BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022315
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 442 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 495
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 496 ELAETQGKLEEKLQEL 511
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 324 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 377
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 378 ELAETQGKLEEKLQEL 393
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 320 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 373
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 374 ELAETQGKLEEKLQEL 389
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 272 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 325
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 326 ELAETQGKLEEKLQEL 341
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 271 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 324
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 325 ELAETQGKLEEKLQEL 340
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 271 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 324
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 325 ELAETQGKLEEKLQEL 340
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 271 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 324
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 325 ELAETQGKLEEKLQEL 340
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 271 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 324
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 325 ELAETQGKLEEKLQEL 340
>pdb|3UCP|A Chain A, Outer Membrane Endecaheme Cytochrome Unda From Shewanella
Sp. Hrcr-6
pdb|3UFH|A Chain A, Crystal Structure Of Unda With Iron Citrate Bound
pdb|3UFK|A Chain A, Crystal Structure Of Unda Complexed With Iron
Nitrilotriacetate
Length = 874
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 188 KEMSNFKKNCAHCHCQNTSQLTSPNGPKSL----------CDGCISSYGKDKDLHSDSNI 237
+ + + + NC CH N S +S P +L C C +SY KD + S ++
Sbjct: 244 RTVVDLEANCIKCHSTNYSDTSSTAKPLALHGGRRIGIANCQVCHTSYSKDPETGSPLDM 303
Query: 238 GA 239
GA
Sbjct: 304 GA 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,631,555
Number of Sequences: 62578
Number of extensions: 352188
Number of successful extensions: 1107
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 16
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)