enterococcus faecalis V583]
gi|46577230|sp|Q839G3.1|RL4_ENTFA RecName: Full=50S ribosomal protein L4
gi|29342310|gb|AAO80076.1| ribosomal protein L4 [Enterococcus faecalis V583]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 105/180 (58%), Gaps = 6/180 (3%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + + +++ + Q A +QGTH+ K S V G
Sbjct: 1 MPNVALFKQDGTQNGEITLNEEIFGIEPNESVVYDAIIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ K KKVRRL +K LS + AE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKFPKKVRRLAMKSVLSDKVAE 120
Query: 218 GKLLVFEDLEVPSHKTK-FIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
L+ E L + KTK F N +TK +++ + G ++ L+ +NL V+V+ S
Sbjct: 121 NNLVAVEGLSFDAPKTKEFKQVLANLSIDTKVLVVLENG--NDFAALSARNLPNVSVVTS 178
>gi|383938939|ref|ZP_09992136.1| 50S ribosomal protein L4 [Streptococcus pseudopneumoniae SK674]
gi|418973596|ref|ZP_13521575.1| 50S ribosomal protein L4 [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383347665|gb|EID25640.1| 50S ribosomal protein L4 [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383714280|gb|EID70289.1| 50S ribosomal protein L4 [Streptococcus pseudopneumoniae SK674]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL VF + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|336116749|ref|YP_004571516.1| 50S ribosomal protein L4 [Microlunatus phosphovorus NM-1]
gi|334684528|dbj|BAK34113.1| 50S ribosomal protein L4 [Microlunatus phosphovorus NM-1]
Length = 235
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + L D+FDV +IH+VV QLA +QGTH+ KT SEV+G G K
Sbjct: 7 IDVIDADGGTSGSVELPADLFDVNANIPLIHQVVVAQLAAARQGTHAVKTRSEVAGGGAK 66
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R PQ+ GG +HGP+PR +A + KK+ L+ ALS RA +G++
Sbjct: 67 PYRQKGTGRARQGSIRAPQYTGGGIVHGPQPRDYAQRTPKKMIAAALRGALSDRARDGRV 126
Query: 221 LVFEDL---EVPSHKTKFIV 237
V DL + PS KT V
Sbjct: 127 HVVADLTIGDAPSTKTALSV 146
>gi|406668997|ref|ZP_11076285.1| 50S ribosomal protein L4 [Facklamia ignava CCUG 37419]
gi|405584680|gb|EKB58563.1| 50S ribosomal protein L4 [Facklamia ignava CCUG 37419]
Length = 206
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 103/177 (58%), Gaps = 5/177 (2%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +D G + L +F + + ++ V Q A +QGTH+ K S+V G
Sbjct: 1 MPKVTLYKQDGTENGQIELNDAIFGIEPNESVVFDAVIMQRASMRQGTHAVKNRSQVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+ GG + GP PRS+A KL KKVRRL ++ ALS +AAE
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWVGGGVVFGPTPRSYAYKLPKKVRRLAIRSALSMKAAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++ V E L + KTK + + K +++ +G ++ L+ +NL V V+
Sbjct: 121 DQIKVIEGLAFEAPKTKAFKDILTNLNLGKTLVVLEGD--NDNAYLSARNLPNVKVI 175
>gi|317496189|ref|ZP_07954549.1| ribosomal protein L4/L1 family protein [Gemella morbillorum M424]
gi|316913764|gb|EFV35250.1| ribosomal protein L4/L1 family protein [Gemella morbillorum M424]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 94/155 (60%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNED--KGFMVLAGD-VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + F +D K V A D VF + + ++ + V Q A +QGTH TK SEVSG
Sbjct: 1 MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ K+ +K+RRL L+ ALS++ A
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
++ E L S KTK + + KKVL
Sbjct: 121 NEVFALETLTFDSIKTKNFKEMLSNLSLEKKVLFV 155
>gi|443921988|gb|ELU41505.1| 50S ribosomal protein L4 [Rhizoctonia solani AG-1 IA]
Length = 324
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L+ DVF +R+DI+H V + L +QGT STKT +EVSG+ +K QKGTGRAR G +
Sbjct: 106 LSHDVFGQNLRRDILHACVVYHLDGLRQGTASTKTRAEVSGSNRKIRPQKGTGRARLGDI 165
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P RGG T GPKPR L +KVR LG++IALSA+ +G+L LE P+ KTK
Sbjct: 166 RSPSIRGGGTAFGPKPRDFKTLLPRKVRELGMRIALSAKLRDGQLGAVSTLEWPTPKTKS 225
Query: 236 IVNYYNQMENTKKVLLCDG-GCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIY 288
+ ++ T + L G G I E L LA++N +P+++ T + +Y
Sbjct: 226 LRIRVEELGWTDRTLFVTGKGEIPEALNLASRN------IPTLLCETASNATVY 273
>gi|385813106|ref|YP_005849499.1| 50S ribosomal protein L4 [Lactobacillus helveticus H10]
gi|323465825|gb|ADX69512.1| 50S ribosomal protein L4 [Lactobacillus helveticus H10]
Length = 205
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ V Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETVIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMIDKDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V +P
Sbjct: 124 IVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIV---SDDNNVQLSARNLAKVKAVP 175
>gi|118470088|ref|YP_885820.1| 50S ribosomal protein L4 [Mycobacterium smegmatis str. MC2 155]
gi|399985821|ref|YP_006566169.1| 50S ribosomal protein L4 [Mycobacterium smegmatis str. MC2 155]
gi|166234688|sp|A0QSD2.1|RL4_MYCS2 RecName: Full=50S ribosomal protein L4
gi|118171375|gb|ABK72271.1| ribosomal protein L4/L1 family protein [Mycobacterium smegmatis
str. MC2 155]
gi|399230381|gb|AFP37874.1| 50S ribosomal protein L4 [Mycobacterium smegmatis str. MC2 155]
Length = 215
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKGTGRAR
Sbjct: 16 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 75
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA ++ V E +E +
Sbjct: 76 QGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQT 135
Query: 231 HKTKFIVNYYNQMENTKKVLLCDG 254
TK + + KKVL+ G
Sbjct: 136 PSTKSAKTFLGTLTENKKVLVVIG 159
>gi|295111421|emb|CBL28171.1| LSU ribosomal protein L4P [Synergistetes bacterium SGP1]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V +F + G M L+ VF PI +H+VV LA +QGTH+ KT +VSG GKK
Sbjct: 4 IKVVDFSGQSAGEMELSEVVFGAPIHVAAMHQVVVAHLANCRQGTHAVKTRGDVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQK TGRAR G+ R P + G HGPK R ++ K+NKKVRRL L ALS + + ++
Sbjct: 64 PWRQKHTGRARQGSTRSPLWVHGGVAHGPKMRDYSQKVNKKVRRLALLSALSVKVRDAQM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL---HYVNV 273
LV +E+ + TK + + + + K +++ G E + + +N+ Y+NV
Sbjct: 124 LVVRGMEMEAPSTKTMKGFMDAIGAEKALVIYSGNG--ENVARSVRNIPGARYLNV 177
>gi|291549415|emb|CBL25677.1| LSU ribosomal protein L4P [Ruminococcus torques L2-14]
Length = 206
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 105/188 (55%), Gaps = 8/188 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L VF V + + ++H V QLA +QGT KT SEVSG G+K
Sbjct: 4 VSVYNIEGKEVDTIELNDAVFGVEVNEHLVHMAVVNQLANNRQGTQKAKTRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ K+NKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPVPRDYSFKMNKKEKRAALKSALTSRVEENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V ++L KTK N + K +++ + G ++ ++++ +N +P V +
Sbjct: 124 IVVDELNFDEIKTKKFQAVLNNLNVNKALVVLEDG--NKNVEISAKN------IPDVKTA 175
Query: 281 TTQSFLIY 288
T + +Y
Sbjct: 176 HTNTINVY 183
>gi|22536244|ref|NP_687095.1| 50S ribosomal protein L4 [Streptococcus agalactiae 2603V/R]
gi|25010134|ref|NP_734529.1| 50S ribosomal protein L4 [Streptococcus agalactiae NEM316]
gi|76787912|ref|YP_328785.1| 50S ribosomal protein L4 [Streptococcus agalactiae A909]
gi|76798215|ref|ZP_00780465.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 18RS21]
gi|77406989|ref|ZP_00784004.1| ribosomal protein L4/L1 family [Streptococcus agalactiae H36B]
gi|77412287|ref|ZP_00788603.1| ribosomal protein L4/L1 family [Streptococcus agalactiae CJB111]
gi|77414565|ref|ZP_00790708.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 515]
gi|339302558|ref|ZP_08651604.1| 50S ribosomal protein L4 [Streptococcus agalactiae ATCC 13813]
gi|406708581|ref|YP_006763307.1| 50S ribosomal protein L4 [Streptococcus agalactiae GD201008-001]
gi|417004079|ref|ZP_11942855.1| 50S ribosomal protein L4 [Streptococcus agalactiae FSL S3-026]
gi|421147865|ref|ZP_15607538.1| 50S ribosomal protein L4 [Streptococcus agalactiae GB00112]
gi|421532428|ref|ZP_15978790.1| 50S ribosomal protein L4 [Streptococcus agalactiae STIR-CD-17]
gi|424050357|ref|ZP_17787903.1| 50S ribosomal protein L4 [Streptococcus agalactiae ZQ0910]
gi|46577261|sp|Q8E2D0.1|RL4_STRA5 RecName: Full=50S ribosomal protein L4
gi|46577263|sp|Q8E7T7.1|RL4_STRA3 RecName: Full=50S ribosomal protein L4
gi|109893642|sp|Q3K3W8.1|RL4_STRA1 RecName: Full=50S ribosomal protein L4
gi|22533064|gb|AAM98967.1|AE014194_12 ribosomal protein L4 [Streptococcus agalactiae 2603V/R]
gi|23094485|emb|CAD45704.1| ribosomal protein L4 [Streptococcus agalactiae NEM316]
gi|76562969|gb|ABA45553.1| ribosomal protein L4 [Streptococcus agalactiae A909]
gi|76586424|gb|EAO62932.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 18RS21]
gi|77159363|gb|EAO70531.1| ribosomal protein L4/L1 family [Streptococcus agalactiae 515]
gi|77161677|gb|EAO72672.1| ribosomal protein L4/L1 family [Streptococcus agalactiae CJB111]
gi|77174394|gb|EAO77248.1| ribosomal protein L4/L1 family [Streptococcus agalactiae H36B]
gi|319743994|gb|EFV96374.1| 50S ribosomal protein L4 [Streptococcus agalactiae ATCC 13813]
gi|341578365|gb|EGS28761.1| 50S ribosomal protein L4 [Streptococcus agalactiae FSL S3-026]
gi|389648131|gb|EIM69643.1| 50S ribosomal protein L4 [Streptococcus agalactiae ZQ0910]
gi|401685486|gb|EJS81493.1| 50S ribosomal protein L4 [Streptococcus agalactiae GB00112]
gi|403642343|gb|EJZ03196.1| 50S ribosomal protein L4 [Streptococcus agalactiae STIR-CD-17]
gi|406649466|gb|AFS44867.1| 50S ribosomal protein L4 [Streptococcus agalactiae GD201008-001]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 99/169 (58%), Gaps = 9/169 (5%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E+L + KT +
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVENLSFAAPKTAEFASV 142
Query: 240 YNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ + KVL L +G +E L+ +NL V +V +TT S L
Sbjct: 143 LSALSIDSKVLVILEEG---NEFAALSARNLPNV----TVATATTASVL 184
>gi|453075557|ref|ZP_21978343.1| 50S ribosomal protein L4 [Rhodococcus triatomae BKS 15-14]
gi|452762983|gb|EME21270.1| 50S ribosomal protein L4 [Rhodococcus triatomae BKS 15-14]
Length = 223
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 5/159 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V N G + L ++FD ++H+VV QLA +QGTHSTKT EV G G
Sbjct: 8 LTLDVRNADGGTNGTVDLPAEIFDAQANIALMHQVVVAQLAAARQGTHSTKTRGEVRGGG 67
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGPKPR ++ + KK++ L+ ALS RA
Sbjct: 68 KKPYRQKGTGRARQGSTRAPQFAGGGTVHGPKPRDYSQRTPKKMKAAALRGALSDRARNE 127
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDG 254
++ V +L + PS TK + ++ + KK LL G
Sbjct: 128 RIHVITELVAGQTPS--TKSARKFLGEISDRKKFLLVVG 164
>gi|441204845|ref|ZP_20972301.1| 50S ribosomal protein L4 [Mycobacterium smegmatis MKD8]
gi|440629311|gb|ELQ91101.1| 50S ribosomal protein L4 [Mycobacterium smegmatis MKD8]
Length = 209
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKGTGRAR
Sbjct: 10 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGTGRAR 69
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA ++ V E +E +
Sbjct: 70 QGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQT 129
Query: 231 HKTKFIVNYYNQMENTKKVLLCDG 254
TK + + KKVL+ G
Sbjct: 130 PSTKSAKTFLGTLTENKKVLVVIG 153
>gi|331702079|ref|YP_004399038.1| 50S ribosomal protein L4 [Lactobacillus buchneri NRRL B-30929]
gi|406027552|ref|YP_006726384.1| 50S ribosomal protein L4 [Lactobacillus buchneri CD034]
gi|329129422|gb|AEB73975.1| ribosomal protein L4/L1e [Lactobacillus buchneri NRRL B-30929]
gi|405126041|gb|AFS00802.1| 50S ribosomal protein L4 [Lactobacillus buchneri CD034]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + +++ + Q A +QGTHS K S V G GKKPWRQKGTGRAR
Sbjct: 15 GTVALNDGIFGIEPNNNVVFDAIVMQRASLRQGTHSVKNRSAVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ +L KKV RL LK LS + ++ KL+V + L+ +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYRLPKKVSRLALKSVLSEKVSDNKLVVVDTLQFDAP 134
Query: 232 KTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPS 276
KTK +++ + K V+L D +EK L+ +NL V V+ +
Sbjct: 135 KTKEFAELLGKLDVSTKTLVVLEDD---NEKAVLSARNLENVKVVSA 178
>gi|342214833|ref|ZP_08707504.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 780 str.
F0422]
gi|341590364|gb|EGS33607.1| 50S ribosomal protein L4 [Veillonella sp. oral taxon 780 str.
F0422]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 100/166 (60%), Gaps = 5/166 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF V + ++H+ V QL+ + GTH+TKT EV G GKKPWRQKGTGRAR
Sbjct: 15 GEIQLNDAVFGVEVNAAVMHQAVVRQLSNERLGTHATKTRGEVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G+ R P + GG GP+PRS+ + +K RRL +K ALS + +L V ++L++ +
Sbjct: 75 AGSSRSPIWVGGGITFGPQPRSYYKAMPRKARRLAVKSALSDKVNNSELFVIDELKLAAP 134
Query: 232 KTKFIVNYYN--QMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
KTK ++N N Q+ + K + + DG ++L+ +N+ V LP
Sbjct: 135 KTKEVLNILNNFQVGDAKVLFITDGDV---NVELSARNIQGVKALP 177
>gi|326773964|ref|ZP_08233246.1| ribosomal protein L4/L1 family protein [Actinomyces viscosus C505]
gi|326636103|gb|EGE37007.1| ribosomal protein L4/L1 family protein [Actinomyces viscosus C505]
Length = 214
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 98/162 (60%), Gaps = 5/162 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+ + L + V + + G + L +VFD P+ ++H+VV QLA +QGTH+TKT +V
Sbjct: 1 MTEALTVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
G G+KP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS R
Sbjct: 61 RGGGRKPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYSQRTPKKMKAAALRSALSDR 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCD 253
A G++ V + VPS K + + + K +++ D
Sbjct: 121 ARNGRVHVITEFVTTTVPSTKNALVA--LRNLTDRKALVIVD 160
>gi|376259803|ref|YP_005146523.1| 50S ribosomal protein L4 [Clostridium sp. BNL1100]
gi|373943797|gb|AEY64718.1| 50S ribosomal protein L4, bacterial/organelle [Clostridium sp.
