Query 022312
Match_columns 299
No_of_seqs 178 out of 1253
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dmg_A Ribosomal protein L4; a 100.0 2.7E-71 9.2E-76 504.7 14.0 199 99-298 1-218 (225)
2 3v2d_F 50S ribosomal protein L 100.0 1.8E-69 6.2E-74 488.3 17.6 194 97-298 5-200 (210)
3 3r8s_E 50S ribosomal protein L 100.0 1.7E-69 5.7E-74 485.7 15.3 185 112-298 10-194 (201)
4 3bbo_G Ribosomal protein L4; l 100.0 5.4E-70 1.9E-74 511.5 6.3 199 97-298 51-253 (293)
5 2zjr_C 50S ribosomal protein L 100.0 1.2E-68 4.2E-73 481.3 13.2 190 100-298 3-194 (205)
6 2ftc_D Mitochondrial ribosomal 100.0 5E-63 1.7E-67 435.4 15.0 168 131-298 1-171 (175)
7 3j21_D 50S ribosomal protein L 100.0 7.2E-59 2.5E-63 429.4 15.2 191 99-297 1-247 (255)
8 1vq8_C 50S ribosomal protein L 100.0 8.1E-57 2.8E-61 414.0 15.4 188 99-298 1-241 (246)
9 2zkr_c 60S ribosomal protein L 100.0 6.7E-57 2.3E-61 437.7 14.4 195 97-297 4-257 (421)
10 4a17_C RPL4, ribosomal protein 100.0 5.3E-56 1.8E-60 430.2 17.8 196 97-297 3-263 (410)
11 3iz5_D 60S ribosomal protein L 100.0 7E-55 2.4E-59 422.9 15.3 197 97-298 5-263 (405)
12 2wwb_H 60S ribosomal protein L 100.0 1.2E-53 4.3E-58 409.6 9.4 191 98-297 3-255 (362)
13 1vq8_C 50S ribosomal protein L 50.3 11 0.00039 34.2 3.6 52 134-192 31-84 (246)
14 2wwb_H 60S ribosomal protein L 43.7 10 0.00035 36.5 2.2 49 125-173 35-88 (362)
15 1ye8_A Protein THEP1, hypothet 31.7 2.1E+02 0.0073 23.4 9.2 67 215-284 97-168 (178)
16 4dzz_A Plasmid partitioning pr 27.4 2.1E+02 0.0071 22.8 7.5 75 220-295 3-84 (206)
17 3kta_B Chromosome segregation 27.2 1.1E+02 0.0036 25.6 5.7 60 194-253 61-124 (173)
18 3la6_A Tyrosine-protein kinase 27.0 2.3E+02 0.0077 25.2 8.3 53 202-254 74-129 (286)
19 1mv5_A LMRA, multidrug resista 26.4 1.1E+02 0.0039 26.3 6.0 48 203-253 146-195 (243)
20 2ghi_A Transport protein; mult 25.7 1E+02 0.0035 27.0 5.7 54 197-253 155-211 (260)
21 4aby_A DNA repair protein RECN 24.0 65 0.0022 29.5 4.1 50 203-253 302-353 (415)
22 3auy_A DNA double-strand break 23.8 1.5E+02 0.0053 27.1 6.6 56 198-253 281-343 (371)
23 3bfv_A CAPA1, CAPB2, membrane 22.0 2.8E+02 0.0094 24.3 7.8 50 205-254 67-119 (271)
24 2ff7_A Alpha-hemolysin translo 21.1 92 0.0031 27.2 4.3 48 203-253 152-201 (247)
25 2wvl_A Mannosyl-3-phosphoglyce 20.2 63 0.0022 31.4 3.2 65 207-275 69-135 (391)
No 1
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=100.00 E-value=2.7e-71 Score=504.71 Aligned_cols=199 Identities=39% Similarity=0.563 Sum_probs=139.9
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCCCccccCCCCccCCCCCCCC
Q 022312 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGP 178 (299)
Q Consensus 99 ~~v~V~n~~ge~~g~ieLp~~VF~~pir~dilh~vv~~q~anrRqGta~TKtRaEVsGsGrKp~rQKGTGrAR~Gs~rsP 178 (299)
|+++|||++|+++|+++||++||+.|+|.||||+||+||++|+|||||+||||+||||||||||||||||||||||+|+|
T Consensus 1 ~~~~v~~~~g~~~g~v~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktRaEv~G~GrKp~rQKGTGrAR~Gs~rsP 80 (225)
T 1dmg_A 1 AQVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSP 80 (225)
T ss_dssp CEEEEECTTSCEEEEEECCHHHHSSCCCHHHHHHHHHHHHC---------------------------------------
T ss_pred CeeEEEcCCCCEeeEEEcCHHHhCCCccHHHHHHHHHHHHHhccCCccccceeeEeecCCCCCCCCCCCCccccccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccCCCCccccccccHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHhccCC-CcEEEEecCCc
Q 022312 179 QFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENT-KKVLLCDGGCI 257 (299)
Q Consensus 179 ~~rGGG~afGPkPR~y~~klNKK~rrlAlksALSak~~~g~LiVVD~l~~~~~KTK~~~~~Lk~l~~~-k~~LiV~~~~~ 257 (299)
+|||||++|||+||+|+++||||+|++|+++|||+++.+++|+|||+++++.+|||+++++|++++++ +++|||++ +.
T Consensus 81 ~~rGGG~~fgPkpR~~~~klnkK~rrlAl~sALs~k~~~~~LvVvd~~~~~~~KTK~~~~~L~~l~~~~~~~LiV~~-~~ 159 (225)
T 1dmg_A 81 IWRHGGVVHGPKPRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLP-WK 159 (225)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEEC-CC
T ss_pred ceecCceecCCcCccccccCCHHHHHHHHHHHHHHHHhCCCEEEEeecccCCCCHHHHHHHHHHcCCCCCCEEEEEC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 78999984 55
Q ss_pred ch---hHHHHhhCCCCceEEecCC---------------CccccccccceEEEeeeccC
Q 022312 258 HE---KLKLATQNLHYVNVLPSVV---------------RSTTQSFLIYYYFLDFDFKK 298 (299)
Q Consensus 258 ~e---nl~~A~RNIp~V~v~~~~~---------------LNv~dLl~~~~ifI~~~a~~ 298 (299)
|+ |+.+|+||||+|+++++++ ||+||||+++.++|+++|.+
T Consensus 160 ~~~~~n~~~a~RNip~v~v~~~~~~~~~~~~~~~~~~~~lNv~dll~~~~lv~t~~Al~ 218 (225)
T 1dmg_A 160 EEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDMVS 218 (225)
T ss_dssp SHHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCCCTTCCHHHHHHSSEEEEEHHHHH
T ss_pred ccchHHHHHHHhCCCCCEEEecCCcccccccccccCcCcEEHHHHhCCCcEEEeHHHHH
Confidence 78 9999999999999999999 99999999999999998853
No 2
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=100.00 E-value=1.8e-69 Score=488.26 Aligned_cols=194 Identities=38% Similarity=0.526 Sum_probs=187.4
Q ss_pred cceeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCCCccccCCCCccCCCCCC
Q 022312 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176 (299)
Q Consensus 97 ~~~~v~V~n~~ge~~g~ieLp~~VF~~pir~dilh~vv~~q~anrRqGta~TKtRaEVsGsGrKp~rQKGTGrAR~Gs~r 176 (299)
.||+++|||++|+++|+++||+ |+|.||||+||+||++|+|||||+||||+||||||||||||||||||||||++
T Consensus 5 ~m~~v~V~~~~G~~~g~i~L~~-----~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~r 79 (210)
T 3v2d_F 5 AVYQIPVLSPSGRRELAADLPA-----EINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIG 79 (210)
T ss_dssp -CCCCCEECSSSCCCCCCCCCS-----CCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSSCCCCCSSCSSSSSSCCCCCTT
T ss_pred ccceeEEEcCCCCEeeeEecCC-----cccHHHHHHHHHHHHHhccCCccCCCccccccCCCCCCCCCCCCCccCCCccc
Confidence 5789999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccccCCCCccccccccHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHhccC--CCcEEEEec
Q 022312 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMEN--TKKVLLCDG 254 (299)
Q Consensus 177 sP~~rGGG~afGPkPR~y~~klNKK~rrlAlksALSak~~~g~LiVVD~l~~~~~KTK~~~~~Lk~l~~--~k~~LiV~~ 254 (299)
+|+|||||++|||+||+|+++||||+|++|+++|||+++.+++|+|||+++++.+|||+++++|++++. .+++|||++
T Consensus 80 sP~~~gGG~~fgP~pR~~~~klnkK~rrlAl~sALs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~lg~~~~~~~LiV~~ 159 (210)
T 3v2d_F 80 APIFVGGGVVFGPKPRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG 159 (210)
T ss_dssp STTSTTCCCSSCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCEEEESCCTTCSSCHHHHHHHHHHTTCCSSSCEEEECS
T ss_pred CCcccCCeeeCCCCCccceeeCCHHHHHHHHHHHHHHHHhcCCEEEecccccCCccHHHHHHHHHHcCCCCCCceEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 378999993
Q ss_pred CCcchhHHHHhhCCCCceEEecCCCccccccccceEEEeeeccC
