BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022312
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6IRQ7|RL4_RHOCS 50S ribosomal protein L4 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplD PE=3 SV=1
Length = 206
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V N NE G + LA +VF +P R+DI+ R+V WQLAKR+QGTH TK ISE++GT KKPW
Sbjct: 5 VKNLNNETVGEIELADEVFGLPTRQDILTRMVLWQLAKRRQGTHKTKGISEIAGTTKKPW 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTGRAR G+ R PQFRGG + GP RSH L KKVR+L LK ALS +AAEGKL V
Sbjct: 65 RQKGTGRARQGSTRSPQFRGGARIFGPVVRSHEHDLTKKVRKLALKTALSTKAAEGKLFV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
E + +HKTK + + T L+ DG + E A +N+ +++VLP
Sbjct: 125 LEAAKADTHKTKALAAQLKTLGLT-SALIIDGANLDETFVRAARNIPHLDVLPE 177
>sp|Q2W2J2|RL4_MAGSA 50S ribosomal protein L4 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplD PE=3 SV=1
Length = 206
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 115/174 (66%), Gaps = 1/174 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V + N+ G + LA ++F VP+R DI+ R V WQLAKRQ G H TKTISE+SGT KKP+
Sbjct: 5 VISLDNQTVGEIELADEIFGVPVRGDILFRAVNWQLAKRQSGNHKTKTISEISGTTKKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QKG GRAR G+LR QFRGG+T+ GP RSHA L KKVR+L LK ALSA+ A+GKL+V
Sbjct: 65 AQKGGGRARQGSLRSAQFRGGSTIFGPVVRSHAHDLPKKVRKLALKTALSAKVADGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ S KTK + ++ VL DG + LA++N+ YV+VLP+
Sbjct: 125 VDAASAGSPKTKDLAARLGKL-GLSSVLFIDGAAVDGNFALASRNIPYVDVLPT 177
>sp|Q2RQW1|RL4_RHORT 50S ribosomal protein L4 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplD PE=3 SV=1
Length = 206
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 1/174 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ VF +P+R D++HR+VRWQLA+RQ GTH TK ISE+SGT KP+
Sbjct: 5 VKTLDGKDAGSIELSDSVFGLPVRTDLLHRMVRWQLARRQAGTHKTKGISEISGTTAKPF 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTG AR G+ R PQFRGG T+ GP RSHA LNKKVR+LGLK ALSA+A G+L+V
Sbjct: 65 KQKGTGHARQGSKRSPQFRGGATIFGPVVRSHAHDLNKKVRKLGLKTALSAKAQAGQLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPS 276
+ S KTK ++ + +KVL DG ++EK LA +N+ ++VLP
Sbjct: 125 LDQAISESGKTKDLLAQLKVL-GLEKVLFIDGPEVNEKFALAARNIIGLDVLPQ 177
>sp|Q11HQ3|RL4_MESSB 50S ribosomal protein L4 OS=Mesorhizobium sp. (strain BNC1) GN=rplD
PE=3 SV=1
Length = 206
Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 112/175 (64%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ VT +D G + ++ ++F + R+DI+HRVVRWQLAKRQQGTH K +E++ TG K
Sbjct: 3 LKVTTLAGKDAGKVEVSDEIFGLDPREDILHRVVRWQLAKRQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
+RQKGTGRARH + R PQFRGG HGP P SHA L KKVR LGLK ALSA+A L
Sbjct: 63 MYRQKGTGRARHSSARAPQFRGGGKAHGPVPHSHAHDLPKKVRALGLKHALSAKAKSANL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL + KTK +V + ++ T L+ G I K A N+ ++VLP
Sbjct: 123 IIVDDLAIKEAKTKALVESFAKLGVT-NALMIGGAEIDAGFKRAAANIPNIDVLP 176
>sp|Q1RHM2|RL4_RICBR 50S ribosomal protein L4 OS=Rickettsia bellii (strain RML369-C)
GN=rplD PE=3 SV=1
Length = 207
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 114/176 (64%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG +HGP RSHA KL KKVR+LGL ALS + +EGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ + KT +VN N+ + K + DG + LA QN++ V+P +
Sbjct: 125 VIDSLKLETPKTSNLVNILNKFQG-KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQI 179
>sp|A8GVB5|RL4_RICB8 50S ribosomal protein L4 OS=Rickettsia bellii (strain OSU 85-389)
GN=rplD PE=3 SV=1
Length = 207
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/176 (50%), Positives = 114/176 (64%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ N NE+ G + L D+F V IR DII +VV WQ AK GTH TKT+SEVSGT KKP