BNL1100]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 111/183 (60%), Gaps = 11/183 (6%)
Query: 101 IPVTNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + +N E G + L +VF + +++H VV QLA ++QGT STKT SEV G
Sbjct: 1 MPKVDLYNMKGEVVGDIQLCDNVFGAEVNNEVLHAVVVNQLANKRQGTQSTKTKSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R Q+ G + GPKPRS+ + KKV+R+ +K AL+++ +
Sbjct: 61 GKKPWRQKGTGRARQGSIRSAQWIKGGIVLGPKPRSYRYTMPKKVKRIAMKSALTSKVSG 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNL-----HYV 271
++ V + L + + KTK +V N ++ ++ +++ D +E + + +N+ YV
Sbjct: 121 NEIFVLDALTLEAIKTKSMVGVLNNLKVDSSALIVIDSK--NENIVKSARNIPGIKTAYV 178
Query: 272 NVL 274
N L
Sbjct: 179 NTL 181
>gi|291547983|emb|CBL21091.1| LSU ribosomal protein L4P [Ruminococcus sp. SR1/5]
Length = 206
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 82/134 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N + G M L VF V I + ++H V QLA +QGT KT SEV G G+K
Sbjct: 4 VTVYNMEGNEVGTMELNDAVFGVEINEHLVHLAVVRQLANNRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+ GG + P PR + +K+NKK RR LK AL+++ + KL
Sbjct: 64 PWRQKGTGHARQGSIRAPQWTGGGVVFAPVPRDYEVKMNKKERRAALKSALTSKVQDNKL 123
Query: 221 LVFEDLEVPSHKTK 234
+V + L + KTK
Sbjct: 124 VVVDSLALAEVKTK 137
>gi|336322753|ref|YP_004602720.1| 50S ribosomal protein L4 [Flexistipes sinusarabici DSM 4947]
gi|336106334|gb|AEI14152.1| ribosomal protein L4/L1e [Flexistipes sinusarabici DSM 4947]
Length = 208
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
++ + D P + ++H VV+ QLA R+ GTH+TK + +SG GKKPWRQKGTGRAR G+
Sbjct: 19 ISEQLMDYPEKPWLVHEVVKMQLAGRRAGTHATKNRANISGGGKKPWRQKGTGRARAGSS 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKF 235
R P + GG TM GP+PRS+A K+ KK R LK A S++ +G + +F+ L + KTK
Sbjct: 79 RSPLWVGGATMFGPQPRSYAYKMPKKKVRSALKSAFSSKLKDGSVKIFDKLATENGKTKE 138
Query: 236 IVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+++ + VL+ EKL A +N+ YV +L
Sbjct: 139 AAEILAKLKAERNVLVL-FTEYDEKLIKAFRNIPYVKLL 176
>gi|340356780|ref|ZP_08679421.1| 50S ribosomal protein L4 [Sporosarcina newyorkensis 2681]
gi|339620118|gb|EGQ24689.1| 50S ribosomal protein L4 [Sporosarcina newyorkensis 2681]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + +++ + Q A +QG H KT +EV+G G+KPWRQKGTGRAR
Sbjct: 15 GDIELNDAIFGIEPNEAVLYEAIVQQQASLRQGNHKVKTRAEVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ K+ KKVRRL L ALS + +L+V ++L +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYSYKMPKKVRRLALLSALSTKVRAEELIVVDNLAFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK V + TKK L + E + L+ +N+ V+V+
Sbjct: 135 KTKGFVKVLEDLSITKKALFVTAD-LEETVALSARNIPGVSVV 176
>gi|46396649|sp|Q8XHS4.2|RL4_CLOPE RecName: Full=50S ribosomal protein L4
Length = 204
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 7/178 (3%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P FN++ G + L VF V + K +H+VV QLA ++QGT S KT SEV G
Sbjct: 1 MPKVGLFNKEGQQVGDIQLNEQVFGVEVNKYALHQVVVAQLANKRQGTQSAKTRSEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G++R PQ+ G + PKPR + + + K +R++ + AL+++ A+
Sbjct: 61 GIKPWRQKGTGRARQGSIRAPQWIKGGVVFAPKPRDYRMSIPKSMRKVAMTSALTSKVAD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V EDL + KTK V N E K +++ ++E + + +N+ V V+P
Sbjct: 121 --MVVLEDLTFEAPKTKEAVKMLNAFEAKKTLIIT--AEVNENVYKSARNIRGVTVMP 174
>gi|238922831|ref|YP_002936344.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656]
gi|259491558|sp|C4ZBD5.1|RL4_EUBR3 RecName: Full=50S ribosomal protein L4
gi|238874503|gb|ACR74210.1| ribosomal protein L4/L1e [Eubacterium rectale ATCC 33656]
gi|291523733|emb|CBK89320.1| LSU ribosomal protein L4P [Eubacterium rectale DSM 17629]
gi|291528801|emb|CBK94387.1| LSU ribosomal protein L4P [Eubacterium rectale M104/1]
Length = 206
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 9/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L +F V I + ++H V QLA ++QGT KT SEV G G+K
Sbjct: 4 VAVYNMEGKEVDKIELNDSIFGVEINEHLVHMAVLQQLANKRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G+ R PQ+ GG + P PR ++ KLNKK +R LK AL++R E K
Sbjct: 64 PWRQKGTGHARQGSTRSPQWTGGGVVFAPTPRDYSFKLNKKEKRAALKSALTSRVVENKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V ++L++ KTK V + K +++ + + EK+ + N +P+ V++
Sbjct: 124 VVVDELKLDEIKTKKFVEVLKNLNVEKALVVLND--MDEKVIASAAN------IPT-VKT 174
Query: 281 TTQSFLIYYYFLDFD 295
T + L + L +D
Sbjct: 175 TQTNELNVFDVLKYD 189
>gi|379796571|ref|YP_005326572.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873564|emb|CCE59903.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 85/141 (60%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAIHLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L V + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQENGLTVVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N +E KKVL+
Sbjct: 135 KTKEFKNVLTTLEQPKKVLVV 155
>gi|322391200|ref|ZP_08064672.1| 50S ribosomal protein L4 [Streptococcus peroris ATCC 700780]
gi|321145953|gb|EFX41342.1| 50S ribosomal protein L4 [Streptococcus peroris ATCC 700780]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNESVVFDVIVSQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|304405615|ref|ZP_07387274.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9]
gi|304345654|gb|EFM11489.1| ribosomal protein L4/L1e [Paenibacillus curdlanolyticus YK9]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 97/168 (57%), Gaps = 1/168 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N G + LA VF + ++H V Q A ++GTH TK SEV G G+K
Sbjct: 4 VALYNVSGSQVGEVELADSVFGIQPNTHVLHSAVLLQQAAERRGTHKTKGRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G++R PQ+ GG T+ GP PRS+ KL +KVRRL +K ALS + ++
Sbjct: 64 PWKQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYGFKLPRKVRRLAIKSALSTKVISNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNL 268
+V + L + + KTK N ++ +K L+ + + L+ +N+
Sbjct: 124 VVLDQLALATPKTKEFAAILNNLKVARKALVVTANY-EDNVALSARNI 170
>gi|336179781|ref|YP_004585156.1| 50S ribosomal protein L4 [Frankia symbiont of Datisca glomerata]
gi|334860761|gb|AEH11235.1| ribosomal protein L4/L1e [Frankia symbiont of Datisca glomerata]
Length = 263
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 86/127 (67%), Gaps = 3/127 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L G++FDV + +IH+VV QLA +QGTHST+T EV G G+KP+RQKGTGR
Sbjct: 37 EAGSVDLPGEIFDVALNVPLIHQVVVAQLAAARQGTHSTRTRGEVRGGGRKPYRQKGTGR 96
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV---FEDL 226
AR G+LR PQF GG +HGPKPRS+ + KK++ L+ ALS RA G++ V F
Sbjct: 97 ARQGSLRAPQFTGGGVVHGPKPRSYEQRTPKKMKAAALRGALSDRARGGRVHVVSSFVSG 156
Query: 227 EVPSHKT 233
+ PS KT
Sbjct: 157 DTPSTKT 163
>gi|209558628|ref|YP_002285100.1| 50S ribosomal protein L4 [Streptococcus pyogenes NZ131]
gi|226731433|sp|B5XJ37.1|RL4_STRPZ RecName: Full=50S ribosomal protein L4
gi|209539829|gb|ACI60405.1| LSU ribosomal protein L4p (L1e) [Streptococcus pyogenes NZ131]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 VFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKV 142
Query: 240 YNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+ + +TK ++L + G +E L+ +NL V V + S
Sbjct: 143 LSALSIDTKVLVLVEEG--NEFAALSARNLPNVTVATAATAS 182
>gi|352518454|ref|YP_004887771.1| 50S ribosomal protein L4 [Tetragenococcus halophilus NBRC 12172]
gi|348602561|dbj|BAK95607.1| 50S ribosomal protein L4 [Tetragenococcus halophilus NBRC 12172]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 100/182 (54%), Gaps = 10/182 (5%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L ++F + + ++ + Q A +QGTH+ K S VSG
Sbjct: 1 MPNVALFKQDGSQNGEVTLNEEIFGIEPNESVVFDAITMQRASLRQGTHAVKNRSAVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR GT+R PQ+RGG + GP PRS++ KL KKVRRL +K LS + A
Sbjct: 61 GKKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKLPKKVRRLAIKSVLSEKVAS 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLAT---QNLHYVNVL 274
+V + L + KTK + KVL+ + + K A+ +NL V V+
Sbjct: 121 NNFVVVDALNFDAPKTKEFKQVLENLSIDSKVLV----VVEPENKFASLSGRNLSNVTVV 176
Query: 275 PS 276
S
Sbjct: 177 TS 178
>gi|374308550|ref|YP_005054981.1| 50S ribosomal protein L4/L1 [Filifactor alocis ATCC 35896]
gi|291166878|gb|EFE28924.1| 50S ribosomal protein L4/L1 [Filifactor alocis ATCC 35896]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 93/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E M L+ ++F I + ++++VV+ LA ++ GT S KT +EV G G K
Sbjct: 4 VDVLNINGEKVSEMELSENLFGAEINEHVVYQVVKNHLANKRVGTQSAKTRAEVRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ++GG + PKPR ++ + KK+RRL LK L+ + EG L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWKGGGVVFAPKPRDYSYTVPKKIRRLALKSVLTDKVNEGNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V +D+ + KT+ + ++ KK L+
Sbjct: 124 VVVDDINLTEWKTREFAKMLSALKVGKKALVV 155
>gi|403510152|ref|YP_006641790.1| 50S ribosomal protein L4 [Nocardiopsis alba ATCC BAA-2165]
gi|402799443|gb|AFR06853.1| 50S ribosomal protein L4 [Nocardiopsis alba ATCC BAA-2165]
Length = 223
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 105/179 (58%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N KG + L VF + +IH+VV QLA +QGTH+TKT EV G GKK
Sbjct: 4 IEVKNPEGGSKGSVELPESVFAQQVSIPLIHQVVNGQLAAARQGTHATKTRGEVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R PQ+ GG T+HGP+PR ++ + KK++ L+ ALS RAA G++
Sbjct: 64 PYRQKGTGRARQGSIRAPQYTGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRAAHGRI 123
Query: 221 LV---FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
V F + S T+ + Q+ + KVL+ E + A +NL V++L +
Sbjct: 124 HVISHFVAEDADSKLTQTALKSLRQVTESDKVLVVL-AREDEHNRRALRNLEEVHILDA 181
>gi|429123821|ref|ZP_19184353.1| 50S ribosomal protein L4 [Brachyspira hampsonii 30446]
gi|445062118|ref|ZP_21374553.1| 50S ribosomal protein L4 [Brachyspira hampsonii 30599]
gi|426280390|gb|EKV57405.1| 50S ribosomal protein L4 [Brachyspira hampsonii 30446]
gi|444506513|gb|ELV06840.1| 50S ribosomal protein L4 [Brachyspira hampsonii 30599]
Length = 215
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 106/177 (59%), Gaps = 7/177 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + + N + G + + ++F + ++++ ++ +LA R+QGTHSTKT +EVSG G
Sbjct: 1 MEVVILNENGDSVGNLEIVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKPWRQKGTGRAR G+ R P + GG H PKPR ++ +L KK++R L LS +
Sbjct: 61 KKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPRDYSYRLPKKMKRKALLSVLSLKYGNN 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQME--NTKKVLLCDG-----GCIHEKLKLATQNL 268
L VFED + KTK + ++ ++++ NT+KV G G + KL L+ +N+
Sbjct: 121 VLKVFEDFTFDAPKTKRMASFISKVKEPNTRKVAFVVGKDESLGDNYNKLLLSLRNI 177
>gi|355703125|gb|EHH29616.1| hypothetical protein EGK_10089 [Macaca mulatta]
Length = 296
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 119/234 (50%), Gaps = 14/234 (5%)
Query: 53 GLSFLASRKFSTTILTPDSSEGAFPSDLLLKKTVLTPDITIGLH----QDLVIPVTNFFN 108
GLS LA T + + A S+ L + + ++ + H Q V + F
Sbjct: 20 GLSSLAEEAARPT---ENPEQVAVASEGLPEPVLRKVELPVPAHRRPVQAWVESLRGFEQ 76
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E G L DVF R DI+H+V WQ ++ TKT +EV G G+KPW QKGTG
Sbjct: 77 ERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTG 136
Query: 169 RARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
RARHG++R P +RGG HGP+ P S+ L KVR LGLK+ALS + A+ L + + LE
Sbjct: 137 RARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALSIKLAQDDLHIMDSLE 196
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYVNVLPSV 277
+P+ +++ VLL D +E++ AT L N++P+V
Sbjct: 197 LPTRDPQYLTELARYRRWGDSVLLVD--LTYEEMPQSIVEATSRLKTFNLIPAV 248
>gi|83591275|ref|YP_431284.1| 50S ribosomal protein L4P [Moorella thermoacetica ATCC 39073]
gi|109893605|sp|Q2RFP8.1|RL4_MOOTA RecName: Full=50S ribosomal protein L4
gi|83574189|gb|ABC20741.1| LSU ribosomal protein L4P [Moorella thermoacetica ATCC 39073]
Length = 207
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 105/176 (59%), Gaps = 1/176 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N + G + L VF + + ++H V QLA R++GT +T+ ++VSG G+K
Sbjct: 4 VALYNIQGQQVGEVDLDDSVFGGEVNEAVLHDAVVMQLASRRRGTAATRGWADVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R P +RGG + GP+PR + +L KKVRRL L+ AL+++ +G +
Sbjct: 64 PWRQKGTGRARAGSIRSPLWRGGAVIFGPQPRDYGYRLPKKVRRLALRSALASKVRDGNI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V ++L++ +TK + + + K L+ ++L+ +NL V L S
Sbjct: 124 IVLDELKMEKPRTKDMAHILKNLNAENKALVVT-ATREPNVELSARNLPGVRFLTS 178
>gi|307709911|ref|ZP_07646358.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK564]
gi|307711053|ref|ZP_07647475.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK321]
gi|322388400|ref|ZP_08062003.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779]
gi|335030309|ref|ZP_08523802.1| 50S ribosomal protein L4 [Streptococcus infantis SK1076]
gi|385260456|ref|ZP_10038602.1| 50S ribosomal protein L4 [Streptococcus sp. SK140]
gi|417847675|ref|ZP_12493637.1| 50S ribosomal protein L4 [Streptococcus mitis SK1073]
gi|417923530|ref|ZP_12566994.1| 50S ribosomal protein L4 [Streptococcus mitis SK569]
gi|417937378|ref|ZP_12580681.1| 50S ribosomal protein L4 [Streptococcus infantis X]
gi|418966666|ref|ZP_13518389.1| 50S ribosomal protein L4 [Streptococcus mitis SK616]
gi|419842833|ref|ZP_14366165.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779]
gi|421276538|ref|ZP_15727360.1| 50S ribosomal protein L4 [Streptococcus mitis SPAR10]
gi|422881238|ref|ZP_16927694.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK355]
gi|307617015|gb|EFN96193.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK321]
gi|307619282|gb|EFN98411.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK564]
gi|321140713|gb|EFX36215.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779]
gi|332364964|gb|EGJ42732.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK355]
gi|334266557|gb|EGL85034.1| 50S ribosomal protein L4 [Streptococcus infantis SK1076]
gi|339456509|gb|EGP69100.1| 50S ribosomal protein L4 [Streptococcus mitis SK1073]
gi|342836915|gb|EGU71119.1| 50S ribosomal protein L4 [Streptococcus mitis SK569]
gi|343398829|gb|EGV11357.1| 50S ribosomal protein L4 [Streptococcus infantis X]
gi|383346735|gb|EID24756.1| 50S ribosomal protein L4 [Streptococcus mitis SK616]
gi|385191300|gb|EIF38716.1| 50S ribosomal protein L4 [Streptococcus sp. SK140]
gi|385703410|gb|EIG40528.1| 50S ribosomal protein L4 [Streptococcus infantis ATCC 700779]
gi|395877014|gb|EJG88085.1| 50S ribosomal protein L4 [Streptococcus mitis SPAR10]
Length = 207
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNQSVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|387785033|ref|YP_006071116.1| 50S ribosomal protein L4 [Streptococcus salivarius JIM8777]
gi|338745915|emb|CCB96281.1| 50S ribosomal protein L4 [Streptococcus salivarius JIM8777]
Length = 207
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT N
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEALSFAAPKTVEFANV 142
Query: 240 YNQMENTKKVLLC--DGGCIHEKLKLATQNLHYVNV 273
+ + KVL+ +G E L+ +NL V V
Sbjct: 143 LSALSIDSKVLVIVEEGNKFAE---LSARNLANVTV 175
>gi|312862390|ref|ZP_07722633.1| 50S ribosomal protein L4 [Streptococcus vestibularis F0396]
gi|311102033|gb|EFQ60233.1| 50S ribosomal protein L4 [Streptococcus vestibularis F0396]
Length = 207
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 91/156 (58%), Gaps = 5/156 (3%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT N
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEALSFVAPKTAEFANV 142
Query: 240 YNQMENTKKVLLC--DGGCIHEKLKLATQNLHYVNV 273
+ + KVL+ +G E L+ +NL V V
Sbjct: 143 LSALSIDSKVLVIVEEGNKFAE---LSARNLANVTV 175
>gi|260102356|ref|ZP_05752593.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075]
gi|417013795|ref|ZP_11946705.1| 50S ribosomal protein L4 [Lactobacillus helveticus MTCC 5463]
gi|260083800|gb|EEW67920.1| 50S ribosomal protein L4 [Lactobacillus helveticus DSM 20075]
gi|328463365|gb|EGF35038.1| 50S ribosomal protein L4 [Lactobacillus helveticus MTCC 5463]
Length = 205
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMIDKDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V +P
Sbjct: 124 IVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIV---SDDNNVQLSARNLAKVKAVP 175
>gi|365827619|ref|ZP_09369470.1| 50S ribosomal protein L4/L1 [Actinomyces sp. oral taxon 849 str.
F0330]
gi|400294445|ref|ZP_10796230.1| 50S ribosomal protein L4 [Actinomyces naeslundii str. Howell 279]
gi|365264888|gb|EHM94674.1| 50S ribosomal protein L4/L1 [Actinomyces sp. oral taxon 849 str.