Q 022312 255 GCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFDFKK 298 (299)
Q Consensus 255 ~~~~enl~~A~RNIp~V~v~~~~~LNv~dLl~~~~ifI~~~a~~ 298 (299)
|+|+.+|+||||+|+++++++||+|||+++++++++++|.+
T Consensus 160 ---~~~~~~a~RNip~v~v~~~~~lnv~dll~~~~vv~t~~Al~ 200 (210)
T 3v2d_F 160 ---NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWE 200 (210)
T ss_dssp ---CHHHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEEEHHHHH
T ss_pred ---ChhHHHHHhCcCCceEEeeCCccHHHHhCCCCEEEEHHHHH
Confidence 89999999999999999999999999999999999998853
No 3
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=100.00 E-value=1.7e-69 Score=485.67 Aligned_cols=185 Identities=35% Similarity=0.520 Sum_probs=179.8
Q ss_pred eeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCCCccccCCCCccCCCCCCCCcccCcccccCCCC
Q 022312 112 GFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKP 191 (299)
Q Consensus 112 g~ieLp~~VF~~pir~dilh~vv~~q~anrRqGta~TKtRaEVsGsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afGPkP 191 (299)
++|+||++||+.|+|+||||+||+||++|+|||||+||||+||||||||||||||||||||||+++|+|||||++|||+|
T Consensus 10 ~~i~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~fgP~p 89 (201)
T 3r8s_E 10 SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARP 89 (201)
T ss_dssp CCEECCHHHHSSCCCHHHHHHHHHHHHTTSCCCCCCCCBTTTSSCCCCCSSCSSSSSSCCCCCTTCTTSTTCCBTTCCCC
T ss_pred ceEECCHHHhCCCCCHHHHHHHHHHHHHhCcCCCCCCcceeeecCCCCCCCccCCCCccccCcCcCCceeCCEeecCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHhccCCCcEEEEecCCcchhHHHHhhCCCCc
Q 022312 192 RSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCIHEKLKLATQNLHYV 271 (299)
Q Consensus 192 R~y~~klNKK~rrlAlksALSak~~~g~LiVVD~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~~enl~~A~RNIp~V 271 (299)
|+|+++||||+|++|+++|||+++++++|+|||+++++.+|||+++++|+++++ +++|||+ ++.|+|+.+|+||||+|
T Consensus 90 R~~~~klnkK~rrlAl~sALs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~-~~~LiV~-~~~~~~~~~a~RNip~v 167 (201)
T 3r8s_E 90 QDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMAL-EDVLIIT-GELDENLFLAARNLHKV 167 (201)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHHTCEEECSCCCCSSSCHHHHHHHHHHHTC-SSEEEEE-SSCCHHHHHTTSSCSSE
T ss_pred ccceeccCHHHHHHHHHHHHHHHhhcCCEEEeccccccCcCHHHHHHHHHHcCC-CceEEEE-CCCchHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999999997 7899999 47899999999999999
Q ss_pred eEEecCCCccccccccceEEEeeeccC
Q 022312 272 NVLPSVVRSTTQSFLIYYYFLDFDFKK 298 (299)
Q Consensus 272 ~v~~~~~LNv~dLl~~~~ifI~~~a~~ 298 (299)
+++++++||+|||+++++++++++|.+
T Consensus 168 ~v~~~~~lnv~dll~~~~~v~t~~Al~ 194 (201)
T 3r8s_E 168 DVRDATGIDPVSLIAFDKVVMTADAVK 194 (201)
T ss_dssp EEEEGGGCCHHHHHHSSEEEECHHHHH
T ss_pred eEEeeCCCcHHHHhCCCCEEEEHHHHH
Confidence 999999999999999999999998853
No 4
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=5.4e-70 Score=511.51 Aligned_cols=199 Identities=29% Similarity=0.387 Sum_probs=190.5
Q ss_pred cceeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCCCccccCCCCccCCCCCC
Q 022312 97 QDLVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLR 176 (299)
Q Consensus 97 ~~~~v~V~n~~ge~~g~ieLp~~VF~~pir~dilh~vv~~q~anrRqGta~TKtRaEVsGsGrKp~rQKGTGrAR~Gs~r 176 (299)
+|++++|||++|+++|+++||++||+.|+|.||||+||+||++|+|||||+||||+||||+||||||||||||||+|++|
T Consensus 51 ~M~~v~V~~~~G~~~g~veLp~~VF~~~~r~dlih~vV~~q~an~RQGTa~tKtRaEV~GgGRKp~RQKGTGRAR~Gs~r 130 (293)
T 3bbo_G 51 ELIPLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQG 130 (293)
T ss_dssp CCEEEECCCSSSCCCSEEEECSSSSSSCCCTTTTTTHHHHHHHHHCCCCCCCCSSTTCSSSCCCCCCCSSSCSCSCCSSS
T ss_pred cCceeEEEcCCCCEeeeEEcCHHHhCCCccHHHHHHHHHHHHHhcccccccCceeeeeccCCCceeccCCCCccccCccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccccCCCCccccccccHHHHHHHHHHHHHHHHHcCCeEEEecC--CCCCCCHHHHHHHHHhccCC--CcEEEE
Q 022312 177 GPQFRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDL--EVPSHKTKFIVNYYNQMENT--KKVLLC 252 (299)
Q Consensus 177 sP~~rGGG~afGPkPR~y~~klNKK~rrlAlksALSak~~~g~LiVVD~l--~~~~~KTK~~~~~Lk~l~~~--k~~LiV 252 (299)
+|+|||||++|||+||+|+++||||+|++|+++|||+|+ |+|+|||++ +++.+|||+++++|++++++ +++|||
T Consensus 131 sP~~rGGGvafGPkPRdy~~klNKK~rrlAlrsALSak~--g~LvVvd~~~~~~~~~KTK~~~~~Lk~lg~~~~~k~LlV 208 (293)
T 3bbo_G 131 SPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAV--GNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFF 208 (293)
T ss_dssp CSSSSSSCCSSCCCSCCCCCCCCSHHHHHHHHHHHHHHH--HTTCCCCCCGGGTTCCSSHHHHTTHHHHSCSSCSSSCCE
T ss_pred CCceecCceecCCcCcchhhhcCHHHHHHHHHHHHHHHc--CCEEEEecccccccCCCHHHHHHHHHHcCCcccCceEEE
Confidence 999999999999999999999999999999999999999 889999999 89999999999999999974 568888
Q ss_pred ecCCcchhHHHHhhCCCCceEEecCCCccccccccceEEEeeeccC
Q 022312 253 DGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFDFKK 298 (299)
Q Consensus 253 ~~~~~~enl~~A~RNIp~V~v~~~~~LNv~dLl~~~~ifI~~~a~~ 298 (299)
++ +.|+|+.+|+||||+|+++++++|||||||++++++|+++|.+
T Consensus 209 ~~-~~d~nl~~A~RNIp~V~v~~v~~LNvydLl~~~~lViT~~Al~ 253 (293)
T 3bbo_G 209 LM-DLVENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQ 253 (293)
T ss_dssp EC-CCSSSCCTTTSSSSSCEECCSSCCCHHHHHHSSCEECCTTHHH
T ss_pred Ec-CCChhHHHHHhCCCCcEEEeeCceeHHHhhCCCcEEEEHHHHH
Confidence 73 5688999999999999999999999999999999999998853
No 5
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=100.00 E-value=1.2e-68 Score=481.26 Aligned_cols=190 Identities=35% Similarity=0.515 Sum_probs=184.8
Q ss_pred eeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCCCccccCCCCccCCCCCCCCc
Q 022312 100 VIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQ 179 (299)
Q Consensus 100 ~v~V~n~~ge~~g~ieLp~~VF~~pir~dilh~vv~~q~anrRqGta~TKtRaEVsGsGrKp~rQKGTGrAR~Gs~rsP~ 179 (299)
+++|||++|+++|+++||+ +|+||||+||+||++|+|||||+||||+|||||||||||||||||||+||+|+|+
T Consensus 3 ~v~v~~~~g~~~g~i~L~~------~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~GrKp~rQKGTGrAR~Gs~rsP~ 76 (205)
T 2zjr_C 3 QINVIGQNGGRTIELPLPE------VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPT 76 (205)
T ss_dssp CCCCSSCCCCCCCCCCTTT------CCHHHHHHHHHHHHHHHCCCCCCCCCCTTTSCCCSCCSCSSSSSSCCCSCSCSTT
T ss_pred eeEEEcCCCCEeeeEECCC------chHHHHHHHHHHHHHhccccccccceeeeccCCCCCCCCcCCCCCcccCcccCCc
Confidence 6999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCccccccccHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHhccCC--CcEEEEecCCc
Q 022312 180 FRGGTTMHGPKPRSHAIKLNKKVRRLGLKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENT--KKVLLCDGGCI 257 (299)
Q Consensus 180 ~rGGG~afGPkPR~y~~klNKK~rrlAlksALSak~~~g~LiVVD~l~~~~~KTK~~~~~Lk~l~~~--k~~LiV~~~~~ 257 (299)
|||||++|||+||+|+++||||+|++|+++|||+++.+++|+|||+++++.+|||+++++|++++++ +++|||+ .