Sbjct: 5 ILNLANEEIGEISLNEDIFAVEFIRDDIIKQVVDWQRAKAMAGTHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG +HGP RSHA KL KKVR+LGL ALS + +EGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVIHGPVVRSHATKLPKKVRKLGLIHALSEKFSEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ + KT +VN N+ + K + DG + LA QN++ V+P +
Sbjct: 125 VIDSLKLETPKTSNLVNILNKFQG-KSFFVIDGNEVDVNFSLAAQNIYNTVVVPQI 179
>sp|Q68W79|RL4_RICTY 50S ribosomal protein L4 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rplD PE=3 SV=1
Length = 207
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + A GKLL
Sbjct: 65 FKQKGTGNARQGSLRSIQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKCAAGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ L++ KT +VN N+ + + + DG + LAT+N++ ++P +
Sbjct: 125 IINSLKLEKPKTSVLVNLLNKFQG-QSFFIIDGNKVDTNFSLATKNIYNTLIVPQI 179
>sp|Q4UMS8|RL4_RICFE 50S ribosomal protein L4 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rplD PE=3 SV=1
Length = 207
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDTNFSLAAKNIYNTVIVPQI 179
>sp|A8GT68|RL4_RICRS 50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rplD PE=3 SV=1
Length = 207
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ V+P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVVVPQI 179
>sp|B0BUQ9|RL4_RICRO 50S ribosomal protein L4 OS=Rickettsia rickettsii (strain Iowa)
GN=rplD PE=3 SV=1
Length = 207
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ V+P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVVVPQI 179
>sp|C4K2H8|RL4_RICPU 50S ribosomal protein L4 OS=Rickettsia peacockii (strain Rustic)
GN=rplD PE=3 SV=1
Length = 207
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSVLVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>sp|A8EZL5|RL4_RICCK 50S ribosomal protein L4 OS=Rickettsia canadensis (strain McKiel)
GN=rplD PE=3 SV=1
Length = 207
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 112/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNKDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP RSHA +L KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGLAHGPIVRSHATQLPKKVRKLGLIHALSEKFAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT F+VN N+ + + + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSFLVNILNKFQG-QSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>sp|Q92GW7|RL4_RICCN 50S ribosomal protein L4 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rplD PE=3 SV=1
Length = 207
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
V + L++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 125 VIDSLKLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>sp|C3PPA6|RL4_RICAE 50S ribosomal protein L4 OS=Rickettsia africae (strain ESF-5)
GN=rplD PE=3 SV=1
Length = 207
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 108 NEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKG 166
NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEV GT KKP++QKG
Sbjct: 10 NEEVGEISLNEDIFAVEFIRDDIIKQVIDWQRAKAMSGNHKTKTVSEVLGTTKKPFKQKG 69
Query: 167 TGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL 226
TG AR G+LR Q RGG HGP+ RSHA KL KKVR+LGL ALS + AEGKLLV + L
Sbjct: 70 TGNARQGSLRSVQMRGGGVAHGPRVRSHATKLPKKVRKLGLIHALSEKCAEGKLLVIDSL 129
Query: 227 EVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
++ KT +VN N+ + K + DG + LA +N++ ++P +
Sbjct: 130 KLDKPKTSALVNILNKFQG-KSFFVIDGNEVDINFSLAAKNIYNTVIVPQI 179
>sp|Q9ZCQ6|RL4_RICPR 50S ribosomal protein L4 OS=Rickettsia prowazekii (strain Madrid E)
GN=rplD PE=3 SV=1
Length = 207
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR DII +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEITLNKDIFAVEFIRDDIIKQVIDWQRAKAMFGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGPK RSHAIKL KKVR+LGL ALS + AE KLL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGISHGPKVRSHAIKLPKKVRKLGLIHALSEKYAEEKLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+ + L++ KT +VN ++ + + + DG + LAT+N++ ++P +