F0330]
gi|399900448|gb|EJN83418.1| 50S ribosomal protein L4 [Actinomyces naeslundii str. Howell 279]
Length = 214
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 97/162 (59%), Gaps = 5/162 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+ + L + V + + G + L +VFD P+ ++H+VV QLA +QGTH+TKT +V
Sbjct: 1 MTEALTVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
G G+KP+RQKGTGRAR G+ R PQF GG T+HGP+PR + + KK++ L+ ALS R
Sbjct: 61 RGGGRKPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYTQRTPKKMKAAALRSALSDR 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCD 253
A G++ V + VPS K + + + K +++ D
Sbjct: 121 ARNGRVHVITEFVTTAVPSTKNALVA--LRNLTDRKALVIVD 160
>gi|225621029|ref|YP_002722287.1| 50S ribosomal protein L4 [Brachyspira hyodysenteriae WA1]
gi|296126866|ref|YP_003634118.1| 50S ribosomal protein L4 [Brachyspira murdochii DSM 12563]
gi|384210011|ref|YP_005595731.1| 50S ribosomal protein L4 [Brachyspira intermedia PWS/A]
gi|254803718|sp|C0QVZ7.1|RL4_BRAHW RecName: Full=50S ribosomal protein L4
gi|225215849|gb|ACN84583.1| 50S ribosomal protein L4 [Brachyspira hyodysenteriae WA1]
gi|296018682|gb|ADG71919.1| ribosomal protein L4/L1e [Brachyspira murdochii DSM 12563]
gi|343387661|gb|AEM23151.1| 50S ribosomal protein L4 [Brachyspira intermedia PWS/A]
Length = 215
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 106/177 (59%), Gaps = 7/177 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + + N + G + + ++F + ++++ ++ +LA R+QGTHSTKT +EVSG G
Sbjct: 1 MEVVILNENGDSVGNLEIVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKPWRQKGTGRAR G+ R P + GG H PKPR ++ +L KK++R L LS +
Sbjct: 61 KKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPRDYSYRLPKKMKRKALLSVLSLKYGSN 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQME--NTKKVLLCDG-----GCIHEKLKLATQNL 268
L VFED + KTK + ++ ++++ NT+KV G G + KL L+ +N+
Sbjct: 121 VLKVFEDFTFDAPKTKRMASFISKVKEPNTRKVAFVVGKDESLGDNYNKLLLSLRNI 177
>gi|117924156|ref|YP_864773.1| 50S ribosomal protein L4P [Magnetococcus marinus MC-1]
gi|166234681|sp|A0L5X4.1|RL4_MAGSM RecName: Full=50S ribosomal protein L4
gi|117607912|gb|ABK43367.1| LSU ribosomal protein L4P [Magnetococcus marinus MC-1]
Length = 207
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 88/134 (65%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+PV + N++ L VF IR D++ V +QLAKR+ GT + S+V G GKK
Sbjct: 4 VPVKDANNQEVRSTELNESVFGREIRADLLGMAVNYQLAKRRLGTATVLGRSDVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTG AR GT+R PQFR G + GP+ R ++ KLNKKVR+L L+ ALS +A+ ++
Sbjct: 64 PYRQKGTGNARQGTIRAPQFRTGGIVFGPQQRDYSHKLNKKVRKLALQTALSVKASSEEM 123
Query: 221 LVFEDLEVPSHKTK 234
+V + LE+ S KTK
Sbjct: 124 VVVDKLELASIKTK 137
>gi|320160415|ref|YP_004173639.1| 50S ribosomal protein L4 [Anaerolinea thermophila UNI-1]
gi|319994268|dbj|BAJ63039.1| 50S ribosomal protein L4 [Anaerolinea thermophila UNI-1]
Length = 208
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+++ V N + + L +F+ PI D++H+ Q+A + GTH TKT +EVSG G
Sbjct: 1 MLVDVVNMQGQKVSSVELPESIFEAPIYIDLMHQAYVRQMANARLGTHDTKTRNEVSGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
+KPWRQKGTGRAR G+ R P + G +H P PRS+ + +K+RR L+ ALS +AAE
Sbjct: 61 RKPWRQKGTGRARQGSTRSPVWAKGAKVHTPHPRSYVQLMPRKMRRAALRSALSVKAAEN 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQM-ENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
++V + L +P KT+ + N + + ++L +E + +T+NL +L
Sbjct: 121 AIVVVDQLTLPEAKTRHMAQALNTLVGDASALVLIPEKEAYEGVIRSTRNLPDAKIL 177
>gi|70725804|ref|YP_252718.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435]
gi|82581594|sp|Q4L8B3.1|RL4_STAHJ RecName: Full=50S ribosomal protein L4
gi|68446528|dbj|BAE04112.1| 50S ribosomal protein L4 [Staphylococcus haemolyticus JCSC1435]
Length = 207
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E + ++ +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVKENNFTIVDNFGFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC-DGGCIHEKLKLATQNLHYVNV 273
KTK N +E KKVL+ D ++ ++L+ +N+ V V
Sbjct: 135 KTKEFKNVLTTLEQPKKVLVVTDSEDVN--VELSARNIPGVQV 175
>gi|307708061|ref|ZP_07644529.1| ribosomal protein L4/L1 family [Streptococcus mitis NCTC 12261]
gi|418977454|ref|ZP_13525272.1| 50S ribosomal protein L4 [Streptococcus mitis SK575]
gi|307615846|gb|EFN95051.1| ribosomal protein L4/L1 family [Streptococcus mitis NCTC 12261]
gi|383349895|gb|EID27812.1| 50S ribosomal protein L4 [Streptococcus mitis SK575]
Length = 207
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|161506874|ref|YP_001576828.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571]
gi|172048368|sp|A8YXK6.1|RL4_LACH4 RecName: Full=50S ribosomal protein L4
gi|160347863|gb|ABX26537.1| 50S ribosomal protein L4 [Lactobacillus helveticus DPC 4571]
Length = 205
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFETIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKMIDKDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK +V+ N + KVL+ ++L+ +NL V +P
Sbjct: 124 IVLDKLAMSAPKTKDLVSMLNSLNVDGKVLIV---SDDNNVQLSARNLAKVKAVP 175
>gi|404443138|ref|ZP_11008311.1| 50S ribosomal protein L4 [Mycobacterium vaccae ATCC 25954]
gi|403656052|gb|EJZ10876.1| 50S ribosomal protein L4 [Mycobacterium vaccae ATCC 25954]
Length = 222
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 107/182 (58%), Gaps = 7/182 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L I V + + G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG G
Sbjct: 3 LKIDVRSPGGKTDGSIELPAELFDVEPNIALMHQVVNAQLAAKRQGTHSTKTRGEVSGGG 62
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG +HGPKPR ++ + KK+ R L+ ALS RA
Sbjct: 63 KKPYRQKGTGRARQGSTRAPQFTGGGIVHGPKPRDYSERTPKKMIRAALRSALSDRARND 122
Query: 219 KLLVFEDL---EVPSHKT--KFIVNYY-NQMENTKKVLLCDGGCIHEKLKLATQNLHYVN 272
++ +L + PS K+ F+ ++ KVL+ G E L+ +NL V+
Sbjct: 123 RIHAVTELIEGQTPSTKSAKSFLSTLLADRAAGNNKVLVVIGRA-DEASALSVRNLPGVH 181
Query: 273 VL 274
V+
Sbjct: 182 VI 183
>gi|355755440|gb|EHH59187.1| hypothetical protein EGM_09241 [Macaca fascicularis]
Length = 296
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 101/186 (54%), Gaps = 7/186 (3%)
Query: 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSG 156
Q V + F E G L DVF R DI+H+V WQ ++ TKT +EV G
Sbjct: 65 QAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAEVRG 124
Query: 157 TGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARA 215
G+KPW QKGTGRARHG++R P +RGG HGP+ P S+ L KVR LGLK+ALS +
Sbjct: 125 GGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALSIKL 184
Query: 216 AEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL----ATQNLHYV 271
A+ L + + LE+P+ +++ VLL D +E++ AT L
Sbjct: 185 AQDDLHIMDSLELPTRDPQYLTELARYRRWGDSVLLVD--LTYEEMPQSIVEATSRLKTF 242
Query: 272 NVLPSV 277
N++P+V
Sbjct: 243 NLIPAV 248
>gi|329768274|ref|ZP_08259775.1| 50S ribosomal protein L4 [Gemella haemolysans M341]
gi|328837473|gb|EGF87102.1| 50S ribosomal protein L4 [Gemella haemolysans M341]
Length = 207
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + F +D G + + VF + + ++ + V Q A +QGTH TK SEVSG
Sbjct: 1 MPQLDLFKQDGTKVGAVEASEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ K+ +K+RRL L+ ALS++ A
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
++ E L + KTK + + KKVL
Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFV 155
>gi|182412050|ref|YP_001817116.1| 50S ribosomal protein L4 [Opitutus terrae PB90-1]
gi|177839264|gb|ACB73516.1| ribosomal protein L4/L1e [Opitutus terrae PB90-1]
Length = 210
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 95/172 (55%), Gaps = 17/172 (9%)
Query: 82 LKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKR 141
+K TV +PD T QD +P F DKG + K++I + A
Sbjct: 1 MKLTVFSPDATKSTEQDFTLPT---FEGDKGLQAV----------KEVIVAIN----ANN 43
Query: 142 QQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKK 201
+QGTHSTKT EV G GKKPWRQKGTGRAR G++R P + GG + GPKPR ++ K+N K
Sbjct: 44 RQGTHSTKTRGEVRGGGKKPWRQKGTGRARAGSIRSPLWGGGGVVFGPKPRDYSKKINAK 103
Query: 202 VRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD 253
V++L AL RA+ G++ V E + + KTK ++ KVLL D
Sbjct: 104 VKQLAFSRALFDRASAGEIAVIEAFDSKATKTKAFNQILGRIAPKGKVLLVD 155
>gi|195386106|ref|XP_002051745.1| GJ17161 [Drosophila virilis]
gi|194148202|gb|EDW63900.1| GJ17161 [Drosophila virilis]
Length = 298
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 92/167 (55%), Gaps = 2/167 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G M L DVF R DII + WQ R TKT +EV G G+KPW QKG GRAR
Sbjct: 83 GLMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVRGGGRKPWPQKGMGRAR 142
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P F+GG +HGP+ P SH L R LGL LS + A+ L + E++E+P+
Sbjct: 143 HGSIRSPLFKGGGVVHGPRSPTSHFYMLPFYKRVLGLTSTLSVKLAQDDLHIIENVEIPT 202
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIH-EKLKLATQNLHYVNVLPS 276
+FI + + VL+ D I E + AT L YVN++P+
Sbjct: 203 RDAQFIKDLIQERNWGPSVLIIDKQDIFPENICYATDTLGYVNLMPA 249
>gi|125716986|ref|YP_001034119.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK36]
gi|323350941|ref|ZP_08086599.1| 50S ribosomal protein L4 [Streptococcus sanguinis VMC66]
gi|401681287|ref|ZP_10813191.1| 50S ribosomal protein L4 [Streptococcus sp. AS14]
gi|422822937|ref|ZP_16871126.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK405]
gi|422825093|ref|ZP_16873272.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK678]
gi|422847985|ref|ZP_16894668.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK72]
gi|422850348|ref|ZP_16897018.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK150]
gi|422857191|ref|ZP_16903841.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1057]
gi|422861232|ref|ZP_16907874.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK330]
gi|422863734|ref|ZP_16910364.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK408]
gi|422864721|ref|ZP_16911346.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1058]
gi|422877761|ref|ZP_16924231.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1056]
gi|422880429|ref|ZP_16926892.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1059]
gi|422883160|ref|ZP_16929609.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK49]
gi|422929858|ref|ZP_16962798.1| 50S ribosomal protein L4 [Streptococcus sanguinis ATCC 29667]
gi|422930558|ref|ZP_16963489.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK340]
gi|166199916|sp|A3CK64.1|RL4_STRSV RecName: Full=50S ribosomal protein L4
gi|125496903|gb|ABN43569.1| 50S ribosomal protein L4, putative [Streptococcus sanguinis SK36]
gi|322122923|gb|EFX94629.1| 50S ribosomal protein L4 [Streptococcus sanguinis VMC66]
gi|324991816|gb|EGC23741.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK405]
gi|324996294|gb|EGC28202.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK678]
gi|325686406|gb|EGD28436.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK72]
gi|325695809|gb|EGD37706.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK150]
gi|327463722|gb|EGF10038.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1057]
gi|327467336|gb|EGF12836.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK330]
gi|327471741|gb|EGF17182.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK408]
gi|327490462|gb|EGF22244.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1058]
gi|332358878|gb|EGJ36700.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1056]
gi|332363752|gb|EGJ41532.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK49]
gi|332364033|gb|EGJ41811.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1059]
gi|339613690|gb|EGQ18421.1| 50S ribosomal protein L4 [Streptococcus sanguinis ATCC 29667]
gi|339621343|gb|EGQ25906.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK340]
gi|400187084|gb|EJO21286.1| 50S ribosomal protein L4 [Streptococcus sp. AS14]
Length = 207
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDTKVLVILEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|404330450|ref|ZP_10970898.1| 50S ribosomal protein L4 [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 207
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L V+ + + ++++ V Q A ++QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GNVDLPDSVYGIEPNEHVLYQAVVMQQASQRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+ GG T+ GP PRS+A KL KKVRRL ++ ALS + L+V ++L++ +
Sbjct: 75 QGSIRSPQWVGGGTVFGPTPRSYAYKLPKKVRRLAIRSALSDKVGTSDLIVLDNLKLDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
KTK V + ++K L + L+ +N+ V VL S
Sbjct: 135 KTKEFVTVLKNLSVSEKALFVTNEA-DPAVALSARNIPGVKVLTS 178
>gi|21909577|ref|NP_663845.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS315]
gi|342179199|sp|P0DE54.1|RL4_STRP3 RecName: Full=50S ribosomal protein L4
gi|21903758|gb|AAM78648.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS315]
Length = 207
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKV 142
Query: 240 YNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+ + +TK ++L + G +E L+ +NL V V + S
Sbjct: 143 LSALSIDTKVLVLVEEG--NEFAALSARNLPNVTVATAATAS 182
>gi|422822250|ref|ZP_16870443.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK353]
gi|422852763|ref|ZP_16899427.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK160]
gi|324990001|gb|EGC21942.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK353]
gi|325697977|gb|EGD39860.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK160]
Length = 207
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDTVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDTKVLVILEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|420157782|ref|ZP_14664610.1| 50S ribosomal protein L4 [Clostridium sp. MSTE9]
gi|394755610|gb|EJF38809.1| 50S ribosomal protein L4 [Clostridium sp. MSTE9]
Length = 207
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 94/152 (61%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + ++ G + L+ VF + ++H +V+ LA ++QGT S T SEV+G G+K
Sbjct: 4 VAVLDMAGKEVGQIELSEAVFGIEPNVAVMHELVKNYLANQRQGTQSALTRSEVAGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ+R G + PKPR + +NKKVRRL +K A S++ + ++
Sbjct: 64 PWRQKGTGHARQGSIRAPQWRHGGVVFAPKPRDYRYTVNKKVRRLAMKSAFSSKVIDNEI 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+V + + + +KTK IV+ + KK L+
Sbjct: 124 VVLDQIAMDEYKTKVIVSMLQALGAEKKALIV 155
>gi|329945685|ref|ZP_08293415.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 170 str.
F0386]
gi|343521953|ref|ZP_08758919.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 175 str.
F0384]
gi|328528493|gb|EGF55467.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 170 str.
F0386]
gi|343401362|gb|EGV13868.1| 50S ribosomal protein L4 [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 214
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 97/162 (59%), Gaps = 5/162 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+ + L + V + + G + L +VFD P+ ++H+VV QLA +QGTH+TKT +V
Sbjct: 1 MTEALTVDVVDSAGKKTGSVELPAEVFDAPLNIPLMHQVVVGQLAAARQGTHATKTRGDV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
G G+KP+RQKGTGRAR G+ R PQF GG T+HGP+PR + + KK++ L+ ALS R
Sbjct: 61 RGGGRKPYRQKGTGRARQGSTRAPQFVGGGTVHGPQPRDYTQRTPKKMKAAALRSALSDR 120
Query: 215 AAEGKLLV---FEDLEVPSHKTKFIVNYYNQMENTKKVLLCD 253
A G++ V F VPS K + + + K +++ D
Sbjct: 121 ARNGRVHVITEFVTTTVPSTKNALVA--LRNLTDRKALVIVD 160
>gi|312866536|ref|ZP_07726753.1| 50S ribosomal protein L4 [Streptococcus downei F0415]
gi|311097967|gb|EFQ56194.1| 50S ribosomal protein L4 [Streptococcus downei F0415]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 92/156 (58%), Gaps = 5/156 (3%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 VFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+A K +KVRRL LK LSA+ AE KL+ + L + KT
Sbjct: 83 WRGGGVVFGPTPRSYAYKFPQKVRRLALKSVLSAKVAEEKLVAVDALSFAAPKTAEFAKV 142
Query: 240 YNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNV 273
+ KVL L +G +E L+ +NL V V
Sbjct: 143 LKALSIDSKVLVVLEEG---NEVAALSARNLPNVAV 175
>gi|383479251|ref|YP_005388145.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS15252]
gi|383493175|ref|YP_005410851.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS1882]
gi|378927241|gb|AFC65447.1| LSU ribosomal protein (L4p) RplD [Streptococcus pyogenes MGAS15252]
gi|378928903|gb|AFC67320.1| LSU ribosomal protein (L4p) RplD [Streptococcus pyogenes MGAS1882]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKV 142
Query: 240 YNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+ + +TK ++L + G +E L+ +NL V V + S
Sbjct: 143 LSALSIDTKVLVLVEEG--NEFAALSARNLPNVTVATAATAS 182
>gi|417933024|ref|ZP_12576358.1| 50S ribosomal protein L4 [Propionibacterium acnes SK182B-JCVI]
gi|340772943|gb|EGR95438.1| 50S ribosomal protein L4 [Propionibacterium acnes SK182B-JCVI]
Length = 301
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GDVFD +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDVFDANTNIPLIHQVVIAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS TK + + +KVL+ E L+ +NL V
Sbjct: 121 ARDNRIFVVTSLVDGDKPS--TKQAKAMLSSLTELRKVLVVLDRS-DEIDWLSVRNLSEV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|330470172|ref|YP_004407915.1| 50S ribosomal protein L4 [Verrucosispora maris AB-18-032]
gi|328813143|gb|AEB47315.1| 50S ribosomal protein L4 [Verrucosispora maris AB-18-032]
Length = 216
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 94/155 (60%), Gaps = 5/155 (3%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N G + L GD+FDV ++H+VV QLA +QGTH TKT EVSG GKK
Sbjct: 4 VDVLNSEGTKTGSVELPGDIFDVQANVPLMHQVVVAQLAAARQGTHKTKTRGEVSGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P++QKGTGRAR G++R PQF GG +HGP PR ++ + KK++ L+ ALS RA G++
Sbjct: 64 PYKQKGTGRARQGSIRAPQFAGGGVVHGPVPRDYSQRTPKKMKAAALRGALSDRARAGQV 123
Query: 221 LVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLC 252
V E E PS TK + ++ ++VL+
Sbjct: 124 HVVEAFVSGEKPS--TKAALAALTKVTEARRVLVV 156
>gi|422856366|ref|ZP_16903023.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1]
gi|327458432|gb|EGF04788.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK1]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDTKVLVILEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|293364346|ref|ZP_06611072.1| 50S ribosomal protein L4 [Streptococcus oralis ATCC 35037]
gi|307702687|ref|ZP_07639639.1| 50S ribosomal protein L4 (BL4) [Streptococcus oralis ATCC 35037]
gi|307704066|ref|ZP_07640995.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK597]
gi|419781973|ref|ZP_14307784.1| 50S ribosomal protein L4 [Streptococcus oralis SK610]
gi|291317192|gb|EFE57619.1| 50S ribosomal protein L4 [Streptococcus oralis ATCC 35037]
gi|307622356|gb|EFO01364.1| 50S ribosomal protein L4 (BL4) [Streptococcus mitis SK597]
gi|307623803|gb|EFO02788.1| 50S ribosomal protein L4 (BL4) [Streptococcus oralis ATCC 35037]
gi|383183614|gb|EIC76149.1| 50S ribosomal protein L4 [Streptococcus oralis SK610]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 101/180 (56%), Gaps = 9/180 (5%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGQVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+ KL +KVRRL LK S + AE K + + LE
Sbjct: 72 RARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|34811556|pdb|1PNU|C Chain C, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
gi|34811609|pdb|1PNY|C Chain C, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx
Length = 197
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 97/153 (63%), Gaps = 5/153 (3%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
+ ++H VV WQLA R++GT ST+T ++VS TG+K + QKGTG ARHG P F GG
Sbjct: 21 VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGG 80
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ-- 242
GPKPRS+ L ++VR+LGL +A+++R GKL+ + ++ KTK +++ Q
Sbjct: 81 VAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNG 140
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ T+KVLL E + A +N+ +V+VLP
Sbjct: 141 LDGTEKVLLV---TDDENTRRAARNVSWVSVLP 170
>gi|15805341|ref|NP_294035.1| 50S ribosomal protein L4 [Deinococcus radiodurans R1]
gi|45477175|sp|Q9RXK1.3|RL4_DEIRA RecName: Full=50S ribosomal protein L4
gi|16975049|pdb|1JZX|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|16975053|pdb|1JZY|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|16975057|pdb|1JZZ|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|16975065|pdb|1K01|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|20150343|pdb|1J5A|K Chain K, Structural Basis For The Interaction Of Antibiotics With
The Peptidyl Transferase Center In Eubacteria
gi|28948922|pdb|1NKW|C Chain C, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
gi|51247375|pdb|1SM1|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
gi|190613492|pdb|2ZJP|C Chain C, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
gi|190613522|pdb|2ZJQ|C Chain C, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
gi|190613553|pdb|2ZJR|C Chain C, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
gi|190613660|pdb|3CF5|C Chain C, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
gi|203282459|pdb|3DLL|C Chain C, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
gi|323714543|pdb|3PIO|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
gi|323714573|pdb|3PIP|C Chain C, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
gi|6457986|gb|AAF09893.1|AE001892_4 ribosomal protein L4 [Deinococcus radiodurans R1]
Length = 205
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 101/164 (61%), Gaps = 8/164 (4%)
Query: 117 AGDVFDVP---IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
G ++P + ++H VV WQLA R++GT ST+T ++VS TG+K + QKGTG ARHG
Sbjct: 11 GGRTIELPLPEVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHG 70
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