T Consensus 77 ~~gGG~~fgP~pR~~~~klnkK~rrlAl~sALs~k~~~~~lvVvd~~~~~~~KTK~~~~~L~~l~~~~~~~~LiV~---~ 153 (205)
T 2zjr_C 77 FVGGGVAFGPKPRSYDYTLPRQVRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVT---D 153 (205)
T ss_dssp STTSCCTTCCCCCCCCCCCCHHHHHHHHHHHHHHHHHTTCCBCSCCTTSCSSCSHHHHHHHHHTTCCSSSCEEEEC---C
T ss_pred ccCCeeecCCCCcchhhhcCHHHHHHHHHHHHHHHhhcCCEEEEeccccCCCCHHHHHHHHHHcCCCcCCCEEEEE---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 7899998 4
Q ss_pred chhHHHHhhCCCCceEEecCCCccccccccceEEEeeeccC
Q 022312 258 HEKLKLATQNLHYVNVLPSVVRSTTQSFLIYYYFLDFDFKK 298 (299)
Q Consensus 258 ~enl~~A~RNIp~V~v~~~~~LNv~dLl~~~~ifI~~~a~~ 298 (299)
|+|+.+|+||||+|+++++++||+||||++++++++++|.+
T Consensus 154 ~~~~~~a~RNip~v~v~~~~~lnv~dll~~~~~v~t~~Al~ 194 (205)
T 2zjr_C 154 DENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALE 194 (205)
T ss_dssp CHHHHTSCCCSSSEEEEGGGCCCHHHHHHSSEEECBCTTTS
T ss_pred CccHHHHHhCCCCceEEeeCceeHHHHhCCCcEEEEHHHHH
Confidence 89999999999999999999999999999999999999865
No 6
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=100.00 E-value=5e-63 Score=435.40 Aligned_cols=168 Identities=36% Similarity=0.558 Sum_probs=161.4
Q ss_pred HHHHHHHHHHcccCCCCCceeeeecCCCCCccccCCCCccCCCCCCCCcccCcccccCCC-CccccccccHHHHHHHHHH
Q 022312 131 HRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPK-PRSHAIKLNKKVRRLGLKI 209 (299)
Q Consensus 131 h~vv~~q~anrRqGta~TKtRaEVsGsGrKp~rQKGTGrAR~Gs~rsP~~rGGG~afGPk-PR~y~~klNKK~rrlAlks 209 (299)
|++|+||++++|||||+||||+|||||||||||||||||||+||+|+|+|||||++|||+ ||+|+++||||+|++|+++
T Consensus 1 h~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~fgP~~pR~~~~klnkK~rrlAl~s 80 (175)
T 2ftc_D 1 HQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKV 80 (175)
T ss_pred CHHHHHHHHHhhcCCCCCcceeeecCCCCCCCCcCCCCccccCCCcCCcccCCEeecCCCCccchhhhcCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHhccCCCcEEEEecCCc--chhHHHHhhCCCCceEEecCCCcccccccc
Q 022312 210 ALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQMENTKKVLLCDGGCI--HEKLKLATQNLHYVNVLPSVVRSTTQSFLI 287 (299)
Q Consensus 210 ALSak~~~g~LiVVD~l~~~~~KTK~~~~~Lk~l~~~k~~LiV~~~~~--~enl~~A~RNIp~V~v~~~~~LNv~dLl~~ 287 (299)
|||+++.+++|+|||+++++.+|||+++++|+++++++++|||+++.. |+|+.+|+||||+|+++++++|||||||++
T Consensus 81 ALs~k~~~~~lvVvd~~~~~~~KTK~~~~~l~~l~~~~~~LiV~~~~~~~~~~~~~a~RNip~v~v~~~~~lnv~dll~~ 160 (175)
T 2ftc_D 81 ALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKH 160 (175)
T ss_pred HHHHhccCCCEEEEecccCCCCCHHHHHHHHHHCCCCCceEEEECCCccCCHHHHHHHhCCCCcEEEeeCCEeHHHHhCC
Confidence 999999999999999999999999999999999998788999985313 899999999999999999999999999999
Q ss_pred ceEEEeeeccC
Q 022312 288 YYYFLDFDFKK 298 (299)
Q Consensus 288 ~~ifI~~~a~~ 298 (299)
+.++|+++|.+
T Consensus 161 ~~lv~t~~Al~ 171 (175)
T 2ftc_D 161 QTLVLTLPTVA 171 (175)
T ss_pred CCEEEEHHHHH
Confidence 99999998853
No 7
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=7.2e-59 Score=429.43 Aligned_cols=191 Identities=26% Similarity=0.263 Sum_probs=179.7
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHccc--CCCC---CceeeeecCCCCC---ccccCCC-Cc
Q 022312 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQ--GTHS---TKTISEVSGTGKK---PWRQKGT-GR 169 (299)
Q Consensus 99 ~~v~V~n~~ge~~g~ieLp~~VF~~pir~dilh~vv~~q~anrRq--Gta~---TKtRaEVsGsGrK---p~rQKGT-Gr 169 (299)
|+++|||++|+++|+++|| +||+.|+|+||||+||+||++|+|| |||+ ||||+||||+||| ||||||| ||
T Consensus 1 m~v~V~~~~G~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rq~~Gt~~~ag~ktraev~G~Gr~~ar~~RqKGtgGr 79 (255)
T 3j21_D 1 MKVKVFDLNGQPVGEIELP-KVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRY 79 (255)
T ss_dssp CEEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCSSTTSSSCCBCCCSSSSSCCCCBCSSSCCC
T ss_pred CeeEEEcCCCCEeeEEEhH-HhhCCCCcHHHHHHHHHHHHHhccccccCCcccCcccceeecCCCCCcCcCCccCCCCCc
Confidence 7899999999999999999 8999999999999999999999999 8888 8999999999996 9999999 99
Q ss_pred cCCCCCCCCcccCcccccCCCC-ccccccccHHHHHHHHHHHHHHHHHcC---------------CeEEEecCCCCCCCH
Q 022312 170 ARHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAAEG---------------KLLVFEDLEVPSHKT 233 (299)
Q Consensus 170 AR~Gs~rsP~~rGGG~afGPkP-R~y~~klNKK~rrlAlksALSak~~~g---------------~LiVVD~l~~~~~KT 233 (299)
|| ++|+|||||++|||+| |+|+++||||+|++|+++|||+++.++ +|+|+|+++ +.+||
T Consensus 80 Ar----rsP~~rGGg~~~gPkp~R~~~~klNkK~rrlAl~sALsa~~~~~lv~~rgh~~~~~~~~~lvVvd~~~-~~~KT 154 (255)
T 3j21_D 80 AA----FVPFARGGRRTHPPKVEKIIWEDINKKEKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQ-KVQKT 154 (255)
T ss_dssp CS----SCSSSTTCCCSSCCCTTSCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCSCTTCSSEEECGGGG-TCCCH
T ss_pred cc----cCccccCCeeecCCCCCcccceecCHHHHHHHHHHHHHHHhhcccchhcccccccccceeEEEEeCCc-CCCCh
Confidence 98 9999999999999999 899999999999999999999999977 799999997 57899
Q ss_pred HHHHHHHHhccCC---------------------------CcEEEEecCCcchhHHHHhhCCCCceEEecCCCccccccc
Q 022312 234 KFIVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFL 286 (299)