Sbjct: 125 IIDSLKLDKPKTSILVNLLSKFQG-QSFFVIDGNKVDINFSLATKNIYNTLIVPQI 179
>sp|A8GPE9|RL4_RICAH 50S ribosomal protein L4 OS=Rickettsia akari (strain Hartford)
GN=rplD PE=3 SV=1
Length = 207
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVP-IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKP 161
+ + NE+ G + L D+F V IR D+I +V+ WQ AK G H TKT+SEVSGT KKP
Sbjct: 5 ILSLANEEVGEISLNEDIFAVEFIRDDVIKQVIDWQRAKAMSGNHKTKTVSEVSGTTKKP 64
Query: 162 WRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLL 221
++QKGTG AR G+LR Q RGG HGP+ RSH KL KKVR+LGL ALS + AEG+LL
Sbjct: 65 FKQKGTGNARQGSLRSVQMRGGGVAHGPRVRSHVTKLPKKVRKLGLIHALSEKFAEGRLL 124
Query: 222 VFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRST 281
V + L++ KT +VN ++ + K + DG + LA +N++ ++P + +
Sbjct: 125 VIDSLKLDQPKTSALVNILSKFQG-KSFFVIDGNEVDTNFSLAAKNIYNTAIVPQ-IGAN 182
Query: 282 TQSFLIYYYFL 292
+ Y Y L
Sbjct: 183 VYDIIRYEYVL 193
>sp|Q2GL58|RL4_ANAPZ 50S ribosomal protein L4 OS=Anaplasma phagocytophilum (strain HZ)
GN=rplD PE=3 SV=1
Length = 208
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 107/177 (60%), Gaps = 1/177 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ + N NE G + L VF + R+D++ VV WQLAKR+ GTH K IS++SGT K
Sbjct: 3 VNIVNIANEVVGSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP PRSH LNKKVRRLGLK+ALS + A KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVPRSHEYSLNKKVRRLGLKVALSMKVAANKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+V + L+V KT + L+ C E ++ A +NL V++L V
Sbjct: 123 VVLDSLDVDLKKTADAKGVFGNFAGHSSYLVVSESCKEEVVR-ACRNLRGVDLLKCV 178
>sp|C3MAY1|RL4_RHISN 50S ribosomal protein L4 OS=Rhizobium sp. (strain NGR234) GN=rplD
PE=3 SV=1
Length = 206
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EV+ TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP
Sbjct: 123 IVLDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIENNFKLAAQNIPNVDVLP 176
>sp|A6U860|RL4_SINMW 50S ribosomal protein L4 OS=Sinorhizobium medicae (strain WSM419)
GN=rplD PE=3 SV=1
Length = 206
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKAKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KKVR LGL+ ALSA+ ++
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALGLRHALSAKLKAEEI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK + + + T L+ G I KLA QN+ V+VLP
Sbjct: 123 IIVDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIEGNFKLAAQNIPNVDVLP 176
>sp|Q92QG9|RL4_RHIME 50S ribosomal protein L4 OS=Rhizobium meliloti (strain 1021)
GN=rplD PE=3 SV=1
Length = 206
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V +D G + L+ +F + R+DII RVVRWQLAKRQQGTH +K +EVS TG K
Sbjct: 3 LTVKTLEGKDAGKVSLSDAIFGLEPREDIIARVVRWQLAKRQQGTHKSKGRAEVSRTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL+ ALSA+ +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKIRALGLRHALSAKLKAEDI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V +DL KTK + + + T L+ G I KLA QN+ V+VLP
Sbjct: 123 IVIDDLVANEAKTKALAGAFASLGLT-NALIIGGAEIEGNFKLAAQNIPNVDVLP 176
>sp|B6JET4|RL4_OLICO 50S ribosomal protein L4 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplD PE=3 SV=1
Length = 206
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ +F + R DII RVV WQLAKRQ GTH TK +E++ TG
Sbjct: 1 MELNVTTLEGKAAGSVNLSDTIFGLEPRTDIIQRVVNWQLAKRQAGTHKTKGRAEIARTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR LGL+ ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYDLPKKVRALGLRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++ E+ KTK ++ +++ + T L+ DG ++ A +N+ +++VLP
Sbjct: 121 SLVVLDNAELKDAKTKALIGHFSGLGLT-SALIVDGAEVNNGFAQAARNIPHIDVLP 176