P F GG GPKPRS+ L ++VR+LGL +A+++R GKL+ + ++ KT
Sbjct: 71 DRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKT 130
Query: 234 KFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
K +++ Q ++ T+KVLL E + A +N+ +V+VLP
Sbjct: 131 KNFISWAKQNGLDGTEKVLLV---TDDENTRRAARNVSWVSVLP 171
>gi|296168558|ref|ZP_06850362.1| 50S ribosomal protein L4 [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896621|gb|EFG76260.1| 50S ribosomal protein L4 [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 217
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/167 (42%), Positives = 100/167 (59%), Gaps = 6/167 (3%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
+G + L ++FD P ++H+VV Q A +QGTHSTKT EVSG G+KP+RQKGTGRA
Sbjct: 15 EGSIELPAELFDAPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRA 74
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---E 227
R G+ R PQF GG +HGPKPR +A + KK+ L+ ALS RA G++ ++ +
Sbjct: 75 RQGSTRAPQFTGGGVVHGPKPRDYAQRTPKKMIAAALRGALSDRARNGRIHAVTEIVAGQ 134
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
PS TK + + + KKVL+ G K + +NL V++L
Sbjct: 135 TPS--TKNARAFLGTLTDRKKVLIVIGRSDEAGAK-SVRNLPGVHIL 178
>gi|406666921|ref|ZP_11074684.1| 50S ribosomal protein L4 [Bacillus isronensis B3W22]
gi|405385204|gb|EKB44640.1| 50S ribosomal protein L4 [Bacillus isronensis B3W22]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ V Q A +QG H K S V+G G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSAVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALSA+ E L+V + L +
Sbjct: 75 QGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSAKVLEQNLVVLDALSFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK + +E +KK L ++E L+ +N+ V VL
Sbjct: 135 KTKDFKSVLAALEISKKALFVT-AEVNENAILSARNIPGVTVL 176
>gi|227876214|ref|ZP_03994330.1| ribosomal protein L4 [Mobiluncus mulieris ATCC 35243]
gi|269976880|ref|ZP_06183854.1| ribosomal protein L4/L1 family [Mobiluncus mulieris 28-1]
gi|306819490|ref|ZP_07453197.1| ribosomal protein L4/L1 family protein [Mobiluncus mulieris ATCC
35239]
gi|307701215|ref|ZP_07638237.1| 50S ribosomal protein L4 [Mobiluncus mulieris FB024-16]
gi|227843175|gb|EEJ53368.1| ribosomal protein L4 [Mobiluncus mulieris ATCC 35243]
gi|269934711|gb|EEZ91271.1| ribosomal protein L4/L1 family [Mobiluncus mulieris 28-1]
gi|304647782|gb|EFM45100.1| ribosomal protein L4/L1 family protein [Mobiluncus mulieris ATCC
35239]
gi|307613609|gb|EFN92856.1| 50S ribosomal protein L4 [Mobiluncus mulieris FB024-16]
Length = 214
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + + G + L G+VFD+ + ++H+VV QLA +QGTH+TKT +VSG GKK
Sbjct: 7 IDVLDGAGKKTGTVELPGEVFDLELNVPLLHQVVNAQLAAARQGTHATKTRGDVSGGGKK 66
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R PQF GG +HGP+PR + K KK++ L+ ALS RA ++
Sbjct: 67 PYRQKGTGRARQGSIRAPQFTGGGIVHGPQPRDYTQKTPKKMKAAALRQALSDRARANRV 126
Query: 221 LVFEDL---EVPSHKT 233
V D + PS K
Sbjct: 127 HVLSDFGVKDAPSTKA 142
>gi|15674288|ref|NP_268461.1| 50S ribosomal protein L4 [Streptococcus pyogenes SF370]
gi|19745242|ref|NP_606378.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS8232]
gi|28894955|ref|NP_801305.1| 50S ribosomal protein L4 [Streptococcus pyogenes SSI-1]
gi|50913440|ref|YP_059412.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS10394]
gi|71902710|ref|YP_279513.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS6180]
gi|71909859|ref|YP_281409.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS5005]
gi|94987676|ref|YP_595777.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS9429]
gi|139472928|ref|YP_001127643.1| 50S ribosomal protein L4 [Streptococcus pyogenes str. Manfredo]
gi|251781516|ref|YP_002995817.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|306828259|ref|ZP_07461519.1| ribosomal protein L4/L1 family protein [Streptococcus pyogenes ATCC
10782]
gi|386316025|ref|YP_006012189.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|386361924|ref|YP_006071255.1| 50S ribosomal protein L4 [Streptococcus pyogenes Alab49]
gi|392330392|ref|ZP_10275007.1| 50S ribosomal protein L4 [Streptococcus canis FSL Z3-227]
gi|408400792|ref|YP_006858755.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410493814|ref|YP_006903660.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|410679737|ref|YP_006932139.1| 50S ribosomal protein L4 [Streptococcus pyogenes A20]
gi|417751859|ref|ZP_12400116.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|417855913|ref|ZP_12500972.1| 50S ribosomal protein L4 [Streptococcus pyogenes HKU QMH11M0907901]
gi|421893089|ref|ZP_16323658.1| LSU ribosomal protein L4p (L1e) [Streptococcus pyogenes NS88.2]
gi|46396575|sp|P60831.1|RL4_STRP8 RecName: Full=50S ribosomal protein L4
gi|73917536|sp|Q5XED4.1|RL4_STRP6 RecName: Full=50S ribosomal protein L4
gi|76363882|sp|P0C0D5.1|RL4_STRPY RecName: Full=50S ribosomal protein L4
gi|81171140|sp|P0C0D6.1|RL4_STRP1 RecName: Full=50S ribosomal protein L4
gi|109893643|sp|Q48VU8.1|RL4_STRPM RecName: Full=50S ribosomal protein L4
gi|166199912|sp|Q1JP16.1|RL4_STRPC RecName: Full=50S ribosomal protein L4
gi|166199913|sp|Q1JJ61.1|RL4_STRPD RecName: Full=50S ribosomal protein L4
gi|166199914|sp|A2RC15.1|RL4_STRPG RecName: Full=50S ribosomal protein L4
gi|342179200|sp|P0DE55.1|RL4_STRPQ RecName: Full=50S ribosomal protein L4
gi|13621368|gb|AAK33183.1| 50S ribosomal protein L4 [Streptococcus pyogenes M1 GAS]
gi|19747336|gb|AAL96877.1| 50S ribosomal protein L4 [Streptococcus pyogenes MGAS8232]
gi|28475247|emb|CAD67589.1| ribosomal protein L4 [Streptococcus pyogenes]
gi|28810200|dbj|BAC63138.1| 50S ribosomal protein L4 [Streptococcus pyogenes SSI-1]
gi|50902514|gb|AAT86229.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS10394]
gi|71801805|gb|AAX71158.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS6180]
gi|71852641|gb|AAZ50664.1| LSU ribosomal protein L1E [Streptococcus pyogenes MGAS5005]
gi|94541184|gb|ABF31233.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS9429]
gi|94543064|gb|ABF33112.1| LSU ribosomal protein L1E (L4P) [Streptococcus pyogenes MGAS10270]
gi|134271174|emb|CAM29387.1| 50S ribosomal protein L4 [Streptococcus pyogenes str. Manfredo]
gi|242390144|dbj|BAH80603.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|304429570|gb|EFM32619.1| ribosomal protein L4/L1 family protein [Streptococcus pyogenes ATCC
10782]
gi|323126312|gb|ADX23609.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333772358|gb|EGL49214.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|350276333|gb|AEQ23701.1| 50S ribosomal protein L4 [Streptococcus pyogenes Alab49]
gi|379981143|emb|CCG27380.1| LSU ribosomal protein L4p (L1e) [Streptococcus pyogenes NS88.2]
gi|387932868|gb|EIK40981.1| 50S ribosomal protein L4 [Streptococcus pyogenes HKU QMH11M0907901]
gi|391418071|gb|EIQ80883.1| 50S ribosomal protein L4 [Streptococcus canis FSL Z3-227]
gi|395453087|dbj|BAM29426.1| 50S ribosomal protein L4 [Streptococcus pyogenes M1 476]
gi|407967020|dbj|BAM60258.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|409692326|gb|AFV37186.1| 50S ribosomal protein L4 [Streptococcus pyogenes A20]
gi|410438974|emb|CCI61602.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKV 142
Query: 240 YNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+ + +TK ++L + G +E L+ +NL V V + S
Sbjct: 143 LSALSIDTKVLVLVEEG--NEFAALSARNLPNVTVATAATAS 182
>gi|312140917|ref|YP_004008253.1| 50S ribosomal protein l4 rpld [Rhodococcus equi 103S]
gi|325675445|ref|ZP_08155129.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707]
gi|311890256|emb|CBH49574.1| 50S ribosomal protein L4 RplD [Rhodococcus equi 103S]
gi|325553416|gb|EGD23094.1| 50S ribosomal protein L4 [Rhodococcus equi ATCC 33707]
Length = 221
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 5/159 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V + G + L ++FD ++H+VV QLA +QGTHSTKT EV G G
Sbjct: 8 LTLDVKAAGGKTNGTVDLPSEIFDATANIALMHQVVVAQLAAARQGTHSTKTRGEVRGGG 67
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 68 KKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 127
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDG 254
++ V +L +VPS TK ++ ++ + KK LL G
Sbjct: 128 RIHVITELVAGQVPS--TKTAKSFLGELSDRKKFLLVVG 164
>gi|441516755|ref|ZP_20998500.1| 50S ribosomal protein L4 [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441456376|dbj|GAC56461.1| 50S ribosomal protein L4 [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 219
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
+G + L D+FDV ++H+VV Q A +QGTHSTKT EV G G KP+RQKGTGRA
Sbjct: 21 EGTVQLPADLFDVTANIALMHQVVVAQQAAGRQGTHSTKTRGEVRGGGVKPYRQKGTGRA 80
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVP 229
R G++R PQF GG T+HGP+PR ++ K+NKK++ L+ ALS RA ++ +V E ++
Sbjct: 81 RQGSIRSPQFVGGGTVHGPQPRDYSQKVNKKMKAAALRGALSDRARNERIHVVTELVQGQ 140
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYV 271
S TK + Q+ + +K V+L K QN+H +
Sbjct: 141 SPSTKSARTFLEQISDRRKFLVVLSREDDAARKSIANLQNVHAI 184
>gi|319945834|ref|ZP_08020084.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641]
gi|417919410|ref|ZP_12562941.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641]
gi|319747899|gb|EFW00143.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641]
gi|342832791|gb|EGU67080.1| 50S ribosomal protein L4 [Streptococcus australis ATCC 700641]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|56966348|pdb|1VOR|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966401|pdb|1VOU|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966454|pdb|1VOW|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966507|pdb|1VOY|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
gi|56966560|pdb|1VP0|F Chain F, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 198
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 97/153 (63%), Gaps = 5/153 (3%)
Query: 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGT 184
+ ++H VV WQLA R++GT ST+T ++VS TG+K + QKGTG ARHG P F GG
Sbjct: 22 VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVGGG 81
Query: 185 TMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ-- 242
GPKPRS+ L ++VR+LGL +A+++R GKL+ + ++ KTK +++ Q
Sbjct: 82 VAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNG 141
Query: 243 MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ T+KVLL E + A +N+ +V+VLP
Sbjct: 142 LDGTEKVLLV---TDDENTRRAARNVSWVSVLP 171
>gi|375091979|ref|ZP_09738266.1| 50S ribosomal protein L4 [Helcococcus kunzii ATCC 51366]
gi|374562197|gb|EHR33529.1| 50S ribosomal protein L4 [Helcococcus kunzii ATCC 51366]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 89/133 (66%), Gaps = 3/133 (2%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F I + +++ VV+ QLA ++QGT S KT +EV G GKKPWRQKGTGRAR
Sbjct: 15 GNIDLPESLFGSEINEHVVYEVVKNQLANKRQGTQSAKTRAEVRGGGKKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R PQ+RGG T+ PKPR+++ + KKVRRL LK L+++ E +++V +L E+
Sbjct: 75 QGSIRSPQWRGGGTVFAPKPRNYSYTVPKKVRRLALKSLLTSKVVEEEIIVLNELNLSEI 134
Query: 229 PSHKTKFIVNYYN 241
+ + K I+ N
Sbjct: 135 STKEAKTILGAIN 147
>gi|116493162|ref|YP_804897.1| 50S ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745]
gi|421894155|ref|ZP_16324646.1| 50S ribosomal protein L4 [Pediococcus pentosaceus IE-3]
gi|122265374|sp|Q03EB7.1|RL4_PEDPA RecName: Full=50S ribosomal protein L4
gi|116103312|gb|ABJ68455.1| LSU ribosomal protein L4P [Pediococcus pentosaceus ATCC 25745]
gi|385272983|emb|CCG90018.1| 50S ribosomal protein L4 [Pediococcus pentosaceus IE-3]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 4/174 (2%)
Query: 104 TNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ F +D G + L D+F + D++ V Q A +QGTH+ K S V G G+K
Sbjct: 4 VSLFKQDGTKNGDVELNADIFGIEPNNDVVFEAVVMQRASMRQGTHAVKNRSAVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG + GP PRS+A + KK+RRL LK LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYAYSIPKKMRRLALKSVLSQKVLDESL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V ++ + + KTK + KK LL +E LA +NL V ++
Sbjct: 124 VVVDEFKFETPKTKDFAQSLGNLNVDKKALLVLEED-NESAVLAARNLSNVKIV 176
>gi|257431697|ref|ZP_05608060.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
E1410]
gi|257282576|gb|EEV12708.1| 50S ribosomal protein L4 [Staphylococcus aureus subsp. aureus
E1410]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 86/141 (60%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + ++ + Q A +QGTH+ K S VSG G+KPW+QKGTGRAR
Sbjct: 15 GSIELSDAVFGIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVSGGGRKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E L + + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYAYKMPKKMRRLALRSALSFKVQENGLTLVDAFNFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N + +E KKVL+
Sbjct: 135 KTKEFKNVLSTLEQPKKVLVV 155
>gi|157149830|ref|YP_001451234.1| 50S ribosomal protein L4 [Streptococcus gordonii str. Challis
substr. CH1]
gi|262283582|ref|ZP_06061347.1| ribosomal protein L4/L1 family protein [Streptococcus sp.
2_1_36FAA]
gi|189042889|sp|A8AZM4.1|RL4_STRGC RecName: Full=50S ribosomal protein L4
gi|157074624|gb|ABV09307.1| ribosomal protein L4/L1 family [Streptococcus gordonii str. Challis
substr. CH1]
gi|262260639|gb|EEY79340.1| ribosomal protein L4/L1 family protein [Streptococcus sp.
2_1_36FAA]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDTKVLVILEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|419419754|ref|ZP_13959987.1| ribosomal protein, L4/L1 family [Propionibacterium acnes PRP-38]
gi|422395713|ref|ZP_16475746.1| 50S ribosomal protein L4 [Propionibacterium acnes HL097PA1]
gi|327332710|gb|EGE74444.1| 50S ribosomal protein L4 [Propionibacterium acnes HL097PA1]
gi|379979475|gb|EIA12795.1| ribosomal protein, L4/L1 family [Propionibacterium acnes PRP-38]
Length = 301
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS K V + + +KVL+ E L+ +NL V
Sbjct: 121 ARDNRIFVVTSLVDGDKPSTKQAKAV--LSGLAELRKVLVVLDRS-DEIDWLSVRNLSEV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|297623275|ref|YP_003704709.1| 50S ribosomal protein L4 [Truepera radiovictrix DSM 17093]
gi|297164455|gb|ADI14166.1| ribosomal protein L4/L1e [Truepera radiovictrix DSM 17093]
Length = 216
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 95/149 (63%), Gaps = 4/149 (2%)
Query: 129 IIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHG 188
++H VV WQL+KR++GT +TKT VSGT K + QKGTGRARHG+ + P F GG G
Sbjct: 25 VLHEVVSWQLSKRRRGTAATKTRGTVSGTTAKMYPQKGTGRARHGSYKAPIFVGGGIAFG 84
Query: 189 PKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQ-MENTK 247
P+PRS+ L K+VRRLGLK+AL+ARA + KL + E + +F+ + + ++
Sbjct: 85 PQPRSYEYTLPKRVRRLGLKMALAARAQDNKLTLVEAFGIGGRTKEFVAWAKDHGFDGSE 144
Query: 248 KVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+VLL E + A +NL +V+VLPS
Sbjct: 145 RVLLV---TDDELARRAARNLPWVSVLPS 170
>gi|170759420|ref|YP_001788820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree]
gi|226730645|sp|B1KSM4.1|RL4_CLOBM RecName: Full=50S ribosomal protein L4
gi|169406409|gb|ACA54820.1| 50S ribosomal protein L4 [Clostridium botulinum A3 str. Loch Maree]
Length = 206
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 105/175 (60%), Gaps = 5/175 (2%)
Query: 104 TNFFN---EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ FN E G + LA VF V + +H+VV+ LA ++QGT S KT +EVSG G K
Sbjct: 4 VDLFNQNGEKVGDLQLADSVFGVEVNTYAMHQVVKALLANKRQGTQSAKTRAEVSGGGIK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+ G + PKPR + + + K ++++ +K AL+++ E +
Sbjct: 64 PWRQKGTGRARQGSIRAPQWIHGGIVFAPKPRDYRMSIPKSMKKVAIKSALTSKVNENLM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +++++ + KTK +V N N KK L+ E + + +N+ V ++P
Sbjct: 124 VVVDEIKLETPKTKEVVKMLNAF-NAKKTLIITNNA-EENVYKSARNIEGVQIIP 176
>gi|421239799|ref|ZP_15696352.1| 50S ribosomal protein L4 [Streptococcus pneumoniae 2080913]
gi|395610673|gb|EJG70749.1| 50S ribosomal protein L4 [Streptococcus pneumoniae 2080913]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 101/180 (56%), Gaps = 9/180 (5%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL+ VF + K ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGQVVLSDAVFGIEPNKSVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+ KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAENKFVAVDALSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|417928248|ref|ZP_12571636.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340766122|gb|EGR88648.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKV 142
Query: 240 YNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+ + +TK ++L + G +E L+ +NL V V + S
Sbjct: 143 LSALNIDTKVLVLVEEG--NEFAALSARNLPNVTVATAATAS 182
>gi|312867055|ref|ZP_07727266.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0405]
gi|322390661|ref|ZP_08064175.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 903]
gi|337283076|ref|YP_004622547.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 15912]
gi|387878656|ref|YP_006308959.1| 50S ribosomal protein L4 [Streptococcus parasanguinis FW213]
gi|414156632|ref|ZP_11412933.1| 50S ribosomal protein L4 [Streptococcus sp. F0442]
gi|419800160|ref|ZP_14325459.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0449]
gi|311097537|gb|EFQ55770.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0405]
gi|321142634|gb|EFX38098.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 903]
gi|335370669|gb|AEH56619.1| 50S ribosomal protein L4 [Streptococcus parasanguinis ATCC 15912]
gi|385696013|gb|EIG26536.1| 50S ribosomal protein L4 [Streptococcus parasanguinis F0449]
gi|386792113|gb|AFJ25148.1| Ribosomal protein L4 [Streptococcus parasanguinis FW213]
gi|410869625|gb|EKS17585.1| 50S ribosomal protein L4 [Streptococcus sp. F0442]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNQAVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|451943234|ref|YP_007463870.1| 50S ribosomal protein L4 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
gi|451902621|gb|AGF71508.1| 50S ribosomal protein L4 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
Length = 217
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 109/189 (57%), Gaps = 17/189 (8%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FD + ++H+VV QLA +QGTHSTKT SEVSG GKKP+RQKGTGRAR
Sbjct: 17 GQVDLPAEIFDREVSIALMHQVVNAQLAAARQGTHSTKTRSEVSGGGKKPFRQKGTGRAR 76
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G++R P F GG HGPKPR +A + KK++ L ALS RA G++ V +L +
Sbjct: 77 QGSIRAPHFAGGGISHGPKPRDYAQRTPKKMKSAALCGALSDRARNGRIHVITELVPGQD 136
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKL--KLATQNLHYVNVLPSVVRSTTQSFL 286
PS K+ + + ++ K VLL G E L + + NL V++L + S L
Sbjct: 137 PSTKSARV--FLERLTERKSVLLVVG---REDLNARRSANNLPGVHILEA-------SQL 184
Query: 287 IYYYFLDFD 295
Y L+ D
Sbjct: 185 NTYDVLNSD 193
>gi|410593768|ref|YP_006950495.1| 50S ribosomal protein L4 [Streptococcus agalactiae SA20-06]
gi|410517407|gb|AFV71551.1| 50S ribosomal protein L4 [Streptococcus agalactiae SA20-06]
Length = 207
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 98/169 (57%), Gaps = 9/169 (5%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLHQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E+L + KT +
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVENLSFAAPKTAEFASV 142
Query: 240 YNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ + KVL L +G +E L+ +NL V +V +TT S L
Sbjct: 143 LSALSIDSKVLVILEEG---NEFAALSARNLPNV----TVATATTASVL 184
>gi|29726790|pdb|1NWX|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
gi|29726821|pdb|1NWY|C Chain C, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
gi|61680338|pdb|1XBP|C Chain C, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
Length = 204
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 101/164 (61%), Gaps = 8/164 (4%)
Query: 117 AGDVFDVP---IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
G ++P + ++H VV WQLA R++GT ST+T ++VS TG+K + QKGTG ARHG
Sbjct: 10 GGRTIELPLPEVNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHG 69
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
P F GG GPKPRS+ L ++VR+LGL +A+++R GKL+ + ++ KT
Sbjct: 70 DRSVPTFVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKT 129
Query: 234 KFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
K +++ Q ++ T+KVLL E + A +N+ +V+VLP
Sbjct: 130 KNFISWAKQNGLDGTEKVLLV---TDDENTRRAARNVSWVSVLP 170
>gi|329770039|ref|ZP_08261434.1| 50S ribosomal protein L4 [Gemella sanguinis M325]
gi|328837350|gb|EGF86980.1| 50S ribosomal protein L4 [Gemella sanguinis M325]
Length = 207
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 94/155 (60%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNED--KGFMVLAGD-VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + F +D K V A D VF + + ++ + V Q A +QGTH TK SEVSG
Sbjct: 1 MPQLDLFKQDGTKVGAVEANDAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ K+ +K+RRL L+ ALS++ A
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
++ E L + KTK + + KKVL
Sbjct: 121 NEVFALETLAFDTIKTKNFKEMLSNLSLEKKVLFV 155
>gi|334326371|ref|XP_001367717.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Monodelphis domestica]
Length = 293
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G L DVF V R DI+H V WQ ++ TKT +EV G G+KPWRQKG+GRAR
Sbjct: 78 GLADLHPDVFAVAPRLDILHDVAMWQKNFKRISYAKTKTRAEVRGGGRKPWRQKGSGRAR 137
Query: 172 HGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPS 230
HG++R P +RGG HGP+ P S+ L KVR LGLK+AL+ + + L + + LE+P+
Sbjct: 138 HGSIRSPIWRGGGVAHGPRGPTSYYYMLPMKVRVLGLKVALTVKLMQDDLHIVDSLELPT 197
Query: 231 HKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSV 277
+++++ VLL D + + + A NL +N++P+V