Q Consensus 234 K~~~~~Lk~l~~~---------------------------k~~LiV~~~~~~enl~~A~RNIp~V~v~~~~~LNv~dLl~ 286 (299)
|+++++|++++.+ +++|||++ +.|+ +.+|+||||+|+++++++||+|||++
T Consensus 155 K~~~~~L~~lg~~~dv~r~~~~~~~ragkgk~r~rr~~~~~~~LiV~~-~~~~-~~~a~RNip~V~v~~~~~LNv~~Ll~ 232 (255)
T 3j21_D 155 RETREIFKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVVG-KNEG-IVLGARNHPGVDVVVVDNLGVEHLAP 232 (255)
T ss_dssp HHHHHHHHHHTCTHHHHHHTSCCCSCSSGGGGGSCCSCCCCCCEEEES-SSSS-SCSSSSSSTTCEEEETTTCCHHHHST
T ss_pred HHHHHHHHHcCChhhhHHhhccceecccccccccccccCCCceEEEEC-CCcH-HHHHHhCCCCcEEEecCCccHHHHhC
Confidence 9999999999874 68999994 4455 99999999999999999999999999
Q ss_pred cc----eEEEeeecc
Q 022312 287 IY----YYFLDFDFK 297 (299)
Q Consensus 287 ~~----~ifI~~~a~ 297 (299)
++ .+++|++|.
T Consensus 233 ~~~~gr~~V~T~~A~ 247 (255)
T 3j21_D 233 GTHPGRLTVWTVSAI 247 (255)
T ss_dssp TSCCCCCEEEEHHHH
T ss_pred CCCCCceEEEEHHHH
Confidence 99 599998875
No 8
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=100.00 E-value=8.1e-57 Score=414.00 Aligned_cols=188 Identities=28% Similarity=0.339 Sum_probs=177.8
Q ss_pred eeeEEEccCCCeeeeEEcCccccCCCCchhHHHHHHHHHHHHcccCCCC-----CceeeeecCCCCCc---cccCCCCcc
Q 022312 99 LVIPVTNFFNEDKGFMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHS-----TKTISEVSGTGKKP---WRQKGTGRA 170 (299)
Q Consensus 99 ~~v~V~n~~ge~~g~ieLp~~VF~~pir~dilh~vv~~q~anrRqGta~-----TKtRaEVsGsGrKp---~rQKGTGrA 170 (299)
|+++|||++|+++|+++|| +||+.|+|+||||+||+||++|+|||||. +||++|+||+|||| |||| |+|
T Consensus 1 m~v~v~~~~g~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rqgt~~~~~aG~kt~ae~~GtGR~~ari~rqK--G~a 77 (246)
T 1vq8_C 1 MQATIYDLDGNTDGEVDLP-DVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLD--GRA 77 (246)
T ss_dssp CEEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEET--TEE
T ss_pred CeeEEEcCCCCCccEEEhh-HhhCCCccHHHHHHHHHHHHHhcccCcccccccCcccceeeccCCCCcccccccc--Ccc
Confidence 6799999999999999999 99999999999999999999999999999 99999999999999 9999 777
Q ss_pred CCCCCCCCcccCcccccCCCC-ccccccccHHHHHHHHHHHHHHHHH--------------cCCeEEEecCCCCCCCHHH
Q 022312 171 RHGTLRGPQFRGGTTMHGPKP-RSHAIKLNKKVRRLGLKIALSARAA--------------EGKLLVFEDLEVPSHKTKF 235 (299)
Q Consensus 171 R~Gs~rsP~~rGGG~afGPkP-R~y~~klNKK~rrlAlksALSak~~--------------~g~LiVVD~l~~~~~KTK~ 235 (299)
| ++|+|||||++|||+| |+|+++||||+|++|+++|||+++. +++|+|+|+++ +.+|||+
T Consensus 78 r----rsP~~rGGg~~~gPkp~R~~~~klnkK~rrlAl~sALsa~~~~~lv~~rGh~~~~~e~~lvVvd~~~-~~~KTK~ 152 (246)
T 1vq8_C 78 R----RVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFE-DLVKTQE 152 (246)
T ss_dssp C----SSTTSTTCCCSSCCCTTCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCSSCSEEECGGGG-GCCCHHH
T ss_pred c----cCCccCCCeeecCCCCCccchhhcCHHHHHHHHHHHHHHhhhhhhhhhcccccccccccEEEEeCcc-cCCCHHH
Confidence 6 8999999999999998 9999999999999999999999997 68999999999 8999999
Q ss_pred HHHHHHhccCC--------------------------CcEEEEecCCcchhHHHHhhCCCCceEEecCCCccccccccce
Q 022312 236 IVNYYNQMENT--------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQSFLIYY 289 (299)
Q Consensus 236 ~~~~Lk~l~~~--------------------------k~~LiV~~~~~~enl~~A~RNIp~V~v~~~~~LNv~dLl~~~~ 289 (299)
++++|++++++ +++|||++ + + +.+|+||||+|+++++++||+|||+++++
T Consensus 153 ~~~~L~~lg~~~dv~r~~~~~iragkgk~r~rr~~~~~~~LiV~~-~-~--~~~a~RNip~V~v~~~~~lnv~dll~~~~ 228 (246)
T 1vq8_C 153 VVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTS-D-E--PSTAARNLAGADVATASEVNTEDLAPGGA 228 (246)
T ss_dssp HHHHHHHTTCTHHHHHSSCCEECSSGGGGGTCCEECCCCCEEEES-S-S--CCTTTTTSTTCEEEETTTCCHHHHSGGGC
T ss_pred HHHHHHhcCCcchhhhhhhhhcccccccccccccccCCcEEEEEC-c-H--HHHHHcCCCCcEEEeeCCeeHHHHhccCC
Confidence 99999999875 47999984 2 3 99999999999999999999999999988
Q ss_pred ----EEEeeeccC
Q 022312 290 ----YFLDFDFKK 298 (299)
Q Consensus 290 ----ifI~~~a~~ 298 (299)
+++|++|.+
T Consensus 229 ~gr~~v~T~~Al~ 241 (246)
T 1vq8_C 229 PGRLTVFTESALA 241 (246)
T ss_dssp CCCCEEEEHHHHH
T ss_pred CCCeEEEEHHHHH
Confidence 999988753
No 9
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.7e-57 Score=437.67 Aligned_cols=195 Identities=22% Similarity=0.193 Sum_probs=182.8
Q ss_pred cceeeEEEccCCCeee-eEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCC-----ceeeeecCCCCCccc-----cC
Q 022312 97 QDLVIPVTNFFNEDKG-FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHST-----KTISEVSGTGKKPWR-----QK 165 (299)
Q Consensus 97 ~~~~v~V~n~~ge~~g-~ieLp~~VF~~pir~dilh~vv~~q~anrRqGta~T-----KtRaEVsGsGrKp~r-----QK 165 (299)
+-|+++|||++|+.+| +|+|| +||+.|+|.||||+||+||++|+|||||+| |||+||||||||||| ||
T Consensus 4 ~rm~v~V~~~~G~~~g~~ieLp-~VF~~piR~dlIh~vV~~~~an~RQgta~t~~AG~KTraEv~G~GRKp~RiPRv~QK 82 (421)
T 2zkr_c 4 ARPLISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGG 82 (421)
T ss_dssp ---CCEEECTTSSEEEECSSCC-GGGGSCCCHHHHHHHHHHHHHTTCCCCCCCSCTTTCSCCCCCCSSSSSCCSCCBTTT
T ss_pred cCceeEEEcCCCCccccEEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCcCcccCCcceeEecCCCCCcCCcccccCC
Confidence 3588999999999987 89999 999999999999999999999999999999 999999999999999 99
