BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022315
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L4M6|GATA3_ARATH GATA transcription factor 3 OS=Arabidopsis thaliana GN=GATA3 PE=2
SV=2
Length = 269
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 193 FKKNCAHCHCQNTSQL-TSPNGPKSLCDGC 221
F++ C+HC NT Q T P GPK+LC+ C
Sbjct: 178 FQRRCSHCGTNNTPQWRTGPVGPKTLCNAC 207
>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2
SV=1
Length = 303
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 22/94 (23%)
Query: 129 KCSPNVNEVACKGDAEQVPRKKLKTSIYSSHSSLKHGSCREGSVSNGIDSKSLDAALSEK 188
K +P E C +EQ +KK K + + S S E S S+GI K
Sbjct: 175 KSTPGKPESECYFSSEQHAKKKRKIHLTTRTVS----STLEASNSDGIVRK--------- 221
Query: 189 EMSNFKKNCAHCHCQNTSQLTS-PNGPKSLCDGC 221
C HC T Q P+GPK+LC+ C
Sbjct: 222 --------CTHCETTKTPQWREGPSGPKTLCNAC 247
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 71/165 (43%), Gaps = 33/165 (20%)
Query: 36 LSQDEDPLPSTSRTSELTRK-KCSGVRGKDTID--TSGRGTVSS---FSNSIGAGFTDFK 89
+ D D LPS R +E+T + + D ID S RG S+ F N + DF
Sbjct: 179 IPADTDILPSQRRLAEITELIHTASLLHDDVIDHSESRRGAPSANLEFGNKMAVLAGDF- 237
Query: 90 KERLRSLLRQGVFDLA----PEVDEMLDPVIA------MCQLQSQVRNRKCSPNVNEVAC 139
LL + LA EV E+L VIA QL++ R+ K +P +E
Sbjct: 238 ------LLGRASVALARLRHAEVVELLATVIANLVEGEFMQLKNTARDEK-NPKWSE--- 287
Query: 140 KGDAEQVPRKKLKTSIYSSHSSLKHGSCREGSVSNGIDSKSLDAA 184
E + KT Y +SL SCR ++ G D+ ++DAA
Sbjct: 288 ----ETLTYYLQKT--YLKTASLISKSCRASALLGGADAATVDAA 326
>sp|O82632|GATA9_ARATH GATA transcription factor 9 OS=Arabidopsis thaliana GN=GATA9 PE=2
SV=1
Length = 308
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 195 KNCAHCHCQNTSQL-TSPNGPKSLCDGCISSY 225
+ C HC + T Q T P GPK+LC+ C Y
Sbjct: 197 RRCLHCATEKTPQWRTGPMGPKTLCNACGVRY 228
>sp|P69781|GAT12_ARATH GATA transcription factor 12 OS=Arabidopsis thaliana GN=GATA12 PE=2
SV=1
Length = 331
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 194 KKNCAHCHCQNTSQL-TSPNGPKSLCDGCISSY 225
++ C HC T Q T P GPK+LC+ C Y
Sbjct: 218 ERRCLHCATDKTPQWRTGPMGPKTLCNACGVRY 250
>sp|A9KX20|YIDC_SHEB9 Membrane protein insertase YidC OS=Shewanella baltica (strain
OS195) GN=yidC PE=3 SV=1
Length = 541
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 1 MSEASKSLLASTDH--GQLGPIGPDYFGFYTCEIMELLSQDED-PLPSTSRTSELTRKKC 57
++ SK + TD Q+ PIG D + + + QD+D P +T + T
Sbjct: 61 VTATSKLITVKTDQLDVQINPIGGDIV--FAALVSHKMEQDKDQPFVLLEQTKDFTYIAQ 118
Query: 58 SGVRGKDTIDTSGRGTVSSFSNS 80
SG+ G+D ID+S +G ++FS +
Sbjct: 119 SGLIGRDGIDSSAKGR-AAFSTA 140
>sp|A6WUK4|YIDC_SHEB8 Membrane protein insertase YidC OS=Shewanella baltica (strain