Sbjct: 198 SDPRYLLDLVRHRYWGDSVLLVDVDEEMPQNIVSAVSNLKTINLVPAV 245
>gi|160914558|ref|ZP_02076773.1| hypothetical protein EUBDOL_00564 [Eubacterium dolichum DSM 3991]
gi|158433716|gb|EDP12005.1| 50S ribosomal protein L4 [Eubacterium dolichum DSM 3991]
Length = 209
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 99/181 (54%), Gaps = 17/181 (9%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ LA VF + + I + Q A +QGTH TK +EVSG G+KPWRQKGTGRAR G
Sbjct: 17 ITLADSVFGIEPNQQCIFDAIVMQRASVRQGTHDTKNRTEVSGGGRKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R Q+RGG + GP PRS++ KLNKKVRRL LK LS + E + V + E+ KT
Sbjct: 77 SIRATQWRGGGIVFGPTPRSYSYKLNKKVRRLALKSVLSEKVLENAMSVVDKFELAEPKT 136
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNV------LPSVVRSTTQSFLI 287
K +NQ ++ D + L + ++N + N +P+++ T +
Sbjct: 137 K----AFNQ-------IIADINAPKKTLFVVSENEDFENAFLSMRNIPTMMMLTADGINV 185
Query: 288 Y 288
Y
Sbjct: 186 Y 186
>gi|150020846|ref|YP_001306200.1| 50S ribosomal protein L4 [Thermosipho melanesiensis BI429]
gi|166199920|sp|A6LLL4.1|RL4_THEM4 RecName: Full=50S ribosomal protein L4
gi|149793367|gb|ABR30815.1| ribosomal protein L4/L1e [Thermosipho melanesiensis BI429]
Length = 221
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 107/191 (56%), Gaps = 7/191 (3%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
N E+ G + L +VF + +D++ R + QL + GT STKT EVSG G+KPW Q
Sbjct: 8 NIKGENIGTVELKEEVFAIEPNQDVMWRYIDMQLTNSRAGTASTKTRGEVSGGGRKPWIQ 67
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE 224
K TGRAR G++R P +R G HGPKPR + +LNKK++RL LK ALS R E L+V +
Sbjct: 68 KHTGRARQGSIRAPHWRHGGVAHGPKPRVYFKRLNKKMKRLALKSALSLRLKENNLVVVD 127
Query: 225 DLEVPSHKTKFIVNYYNQ--MENTKK-VLLCDGGCIHEKLKLATQNLHYVNVL----PSV 277
D++ +TK + +EN K ++L +E +K++ +N+ V VL P V
Sbjct: 128 DIKFEKPRTKDLREVLKNLGLENQKVLIVLPKKESEYENVKISGRNIPGVKVLIADNPGV 187
Query: 278 VRSTTQSFLIY 288
R +Y
Sbjct: 188 DRVNIDGLNVY 198
>gi|289424792|ref|ZP_06426574.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
SK187]
gi|289154755|gb|EFD03438.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
SK187]
Length = 301
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS K V + + +KVL+ E L+ +NL V
Sbjct: 121 ARDNRMFVVTSLVDGDKPSTKQAKAV--LSGLAELRKVLVVLDRS-DEIDWLSVRNLSEV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|223983922|ref|ZP_03634082.1| hypothetical protein HOLDEFILI_01363 [Holdemania filiformis DSM
12042]
gi|223964114|gb|EEF68466.1| hypothetical protein HOLDEFILI_01363 [Holdemania filiformis DSM
12042]
Length = 209
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFN-EDKGF--MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N +N E K + LA VF + + ++ + Q A +QGTH TK+ EVSG
Sbjct: 1 MPKLNVYNLEAKEIREIELAEAVFGIEPNQQVMFDALIMQRANMRQGTHDTKSRHEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+RGG GP PRS+A +LN+KVRRL L+ LS + E
Sbjct: 61 GKKPWRQKGTGRARQGSIRAPQWRGGGIAFGPTPRSYAYRLNRKVRRLALRSLLSEKVIE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
L+V + L+ + KTK V + + K L
Sbjct: 121 NNLVVVDALKFDAIKTKEFVKVMDAFKFEGKTLFV 155
>gi|340625722|ref|YP_004744174.1| putative 50S ribosomal protein L4 RPLD [Mycobacterium canettii CIPT
140010059]
gi|433625795|ref|YP_007259424.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140060008]
gi|433629786|ref|YP_007263414.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070010]
gi|433633735|ref|YP_007267362.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070017]
gi|433640825|ref|YP_007286584.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070008]
gi|340003912|emb|CCC43046.1| putative 50S ribosomal protein L4 RPLD [Mycobacterium canettii CIPT
140010059]
gi|432153401|emb|CCK50623.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140060008]
gi|432157373|emb|CCK54651.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070008]
gi|432161379|emb|CCK58721.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070010]
gi|432165328|emb|CCK62803.1| Putative 50S ribosomal protein L4 RplD [Mycobacterium canettii CIPT
140070017]
Length = 223
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 2/164 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG G+KP+RQKGTGRAR
Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA G++ V E +E +
Sbjct: 82 QGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVEGQN 141
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
TK + + K+VL+ G K + +NL V++L
Sbjct: 142 PSTKSARAFLASLTERKQVLVVIGRSDEAGAK-SVRNLPGVHIL 184
>gi|225020387|ref|ZP_03709579.1| hypothetical protein CORMATOL_00394 [Corynebacterium matruchotii
ATCC 33806]
gi|305679737|ref|ZP_07402547.1| 50S ribosomal protein L4 [Corynebacterium matruchotii ATCC 14266]
gi|224946776|gb|EEG27985.1| hypothetical protein CORMATOL_00394 [Corynebacterium matruchotii
ATCC 33806]
gi|305660357|gb|EFM49854.1| 50S ribosomal protein L4 [Corynebacterium matruchotii ATCC 14266]
Length = 216
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 5/159 (3%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V G + L ++FD + ++H+VV QLA R+QGTHSTKT EV G G
Sbjct: 4 LTLDVQTAAGSTAGQVELPAEIFDREVSISLLHQVVNAQLAARRQGTHSTKTRGEVRGGG 63
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTGRAR G++R P F GG HGPKPR+++ + KK+ + L ALS RA
Sbjct: 64 KKPFRQKGTGRARQGSIRAPHFTGGGISHGPKPRNYSQRTPKKMIKAALYGALSDRARHA 123
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDG 254
++ V ++L + PS TK + + +++ + KK+L G
Sbjct: 124 RIHVVDELVAGQKPS--TKSALAFLSRLTDRKKILFVVG 160
>gi|72163044|ref|YP_290701.1| 50S ribosomal protein L4 [Thermobifida fusca YX]
gi|109893650|sp|Q47LJ4.1|RL4_THEFY RecName: Full=50S ribosomal protein L4
gi|71916776|gb|AAZ56678.1| LSU ribosomal protein L4P [Thermobifida fusca YX]
Length = 222
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 108/179 (60%), Gaps = 4/179 (2%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + KG + L ++F + +IH+VV Q A +QGTHSTKT EV G GKK
Sbjct: 4 IEVKDREGAAKGSVELPDEIFAQKVNIPLIHQVVVAQQAAGRQGTHSTKTRGEVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R PQF GG T+HGPKPR +A + KK++ L+ ALS RA G++
Sbjct: 64 PYRQKGTGRARQGSVRAPQFTGGGTVHGPKPRDYAQRTPKKMKAAALRGALSNRAQHGRI 123
Query: 221 LVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
V + +V + +T+ + ++ ++ KVL+ + +LA +NL V++L +
Sbjct: 124 HVVSEFVPEDVTTKRTQTALKTLRKITDSDKVLVVL-SREDQHNRLALRNLPEVHILDA 181
>gi|432842972|ref|XP_004065529.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Oryzias
latipes]
Length = 302
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 2/171 (1%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
E G L DVF V R DI+H V +WQ ++ TK SEV G GKKPWRQKG+G
Sbjct: 84 EPLGRAELHPDVFGVSPRIDILHDVEKWQRNYKRISYAHTKVRSEVRGGGKKPWRQKGSG 143
Query: 169 RARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
RARHG++R P +RGG HGP+ P S+ L KVR GLK+ALS + A+ L V + L
Sbjct: 144 RARHGSIRSPLWRGGGVSHGPRGPTSYYYMLPMKVRVQGLKVALSFKMAQDYLHVVDSLH 203
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCD-GGCIHEKLKLATQNLHYVNVLPSV 277
+P+ ++++++ + + VL+ D E + A +L VN++P++
Sbjct: 204 IPTPDSQYLLDLIRRRHWGESVLIVDVAEEFPENILQAASDLKKVNLIPAI 254
>gi|323342790|ref|ZP_08083022.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae ATCC 19414]
gi|336066409|ref|YP_004561267.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|322463902|gb|EFY09096.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae ATCC 19414]
gi|334296355|dbj|BAK32226.1| 50S ribosomal protein L4 [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 209
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + I V Q A +QGTH TK +EV G G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 VFGIEPNNQTIFEAVVMQQASLRQGTHKTKNRTEVRGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ LN+KVRRL L+ ALS + + ++ V E+L V + KTK +
Sbjct: 83 WRGGGVVFGPTPRSYKYSLNRKVRRLALRSALSQKVMDSEMSVVENLTVENVKTKEFIAV 142
Query: 240 YNQMENTKKVLLC 252
+ ++ KK L
Sbjct: 143 MDALKLNKKTLFV 155
>gi|148693203|gb|EDL25150.1| mitochondrial ribosomal protein L4, isoform CRA_d [Mus musculus]
Length = 302
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 116/225 (51%), Gaps = 17/225 (7%)
Query: 66 ILTPDSSEGAFPSDLLLKKTVLTPDITIGLHQDLVIPVTNFFNEDKGFMVLAGDVF---- 121
I P S G D +L+K L + Q V + F E G L DVF
Sbjct: 34 ISEPRDSAGLL--DPVLRKCELRIPVHRRPVQAWVESLRGFEQERIGLAELHPDVFATAP 91
Query: 122 ----DVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRG 177
+ R DI+H+V WQ R+ +TKT +EVSG G+KPW+QKG+GRARHG++R
Sbjct: 92 RWSLTMKYRLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRS 151
Query: 178 PQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFI 236
P +RGG HGP+ P S+ L KVR LGLK+AL+ + + L + + LE+P+ +++
Sbjct: 152 PLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDSLELPTADPQYL 211
Query: 237 VNYYNQMENTKKVLLCDGGCIHEKLK----LATQNLHYVNVLPSV 277
VLL D HE++ AT L+ N++P+V
Sbjct: 212 TELAQYRHWGSSVLLVD--LTHEEMPKNVVAATSGLNSFNLIPAV 254
>gi|269215704|ref|ZP_06159558.1| ribosomal protein L4/L1 family protein [Slackia exigua ATCC 700122]
gi|269131191|gb|EEZ62266.1| ribosomal protein L4/L1 family protein [Slackia exigua ATCC 700122]
Length = 207
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 82/119 (68%), Gaps = 2/119 (1%)
Query: 116 LAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTL 175
L VF + ++H+VVR Q A +QGTHSTKT +VSG G+KPWRQKGTGRAR GT+
Sbjct: 19 LNAAVFGIEPNVPVMHQVVRSQQAALRQGTHSTKTRGQVSGGGRKPWRQKGTGRARQGTI 78
Query: 176 RGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFE--DLEVPSHK 232
R P + GG T+ GP PRS+A ++N+K +L + ALSA+ A+G+L V E D E PS K
Sbjct: 79 RAPHWVGGGTVFGPHPRSYAFRVNRKEVKLAERSALSAKLADGQLTVVEGFDFEEPSTK 137
>gi|116495946|ref|YP_807680.1| 50S ribosomal protein L4 [Lactobacillus casei ATCC 334]
gi|122262654|sp|Q034Y4.1|RL4_LACC3 RecName: Full=50S ribosomal protein L4
gi|116106096|gb|ABJ71238.1| LSU ribosomal protein L4P [Lactobacillus casei ATCC 334]
Length = 207
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 100/169 (59%), Gaps = 5/169 (2%)
Query: 110 DKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGR 169
+ G + L ++ V ++++ V Q +QGTH+ K S VSG G+KPWRQKGTGR
Sbjct: 13 ENGKVELNDAIWAVEPNENVVFDAVVMQRDSLRQGTHAVKNRSAVSGGGRKPWRQKGTGR 72
Query: 170 ARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVP 229
AR G++R PQ+RGG + GP PRS+A KL KKVRRL +K LS + + L+V + L
Sbjct: 73 ARQGSIRSPQWRGGGIVFGPTPRSYAYKLPKKVRRLAIKSVLSQKVLDSDLVVVDGLNFD 132
Query: 230 SHKTKFIVNYYNQMENTKK--VLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ KTK + ++ + K V+L DG + K A +NL V V+P+
Sbjct: 133 APKTKAFATVLDGLKVSDKALVVLEDGNEVAAK---AARNLPNVKVVPA 178
>gi|339639999|ref|ZP_08661443.1| 50S ribosomal protein L4 [Streptococcus sp. oral taxon 056 str.
F0418]
gi|339453268|gb|EGP65883.1| 50S ribosomal protein L4 [Streptococcus sp. oral taxon 056 str.
F0418]
Length = 207
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGVVFGPTPRSYAYKLPRKVRRLALKSVYSKKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDTKVLVILEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|375086501|ref|ZP_09732908.1| 50S ribosomal protein L4 [Megamonas funiformis YIT 11815]
gi|291533620|emb|CBL06733.1| LSU ribosomal protein L4P [Megamonas hypermegale ART12/1]
gi|374564846|gb|EHR36126.1| 50S ribosomal protein L4 [Megamonas funiformis YIT 11815]
Length = 207
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 102/176 (57%), Gaps = 1/176 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + G + L VF V + + ++H+ V QLA ++ GTH+TKT V G G+K
Sbjct: 4 VAVYTVAGQQIGDIELNESVFGVEVNEGLVHQAVVMQLAAQRLGTHATKTRGLVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PW+QKGTGRAR G+ R P + GG T+ GP PRS+A ++ +K RRL +K AL+ + G
Sbjct: 64 PWKQKGTGRARSGSTRSPLWVGGGTVFGPSPRSYAFRMPRKQRRLAIKCALTDKVNNGDF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+V E L+ + KTK +V + +K L+ + E ++ +++N+ V + S
Sbjct: 124 IVLESLDFAAPKTKEVVKMMSDFNVAEKALIVTADVV-ENVEKSSRNIPGVKAISS 178
>gi|218282170|ref|ZP_03488469.1| hypothetical protein EUBIFOR_01051 [Eubacterium biforme DSM 3989]
gi|218216849|gb|EEC90387.1| hypothetical protein EUBIFOR_01051 [Eubacterium biforme DSM 3989]
Length = 209
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 89/152 (58%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N G + L VF + + ++ + Q+A R+QGT TK SEVSG G+K
Sbjct: 4 IDVINQTGAVVGSIELNDAVFGIEPHQQAMYDALVMQMASRRQGTADTKGRSEVSGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQKGTGRAR G++R QFRGG T+ G PR++A ++NKKVRRL +K ALS + E
Sbjct: 64 PYRQKGTGRARQGSIRATQFRGGGTVFGATPRNYAYRINKKVRRLAVKSALSEKVQETAF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
V + E+ KTK V+ ++ KK L
Sbjct: 124 SVLDKFEIAEPKTKTFVSIIEAIQAPKKTLFV 155
>gi|255086631|ref|XP_002509282.1| predicted protein [Micromonas sp. RCC299]
gi|226524560|gb|ACO70540.1| predicted protein [Micromonas sp. RCC299]
Length = 190
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 98/163 (60%), Gaps = 7/163 (4%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
+ L G FDVP+R DI HRVV WQ +KR+ T T SEVSGT +K QKG GRAR G
Sbjct: 3 VTLPGRHFDVPLRVDIAHRVVVWQRSKRRGNYAKTLTRSEVSGTTRKARAQKGAGRARVG 62
Query: 174 TLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH- 231
TLR PQ RGG HGP R+ KL ++VRR GL++ALSA+AAEG+++V + L
Sbjct: 63 TLRAPQMRGGGVAHGPSGMRNWNTKLQRRVRRAGLQVALSAKAAEGRIVVLDSLHRGVEP 122
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KT+++ + + +K+ H K A+ NL +V V+
Sbjct: 123 KTQWLDGALDTLLGAQKL-----PTTHSNAKRASLNLPHVQVM 160
>gi|3122740|sp|O06114.1|RL4_MYCSM RecName: Full=50S ribosomal protein L4
gi|2113890|emb|CAA73669.1| ribosomal protein L4 [Mycobacterium smegmatis]
Length = 215
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDV ++H+VV QLA ++QGTHSTKT EVSG GKKP+RQKG+GRAR
Sbjct: 16 GSVELPAELFDVEPNIALMHQVVTAQLAAKRQGTHSTKTRGEVSGGGKKPYRQKGSGRAR 75
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVPS 230
G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA ++ V E +E +
Sbjct: 76 QGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNDRIHAVTELVEGQT 135
Query: 231 HKTKFIVNYYNQMENTKKVLLCDG 254
TK + + KKVL+ G
Sbjct: 136 PSTKSAKTFLGTLTENKKVLVVIG 159
>gi|422849666|ref|ZP_16896342.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK115]
gi|325689230|gb|EGD31236.1| 50S ribosomal protein L4 [Streptococcus sanguinis SK115]
Length = 207
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGIVFGPTPRSYAYKLPRKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDTKVLVILEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|373458302|ref|ZP_09550069.1| ribosomal protein L4/L1e [Caldithrix abyssi DSM 13497]
gi|371719966|gb|EHO41737.1| ribosomal protein L4/L1e [Caldithrix abyssi DSM 13497]
Length = 209
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + +I V+ LA R+QGTH+TK S V+G GKKP+RQKGTGRAR GT+R P
Sbjct: 23 VFGIKPNDHVIWLDVKAILANRRQGTHATKNRSAVAGGGKKPFRQKGTGRARQGTIRAPH 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
GG + GP PR ++ K+NKKV++L + ALS +A E K+LV +D TK +VN
Sbjct: 83 MVGGGRVFGPHPRDYSQKVNKKVKQLARRSALSYKAKENKILVVQDFNYEKPSTKNMVNL 142
Query: 240 YNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRST 281
+ + KKVL+C +K A NL+ V V SV ST
Sbjct: 143 LSNLNLEGKKVLICTSEYAPTLVKSAA-NLYQVEVRESVTFST 184
>gi|269219005|ref|ZP_06162859.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon
848 str. F0332]
gi|269212116|gb|EEZ78456.1| ribosomal protein L4/L1 family protein [Actinomyces sp. oral taxon
848 str. F0332]
Length = 215
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+ Q L V + + G L ++FDV + +IH+VV QLA +QGTHSTKT EV
Sbjct: 1 MTQSLNADVYDVTGKVTGSFELPAELFDVEVNIPLIHQVVNAQLAAARQGTHSTKTRGEV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKP++QKGTGRAR G++R PQF GG T+HGPKPR ++ + KK+ L +LS R
Sbjct: 61 SGGGKKPFKQKGTGRARQGSIRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALCQSLSDR 120
Query: 215 AAEGKLLVFE---DLEVPSHKTKF 235
A G++ V E + E PS K
Sbjct: 121 ARNGRIHVVEAFLEGEKPSTKAAL 144
>gi|322436545|ref|YP_004218757.1| 50S ribosomal protein L4 [Granulicella tundricola MP5ACTX9]
gi|321164272|gb|ADW69977.1| ribosomal protein L4/L1e [Granulicella tundricola MP5ACTX9]
Length = 226
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 100/177 (56%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V N E G L +VF+ I ++ V+ A +QGT +TK VSG+GKK
Sbjct: 4 INVVNLGGEKVGEFDLLDEVFNAEINDALLWEAVKHYRAAMRQGTAATKVRKNVSGSGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
W+QKGTGRAR G++R P +RGG T+HGP+PRS+ + KK L+ A+SA+ +GK
Sbjct: 64 LWKQKGTGRARVGSIRTPIWRGGGTVHGPQPRSYDYQFPKKKLMGALRSAISAKIQDGKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGG-CIHEKLKLATQNLHYVNVLPS 276
+ + EVP KTK ++E K LL + + EKL L ++NL V ++ S
Sbjct: 124 TIVDSFEVPEAKTKLYRQALTKLETGKTTLLVESSRKLEEKLYLGSRNLQGVELVLS 180
>gi|282857361|ref|ZP_06266598.1| ribosomal protein, L4/L1 family [Pyramidobacter piscolens W5455]
gi|282584861|gb|EFB90192.1| ribosomal protein, L4/L1 family [Pyramidobacter piscolens W5455]
Length = 207
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 90/154 (58%)
Query: 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGK 159
VI + N E G L+ +VF + +H+VV QLA +QGT STK EV G GK
Sbjct: 3 VIKIMNISGEVVGEKTLSDEVFGASVHVSAMHQVVVAQLAHARQGTASTKMRGEVRGGGK 62
Query: 160 KPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGK 219
KPW+QK TGRAR G+ R P + GG +HGPKPRS+ +K+NKKVR L ++ ALS R E
Sbjct: 63 KPWKQKHTGRARAGSSRSPLWVGGGVVHGPKPRSYDLKVNKKVRALAMRSALSMRVIEQS 122
Query: 220 LLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCD 253
L E+ + TK + + + ++ K + L D
Sbjct: 123 LCAVENFGFEAPSTKKMKGFIDSLKAKKILFLLD 156
>gi|406657872|ref|ZP_11066012.1| ribosomal protein L4/L1 family protein [Streptococcus iniae 9117]
gi|405578087|gb|EKB52201.1| ribosomal protein L4/L1 family protein [Streptococcus iniae 9117]
Length = 207
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/168 (42%), Positives = 96/168 (57%), Gaps = 7/168 (4%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVESLSFAAPKTAEFAKV 142
Query: 240 YNQMENTKKVL-LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ + KVL L + G +E L+ +NL V V +TT S L
Sbjct: 143 LSALSIDSKVLVLVEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|167767802|ref|ZP_02439855.1| hypothetical protein CLOSS21_02337 [Clostridium sp. SS2/1]
gi|317497094|ref|ZP_07955421.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|429762505|ref|ZP_19294894.1| 50S ribosomal protein L4 [Anaerostipes hadrus DSM 3319]
gi|167710541|gb|EDS21120.1| 50S ribosomal protein L4 [Clostridium sp. SS2/1]
gi|291558861|emb|CBL37661.1| LSU ribosomal protein L4P [butyrate-producing bacterium SSC/2]
gi|316895639|gb|EFV17794.1| ribosomal protein L4/L1 family protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|429181495|gb|EKY22654.1| 50S ribosomal protein L4 [Anaerostipes hadrus DSM 3319]
Length = 206
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 108/195 (55%), Gaps = 9/195 (4%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N ++ + L ++F V I + ++H V QLA +QGT KT SEV G G+K
Sbjct: 4 VSVLNMEGKEVEKLELNDNIFGVEINEHLVHLAVVSQLANNRQGTQKAKTRSEVRGGGRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTG AR G++R PQ++GG + P PR + KLNKK RR+ LK AL++R K
Sbjct: 64 PWRQKGTGHARQGSIRAPQWKGGGVVFAPTPREYTKKLNKKERRIALKSALTSRVQADKF 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+V ++ + KTK + + + K +++ G ++ L L+ +N LP V +
Sbjct: 124 VVIDEFKFDEIKTKNVKAMLDSVGAKKALVVM--GSKNDNLVLSARN------LPGVKTA 175
Query: 281 TTQSFLIYYYFLDFD 295
T + + Y L +D
Sbjct: 176 LTSTINV-YDILKYD 189
>gi|50843317|ref|YP_056544.1| 50S ribosomal protein L4 [Propionibacterium acnes KPA171202]
gi|335053586|ref|ZP_08546422.1| 50S ribosomal protein L4 [Propionibacterium sp. 434-HC2]
gi|387504227|ref|YP_005945456.1| 50S ribosomal protein L4 [Propionibacterium acnes 6609]
gi|422456901|ref|ZP_16533564.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL030PA1]
gi|81611203|sp|Q6A6M7.1|RL4_PROAC RecName: Full=50S ribosomal protein L4
gi|50840919|gb|AAT83586.1| 50S ribosomal protein L4 [Propionibacterium acnes KPA171202]
gi|315106072|gb|EFT78048.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL030PA1]
gi|333766847|gb|EGL44129.1| 50S ribosomal protein L4 [Propionibacterium sp. 434-HC2]
gi|335278272|gb|AEH30177.1| 50S ribosomal protein L4 [Propionibacterium acnes 6609]
Length = 301
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS K V + + +KVL+ E L+ +NL V
Sbjct: 121 ARDNRIFVVTSLVDGDKPSTKQAKAV--LSGLAELRKVLVVLDRS-DEIDWLSVRNLSEV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|300870646|ref|YP_003785517.1| 50S ribosomal protein L4 [Brachyspira pilosicoli 95/1000]
gi|404475006|ref|YP_006706437.1| 50S ribosomal protein L4 [Brachyspira pilosicoli B2904]
gi|431808526|ref|YP_007235424.1| 50S ribosomal protein L4 [Brachyspira pilosicoli P43/6/78]
gi|434383121|ref|YP_006704904.1| 50S ribosomal protein L4 [Brachyspira pilosicoli WesB]
gi|46577291|sp|Q9FA03.1|RL4_BRAPL RecName: Full=50S ribosomal protein L4
gi|11036694|gb|AAG27265.1| L4 ribosomal protein [Brachyspira pilosicoli P43/6/78]
gi|300688345|gb|ADK31016.1| 50S ribosomal protein L4 [Brachyspira pilosicoli 95/1000]
gi|404431770|emb|CCG57816.1| 50S ribosomal protein L4 [Brachyspira pilosicoli WesB]
gi|404436495|gb|AFR69689.1| 50S ribosomal protein L4 [Brachyspira pilosicoli B2904]
gi|430781885|gb|AGA67169.1| 50S ribosomal protein L4 [Brachyspira pilosicoli P43/6/78]
Length = 215
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 117/207 (56%), Gaps = 11/207 (5%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + + N + G + + ++F + ++++ ++ +LA R+QGTHSTKT +EVSG G
Sbjct: 1 MEVVILNENGDSVGNLEVVDEIFKSEVNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKPWRQKGTGRAR G+ R P + GG H PKPR ++ +L KK++R L LS +