Q ss_pred CCCccCCCCCCCCcccCcccccCCC-C-ccccccccHHHHHHHHHHHHHHH---------------HHcCCeEEEecCCC
Q 022312 166 GTGRARHGTLRGPQFRGGTTMHGPK-P-RSHAIKLNKKVRRLGLKIALSAR---------------AAEGKLLVFEDLEV 228 (299)
Q Consensus 166 GTGrAR~Gs~rsP~~rGGG~afGPk-P-R~y~~klNKK~rrlAlksALSak---------------~~~g~LiVVD~l~~ 228 (299)
||||||||++++ +|| ||++|||+ | |+|+++||+|+|++|+++|||++ +.++.|+|+|+++
T Consensus 83 GTGRARqGs~rs-~~R-GGr~fgP~kp~R~~~~KlNkK~rrlAlrSALSaka~~~LV~aRGH~i~~~~e~~LVVvD~le- 159 (421)
T 2zkr_c 83 GTHRSGQGAFGN-MCR-GGRMFAPTKTWRRWHRRVNTTQKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVE- 159 (421)
T ss_dssp TBCCCSTTCCTT-STT-CCCCSSCCCSSSCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCCSCSCCSEEECGGGG-
T ss_pred CCCccCcccccc-ccc-cceeeCCCCCCcchhhhcCHHHHHHHHHHHHHhcccchhhhhccccccccccCCEEEEeCCc-
Confidence 999999999999 999 99999999 8 99999999999999999999999 6789999999998
Q ss_pred CCCCHHHHHHHHHhccCCC---------------------------cEEEEecCCcchhHHHHhhCCCCceEEecCCCcc
Q 022312 229 PSHKTKFIVNYYNQMENTK---------------------------KVLLCDGGCIHEKLKLATQNLHYVNVLPSVVRST 281 (299)
Q Consensus 229 ~~~KTK~~~~~Lk~l~~~k---------------------------~~LiV~~~~~~enl~~A~RNIp~V~v~~~~~LNv 281 (299)
+.+|||+++++|++++++. ++|||++ + |+++.+|+||||+|+++++++|||
T Consensus 160 ~~~KTK~~v~~Lk~lgl~~d~~r~~~sk~iRaGkGKmRgRry~~~kg~LiV~~-~-d~~l~~A~RNIpgV~v~~v~~LNv 237 (421)
T 2zkr_c 160 GYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYN-E-DNGIIKAFRKHPGITLLNVSKLNI 237 (421)
T ss_dssp GCCCHHHHHHHHHHTTCTHHHHHTTSSCEECSSSTTTTTCCEECCCCCEEEES-S-SSCCCHHHHTSTTCEEEEGGGCCH
T ss_pred cccChHHHHHHHHhcCCCcchhhhhhheecccccccccccccccCcceEEEEC-C-ChhHHHHHhCCCCcEEEeeCCccH
Confidence 8999999999999998642 3899984 4 889999999999999999999999
Q ss_pred ccccccc----eEEEeeecc
Q 022312 282 TQSFLIY----YYFLDFDFK 297 (299)
Q Consensus 282 ~dLl~~~----~ifI~~~a~ 297 (299)
|||+.++ .+|++.+|.
T Consensus 238 ~dLl~~~h~GR~vV~T~sAl 257 (421)
T 2zkr_c 238 LKLAPGGHVGRFCIWTESAF 257 (421)
T ss_dssp HHHSGGGCCCCCEEEEHHHH
T ss_pred HHHhcCCCCCcEEEEEhHHH
Confidence 9999999 899998874
No 10
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=100.00 E-value=5.3e-56 Score=430.22 Aligned_cols=196 Identities=25% Similarity=0.233 Sum_probs=181.0
Q ss_pred cceeeEEE-ccCCCee-ee-EEcCccccCCCCchhHHHHHHHHHHHHccc---------CCCCCceeeeecCCCCCccc-
Q 022312 97 QDLVIPVT-NFFNEDK-GF-MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQ---------GTHSTKTISEVSGTGKKPWR- 163 (299)
Q Consensus 97 ~~~~v~V~-n~~ge~~-g~-ieLp~~VF~~pir~dilh~vv~~q~anrRq---------Gta~TKtRaEVsGsGrKp~r- 163 (299)
+|++++|| |++|+.+ |+ |+|| +||+.|+|+||||+||+||++|+|| |||.||||+||||+||||||
T Consensus 3 ~~p~v~V~~~~~G~~~~g~~veLp-~VF~~~ir~dlIh~vV~~~~anrRQ~~~~~~~~rGTa~tktraEv~GtGRk~~Ri 81 (410)
T 4a17_C 3 SRPQIHVHDAKEANKQTATKLTLP-AVFTAPIRTDIVHKVFTDLNKNRKQASGVKISTRGTAGMGHSAESWGTGRAVARI 81 (410)
T ss_dssp CCCEEEEEESSSTTEEEEEEEECC-GGGGSCCCHHHHHHHHHHHHHTTCCCCCCCBCSSCBTTCCSCEEECCGGGSSCSS
T ss_pred CCCeeEEEECCCCCccCCceEehh-HhhCCCCcHHHHHHHHHHHHHhCcCcccCCCcccccccCCccceeCCCCCCcccc
Confidence 57899999 8999995 78 9996 7999999999999999999999999 88999999999999999999
Q ss_pred ----cCCCCccCCCCCCCCcccCcccccCCCC--ccccccccHHHHHHHHHHHHHHHHH---------------cCCeEE
Q 022312 164 ----QKGTGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA---------------EGKLLV 222 (299)
Q Consensus 164 ----QKGTGrAR~Gs~rsP~~rGGG~afGPkP--R~y~~klNKK~rrlAlksALSak~~---------------~g~LiV 222 (299)
||||||||||+++ |+|+ ||++|||+| |+|+++||||+|++|+++|||+++. ++.|+|
T Consensus 82 PR~~QKGTGRARqGs~r-P~~r-GGr~fgP~p~~R~y~~KlNKK~rrlAlrSALSaka~~~lV~aRgh~i~~v~e~~LVV 159 (410)
T 4a17_C 82 PRVGGSGTHRSGQAAFG-NQCR-KGRMFAPLKTYRRVHRRVNVNQKRHAVAAALAASALVPLVFARGHRISNVQELPYVF 159 (410)
T ss_dssp EEECCSSSTTTTCBCSS-TTSS-SCCCSSCCCSCCCCCCCCCHHHHHHHHHHHHHHHTCHHHHHHTTCCCTTCCSSSEEE
T ss_pred ccccCCCCCcccccccC-CccC-CeEEcCCCCCccchhhhhCHHHHHHHHHHHHHHhcchhhhhhccccccccCcCCEEE
Confidence 9999999999999 9888 899999997 9999999999999999999999974 667888
Q ss_pred EecCCCCCCCHHHHHHHHHhccCC---------------------------CcEEEEecCCcchhHHHHhhCCCCceEEe
Q 022312 223 FEDLEVPSHKTKFIVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLP 275 (299)
Q Consensus 223 VD~l~~~~~KTK~~~~~Lk~l~~~---------------------------k~~LiV~~~~~~enl~~A~RNIp~V~v~~ 275 (299)
+|+++ ..+|||+++++|++++.+ +++|||+ ++.|+++.+|+||||+|++++
T Consensus 160 ~D~~e-~~~KTK~~v~~Lk~lg~~~dv~r~~~~k~iRaGkGKmRgRry~~~k~~LIV~-~~~d~~l~~A~RNIpgV~v~~ 237 (410)
T 4a17_C 160 DDSVE-SYEKTKQAVAFLKRVGAYDDVLRVAETKALRAGQGKLRNRRYKLRRGPLVVY-GNEKSTLTRALRNIPGVDVCN 237 (410)
T ss_dssp CTTGG-GCCSHHHHHHHHHHHTTHHHHHHHHHCEEECCGGGGGGTCCEEECCCCEEEE-CCTTCSHHHHHTTSTTCEEEE
T ss_pred EecCc-CCCCHHHHHHHHHHcCCcchhhhhhcccceeccccccccccccCCCceEEEE-CCCchHHHHHHhCCCCcEEEE
Confidence 88887 568999999999999864 3799999 467899999999999999999
Q ss_pred cCCCccccccccc----eEEEeeecc
Q 022312 276 SVVRSTTQSFLIY----YYFLDFDFK 297 (299)
Q Consensus 276 ~~~LNv~dLl~~~----~ifI~~~a~ 297 (299)
+++||+|||+.++ .++++++|.