>sp|Q5PA59|RL4_ANAMM 50S ribosomal protein L4 OS=Anaplasma marginale (strain St. Maries)
GN=rplD PE=3 SV=1
Length = 208
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 92/125 (73%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 LVFED 225
+V +D
Sbjct: 123 VVLDD 127
>sp|B9KJ69|RL4_ANAMF 50S ribosomal protein L4 OS=Anaplasma marginale (strain Florida)
GN=rplD PE=3 SV=1
Length = 208
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 92/125 (73%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N NE G + L+ +VF V +R+D++ VV WQLAKR+ GTH T+ IS+VSGT K
Sbjct: 3 VNVVNIKNEVVGKVQLSAEVFGVQLRRDVLRDVVTWQLAKRRAGTHKTRCISDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVRRLGLK+ALS + ++ KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVVFGPVNRSHAYSLNKKVRRLGLKVALSMKVSDSKL 122
Query: 221 LVFED 225
+V +D
Sbjct: 123 VVLDD 127
>sp|A7IFY2|RL4_XANP2 50S ribosomal protein L4 OS=Xanthobacter autotrophicus (strain ATCC
BAA-1158 / Py2) GN=rplD PE=3 SV=1
Length = 206
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I V + G + L+ ++F + R DI+HR V WQL++RQ GTH TK SE++ T KK
Sbjct: 3 ITVKTLDGIEAGSVTLSDEIFGLEPRADILHRCVTWQLSRRQAGTHRTKGRSEINRTSKK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTG ARHG PQFRGG GP RSHAI L KKVR L LK ALS++A ++
Sbjct: 63 MYKQKGTGNARHGAASAPQFRGGGRAFGPVVRSHAIDLPKKVRALALKHALSSKAKAAQI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V + + + KTK + ++ ++ + VL+ DG + + + LA +NL YV+VLP
Sbjct: 123 IVLDKVSLDDPKTKALKEHFAKL-GLESVLIVDGAQVEQNVALAARNLPYVDVLP 176
>sp|B9KL92|RL4_RHOSK 50S ribosomal protein L4 OS=Rhodobacter sphaeroides (strain KD131 /
KCTC 12085) GN=rplD PE=3 SV=1
Length = 206
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVLEDIALAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + ++ K+VL+ DG I+E A +NL V+VLPS+
Sbjct: 134 KTAMLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGVDVLPSI 178
>sp|A4WVK7|RL4_RHOS5 50S ribosomal protein L4 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rplD PE=3 SV=1
Length = 206
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVIEDIAMSEA 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + ++ K+VL+ DG I+E A +NL ++VLPS+
Sbjct: 134 KTALLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGIDVLPSI 178
>sp|Q3J5S1|RL4_RHOS4 50S ribosomal protein L4 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplD PE=3 SV=1
Length = 206
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVLEDIALAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + ++ K+VL+ DG I+E A +NL V+VLPS+
Sbjct: 134 KTAMLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGVDVLPSI 178
>sp|A3PGL2|RL4_RHOS1 50S ribosomal protein L4 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rplD PE=3 SV=1
Length = 206
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/166 (48%), Positives = 104/166 (62%), Gaps = 1/166 (0%)
Query: 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 171
G + L +F + R DI+HRVVRWQ AK Q GTHS S+VS + KK +RQKGTG AR
Sbjct: 14 GSIELDDAIFGLEPRADILHRVVRWQRAKAQAGTHSVLGKSDVSYSTKKIYRQKGTGGAR 73
Query: 172 HGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSH 231
HG+ + P FR G GP PRSHA LNKK R LGLK ALS++A G L+V ED+ +
Sbjct: 74 HGSKKAPIFRHGGVYKGPTPRSHAHDLNKKFRALGLKHALSSKATTGNLIVLEDIALAEG 133
Query: 232 KTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KT + ++ K+VL+ DG I+E A +NL V+VLPS+
Sbjct: 134 KTAMLAKAVKEL-GWKRVLVIDGADINENFAKAARNLEGVDVLPSI 178
>sp|Q98N56|RL4_RHILO 50S ribosomal protein L4 OS=Rhizobium loti (strain MAFF303099)
GN=rplD PE=3 SV=1
Length = 206
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L+ ++F + R+DI+ RVVRWQLAK+QQGTH K +E++ TG K
Sbjct: 3 LKITTLGGKDAGKVKLSEEIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP RSH L K VR LGLK ALSA+A +