Sbjct: 61 KKPWRQKGTGRARAGSTRSPIWVGGGKTHTPKPRDYSYRLPKKMKRKALLSVLSLKYGNN 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQME--NTKKVLLCDG-----GCIHEKLKLATQNLHYV 271
L VFED + KTK + ++ ++++ N++KV G G + KL L+ +N+ +
Sbjct: 121 VLKVFEDFTFDAPKTKRMASFISKVKEPNSRKVAFVVGKDESLGDNYNKLLLSLRNIKDL 180
Query: 272 NVLPSVVRSTTQSFLIYYYFLDFDFKK 298
+V + + S YY + F K
Sbjct: 181 ----KLVNADSMSIHPLYYADEVYFTK 203
>gi|322386353|ref|ZP_08059983.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100]
gi|417921214|ref|ZP_12564708.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100]
gi|321269577|gb|EFX52507.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100]
gi|342834798|gb|EGU69061.1| 50S ribosomal protein L4 [Streptococcus cristatus ATCC 51100]
Length = 207
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVVLNDAIFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+A KL +KVRRL LK S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGIVFGPTPRSYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLSF 131
Query: 229 PSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDTKVLVILEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|374853563|dbj|BAL56468.1| 50S ribosomal protein L4 [uncultured prokaryote]
Length = 209
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N + G M L +F + ++HRVV +LA ++QGTHST T EV G G+KPW
Sbjct: 6 VYNAQGQPVGEMELNPTLFSRTAKVSVLHRVVVAELAHQRQGTHSTLTRGEVRGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQK TGRAR G++R PQ+R G +HGPKPR + +NKK RR AL+ +A G L +
Sbjct: 66 RQKHTGRARQGSIRAPQWRHGGIVHGPKPRDYNPLVNKKERRQAFAAALTDKAESGALRI 125
Query: 223 FEDLEVPSHKTKFIVNYYNQM-ENTKKVLLC 252
E+L P KTK + + Q+ N +VL+
Sbjct: 126 VEELNFPEIKTKHALQFLTQLGANDGRVLVL 156
>gi|417848973|ref|ZP_12494905.1| 50S ribosomal protein L4 [Streptococcus mitis SK1080]
gi|339457721|gb|EGP70288.1| 50S ribosomal protein L4 [Streptococcus mitis SK1080]
Length = 207
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 99/177 (55%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL VF + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS+ KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|326385098|ref|ZP_08206768.1| 50S ribosomal protein L4 [Gordonia neofelifaecis NRRL B-59395]
gi|326196183|gb|EGD53387.1| 50S ribosomal protein L4 [Gordonia neofelifaecis NRRL B-59395]
Length = 219
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 88/137 (64%), Gaps = 3/137 (2%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V N + G + L ++FDV ++H+VV Q A +QGTHSTKT +V+G G
Sbjct: 9 LTLDVRNADGTNNGTVDLPAELFDVTANIALMHQVVVAQQAAGRQGTHSTKTRGQVAGGG 68
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KP+RQKGTGRAR G++R PQF GG T+HGP+PR + K+NKKV+ L+ ALS RA
Sbjct: 69 AKPYRQKGTGRARQGSIRAPQFTGGGTVHGPQPRDYTQKVNKKVKAAALRGALSDRARNE 128
Query: 219 KLLVFEDL---EVPSHK 232
++ V +L + PS K
Sbjct: 129 RIHVVTELVAGQTPSTK 145
>gi|422451192|ref|ZP_16527896.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL030PA2]
gi|315109231|gb|EFT81207.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL030PA2]
Length = 301
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS K V + + +KVL+ E L+ +NL V
Sbjct: 121 ARDNRIFVVTSLVDGDKPSTKQAKAV--LSGLAELRKVLVVLDRS-DEIDWLSVRNLSEV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|302382619|ref|YP_003818442.1| 50S ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC
15264]
gi|302193247|gb|ADL00819.1| ribosomal protein L4/L1e [Brevundimonas subvibrioides ATCC 15264]
Length = 222
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 103/174 (59%), Gaps = 2/174 (1%)
Query: 105 NFFNEDKGFMVLAGDVFDV-PIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
N + G + L+ +F + IR D++ R V WQLAKR+ GTH +T +E S TGKK ++
Sbjct: 7 NLDGKAAGDVELSDVIFGITDIRGDLLARYVNWQLAKRRAGTHKVQTRNENSRTGKKMYK 66
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QKGTG ARHG+ R PQF GG+ GP R H L KKVR L L+ ALS++ G L+V
Sbjct: 67 QKGTGGARHGSRRAPQFVGGSRAFGPIVRDHGFDLPKKVRALALRHALSSKVKTGDLVVV 126
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ L V KT + + ++ T+ +++ G + LA++N+ ++VLP+
Sbjct: 127 DALTVKEAKTSALRETFGKLGWTRTLIIA-GPEVDANFALASRNIPQIHVLPNA 179
>gi|289427743|ref|ZP_06429455.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
J165]
gi|295131386|ref|YP_003582049.1| ribosomal protein, L4/L1 family [Propionibacterium acnes SK137]
gi|335052497|ref|ZP_08545383.1| 50S ribosomal protein L4 [Propionibacterium sp. 409-HC1]
gi|342211839|ref|ZP_08704564.1| 50S ribosomal protein L4 [Propionibacterium sp. CC003-HC2]
gi|354607577|ref|ZP_09025546.1| 50S ribosomal protein L4 [Propionibacterium sp. 5_U_42AFAA]
gi|365963507|ref|YP_004945073.1| ribosomal protein, L4/L1 family [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965751|ref|YP_004947316.1| ribosomal protein, L4/L1 family [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974686|ref|YP_004956245.1| ribosomal protein, L4/L1 family [Propionibacterium acnes TypeIA2
P.acn33]
gi|386024799|ref|YP_005943104.1| 50S ribosomal protein L4 [Propionibacterium acnes 266]
gi|407936243|ref|YP_006851885.1| 50S ribosomal protein L4 [Propionibacterium acnes C1]
gi|417930104|ref|ZP_12573484.1| 50S ribosomal protein L4 [Propionibacterium acnes SK182]
gi|422386376|ref|ZP_16466496.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA3]
gi|422388799|ref|ZP_16468899.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA2]
gi|422392519|ref|ZP_16472588.1| 50S ribosomal protein L4 [Propionibacterium acnes HL099PA1]
gi|422425705|ref|ZP_16502635.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL043PA1]
gi|422428746|ref|ZP_16505656.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL087PA1]
gi|422429718|ref|ZP_16506614.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL072PA2]
gi|422433913|ref|ZP_16510777.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL059PA2]
gi|422436515|ref|ZP_16513364.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL083PA2]
gi|422438982|ref|ZP_16515819.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL092PA1]
gi|422443903|ref|ZP_16520700.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL002PA1]
gi|422444527|ref|ZP_16521311.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL027PA1]
gi|422448524|ref|ZP_16525251.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL036PA3]
gi|422453941|ref|ZP_16530622.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL087PA3]
gi|422461318|ref|ZP_16537948.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL038PA1]
gi|422475875|ref|ZP_16552319.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL056PA1]
gi|422478508|ref|ZP_16554929.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL007PA1]
gi|422483693|ref|ZP_16560081.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL036PA1]
gi|422484317|ref|ZP_16560695.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL043PA2]
gi|422486921|ref|ZP_16563264.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL013PA2]
gi|422490067|ref|ZP_16566388.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL020PA1]
gi|422493845|ref|ZP_16570142.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL086PA1]
gi|422496555|ref|ZP_16572839.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL025PA1]
gi|422497184|ref|ZP_16573459.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL002PA3]
gi|422500587|ref|ZP_16576842.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL063PA2]
gi|422503594|ref|ZP_16579832.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL027PA2]
gi|422505811|ref|ZP_16582040.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL036PA2]
gi|422508789|ref|ZP_16584948.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL046PA2]
gi|422510211|ref|ZP_16586359.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL059PA1]
gi|422512200|ref|ZP_16588335.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL087PA2]
gi|422517137|ref|ZP_16593242.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL110PA2]
gi|422517731|ref|ZP_16593822.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL074PA1]
gi|422522290|ref|ZP_16598316.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL045PA1]
gi|422525062|ref|ZP_16601070.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL053PA2]
gi|422526778|ref|ZP_16602771.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL083PA1]
gi|422529981|ref|ZP_16605946.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL053PA1]
gi|422531032|ref|ZP_16606981.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL110PA1]
gi|422532943|ref|ZP_16608885.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL072PA1]
gi|422538119|ref|ZP_16613998.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL078PA1]
gi|422540702|ref|ZP_16616567.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL013PA1]
gi|422540764|ref|ZP_16616626.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL037PA1]
gi|422544806|ref|ZP_16620641.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL082PA1]
gi|422548442|ref|ZP_16624257.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL050PA3]
gi|422550135|ref|ZP_16625934.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL050PA1]
gi|422553277|ref|ZP_16629063.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL005PA3]
gi|422555941|ref|ZP_16631702.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL005PA2]
gi|422557849|ref|ZP_16633590.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL025PA2]
gi|422559813|ref|ZP_16635528.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL005PA1]
gi|422563744|ref|ZP_16639419.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL046PA1]
gi|422568168|ref|ZP_16643792.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL002PA2]
gi|422571652|ref|ZP_16647234.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL067PA1]
gi|422579624|ref|ZP_16655143.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL005PA4]
gi|289159234|gb|EFD07426.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
J165]
gi|291376076|gb|ADD99930.1| ribosomal protein, L4/L1 family [Propionibacterium acnes SK137]
gi|313763237|gb|EFS34601.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL013PA1]
gi|313773096|gb|EFS39062.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL074PA1]
gi|313793259|gb|EFS41317.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL110PA1]
gi|313801097|gb|EFS42365.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL110PA2]
gi|313808838|gb|EFS47292.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL087PA2]
gi|313810368|gb|EFS48082.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL083PA1]
gi|313812296|gb|EFS50010.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL025PA1]
gi|313816573|gb|EFS54287.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL059PA1]
gi|313818018|gb|EFS55732.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL046PA2]
gi|313819931|gb|EFS57645.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL036PA1]
gi|313823421|gb|EFS61135.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL036PA2]
gi|313828365|gb|EFS66079.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL063PA2]
gi|313830135|gb|EFS67849.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL007PA1]
gi|313832594|gb|EFS70308.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL056PA1]
gi|313837950|gb|EFS75664.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL086PA1]
gi|314914333|gb|EFS78164.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL005PA4]
gi|314917653|gb|EFS81484.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL050PA1]
gi|314919615|gb|EFS83446.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL050PA3]
gi|314925787|gb|EFS89618.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL036PA3]
gi|314930206|gb|EFS94037.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL067PA1]
gi|314957187|gb|EFT01291.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL027PA1]
gi|314957763|gb|EFT01866.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL002PA1]
gi|314960867|gb|EFT04968.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL002PA2]
gi|314963541|gb|EFT07641.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL082PA1]
gi|314969876|gb|EFT13974.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL037PA1]
gi|314973016|gb|EFT17112.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL053PA1]
gi|314975512|gb|EFT19607.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL045PA1]
gi|314979746|gb|EFT23840.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL072PA2]
gi|314984888|gb|EFT28980.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL005PA1]
gi|314986054|gb|EFT30146.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL005PA2]
gi|314988670|gb|EFT32761.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL005PA3]
gi|315077164|gb|EFT49231.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL053PA2]
gi|315079849|gb|EFT51825.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL078PA1]
gi|315083217|gb|EFT55193.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL027PA2]
gi|315086829|gb|EFT58805.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL002PA3]
gi|315089922|gb|EFT61898.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL072PA1]
gi|315096756|gb|EFT68732.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL038PA1]
gi|315097984|gb|EFT69960.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL059PA2]
gi|315100627|gb|EFT72603.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL046PA1]
gi|327325170|gb|EGE66976.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA3]
gi|327325200|gb|EGE67005.1| 50S ribosomal protein L4 [Propionibacterium acnes HL096PA2]
gi|327444001|gb|EGE90655.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL043PA1]
gi|327449371|gb|EGE96025.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL013PA2]
gi|327449401|gb|EGE96055.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL043PA2]
gi|327451422|gb|EGE98076.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL087PA3]
gi|327451603|gb|EGE98257.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL092PA1]
gi|327451890|gb|EGE98544.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL083PA2]
gi|328752104|gb|EGF65720.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL087PA1]
gi|328755500|gb|EGF69116.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL025PA2]
gi|328756284|gb|EGF69900.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL020PA1]
gi|328761382|gb|EGF74909.1| 50S ribosomal protein L4 [Propionibacterium acnes HL099PA1]
gi|332676257|gb|AEE73073.1| 50S ribosomal protein L4 [Propionibacterium acnes 266]
gi|333763814|gb|EGL41239.1| 50S ribosomal protein L4 [Propionibacterium sp. 409-HC1]
gi|340767383|gb|EGR89908.1| 50S ribosomal protein L4 [Propionibacterium sp. CC003-HC2]
gi|340772791|gb|EGR95292.1| 50S ribosomal protein L4 [Propionibacterium acnes SK182]
gi|353556596|gb|EHC25966.1| 50S ribosomal protein L4 [Propionibacterium sp. 5_U_42AFAA]
gi|365740188|gb|AEW84390.1| ribosomal protein, L4/L1 family [Propionibacterium acnes TypeIA2
P.acn31]
gi|365742432|gb|AEW82126.1| ribosomal protein, L4/L1 family [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744685|gb|AEW79882.1| ribosomal protein, L4/L1 family [Propionibacterium acnes TypeIA2
P.acn33]
gi|407904824|gb|AFU41654.1| 50S ribosomal protein L4 [Propionibacterium acnes C1]
gi|456738948|gb|EMF63515.1| 50S ribosomal protein L4 [Propionibacterium acnes FZ1/2/0]
Length = 301
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS K V + + +KVL+ E L+ +NL V
Sbjct: 121 ARDNRIFVVTSLVDGDKPSTKQAKAV--LSGLAELRKVLVVLDRS-DEIDWLSVRNLSEV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|322418365|ref|YP_004197588.1| 50S ribosomal protein L4 [Geobacter sp. M18]
gi|320124752|gb|ADW12312.1| ribosomal protein L4/L1e [Geobacter sp. M18]
Length = 207
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 101/167 (60%), Gaps = 2/167 (1%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
N G + ++ VF+ +R+ +IH V+ QLA R+QGT + K S V+G+GKKP++QKGT
Sbjct: 11 NAKVGEIEVSDAVFNDDVREYLIHEAVKIQLANRRQGTVAVKNRSAVAGSGKKPFKQKGT 70
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
G+AR G R PQ+ GG GP+P+++ + +NKK R+ L+ ALS + + V + E
Sbjct: 71 GQARQGCSRAPQYPGGGVAFGPQPKTYNLSMNKKARKAALRSALSMLYKKDAITVLNNFE 130
Query: 228 VPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+P+ KTK V N K +++ D + L+L+ +N+ +V VL
Sbjct: 131 LPAVKTKGFVEVLNAFNLDKTLVITD--TANPTLELSARNVKHVKVL 175
>gi|422391174|ref|ZP_16471267.1| 50S ribosomal protein L4 [Propionibacterium acnes HL103PA1]
gi|422458947|ref|ZP_16535596.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL050PA2]
gi|422464169|ref|ZP_16540780.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL060PA1]
gi|422566402|ref|ZP_16642036.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL082PA2]
gi|422575121|ref|ZP_16650665.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL001PA1]
gi|314924184|gb|EFS88015.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL001PA1]
gi|314965094|gb|EFT09193.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL082PA2]
gi|315093674|gb|EFT65650.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL060PA1]
gi|315103968|gb|EFT75944.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL050PA2]
gi|327326711|gb|EGE68497.1| 50S ribosomal protein L4 [Propionibacterium acnes HL103PA1]
Length = 301
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS K V + + +KVL+ E L+ +NL V
Sbjct: 121 ARDNRIFVVTSLVDGDKPSTKQAKAV--LSGVAELRKVLVVLDRS-DEIDWLSVRNLSEV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|422481184|ref|ZP_16557586.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL063PA1]
gi|313824893|gb|EFS62607.1| ribosomal protein L4/L1 family protein [Propionibacterium acnes
HL063PA1]
Length = 301
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GD+FDV +IH+VV QLA +QGTH+TKT +V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDLFDVNTNIPLIHQVVVAQLAAARQGTHATKTRGQV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVGAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS K V + + +KVL+ E L+ +NL V
Sbjct: 121 ARDNRIFVVTSLVDGDKPSTKQAKAV--LSGLAELRKVLVVLDRS-DEIDWLSVRNLSEV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|295425651|ref|ZP_06818338.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus
DSM 11664]
gi|295064667|gb|EFG55588.1| ribosomal protein L4/L1 family protein [Lactobacillus amylolyticus
DSM 11664]
Length = 205
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 102/175 (58%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVIDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGQRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYSMPRKQRRLAIKSVLSQKLIDKNL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK V+ + ++ KVL+ + ++L+ +NL V V+P
Sbjct: 124 IVLDKLTMSAPKTKEFVSILDSLKVESKVLVVSD---DKNVQLSAKNLPKVKVVP 175
>gi|336326438|ref|YP_004606404.1| 50S ribosomal protein L4 [Corynebacterium resistens DSM 45100]
gi|336102420|gb|AEI10240.1| 50S ribosomal protein L4 [Corynebacterium resistens DSM 45100]
Length = 217
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 97/160 (60%), Gaps = 5/160 (3%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+L + V + G + L +FD + ++H+VV QLA ++QGTH+TK +V G
Sbjct: 3 NLKLDVHTADGKTNGSVELPASIFDAEVSVALMHQVVTAQLAAKRQGTHATKARGDVRGG 62
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R P F GG T+HGP+PR ++ + KK++ L+ AL+ RA
Sbjct: 63 GRKPWRQKGTGRARQGSIRAPHFTGGGTVHGPQPRDYSQRTPKKMKAAALRGALTDRARH 122
Query: 218 GKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDG 254
++ V EDL + PS TK + ++ + K VL+ G
Sbjct: 123 ARIHVVEDLVPGQTPS--TKSARGFLERLTDRKSVLVVLG 160
>gi|407278740|ref|ZP_11107210.1| 50S ribosomal protein L4 [Rhodococcus sp. P14]
gi|452954079|gb|EME59484.1| 50S ribosomal protein L4 [Rhodococcus ruber BKS 20-38]
Length = 227
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 105/181 (58%), Gaps = 10/181 (5%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
L + V + G + L ++FD P ++H+VV QLA +QGTH+TKT EV G G
Sbjct: 10 LTLDVKAPGGQTNGTVDLPAEIFDAPANIALLHQVVVAQLAAARQGTHATKTRGEVRGGG 69
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
+KP+RQKGTGRAR G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA
Sbjct: 70 RKPYRQKGTGRARQGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARNE 129
Query: 219 KLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKL--ATQNLHYVNV 273
++ V +L + PS TK + ++ + K +LL G E L + QNL V+
Sbjct: 130 RIHVITELVAGQAPS--TKGARTFLAELTDRKNLLLVVG---REDLAAWKSVQNLQNVHA 184
Query: 274 L 274
+
Sbjct: 185 I 185
>gi|15607842|ref|NP_215216.1| 50S ribosomal protein L4 RplD [Mycobacterium tuberculosis H37Rv]
gi|15840109|ref|NP_335146.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CDC1551]
gi|31791887|ref|NP_854380.1| 50S ribosomal protein L4 [Mycobacterium bovis AF2122/97]
gi|121636624|ref|YP_976847.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148660477|ref|YP_001282000.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra]
gi|148821907|ref|YP_001286661.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis F11]
gi|167967944|ref|ZP_02550221.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra]
gi|224989096|ref|YP_002643783.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172]
gi|253797645|ref|YP_003030646.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN 1435]
gi|254231022|ref|ZP_04924349.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C]
gi|254363649|ref|ZP_04979695.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str.