T Consensus 238 v~~LNv~dLl~~~~~gR~vV~TksAl 263 (410)
T 4a17_C 238 VNRLNLLQLAPGGHVGRFIIWTESAF 263 (410)
T ss_dssp TTSCCHHHHSGGGCCCCCEEECHHHH
T ss_pred eCCccHHHHhCCCCCCceEEEEHHHH
Confidence 9999999999999 568887764
No 11
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=100.00 E-value=7e-55 Score=422.91 Aligned_cols=197 Identities=24% Similarity=0.249 Sum_probs=177.2
Q ss_pred cceeeEEEccCCCeee----eEEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCc-----eeeeecCCCCCcc---cc
Q 022312 97 QDLVIPVTNFFNEDKG----FMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTK-----TISEVSGTGKKPW---RQ 164 (299)
Q Consensus 97 ~~~~v~V~n~~ge~~g----~ieLp~~VF~~pir~dilh~vv~~q~anrRqGta~TK-----tRaEVsGsGrKp~---rQ 164 (299)
+-.+++|||++|+.+| +++|| +||+.|+|+||||+||+||++|+|||||.|| ||+||||+||||| ||
T Consensus 5 ~rp~v~V~~~~G~~~g~~~~~v~Lp-~VF~~~~r~dlIh~vV~~~~an~RQgt~~tk~AG~~traEv~GtGRk~~RipRQ 83 (405)
T 3iz5_D 5 TRPLVSVKALEGDMATDNSSSLALA-EVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRV 83 (405)
T ss_dssp CCCEECCBCCSCCCCSSCCCCEECC-GGGGSCCCHHHHHHHHHHHHHTCSCCCCSCTTTTTCSCCCCCCSSSSSCSSCCC
T ss_pred cCceEEEEeCCCCcccccceeeccH-HHhCCCCCHHHHHHHHHHHHHhhhcCcCCCccccCCccceecCCCCCccccccc
Confidence 3468999999999999 79996 9999999999999999999999999999999 9999999999999 99
Q ss_pred C--CCCccCCCCCCCCcccCcccccCCCC--ccccccccHHHHHHHHHHHHHHHHH---------------cCCeEEEec
Q 022312 165 K--GTGRARHGTLRGPQFRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSARAA---------------EGKLLVFED 225 (299)
Q Consensus 165 K--GTGrAR~Gs~rsP~~rGGG~afGPkP--R~y~~klNKK~rrlAlksALSak~~---------------~g~LiVVD~ 225 (299)
| ||||||+|++ |+|+|||++|||+| |+|+++||||+|++|+++|||+++. ++.|+|+|+
T Consensus 84 KG~GTgRAr~gs~--~~~~gGGr~fgP~p~~R~y~~klNKK~rrlAlrSALSaka~~~lV~aRghri~~v~e~~LVV~D~ 161 (405)
T 3iz5_D 84 PGGGTHRAGQGAF--GNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDS 161 (405)
T ss_dssp CCCSSSCCCSCCS--SSSSTTCCCSSSCCSCCCCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHTCCCCCCSSSSEEECTT
T ss_pred cCCCCCccCCCCC--CCccCCeEEcCCCCCCccceeecCHHHHHHHHHHHHHHhcchhhhhhccccccccccCCEEEEec
Confidence 9 5555555554 89999999999998 9999999999999999999999965 456666666
Q ss_pred CCCCCCCHHHHHHHHHhccCC---------------------------CcEEEEecCCcchhHHHHhhCCCCceEEecCC
Q 022312 226 LEVPSHKTKFIVNYYNQMENT---------------------------KKVLLCDGGCIHEKLKLATQNLHYVNVLPSVV 278 (299)
Q Consensus 226 l~~~~~KTK~~~~~Lk~l~~~---------------------------k~~LiV~~~~~~enl~~A~RNIp~V~v~~~~~ 278 (299)
++ +.+|||+++++|++++.+ +++|||++ +.|+++.+|+||||+|+++++++
T Consensus 162 ~~-~~~KTK~~v~~Lk~lg~~~d~~k~~~~~~iRaGkGKmRgRry~~~k~~LIV~~-~~d~~l~~A~RNIpgV~v~~v~~ 239 (405)
T 3iz5_D 162 AE-SIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYG-TEGSKIVKAFRNLPGVDVANVER 239 (405)
T ss_dssp SS-SCCCHHHHHHHHHHHTCHHHHHTTSSCCEECCSGGGGTTCSEECCCCCEEEEC-CTTTCCCHHHHTSTTCEEEEGGG
T ss_pred Cc-ccCChHHHHHHHHHcCCccccchhhccccccccccccccccccccCceEEEEC-CCchHHHHHHhCCCCcEEEecCC
Confidence 65 789999999999999864 36999994 67899999999999999999999
Q ss_pred Cccccccccce----EEEeeeccC
Q 022312 279 RSTTQSFLIYY----YFLDFDFKK 298 (299)
Q Consensus 279 LNv~dLl~~~~----ifI~~~a~~ 298 (299)
||+|||+.+++ ++++++|.+
T Consensus 240 LNv~dLl~~~~~gr~vV~T~sAl~ 263 (405)
T 3iz5_D 240 LNLLDLAPGGHLGRFVIWTESAFK 263 (405)
T ss_dssp CCHHHHSGGGCCCCCEEEEHHHHT
T ss_pred ccHHHHhcCCCCCceEEEEHHHHH
Confidence 99999999998 899988754
No 12
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=100.00 E-value=1.2e-53 Score=409.61 Aligned_cols=191 Identities=25% Similarity=0.254 Sum_probs=181.0
Q ss_pred ceeeEEEccCCCeeee-EEcCccccCCCCchhHHHHHHHHHHHHcccCCCCCceeeeecCCCCCccccCCCCccCC----
Q 022312 98 DLVIPVTNFFNEDKGF-MVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRARH---- 172 (299)
Q Consensus 98 ~~~v~V~n~~ge~~g~-ieLp~~VF~~pir~dilh~vv~~q~anrRqGta~TKtRaEVsGsGrKp~rQKGTGrAR~---- 172 (299)
.++++|||++|+.+|+ |+|| +||+.|+|+||||+||+||++|+||||++||+|+|| +|+||| ||||||+
T Consensus 3 r~~v~V~~~~G~~~g~~i~Lp-~VF~~p~r~dlih~vv~~~~an~RQgt~~tk~rgev--tg~K~w---GTGRAraripR 76 (362)
T 2wwb_H 3 RPQVTVHSLTGEATANALPLP-AVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQ--TSAESW---GTGRAVARIPR 76 (362)
T ss_dssp SSCCCCCCSSCSCCSCCCCCC-GGGCSCCCHHHHHHHHHHHHHHHCCCCCCCSSSSCS--SCCSSC---CCCSSSCSCSC
T ss_pred CCeeEEEcCCCcCcCceEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCCCCccccc--ccceec---CCCCCeeeccc
Confidence 4679999999999999 9999 999999999999999999999999999999999999 899999 9999999
Q ss_pred ----CCCCCCc-----ccCcccccCCCC--ccccccccHHHHHHHHHHHHHHH---------------HHcCCeEEEecC
Q 022312 173 ----GTLRGPQ-----FRGGTTMHGPKP--RSHAIKLNKKVRRLGLKIALSAR---------------AAEGKLLVFEDL 226 (299)
Q Consensus 173 ----Gs~rsP~-----~rGGG~afGPkP--R~y~~klNKK~rrlAlksALSak---------------~~~g~LiVVD~l 226 (299)
|+.|||+ |+|||++|||+| |+|+++||||+|++|+++|||++ +.+++|+|+|++
T Consensus 77 v~g~Gs~RSp~ga~~~~~gGG~~fgP~p~~R~~~~klNkK~rrlAl~SALsaka~~~lv~arGH~i~~~~e~~LvVvd~~ 156 (362)
T 2wwb_H 77 VGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDL 156 (362)