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKNVRALGLKHALSAKAKSASI 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+V ++L++ KTK ++ + + L+ G + + KLA N+ ++VLP
Sbjct: 123 IVIDELKLTEAKTKALIANFATL-GLSNALVIGGAELDKNFKLAATNIPNIDVLP 176
>sp|Q8UE19|RL4_AGRT5 50S ribosomal protein L4 OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=rplD PE=3 SV=1
Length = 206
Score = 148 bits (373), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ R+VRWQLAK+QQGTH TK SEVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSHA L KKVR L L+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHDLPKKVRALALRHALSAKLKAE 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
+L++ + L KTK ++ + + T L+ G + KLA QN+ V+VLP
Sbjct: 121 ELIIVDQLVASEAKTKALLGSFASLGLT-NALVIGGAELDGNFKLAAQNIPNVDVLP 176
>sp|Q1QN29|RL4_NITHX 50S ribosomal protein L4 OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=rplD PE=3 SV=1
Length = 206
Score = 148 bits (373), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 109/177 (61%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT G + L+ +F + RKD+I R V WQLAKRQ GTH TK +E+ TG
Sbjct: 1 MELNVTTLEGNAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTHKTKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L L+ ALSA+A +G
Sbjct: 61 KKMFKQKGTGNARHGSARVPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + E+ KTK +V +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 GLIVIDSAELNEAKTKALVGHFSGLGLT-NALIVDGAAVHAGFATAARNIPNIDVLP 176
>sp|C6C186|RL4_DESAD 50S ribosomal protein L4 OS=Desulfovibrio salexigens (strain ATCC
14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplD PE=3
SV=1
Length = 206
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/174 (43%), Positives = 115/174 (66%), Gaps = 2/174 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
I + + ++ G M LA +VF+VP++ +I+H VVR QLA ++QGTH+TKT G G K
Sbjct: 4 ITIYDQTKKEVGSMDLAPEVFEVPVKPEILHLVVRSQLAAKRQGTHATKTRGMKRGGGAK 63
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
PWRQKGTGRAR G+ R P +RGG T GP+PR ++ K+NKKVRRL LK+AL++R +E K+
Sbjct: 64 PWRQKGTGRARAGSTRSPLWRGGGTTFGPQPRDYSFKVNKKVRRLALKMALTSRLSEEKM 123
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
+V +++++P KTK V + K +++ KL L+ +N+ + ++
Sbjct: 124 MVVKNIDLPEIKTKLFVEVAEALGLEKALVVVKDA--DNKLLLSARNIPGIKLI 175
>sp|P61067|RL4_ONYPE 50S ribosomal protein L4 OS=Onion yellows phytoplasma (strain OY-M)
GN=rplD PE=3 SV=1
Length = 207
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 112/174 (64%), Gaps = 4/174 (2%)
Query: 101 IPVTNFFNEDKGFM---VLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+P N N+ F+ VLA VFD+ + +++ VV Q A +QGTH+TKT + V+G
Sbjct: 1 MPKINILNQQGDFVSEKVLATTVFDIKPNQQVLYDVVNAQRAAMRQGTHATKTRALVAGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
GKKPWRQKGTGRARHG++R P +RGG GP PR +++K+N+KVR L LK ALS +A
Sbjct: 61 GKKPWRQKGTGRARHGSIRSPLWRGGGVTFGPSPRDYSVKVNQKVRSLALKSALSLQAKN 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271
+L+V +++ + +HKTK ++ T K L+ + E+L LA++NL Y+
Sbjct: 121 NQLVVVDNINLATHKTKDFQQMLQKLNITSKSLIVVTQ-MTEQLALASRNLSYI 173
>sp|Q07KL9|RL4_RHOP5 50S ribosomal protein L4 OS=Rhodopseudomonas palustris (strain
BisA53) GN=rplD PE=3 SV=1
Length = 206
Score = 147 bits (371), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT +D G + L+ ++F + R DII R V WQLAKRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKDAGSVQLSDEIFGLDPRSDIIQRCVIWQLAKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR + LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRAMALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + + S KTK +V ++ + T L+ DG ++ +A +N+ ++VLP
Sbjct: 121 GLIVIDQATLDSAKTKALVGHFAGLGLT-SALIIDGAELNNGFAVAARNIPNIDVLP 176
>sp|A9IW26|RL4_BART1 50S ribosomal protein L4 OS=Bartonella tribocorum (strain CIP