Haarlem]
gi|254549663|ref|ZP_05140110.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289442103|ref|ZP_06431847.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46]
gi|289446262|ref|ZP_06436006.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A]
gi|289568646|ref|ZP_06448873.1| ribosomal protein L4 [Mycobacterium tuberculosis T17]
gi|289573310|ref|ZP_06453537.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85]
gi|289744426|ref|ZP_06503804.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987]
gi|289749209|ref|ZP_06508587.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92]
gi|289752749|ref|ZP_06512127.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054]
gi|289756790|ref|ZP_06516168.1| ribosomal protein L4 [Mycobacterium tuberculosis T85]
gi|289760829|ref|ZP_06520207.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503]
gi|294996197|ref|ZP_06801888.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 210]
gi|297633201|ref|ZP_06950981.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN 4207]
gi|297730181|ref|ZP_06959299.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN R506]
gi|298524193|ref|ZP_07011602.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A]
gi|306774813|ref|ZP_07413150.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001]
gi|306781455|ref|ZP_07419792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002]
gi|306783354|ref|ZP_07421676.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003]
gi|306787723|ref|ZP_07426045.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004]
gi|306794490|ref|ZP_07432792.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005]
gi|306796456|ref|ZP_07434758.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006]
gi|306802316|ref|ZP_07438984.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008]
gi|306806526|ref|ZP_07443194.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007]
gi|306966723|ref|ZP_07479384.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009]
gi|306970915|ref|ZP_07483576.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010]
gi|307078645|ref|ZP_07487815.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011]
gi|307083209|ref|ZP_07492322.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012]
gi|313657508|ref|ZP_07814388.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis KZN V2475]
gi|339630771|ref|YP_004722413.1| 50S ribosomal protein L4 [Mycobacterium africanum GM041182]
gi|375294921|ref|YP_005099188.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 4207]
gi|378770458|ref|YP_005170191.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Mexico]
gi|383306603|ref|YP_005359414.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis RGTB327]
gi|385990177|ref|YP_005908475.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CCDC5180]
gi|385993777|ref|YP_005912075.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CCDC5079]
gi|385997481|ref|YP_005915779.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CTRI-2]
gi|386003734|ref|YP_005922013.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis RGTB423]
gi|392385422|ref|YP_005307051.1| rplD [Mycobacterium tuberculosis UT205]
gi|392431131|ref|YP_006472175.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605]
gi|397672511|ref|YP_006514046.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Rv]
gi|422811642|ref|ZP_16860043.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CDC1551A]
gi|424805800|ref|ZP_18231231.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis W-148]
gi|424946471|ref|ZP_18362167.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis NCGM2209]
gi|449062724|ref|YP_007429807.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Korea 1168P]
gi|46397667|sp|P60728.1|RL4_MYCBO RecName: Full=50S ribosomal protein L4
gi|46397668|sp|P60729.1|RL4_MYCTU RecName: Full=50S ribosomal protein L4
gi|166234687|sp|A1KGI3.1|RL4_MYCBP RecName: Full=50S ribosomal protein L4
gi|166234691|sp|A5U088.1|RL4_MYCTA RecName: Full=50S ribosomal protein L4
gi|254803746|sp|C1AL36.1|RL4_MYCBT RecName: Full=50S ribosomal protein L4
gi|13880259|gb|AAK44960.1| ribosomal protein L4 [Mycobacterium tuberculosis CDC1551]
gi|31617474|emb|CAD93584.1| PROBABLE 50S RIBOSOMAL PROTEIN L4 RPLD [Mycobacterium bovis
AF2122/97]
gi|121492271|emb|CAL70738.1| Probable 50S ribosomal protein L4 rplD [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|124600081|gb|EAY59091.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis C]
gi|134149163|gb|EBA41208.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis str.
Haarlem]
gi|148504629|gb|ABQ72438.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Ra]
gi|148720434|gb|ABR05059.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis F11]
gi|224772209|dbj|BAH25015.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Tokyo 172]
gi|253319148|gb|ACT23751.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 1435]
gi|289415022|gb|EFD12262.1| LSU ribosomal protein L4/L1 [Mycobacterium tuberculosis T46]
gi|289419220|gb|EFD16421.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CPHL_A]
gi|289537741|gb|EFD42319.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis K85]
gi|289542400|gb|EFD46048.1| ribosomal protein L4 [Mycobacterium tuberculosis T17]
gi|289684954|gb|EFD52442.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis 02_1987]
gi|289689796|gb|EFD57225.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis T92]
gi|289693336|gb|EFD60765.1| ribosomal protein L4 [Mycobacterium tuberculosis EAS054]
gi|289708335|gb|EFD72351.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis GM 1503]
gi|289712354|gb|EFD76366.1| ribosomal protein L4 [Mycobacterium tuberculosis T85]
gi|298493987|gb|EFI29281.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis 94_M4241A]
gi|308216703|gb|EFO76102.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu001]
gi|308325755|gb|EFP14606.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu002]
gi|308331848|gb|EFP20699.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu003]
gi|308335635|gb|EFP24486.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu004]
gi|308337250|gb|EFP26101.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu005]
gi|308343116|gb|EFP31967.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu006]
gi|308347003|gb|EFP35854.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu007]
gi|308350982|gb|EFP39833.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu008]
gi|308355578|gb|EFP44429.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu009]
gi|308359536|gb|EFP48387.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu010]
gi|308363441|gb|EFP52292.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu011]
gi|308367079|gb|EFP55930.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis SUMu012]
gi|323720926|gb|EGB29992.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis CDC1551A]
gi|326905076|gb|EGE52009.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis W-148]
gi|328457426|gb|AEB02849.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 4207]
gi|339293731|gb|AEJ45842.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CCDC5079]
gi|339297370|gb|AEJ49480.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CCDC5180]
gi|339330127|emb|CCC25783.1| putative 50S ribosomal protein L4 RPLD [Mycobacterium africanum
GM041182]
gi|341600640|emb|CCC63310.1| probable 50S ribosomal protein L4 rplD [Mycobacterium bovis BCG
str. Moreau RDJ]
gi|344218527|gb|AEM99157.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis CTRI-2]
gi|356592779|gb|AET18008.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Mexico]
gi|358230986|dbj|GAA44478.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis NCGM2209]
gi|378543973|emb|CCE36245.1| rplD [Mycobacterium tuberculosis UT205]
gi|379026853|dbj|BAL64586.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|380720556|gb|AFE15665.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis RGTB327]
gi|380724222|gb|AFE12017.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis RGTB423]
gi|392052540|gb|AFM48098.1| 50S ribosomal protein L4 rplD [Mycobacterium tuberculosis KZN 605]
gi|395137416|gb|AFN48575.1| 50S ribosomal protein L4 [Mycobacterium tuberculosis H37Rv]
gi|440580166|emb|CCG10569.1| putative 50S RIBOSOMAL protein L4 RPLD [Mycobacterium tuberculosis
7199-99]
gi|444894192|emb|CCP43446.1| 50S ribosomal protein L4 RplD [Mycobacterium tuberculosis H37Rv]
gi|449031232|gb|AGE66659.1| 50S ribosomal protein L4 [Mycobacterium bovis BCG str. Korea 1168P]
Length = 223
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 98/164 (59%), Gaps = 2/164 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG G+KP+RQKGTGRAR
Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL-EVPS 230
G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA G++ +L E +
Sbjct: 82 QGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVEGQN 141
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
TK + + K+VL+ G K + +NL V++L
Sbjct: 142 PSTKSARAFLASLTERKQVLVVIGRSDEAGAK-SVRNLPGVHIL 184
>gi|354475149|ref|XP_003499792.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Cricetulus
griseus]
gi|344240104|gb|EGV96207.1| 39S ribosomal protein L4, mitochondrial [Cricetulus griseus]
Length = 294
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 98/178 (55%), Gaps = 7/178 (3%)
Query: 105 NFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQ 164
F E G L DVF R DI+H+V WQ ++ TKT +EVSG G+KPW+Q
Sbjct: 71 GFEQERVGLAELHPDVFATAPRLDILHQVATWQKNFKRISYAKTKTRAEVSGGGRKPWQQ 130
Query: 165 KGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
KG+GRARHG++R P +RGG HGP+ P S+ L KVR LGLK AL+ + + L +
Sbjct: 131 KGSGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKAALTVKLMQDDLHIV 190
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEK----LKLATQNLHYVNVLPSV 277
+ LE+P+ +++ VLL D HE+ + AT L N++P+V
Sbjct: 191 DSLELPTADPQYLTELAQYRHWGSSVLLVD--LTHEEAPKNVVAATSRLKSFNLIPAV 246
>gi|170017942|ref|YP_001728861.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20]
gi|414597678|ref|ZP_11447239.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE E16]
gi|421876144|ref|ZP_16307704.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE C10]
gi|421878523|ref|ZP_16310003.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE C11]
gi|226730683|sp|B1MW13.1|RL4_LEUCK RecName: Full=50S ribosomal protein L4
gi|169804799|gb|ACA83417.1| 50S ribosomal protein L4 [Leuconostoc citreum KM20]
gi|372558179|emb|CCF23824.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE C10]
gi|390447650|emb|CCF26123.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE C11]
gi|390481589|emb|CCF29300.1| 50S ribosomal protein L4 [Leuconostoc citreum LBAE E16]
Length = 207
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + +I V Q A +QGTH+ K S VSG G+KPW+QKGTGRAR G++R PQ
Sbjct: 23 VFAIEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRARAGSIREPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTK-FIVN 238
FRGG + GP PRS+A ++N+K +L LK LS + AEGKL+V + L + KT+ F
Sbjct: 83 FRGGGIVFGPTPRSYAYRINRKAYQLALKSVLSQKVAEGKLVVVDALSFEAPKTQDFKKV 142
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
N +TK +++ D +E L+ +NL V V+ +
Sbjct: 143 LANLSVDTKTLVVVDED--NENAILSARNLTNVQVMTT 178
>gi|81429376|ref|YP_396377.1| 50S ribosomal protein L4 [Lactobacillus sakei subsp. sakei 23K]
gi|109893600|sp|Q38UR3.1|RL4_LACSS RecName: Full=50S ribosomal protein L4
gi|78611019|emb|CAI56071.1| 50S ribosomal protein L4 [Lactobacillus sakei subsp. sakei 23K]
Length = 207
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 104/175 (59%), Gaps = 6/175 (3%)
Query: 106 FFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
F +D G + L ++ + ++++ + Q A +QGTH+ K S V G G+KPW
Sbjct: 6 LFKQDGSQNGNVELNDSIWAIEPNENVVFDAIIMQRASLRQGTHAVKNRSAVRGGGRKPW 65
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G++R PQ+RGG + GP PRS++ KL +KVRRL +K LS + + L+V
Sbjct: 66 RQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPRKVRRLAIKSVLSQKVIDNDLIV 125
Query: 223 FEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ + KTK N+++ NTK +++ + G ++ L+ +NL V V+P+
Sbjct: 126 VDSFSFDAPKTKEFAEVLNKLDVNTKVLVVLEDG--NDFTALSARNLPNVTVVPA 178
>gi|350567991|ref|ZP_08936397.1| 50S ribosomal protein L4 [Propionibacterium avidum ATCC 25577]
gi|348662243|gb|EGY78912.1| 50S ribosomal protein L4 [Propionibacterium avidum ATCC 25577]
Length = 301
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 6/185 (3%)
Query: 95 LHQDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEV 154
+++ I V + + G L GDVFD +IH+VV QLA +QGTH+TKT V
Sbjct: 1 MNETKTIDVLDVKGKKAGSAELPGDVFDANTNIPLIHQVVIAQLAAARQGTHATKTRGLV 60
Query: 155 SGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSAR 214
SG GKKPWRQKGTGRAR G+ R PQ+ GG T+HGP+PRS+A + KK+ L+ ALS
Sbjct: 61 SGGGKKPWRQKGTGRARQGSTRAPQWVGGGTVHGPQPRSYAQRTPKKMVAAALRGALSDM 120
Query: 215 AAEGKLLVFEDL---EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
A + ++ V L + PS K V + + +KVL+ E L+ +NL+ V
Sbjct: 121 ARDNRIFVVTSLVDGDKPSTKQAKAV--LSGLAELRKVLVVLDRS-EEVAWLSVRNLNGV 177
Query: 272 NVLPS 276
+VL +
Sbjct: 178 HVLAA 182
>gi|289168731|ref|YP_003447000.1| 50S ribosomal protein L4 [Streptococcus mitis B6]
gi|288908298|emb|CBJ23140.1| 50S ribosomal protein L4 [Streptococcus mitis B6]
Length = 207
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/177 (41%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G +VL +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTGRAR
Sbjct: 15 GEVVLNDAIFGIEPNESVVFDVIVSQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PR++A KL +KVRRL LK S + AE K + + LE +
Sbjct: 75 QGSIRSPQWRGGGIVFGPTPRNYAYKLPQKVRRLALKSVYSEKVAENKFVAVDSLEFTAP 134
Query: 232 KTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 135 KTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|329898793|ref|ZP_08272465.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC3088]
gi|328920745|gb|EGG28207.1| LSU ribosomal protein L4p (L1e) [gamma proteobacterium IMCC3088]
Length = 205
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 6/168 (3%)
Query: 108 NEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGT 167
N G + ++ F + ++H+VV LA +QGT + KT SEVSG GKKPWRQKGT
Sbjct: 10 NASAGTVSVSDVAFAREYNEALVHQVVTAYLAGARQGTRAQKTRSEVSGGGKKPWRQKGT 69
Query: 168 GRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLE 227
GRAR GT+R P +R G KP+ H+ K+N+K+ R ++ LS A + +LLV E ++
Sbjct: 70 GRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNRKMYRAAIRSILSELARQERLLVVESMD 129
Query: 228 VPSHKTKFIVNYYNQ--MENTKKVLLCDGGCIHEKLKLATQNLHYVNV 273
V + KTK +V + ++N +L ++E L LA++NLH V+V
Sbjct: 130 VEAPKTKLLVKQLGEFGLDN----VLIVASEVNENLYLASRNLHTVDV 173
>gi|262038243|ref|ZP_06011633.1| ribosomal protein, L4/L1 family [Leptotrichia goodfellowii F0264]
gi|261747710|gb|EEY35159.1| ribosomal protein, L4/L1 family [Leptotrichia goodfellowii F0264]
Length = 214
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 111/196 (56%), Gaps = 11/196 (5%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+PV N + D G + + ++F + K ++H V+ +LA ++G STKT +EV G
Sbjct: 1 MPVLNTYKLDGSKAGTVEVKEEIFGIEPNKTVMHEVLVAELAGAREGNASTKTRAEVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KP+RQKGTGRAR G+ R P GG +HGPKPR + K+NKKVRRL L+ AL+ +
Sbjct: 61 GRKPFRQKGTGRARQGSTRAPHMVGGGVVHGPKPRDYTKKVNKKVRRLALRSALATKINN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQME--NTKKVLLCD--GGCIHEKLKL--ATQNLHYV 271
G L+V +D + KTK V + + K++ + D G + + L + +NL V
Sbjct: 121 GDLIVLDDFTLDVPKTKTFVQFAKALNFAGEKQLFIADYNGETFNRDINLEYSVRNLEKV 180
Query: 272 NVLPSVVRSTTQSFLI 287
L S RS + +LI
Sbjct: 181 MTLDS--RSLSIFWLI 194
>gi|182418832|ref|ZP_02950097.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521]
gi|237666492|ref|ZP_04526477.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377329|gb|EDT74890.1| ribosomal protein L4/L1 family [Clostridium butyricum 5521]
gi|237657691|gb|EEP55246.1| ribosomal protein, L4/L1 family [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 206
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 104/182 (57%), Gaps = 9/182 (4%)
Query: 114 MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHG 173
M L VF + + +H+VV LA ++QGT STKT SEV G G KPWRQKGTGRAR G
Sbjct: 17 MELNESVFATEVNQYALHQVVVALLANKRQGTQSTKTRSEVRGGGIKPWRQKGTGRARQG 76
Query: 174 TLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKT 233
++R PQ+ G + PKPR + + K +R++ +K AL+++ + ++V E L + KT
Sbjct: 77 SIRAPQWIKGGIVFAPKPRDYRVSTPKSMRKVAMKSALTSKVQDNSMIVLESLNFDAPKT 136
Query: 234 KFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLD 293
K +V N +E K +++ +E + + +N+ V+V+P+ + + Y L
Sbjct: 137 KNVVAMLNALEAPKALIITAES--NEAVYKSARNIQGVSVIPA-------NNINVYDLLK 187
Query: 294 FD 295
FD
Sbjct: 188 FD 189
>gi|422758024|ref|ZP_16811786.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322410859|gb|EFY01767.1| 50S ribosomal protein L4 [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 207
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKV 142
Query: 240 YNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+ + +TK ++L + G +E L+ +NL V V + S
Sbjct: 143 LSALGIDTKVLVLIEEG--NEFAALSARNLPNVTVATAATAS 182
>gi|73661973|ref|YP_300754.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|418575457|ref|ZP_13139608.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
gi|82581595|sp|Q49ZG7.1|RL4_STAS1 RecName: Full=50S ribosomal protein L4
gi|72494488|dbj|BAE17809.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|379326077|gb|EHY93204.1| 50S ribosomal protein L4 [Staphylococcus saprophyticus subsp.