T ss_dssp CCSCSSSSCSSTTTSSSCSSSCCSSSSCSSCCCCCCCCHHHHHHHHHHHHHGGGCSTHHHHHTCCCCSCSSCSBCCCGGG
T ss_pred ccCCCCCCCcccccCCccCCeEECCCCCCCcchhhhcCHHHHHHHHHHHHHhccchhhhhhccccccccccCcEEEEecc
Confidence 9999999 999999999997 99999999999999999999999 889999999999
Q ss_pred CCCCCCHHHHHHHHHhccCC-C--------------------------cEEEEecCCcchhHHHHhhCCCCceEEecCCC
Q 022312 227 EVPSHKTKFIVNYYNQMENT-K--------------------------KVLLCDGGCIHEKLKLATQNLHYVNVLPSVVR 279 (299)
Q Consensus 227 ~~~~~KTK~~~~~Lk~l~~~-k--------------------------~~LiV~~~~~~enl~~A~RNIp~V~v~~~~~L 279 (299)
++.+|||+++++|++++++ + ++|||++ + |+++.+|+||||+|+++++++|
T Consensus 157 -~~~~KTK~~~~~Lk~lg~~~d~~r~~~~~~iRaGkGKmRgRry~~~k~~LiV~~-~-d~~l~~A~RNipgV~v~~v~~L 233 (362)
T 2wwb_H 157 -ESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYA-E-DNGIVKALRNVPGVETANVASL 233 (362)
T ss_dssp -GTCCCHHHHHHHHHHHSCSHHHHHHTSTTSCCCCGGGTTSCCSCCCCCCEEEES-S-SCCCCTTTSCSSSCEEEESSSC
T ss_pred -cccCCHHHHHHHHHhcCCCcchhhhhhhhhcccccccccccccccCCceEEEEc-C-ChhHHHHHhcCCCCcEEeeCCc
Confidence 8999999999999999864 2 5899994 3 8889999999999999999999
Q ss_pred ccccccccc----eEEEeeecc
Q 022312 280 STTQSFLIY----YYFLDFDFK 297 (299)
Q Consensus 280 Nv~dLl~~~----~ifI~~~a~ 297 (299)
|+|||++++ .+++|++|.
T Consensus 234 Nv~dLl~~~~~gr~vV~T~sAl 255 (362)
T 2wwb_H 234 NLLQLAPGAHLGRFVIWTEAAF 255 (362)
T ss_dssp CHHHHSTTSCCCCCEECCTTHH
T ss_pred cHHHHhcccCcCCEEEEEHHHH
Confidence 999999977 899988775
No 13
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=50.27 E-value=11 Score=34.20 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=32.7
Q ss_pred HHHHHHHcccCCCCCceeeeecCC--CCCccccCCCCccCCCCCCCCcccCcccccCCCCc
Q 022312 134 VRWQLAKRQQGTHSTKTISEVSGT--GKKPWRQKGTGRARHGTLRGPQFRGGTTMHGPKPR 192 (299)
Q Consensus 134 v~~q~anrRqGta~TKtRaEVsGs--GrKp~rQKGTGrAR~Gs~rsP~~rGGG~afGPkPR 192 (299)
+..--.+.+.....-..++|++|+ +.++| ||||+++ |.|-..|-| +++|.-|
T Consensus 31 i~~~v~~~~an~Rqgt~~~~~aG~kt~ae~~---GtGR~~a---ri~rqKG~a-rrsP~~r 84 (246)
T 1vq8_C 31 IGKAVRAAQANRKQDYGSDEYAGLRTPAESF---GSGRGQA---HVPKLDGRA-RRVPQAV 84 (246)
T ss_dssp HHHHHHHHHHHTCCCCCCCTTTTTCCCCBCC---CSSSSCC---CCCEETTEE-CSSTTST
T ss_pred HHHHHHHHHHhcccCcccccccCcccceeec---cCCCCcc---ccccccCcc-ccCCccC
Confidence 333333444455555569999999 99999 9999873 222222544 6778743
No 14
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=43.67 E-value=10 Score=36.46 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=34.9
Q ss_pred CchhHHHHHHHHHHHHcccCCCCCceeeeecCCCCCcc-----ccCCCCccCCC
Q 022312 125 IRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPW-----RQKGTGRARHG 173 (299)
Q Consensus 125 ir~dilh~vv~~q~anrRqGta~TKtRaEVsGsGrKp~-----rQKGTGrAR~G 173 (299)
++..++++.-...+-....-++...+.++.||+||... +|+||.|+.+|
T Consensus 35 ih~vv~~~~an~RQgt~~tk~rgevtg~K~wGTGRAraripRv~g~Gs~RSp~g 88 (362)
T 2wwb_H 35 VHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQG 88 (362)
T ss_dssp HHHHHHHHHHHHCCCCCCCSSSSCSSCCSSCCCCSSSCSCSCCCSCSSSSCSST
T ss_pred HHHHHHHHHHhccCCCCCCCcccccccceecCCCCCeeecccccCCCCCCCccc
Confidence 34445555555555666677777779999999999998 47777777663
No 15
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=31.69 E-value=2.1e+02 Score=23.38 Aligned_cols=67 Identities=7% Similarity=0.027 Sum_probs=39.7
Q ss_pred HHcCCeEEEecCC-CCC--CCH-HHHHHHHHhccCCCc-EEEEecCCcchhHHHHhhCCCCceEEecCCCccccc
Q 022312 215 AAEGKLLVFEDLE-VPS--HKT-KFIVNYYNQMENTKK-VLLCDGGCIHEKLKLATQNLHYVNVLPSVVRSTTQS 284 (299)
Q Consensus 215 ~~~g~LiVVD~l~-~~~--~KT-K~~~~~Lk~l~~~k~-~LiV~~~~~~enl~~A~RNIp~V~v~~~~~LNv~dL 284 (299)
+.+-+++++|... .+. +.+ +.+.++|+. .+. ++++.....+..+.....+-+++.++.....|-.++
T Consensus 97 ~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp HCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred ccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHH
Confidence 3456899999832 111 122 233334433 233 555542245777888888889999998887775433
No 16
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=27.43 E-value=2.1e+02 Score=22.82 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=36.8
Q ss_pred eEEEecCCCCCCCHHHHHHHHHhcc-CCCcEEEEecCCcchhHHHHh-hCCCCceEEecCCCcccccc-----ccceEEE
Q 022312 220 LLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDGGCIHEKLKLAT-QNLHYVNVLPSVVRSTTQSF-----LIYYYFL 292 (299)
Q Consensus 220 LiVVD~l~~~~~KTK~~~~~Lk~l~-~~k~~LiV~~~~~~enl~~A~-RNIp~V~v~~~~~LNv~dLl-----~~~~ifI 292 (299)
++.|-+..-...||--..++-..+. .++++|+|+. +...++...+ ..-.++++++...-.+.+++ .||+|||
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~-D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vii 81 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT-DPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIV 81 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC-CTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC-CCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEE
Confidence 3444455555667655555444432 2356777773 3333333322 23344566665542222221 3677777
Q ss_pred eee
Q 022312 293 DFD 295 (299)
Q Consensus 293 ~~~ 295 (299)
+..