105476 / IBS 506) GN=rplD PE=3 SV=1
Length = 206
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
Query: 98 DLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
DLVI + + G + ++ +FD+ R+DI+ RVVRWQLA+RQQGTH ++ S+VS T
Sbjct: 2 DLVIKTLD--GHEAGKLKVSESIFDLVPREDILQRVVRWQLARRQQGTHQSQGRSDVSRT 59
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G K ++QKGTGRARH + R PQFRGG HGP RSHA L KK+R LGL++ALSA+
Sbjct: 60 GAKMFKQKGTGRARHSSARAPQFRGGGKAHGPVFRSHAHDLPKKIRALGLRLALSAKLKA 119
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V ++L V KTK +V++++++ LL G I A N+ ++VLP
Sbjct: 120 KDLIVVDELAVKDAKTKKLVSHFSKL-GFNNALLIGGQEIDINFFRAASNIPNIDVLP 176
>sp|Q5GSU5|RL4_WOLTR 50S ribosomal protein L4 OS=Wolbachia sp. subsp. Brugia malayi
(strain TRS) GN=rplD PE=3 SV=1
Length = 204
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 106/175 (60%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N N D G L +F V + I+H +VRWQLAKR+ GTH K IS+VSGT KP+
Sbjct: 5 LVNLSNNDVGTTQLNPLIFSVEQKLSILHDIVRWQLAKRRAGTHKVKGISDVSGTTAKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
QK TGRAR G+LR PQFRGG + GP RSHA LNKKVR+ GLK+ALS + ++++
Sbjct: 65 SQKRTGRARQGSLRSPQFRGGGVIFGPIVRSHAYSLNKKVRKFGLKVALSLKYLNNQVII 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
+L + KT + Y + + +++ D + L A +NLHYVN++ +
Sbjct: 125 LNNLNINVKKTSEMCKYIQNFKFSSFLIVGD---YEDSLLRAARNLHYVNLIKPI 176
>sp|Q5FTY4|RL4_GLUOX 50S ribosomal protein L4 OS=Gluconobacter oxydans (strain 621H)
GN=rplD PE=3 SV=1
Length = 204
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/175 (47%), Positives = 105/175 (60%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G + L ++F V R DI+ RVV WQLAKR+ GTH TK + E+SGT KKP+
Sbjct: 5 IKTLDNGSAGSVALPEEIFAVTPRSDIMARVVHWQLAKRRAGTHRTKGMGEISGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQFRTGGVVHGPVVRDHGYDLPKKVRRLGLICALSQKAAEGKLIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
D KT+ + T L+ D G + E+ A NL ++VLP++
Sbjct: 125 L-DAANGVTKTREAAAKIKALGWT-SALIVD-GAVDEQFARAIANLPKIDVLPTI 176
>sp|B5ZYT6|RL4_RHILW 50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplD PE=3 SV=1
Length = 206
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 106/173 (61%), Gaps = 1/173 (0%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
V +D G + L+ +F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG K +
Sbjct: 5 VKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKMY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
+QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL++ALSA+ ++V
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRLALSAKIKADDVIV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 125 IDNLVAAEAKTKALASVFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>sp|Q211E9|RL4_RHOPB 50S ribosomal protein L4 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplD PE=3 SV=1
Length = 206
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/177 (45%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDEIFGLDPRVDIIQRCVNWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAFDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E + + KTK +V +++ + T L+ DG ++ +A +N+ ++VLP
Sbjct: 121 GLIVIESATLEAAKTKALVGHFSGLGLT-SALIIDGAELNNGFAVAARNIPNIDVLP 176
>sp|A5ELM6|RL4_BRASB 50S ribosomal protein L4 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=rplD PE=3 SV=1
Length = 206
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT +D G + L+ +F + R DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKDAGSVQLSDAIFGLEPRVDIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ + + KTK ++ +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLT-NALIIDGAELHNGFAAAARNIPNLDVLP 176
>sp|A9H3R2|RL4_GLUDA 50S ribosomal protein L4 OS=Gluconacetobacter diazotrophicus