saprophyticus KACC 16562]
Length = 207
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 87/141 (61%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + +++ + Q A +QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELSDAVFAIEPNNNVLFEAINLQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS++ K+ KK+RRL L+ ALS + E L V + L + +
Sbjct: 75 QGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQEKGLTVVDALNLDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK + +E KKVL+
Sbjct: 135 KTKEFKTVLSNLEQPKKVLVV 155
>gi|218779761|ref|YP_002431079.1| 50S ribosomal protein L4 [Desulfatibacillum alkenivorans AK-01]
gi|226730651|sp|B8FET4.1|RL4_DESAA RecName: Full=50S ribosomal protein L4
gi|218761145|gb|ACL03611.1| ribosomal protein L4/L1e [Desulfatibacillum alkenivorans AK-01]
Length = 206
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 103/176 (58%), Gaps = 2/176 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N E + LA ++F V ++ ++H VV QLA R+ GT K S+V G+ +K
Sbjct: 4 VEVCNMSGEKVSEIDLADEIFGVEVKGSVLHEVVVMQLANRRAGTVCVKNRSDVRGSTRK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRAR G ++ P RGG + GP PR ++ K+ KKVR+ LK+ALS++ A+ L
Sbjct: 64 LYRQKGTGRARKGDIKSPVLRGGGVVFGPHPRDYSYKVPKKVRKAALKMALSSKLADNSL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
V +++++P KTK M +++ G + L+L+ +N+ V V+P+
Sbjct: 124 KVVDNMDLPEIKTKAFAEAMAAMGVDTALIVTTGE--EKNLELSARNVKGVKVMPT 177
>gi|2113867|emb|CAA73673.1| rplD [Mycobacterium bovis BCG]
Length = 223
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 99/164 (60%), Gaps = 2/164 (1%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L ++FDVP ++H+VV Q A +QGTHSTKT EVSG G+KP+RQKGTGRAR
Sbjct: 22 GAIELPAELFDVPANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL-EVPS 230
G+ R PQF GG +HGPKPR ++ + KK+ L+ ALS RA G++ +L E +
Sbjct: 82 QGSTRAPQFTGGGVVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVEGQN 141
Query: 231 HKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
TK + + K+VL+ G E + + +NL V++L
Sbjct: 142 PSTKSARAFLVSLTERKQVLVVIGRS-DEGRRESVRNLPGVHIL 184
>gi|450143943|ref|ZP_21873723.1| 50S ribosomal protein L4 [Streptococcus mutans 1ID3]
gi|450174745|ref|ZP_21884776.1| 50S ribosomal protein L4 [Streptococcus mutans SM1]
gi|449151422|gb|EMB55160.1| 50S ribosomal protein L4 [Streptococcus mutans 1ID3]
gi|449248201|gb|EMC46462.1| 50S ribosomal protein L4 [Streptococcus mutans SM1]
Length = 207
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 99/174 (56%), Gaps = 5/174 (2%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G + L +F + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGEVTLNDAIFGIEPNESVVFDVIISQRANLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+ KL +KVRRL LK SA+ A+ K + + L
Sbjct: 72 RARQGSIRAPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVADEKFVAVDALSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRS 280
+ KTK + KVL L +G ++ KL+ +NL V V + S
Sbjct: 132 EAPKTKEFATVLAALNVDSKVLVILEEG---NQAAKLSARNLPNVKVATAATAS 182
>gi|407982446|ref|ZP_11163122.1| 50S ribosomal protein L4 [Mycobacterium hassiacum DSM 44199]
gi|407375958|gb|EKF24898.1| 50S ribosomal protein L4 [Mycobacterium hassiacum DSM 44199]
Length = 211
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 2/165 (1%)
Query: 111 KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRA 170
+G + L ++FDV ++H+VV QLA +QGTHSTKT EVSG G+KP+RQKGTGRA
Sbjct: 9 EGSVELPAELFDVEPNIPLMHQVVTAQLAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRA 68
Query: 171 RHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL-LVFEDLEVP 229
R G+ R PQF GG T+HGPKPR ++ + KK+ L+ ALS RA G++ V E +E
Sbjct: 69 RQGSTRAPQFTGGGTVHGPKPRDYSQRTPKKMIAAALRGALSDRARNGRIHAVTELVEGQ 128
Query: 230 SHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+ TK + + + KVL+ G K + +NL V+V+
Sbjct: 129 TPSTKKAKAFLATLTDRPKVLVVIGRADETGAK-SVRNLPGVHVI 172
>gi|421205633|ref|ZP_15662700.1| 50S ribosomal protein L4 [Streptococcus pneumoniae 2090008]
gi|421228894|ref|ZP_15685572.1| 50S ribosomal protein L4 [Streptococcus pneumoniae 2061376]
gi|421291022|ref|ZP_15741766.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA56348]
gi|421310919|ref|ZP_15761532.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA58981]
gi|395578054|gb|EJG38582.1| 50S ribosomal protein L4 [Streptococcus pneumoniae 2090008]
gi|395598561|gb|EJG58762.1| 50S ribosomal protein L4 [Streptococcus pneumoniae 2061376]
gi|395896822|gb|EJH07787.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA56348]
gi|395913879|gb|EJH24728.1| 50S ribosomal protein L4 [Streptococcus pneumoniae GA58981]
Length = 207
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 101/180 (56%), Gaps = 9/180 (5%)
Query: 109 EDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTG 168
++ G +VL VF + + ++ V+ Q A +QGTH+ K S VSG G+KPWRQKGTG
Sbjct: 12 KEAGQVVLNDAVFGIEPNESVVFDVIISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTG 71
Query: 169 RARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEV 228
RAR G++R PQ+RGG + GP PRS+ KL +KVRRL LK+ S + AE K + + L
Sbjct: 72 RARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKLVYSEKVAENKFVAVDALSF 131
Query: 229 PSHKTKFIVNYYNQMENTKKVL--LCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ KT + KVL L +G +E L+ +NL V V +TT S L
Sbjct: 132 TAPKTAEFAKVLAALSIDSKVLVILEEG---NEFAALSARNLPNVK----VATATTASVL 184
>gi|420198155|ref|ZP_14703872.1| 50S ribosomal protein L4 [Staphylococcus epidermidis NIHLM020]
gi|394264889|gb|EJE09558.1| 50S ribosomal protein L4 [Staphylococcus epidermidis NIHLM020]
Length = 207
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 83/141 (58%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L VF + + ++ + Q A +QGTH+ K S V G G+KPWRQKGTGRAR
Sbjct: 15 GSVELNDAVFAIELNNSVLFEAINLQRASLRQGTHAVKNRSAVRGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
GT+R PQ+RGG + GP PRS+A K+ KK+RRL L+ ALS + E + + +
Sbjct: 75 QGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQENSFTIVDTFGFEAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLC 252
KTK N +E KKVL+
Sbjct: 135 KTKEFKNVLTTLEQPKKVLVV 155
>gi|336055415|ref|YP_004563702.1| 50S ribosomal protein L4 [Lactobacillus kefiranofaciens ZW3]
gi|333958792|gb|AEG41600.1| 50S ribosomal protein L4 [Lactobacillus kefiranofaciens ZW3]
Length = 205
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 100/175 (57%), Gaps = 3/175 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V + +D G + L VF + + ++ + Q A ++QGT K S V G GKK
Sbjct: 4 LKVMDQNGKDSGEVTLNDKVFGIEPNESVVFEAIIRQRAGKRQGTSKVKNRSAVRGGGKK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G++R PQ+RGG T+ GP PRS+A + +K RRL +K LS + + L
Sbjct: 64 PWRQKGTGRARQGSIRAPQWRGGGTVFGPTPRSYAYTMPRKQRRLAIKSVLSQKLIDNDL 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + L + + KTK +V+ + + KVL+ ++L+ +NL V +P
Sbjct: 124 IVLDKLTMSASKTKDLVSMLSSLNVDGKVLVV---SDDNNVQLSARNLAKVKAVP 175
>gi|313889542|ref|ZP_07823187.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus SPIN 20026]
gi|416853002|ref|ZP_11910147.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus LQ 940-04]
gi|313122051|gb|EFR45145.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus SPIN 20026]
gi|356740491|gb|EHI65723.1| 50S ribosomal protein L4 [Streptococcus pseudoporcinus LQ 940-04]
Length = 207
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 98/168 (58%), Gaps = 7/168 (4%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
+F + + ++ VV Q A +QGTH+ K S VSG G+KPWRQKGTGRAR G++R PQ
Sbjct: 23 IFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGRKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS+ KL +KVRRL LK SA+ AE K + E L + KT
Sbjct: 83 WRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDKFVAVEGLSFAAPKTAEFAKV 142
Query: 240 YNQME-NTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286
+ + +TK +++ + G +E L+ +NL V V +TT S L
Sbjct: 143 LSALSIDTKVLVIVEEG--NEFAALSARNLPNVK----VATATTASVL 184
>gi|389816125|ref|ZP_10207312.1| 50S ribosomal protein L4 [Planococcus antarcticus DSM 14505]
gi|388465389|gb|EIM07707.1| 50S ribosomal protein L4 [Planococcus antarcticus DSM 14505]
Length = 207
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF + + ++ V Q A +QG H K SEV+G GKKPWRQKGTGRAR G++R PQ
Sbjct: 23 VFGIEPNESVLFDAVVSQRASLRQGNHKVKNRSEVAGGGKKPWRQKGTGRARQGSIRSPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNY 239
+RGG + GP PRS++ KL KKVRRL L+ ALS+ L+V E L + KTK
Sbjct: 83 WRGGGVVFGPTPRSYSYKLPKKVRRLALRSALSSAVVGKNLMVLEGLTFDAPKTKAFTQL 142
Query: 240 YNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ KK L + E + + +NLH + V+ +
Sbjct: 143 IQDLSIGKKALFVT-ADLDENVAKSARNLHGMTVVAA 178
>gi|241889133|ref|ZP_04776437.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379]
gi|241864382|gb|EER68760.1| ribosomal protein, L4/L1 family [Gemella haemolysans ATCC 10379]
Length = 207
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P + F +D G + VF + + ++ + V Q A +QGTH TK SEVSG
Sbjct: 1 MPQLDLFKQDGTKVGAVEANEAVFGIEPNQHVLFQAVTLQRASLRQGTHKTKGRSEVSGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G+KPWRQKGTGRAR G++R PQ+RGG + GP PRS++ K+ +K+RRL L+ ALS++ A
Sbjct: 61 GRKPWRQKGTGRARQGSIRSPQWRGGGIVFGPTPRSYSFKMPRKMRRLALRSALSSKVAA 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
++ E L + KTK + + KKVL
Sbjct: 121 NEVFALESLSFDTIKTKNFKEMLSNLSLEKKVLFV 155
>gi|366163748|ref|ZP_09463503.1| 50S ribosomal protein L4 [Acetivibrio cellulolyticus CD2]
Length = 207
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 90/146 (61%), Gaps = 7/146 (4%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L+ VF + + K+++H+ V QLA ++QGT STKT SEV G G KPW+QKGTGRAR
Sbjct: 15 GDIDLSEAVFGIDVNKEVVHQAVVNQLANKRQGTQSTKTKSEVRGGGIKPWKQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R Q+ G + GPKPRS+ L KKV+RL LK LS++ +E +++V + L
Sbjct: 75 QGSIRSAQWIKGGIVLGPKPRSYRYTLPKKVKRLALKSVLSSKVSENEIIVLDKLNFDKI 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCI 257
KTK QM K L DG +
Sbjct: 135 KTK-------QMAEVLKNLKIDGTAV 153
>gi|312880371|ref|ZP_07740171.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260]
gi|310783662|gb|EFQ24060.1| LSU ribosomal protein L4P [Aminomonas paucivorans DSM 12260]
Length = 208
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 90/149 (60%)
Query: 104 TNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWR 163
NF + G L+ VF P+ +H+VV LA + GTH TK EV G G+KPWR
Sbjct: 7 VNFQGDVIGEFELSDAVFSAPVHAPAMHQVVVAHLANCRLGTHDTKDRGEVRGGGRKPWR 66
Query: 164 QKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVF 223
QK TGRAR G+ R P + GG HGP PR + K+NKKVRRL L+ AL+ +A E LLV
Sbjct: 67 QKHTGRARQGSTRSPIWVGGGVAHGPHPRDYHQKVNKKVRRLALRSALTLKAQEEVLLVL 126
Query: 224 EDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
+ ++ + KTK ++ + ++++ KK LL
Sbjct: 127 DRFDLDAPKTKAMLAFLGKVQSGKKPLLV 155
>gi|403412314|emb|CCL99014.1| predicted protein [Fibroporia radiculosa]
Length = 287
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 99/176 (56%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
LV+P + + + L VF PIR+DI+H V L +QGT STKT EV G+G
Sbjct: 70 LVLPTEDSSSASDNVVELDPHVFSHPIRRDILHLCVVHHLDSLRQGTASTKTRGEVRGSG 129
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
+K QKGTGRAR G + P RGG GPKPR + KLN+KV ++G+++ALSAR E
Sbjct: 130 RKIRPQKGTGRARLGDGQSPMLRGGGIAFGPKPRDFSTKLNRKVIQMGMRVALSARVKEN 189
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L + E L+ P KT+ ++ K + + + E L+ A++N+ +V +
Sbjct: 190 SLGIVESLDWPGAKTREFARRIEELGWKKTLFVSGHQSLPEGLQRASRNMKHVAAV 245
>gi|323340375|ref|ZP_08080632.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644]
gi|347524785|ref|YP_004831533.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 27782]
gi|417974567|ref|ZP_12615376.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644]
gi|323092151|gb|EFZ34766.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644]
gi|345283744|gb|AEN77597.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 27782]
gi|346329013|gb|EGX97323.1| 50S ribosomal protein L4 [Lactobacillus ruminis ATCC 25644]
Length = 207
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 101 IPVTNFFNED---KGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P F +D G + L VF + +++ V Q A +QGTH+ K S V G
Sbjct: 1 MPTVALFKQDGTQNGDVQLNDAVFGIEPNNNVVFDAVIMQRASLRQGTHAVKNRSAVRGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRAR G++R PQ+ GG T+ GP PRS+A KL +KVRRL +K LS + +
Sbjct: 61 GKKPWRQKGTGRARQGSIRSPQWVGGGTVFGPTPRSYAYKLPRKVRRLAIKSVLSQKVLD 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLC 252
L+V + L + KTK N ++ KVL+
Sbjct: 121 NSLVVVDALTFEAPKTKAFAEVLNNLDVKSKVLVV 155
>gi|393198948|ref|YP_006460790.1| 50S ribosomal protein L4 [Solibacillus silvestris StLB046]
gi|327438279|dbj|BAK14644.1| ribosomal protein L4 [Solibacillus silvestris StLB046]
Length = 207
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + + ++ V Q A +QG H K S V+G G+KPWRQKGTGRAR
Sbjct: 15 GEIELNDAIFGIEPNEAVLFDAVVAQRASLRQGNHKVKNRSAVAGGGRKPWRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
G++R PQ+RGG + GP PRS++ KL KKVRRL +K ALSA+ E L+V + L +
Sbjct: 75 QGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSALSAKVLEQNLVVLDALLFDAP 134
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
KTK + +E +KK L ++E L+ +N+ V VL
Sbjct: 135 KTKDFKSVLAALEISKKALFVT-AEVNENAILSARNIPGVTVL 176
>gi|333398803|ref|ZP_08480616.1| 50S ribosomal protein L4 [Leuconostoc gelidum KCTC 3527]
gi|406600631|ref|YP_006745977.1| 50S ribosomal protein L4 [Leuconostoc gelidum JB7]
gi|406372166|gb|AFS41091.1| 50S ribosomal protein L4 [Leuconostoc gelidum JB7]
Length = 207
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V +I V Q A +QGTH+ K S VSG G+KPW+QKGTGRAR G++R PQ
Sbjct: 23 VFAVEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRARAGSIREPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTK-FIVN 238
FRGG + GP PRS+A ++N+K +L LK LS + EGKL+V + L + KT+ F
Sbjct: 83 FRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVTEGKLVVVDALSFEAPKTQDFKKV 142
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
N +TK +++ D +E L+ +NL V V+ +
Sbjct: 143 LANLSVDTKTLVVVDED--NENAILSARNLSNVQVMTT 178
>gi|300174030|ref|YP_003773196.1| 50S ribosomal protein L4 [Leuconostoc gasicomitatum LMG 18811]
gi|333448294|ref|ZP_08483236.1| 50S ribosomal protein L4 [Leuconostoc inhae KCTC 3774]
gi|299888409|emb|CBL92377.1| 50S ribosomal protein L4 [Leuconostoc gasicomitatum LMG 18811]
Length = 207
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Query: 120 VFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179
VF V +I V Q A +QGTH+ K S VSG G+KPW+QKGTGRAR G++R PQ
Sbjct: 23 VFAVEPNNAVITDAVLMQRASMRQGTHAVKNRSAVSGGGRKPWKQKGTGRARAGSIREPQ 82
Query: 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTK-FIVN 238
FRGG + GP PRS+A ++N+K +L LK LS + EGKL+V + L + KT+ F
Sbjct: 83 FRGGGIVFGPSPRSYAYRINRKAYQLALKSVLSQKVTEGKLVVVDALSFEAPKTQDFKKV 142
Query: 239 YYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
N +TK +++ D +E L+ +NL V V+
Sbjct: 143 LANLSVDTKTLVVVDED--NENAILSARNLSNVQVM 176
>gi|309812335|ref|ZP_07706090.1| 50S ribosomal protein L4 [Dermacoccus sp. Ellin185]
gi|308433640|gb|EFP57517.1| 50S ribosomal protein L4 [Dermacoccus sp. Ellin185]
Length = 214
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 100/166 (60%), Gaps = 6/166 (3%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L D+FDV +IH+VV QLA +QGTH TKT EV G G+KP+RQKGTGRAR
Sbjct: 15 GSVELPADIFDVATNVPLIHQVVVAQLAAARQGTHKTKTRGEVRGGGRKPYRQKGTGRAR 74
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL---EV 228
G+ R PQF GG T+HGP+PR ++ + KK++ L+ ALS RA ++ V E + E
Sbjct: 75 QGSTRAPQFAGGGTVHGPQPRDYSQRTPKKMKAAALRGALSDRARFERIHVLESVVAGEA 134
Query: 229 PSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
PS TK + + + K +L+ + +L+ +NL V+VL
Sbjct: 135 PS--TKAAAKFLGTLSDRKNLLVVI-DRMDSVSELSVRNLPNVHVL 177
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,759,310,964
Number of Sequences: 23463169
Number of extensions: 200505327
Number of successful extensions: 411140
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3315
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 406908
Number of HSP's gapped (non-prelim): 3423
length of query: 299
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 158
effective length of database: 9,050,888,538
effective search space: 1430040389004
effective search space used: 1430040389004
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)