T Consensus 82 D~~ 84 (206)
T 4dzz_A 82 DGA 84 (206)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 17
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=27.19 E-value=1.1e+02 Score=25.57 Aligned_cols=60 Identities=5% Similarity=0.204 Sum_probs=39.2
Q ss_pred ccccccHHHH-HHHHHHHHHHH-HHcCCeEEEecCC--CCCCCHHHHHHHHHhccCCCcEEEEe
Q 022312 194 HAIKLNKKVR-RLGLKIALSAR-AAEGKLLVFEDLE--VPSHKTKFIVNYYNQMENTKKVLLCD 253 (299)
Q Consensus 194 y~~klNKK~r-rlAlksALSak-~~~g~LiVVD~l~--~~~~KTK~~~~~Lk~l~~~k~~LiV~ 253 (299)
+...+.--+| +.|+..||+.. +...+++++|... ++....+.+.++|+.+.....+++|+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivit 124 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 4455665554 46777777765 3445899999753 55566778888888875434455554
No 18
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=26.96 E-value=2.3e+02 Score=25.22 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHH--cCCeEEEecCCCCCCCHHHHHHHHHhcc-CCCcEEEEec
Q 022312 202 VRRLGLKIALSARAA--EGKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDG 254 (299)
Q Consensus 202 ~rrlAlksALSak~~--~g~LiVVD~l~~~~~KTK~~~~~Lk~l~-~~k~~LiV~~ 254 (299)
+-...+++.|..... ..++++|-+..-...||--..++-..+. .++++|+|+.
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~ 129 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDC 129 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEec
Confidence 334455666655443 3468888887778889876666555543 3468999984
No 19
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=26.45 E-value=1.1e+02 Score=26.31 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEecC--CCCCCCHHHHHHHHHhccCCCcEEEEe
Q 022312 203 RRLGLKIALSARAAEGKLLVFEDL--EVPSHKTKFIVNYYNQMENTKKVLLCD 253 (299)
Q Consensus 203 rrlAlksALSak~~~g~LiVVD~l--~~~~~KTK~~~~~Lk~l~~~k~~LiV~ 253 (299)
+|+|+..||.. +-+++++|.- .++....+.+.++|+.+..+..+++++
T Consensus 146 qrv~lAral~~---~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 146 QRLAIARAFLR---NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp HHHHHHHHHHH---CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHhc---CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 46777777765 5689999974 366667778888888875334556555
No 20
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=25.70 E-value=1e+02 Score=27.04 Aligned_cols=54 Identities=13% Similarity=0.340 Sum_probs=35.7
Q ss_pred cccHHH-HHHHHHHHHHHHHHcCCeEEEecC--CCCCCCHHHHHHHHHhccCCCcEEEEe
Q 022312 197 KLNKKV-RRLGLKIALSARAAEGKLLVFEDL--EVPSHKTKFIVNYYNQMENTKKVLLCD 253 (299)
Q Consensus 197 klNKK~-rrlAlksALSak~~~g~LiVVD~l--~~~~~KTK~~~~~Lk~l~~~k~~LiV~ 253 (299)
.+..-+ +|+|+..||.. +-+++++|.- .++..-.+.+.++|+++..+..+|+|.
T Consensus 155 ~LSgGqkqRv~lAraL~~---~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivt 211 (260)
T 2ghi_A 155 KLSGGERQRIAIARCLLK---DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIA 211 (260)
T ss_dssp CCCHHHHHHHHHHHHHHH---CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHc---CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 344433 55777777765 5689999974 355556677888888875444555555
No 21
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=24.05 E-value=65 Score=29.51 Aligned_cols=50 Identities=16% Similarity=0.335 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEecCC--CCCCCHHHHHHHHHhccCCCcEEEEe
Q 022312 203 RRLGLKIALSARAAEGKLLVFEDLE--VPSHKTKFIVNYYNQMENTKKVLLCD 253 (299)
Q Consensus 203 rrlAlksALSak~~~g~LiVVD~l~--~~~~KTK~~~~~Lk~l~~~k~~LiV~ 253 (299)
+++++..||...... +++++|+.. ++......+.++|+.+..+..+|+|+
T Consensus 302 qrl~lA~~l~~~~~~-~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~it 353 (415)
T 4aby_A 302 SRVMLAVSTVLGADT-PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVT 353 (415)
T ss_dssp HHHHHHHHHHHCCSS-SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 456666666543222 899999753 56566678888898886434566665
No 22
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=23.77 E-value=1.5e+02 Score=27.06 Aligned_cols=56 Identities=7% Similarity=0.292 Sum_probs=35.9
Q ss_pred ccHHHHH---HHHHHHHHHHHHcC--CeEEEecCC--CCCCCHHHHHHHHHhccCCCcEEEEe
Q 022312 198 LNKKVRR---LGLKIALSARAAEG--KLLVFEDLE--VPSHKTKFIVNYYNQMENTKKVLLCD 253 (299)
Q Consensus 198 lNKK~rr---lAlksALSak~~~g--~LiVVD~l~--~~~~KTK~~~~~Lk~l~~~k~~LiV~ 253 (299)
+..-+++ +|++.|++.-+..+ +++++|+.. ++......+.++|+.+.....+++++
T Consensus 281 lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~t 343 (371)
T 3auy_A 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343 (371)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEE
Confidence 4444444 56677777655544 789999854 55555567788888875434566555
No 23
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=22.02 E-value=2.8e+02 Score=24.28 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHH--cCCeEEEecCCCCCCCHHHHHHHHHhcc-CCCcEEEEec
Q 022312 205 LGLKIALSARAA--EGKLLVFEDLEVPSHKTKFIVNYYNQME-NTKKVLLCDG 254 (299)
Q Consensus 205 lAlksALSak~~--~g~LiVVD~l~~~~~KTK~~~~~Lk~l~-~~k~~LiV~~ 254 (299)
..+++.|..... ..+++.|-+..-...||--..++-..+. .++++|+|+.
T Consensus 67 r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~ 119 (271)
T 3bfv_A 67 RGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDG 119 (271)
T ss_dssp HHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 344444444332 3367878877777889866555554442 3468999984
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=21.09 E-value=92 Score=27.16 Aligned_cols=48 Identities=17% Similarity=0.384 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCeEEEecC--CCCCCCHHHHHHHHHhccCCCcEEEEe
Q 022312 203 RRLGLKIALSARAAEGKLLVFEDL--EVPSHKTKFIVNYYNQMENTKKVLLCD 253 (299)
Q Consensus 203 rrlAlksALSak~~~g~LiVVD~l--~~~~~KTK~~~~~Lk~l~~~k~~LiV~ 253 (299)
+|+|+..||.. +-+++++|.- .++....+.+.++|+.+..+..+++|.
T Consensus 152 qRv~iAraL~~---~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivt 201 (247)
T 2ff7_A 152 QRIAIARALVN---NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIA 201 (247)
T ss_dssp HHHHHHHHHTT---CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 45666666654 4579999974 356566678888888874334566665
No 25
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=20.23 E-value=63 Score=31.35 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHhcc--CCCcEEEEecCCcchhHHHHhhCCCCceEEe
Q 022312 207 LKIALSARAAEGKLLVFEDLEVPSHKTKFIVNYYNQME--NTKKVLLCDGGCIHEKLKLATQNLHYVNVLP 275 (299)
Q Consensus 207 lksALSak~~~g~LiVVD~l~~~~~KTK~~~~~Lk~l~--~~k~~LiV~~~~~~enl~~A~RNIp~V~v~~ 275 (299)
+.+.|+....+-.+|+|||-. ...|+...++++++. ..+.+++|+ ..|..+..|.+|.-..+++.
T Consensus 69 LesVl~qi~~d~eIIlVdDGS--~D~s~~e~dil~~~~~~~~~ri~viH--Qkn~gls~Ar~~~G~~~il~ 135 (391)
T 2wvl_A 69 LEGVLSGIPHEALILVASNSS--PDRFQMERDLLEEFAHLTERPALIFH--QKDPALAEALRAGGYPHPIG 135 (391)
T ss_dssp HHHHHHTSCTTSEEEEEECCC--HHHHHHHHHHHHHHHHHTTCCEEEEE--TTCHHHHHHHHHTTCCTTBC
T ss_pred HHHHHhcCCCCceEEEEECCC--CCChHhHHHHHHHHHhhcccceEEEe--ccChHHHHHHHhcCcchhhc
Confidence 777777776666899999875 445665567777764 246788888 57889999987654444443
Done!