(strain ATCC 49037 / DSM 5601 / PAl5) GN=rplD PE=3 SV=1
Length = 204
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 103/175 (58%), Gaps = 3/175 (1%)
Query: 103 VTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW 162
+ N G VL ++F V R DI+ RVV WQLAKR+ GTH K + EVSGT KKP+
Sbjct: 5 IKTLDNGSAGTAVLPDEIFGVTPRADIMARVVHWQLAKRRAGTHKVKGMGEVSGTTKKPY 64
Query: 163 RQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLV 222
RQKGTG AR G+LR PQ+R G +HGP R H L KKVRRLGL ALS +AAEGKL+V
Sbjct: 65 RQKGTGSARQGSLRAPQYRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKAAEGKLVV 124
Query: 223 FEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
D S +T + + K L+ D + E A +NL ++ LP++
Sbjct: 125 L-DAATASGRTSELAAKVKAL-GWKSALIVD-ATVEENFGRAARNLPKIDALPTI 176
>sp|Q30Z43|RL4_DESDG 50S ribosomal protein L4 OS=Desulfovibrio desulfuricans (strain
G20) GN=rplD PE=3 SV=1
Length = 206
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 117/177 (66%), Gaps = 5/177 (2%)
Query: 101 IPVTNFFNEDK---GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGT 157
+ V +++DK G + LA +VF+V +R +I++ VVR Q A ++ GTHS KT S +SG
Sbjct: 1 MAVVKVYDQDKKETGELTLAPEVFEVEVRPEILNLVVRAQRAAKRAGTHSVKTRSTISGG 60
Query: 158 GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAE 217
G KPWRQKGTGRAR G+ R P +RGG + GP+PR ++ K+NKKVR+L LK+ALS+R AE
Sbjct: 61 GAKPWRQKGTGRARSGSNRSPVWRGGAVVFGPQPRDYSFKVNKKVRKLALKMALSSRLAE 120
Query: 218 GKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVL 274
L+V + +E+P KTK +V + K +++ + +KL L+ +N+ + ++
Sbjct: 121 ENLMVVKGIELPEVKTKHMVKVAGALGLGKALVVTP--EMDDKLVLSARNIPGITLM 175
>sp|B3QBX9|RL4_RHOPT 50S ribosomal protein L4 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rplD PE=3 SV=1
Length = 206
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDEIFGLEPRSDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + E+ + KTK +V +++ + + L+ DG ++ A +N+ ++VLP
Sbjct: 121 GLIVLDKAELEAAKTKTLVGHFSGL-GLESALIIDGAEVNNGFAAAARNIPNIDVLP 176
>sp|P61068|RL4_RHOPA 50S ribosomal protein L4 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rplD PE=1 SV=1
Length = 206
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 111/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ ++F + R DII R V WQLAKRQ GTH K +EV TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDEIFGLEPRSDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHAI L KKVR L L+ ALSA+A G
Sbjct: 61 KKMYKQKGTGGARHGSQRVPQFRGGGRAFGPVVRSHAIDLPKKVRVLALRHALSAKAKGG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + E+ + KTK +V +++ + + L+ DG ++ A +N+ ++VLP
Sbjct: 121 GLIVLDKAELEAAKTKTLVGHFSGL-GLESALIIDGAEVNNGFAAAARNIPNIDVLP 176
>sp|Q3SSW5|RL4_NITWN 50S ribosomal protein L4 OS=Nitrobacter winogradskyi (strain Nb-255
/ ATCC 25391) GN=rplD PE=3 SV=1
Length = 206
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT + G + L+ +F + RKD+I R V WQLAK Q GTH TK +E+ TG
Sbjct: 1 MELNVTTLEGKAAGSVHLSDGIFGLEPRKDLIQRCVNWQLAKSQAGTHKTKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L L+ ALSA+A +G
Sbjct: 61 KKLFKQKGTGNARHGSARAPQFRGGGRAFGPVVRSHAHDLPKKVRALALRHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V + +E+ KTK ++ +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 GLIVIDSVELKEAKTKALMGHFSSLGLT-SALIIDGAQVHAGFATAARNIPNIDVLP 176
>sp|Q2K9L5|RL4_RHIEC 50S ribosomal protein L4 OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=rplD PE=3 SV=1
Length = 206
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 108/177 (61%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + V +D G + L+ ++F + R+DI+ RV+RWQLAK+QQGTH K +EVS TG
Sbjct: 1 MELNVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
K ++QKGTGRARH + R PQFRGG HGP RSH L KKVR LGL+ ALSA+
Sbjct: 61 AKMYKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHDLPKKVRALGLRHALSAKIKAD 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++V ++L KTK + + + + T L G + KLA QN+ ++VLP
Sbjct: 121 DVIVIDNLVAAEAKTKALASAFETLGLT-NALFIGGAELDGNFKLAAQNIPNIDVLP 176
>sp|A4YSJ3|RL4_BRASO 50S ribosomal protein L4 OS=Bradyrhizobium sp. (strain ORS278)
GN=rplD PE=3 SV=1
Length = 206
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 1/177 (0%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ + VT ++ G + L+ +F + R DII R V+WQL KRQ GTH K +E+ TG
Sbjct: 1 MELKVTTLEGKEAGSVQLSDAIFGLEPRADIIQRCVQWQLNKRQAGTHKAKGRAEIWRTG 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KK ++QKGTG ARHG+ R PQFRGG GP RSHA L KKVR L LK ALSA+A +G
Sbjct: 61 KKMYKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHATDLPKKVRALALKHALSAKAKDG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
L+V E+ + + KTK ++ +++ + T L+ DG +H A +N+ ++VLP
Sbjct: 121 DLVVLENATLEAAKTKALIGHFSGLGLT-NALIIDGAELHNGFAAAARNIPNLDVLP 176
>sp|Q0BUP9|RL4_GRABC 50S ribosomal protein L4 OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=rplD PE=3 SV=1
Length = 215
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 104/179 (58%), Gaps = 2/179 (1%)
Query: 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTG 158
+ I + N G L ++F R DI+ RVV WQLA R+ GTH K + EVSGT
Sbjct: 1 MQIEIKTLDNGSAGTAELPDEIFAATPRADIMARVVHWQLACRRAGTHKVKGMGEVSGTT 60
Query: 159 KKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEG 218
KKP+RQKGTG AR G+LR PQFR G +HGP R H L KKVRRLGL ALS + AEG
Sbjct: 61 KKPYRQKGTGNARQGSLRAPQFRTGGAVHGPVVRDHGYDLPKKVRRLGLISALSQKQAEG 120
Query: 219 KLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
KL+V D KT+ + + + L+ DG + E A+++L V+VLP++
Sbjct: 121 KLVVI-DTAAGMEKTRDLAAKLRAL-GWRSALIVDGASVDEGFARASRSLLAVDVLPTI 177
>sp|Q5FFU1|RL4_EHRRG 50S ribosomal protein L4 OS=Ehrlichia ruminantium (strain Gardel)
GN=rplD PE=3 SV=1
Length = 205
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 78/177 (44%), Positives = 110/177 (62%), Gaps = 2/177 (1%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ V N +++ G + L +F V R DI+ VV WQL+KR+ G H TKTI +VSGT K
Sbjct: 3 VNVINIESQNIGKIDLNPLIFSVNYRPDILKMVVEWQLSKRRVGAHKTKTIGDVSGTTAK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
P+RQK TGRAR G+LR PQFRGG + GP RSHA LNKKVR LGLK+ALS + + KL
Sbjct: 63 PYRQKHTGRARQGSLRSPQFRGGAVIFGPVVRSHAYSLNKKVRNLGLKVALSLKNSCNKL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLPSV 277
L+ + ++V KT ++ + E+ + L G ++ + + +NLH V +L +
Sbjct: 123 LILDSIDVNFVKTAQVLRFIKNFEH--QSFLIIGKDYNKGMMYSCKNLHNVTLLKQI 177
>sp|Q8G077|RL4_BRUSU 50S ribosomal protein L4 OS=Brucella suis biovar 1 (strain 1330)
GN=rplD PE=3 SV=1
Length = 206
Score = 144 bits (364), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 107/175 (61%), Gaps = 1/175 (0%)
Query: 101 IPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKK 160
+ +T +D G + L ++F + R DI+ RVVRWQLA+RQQG+H + +VS TG K
Sbjct: 3 LTITTLEGKDAGKVKLNEEIFGLDPRDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSK 62
Query: 161 PWRQKGTGRARHGTLRGPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKL 220
++QKGTGRARH + R PQFRGG HGP R+H L KKVR LGL+ ALSA+A L
Sbjct: 63 MYKQKGTGRARHHSARAPQFRGGGQAHGPVVRNHDHDLPKKVRALGLRHALSAKAKASDL 122
Query: 221 LVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275
++ +DL KTK +V+ + ++ + LL G I + A N+ ++VLP
Sbjct: 123 IIIDDLASADAKTKQLVSQFAKL-GLENALLIGGAEIDANFQRAASNIPNIDVLP 176
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,964,718
Number of Sequences: 539616
Number of extensions: 4801713
Number of successful extensions: 10536
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 9554
Number of HSP's gapped (non-prelim): 820
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)