OS185) GN=yidC PE=3 SV=1
Length = 541
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 1 MSEASKSLLASTDH--GQLGPIGPDYFGFYTCEIMELLSQDED-PLPSTSRTSELTRKKC 57
++ SK + TD Q+ PIG D + + + QD+D P +T + T
Sbjct: 61 VTATSKLITVKTDQLDVQINPIGGDIV--FAALVSHKMEQDKDQPFVLLEQTKDFTYIAQ 118
Query: 58 SGVRGKDTIDTSGRGTVSSFSNS 80
SG+ G+D ID+S +G ++FS +
Sbjct: 119 SGLIGRDGIDSSAKGR-AAFSTA 140
>sp|A3DAS8|YIDC_SHEB5 Membrane protein insertase YidC OS=Shewanella baltica (strain OS155
/ ATCC BAA-1091) GN=yidC PE=3 SV=1
Length = 541
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 1 MSEASKSLLASTDH--GQLGPIGPDYFGFYTCEIMELLSQDED-PLPSTSRTSELTRKKC 57
++ SK + TD Q+ PIG D + + + QD+D P +T + T
Sbjct: 61 VTATSKLITVKTDQLDVQINPIGGDIV--FAALVSHKMEQDKDQPFVLLEQTKDFTYIAQ 118
Query: 58 SGVRGKDTIDTSGRGTVSSFSNS 80
SG+ G+D ID+S +G ++FS +
Sbjct: 119 SGLIGRDGIDSSAKGR-AAFSTA 140
>sp|B8EDW5|YIDC_SHEB2 Membrane protein insertase YidC OS=Shewanella baltica (strain
OS223) GN=yidC PE=3 SV=1
Length = 541
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 1 MSEASKSLLASTDH--GQLGPIGPDYFGFYTCEIMELLSQDED-PLPSTSRTSELTRKKC 57
++ SK + TD Q+ PIG D + + + QD+D P +T + T
Sbjct: 61 VTATSKLITVKTDQLDVQINPIGGDIV--FAALVSHKMEQDKDQPFVLLEQTKDFTYIAQ 118
Query: 58 SGVRGKDTIDTSGRGTVSSFSNS 80
SG+ G+D ID+S +G ++FS +
Sbjct: 119 SGLIGRDGIDSSAKGR-AAFSTA 140
>sp|Q4VBJ9|MORN5_DANRE MORN repeat-containing protein 5 OS=Danio rerio GN=morn5 PE=2 SV=1
Length = 178
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 160 SSLKHGSCREG--SVSNGIDSKSLDAALSE-KEMSNFKKNCAHCHCQNTSQLTSPNGPKS 216
+ + G C+EG + S+G+ K D + K+ + + C SQLT P+ P+
Sbjct: 56 GTWEKGICKEGKYTFSDGLKYKETDWDYCDGKDRRFYSERCNGLKPAGESQLTDPDPPRV 115
Query: 217 LCDGCISSYGKDKDLHSDSNIGADKENGEVDDDLQFLLESDSSEVEETV 265
+ DGC + D D N K D FL +D E E V
Sbjct: 116 IPDGCYDT----GDGFYDPNTRVVKGY-----DGNFLRNADDQEHEWIV 155
>sp|O49743|GATA4_ARATH GATA transcription factor 4 OS=Arabidopsis thaliana GN=GATA4 PE=2
SV=1
Length = 240
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 195 KNCAHCHCQNTSQL-TSPNGPKSLCDGCISSY 225
+ C HC + T Q T P GPK+LC+ C Y
Sbjct: 158 RRCTHCASEKTPQWRTGPLGPKTLCNACGVRY 189
>sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2
SV=2
Length = 274
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 195 KNCAHCHCQNTSQLTS-PNGPKSLCDGCISSY 225
+ C HC + T Q + P GPK+LC+ C Y
Sbjct: 194 RKCQHCGAEKTPQWRAGPAGPKTLCNACGVRY 225
>sp|Q8LG10|GAT15_ARATH GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2
SV=2
Length = 149
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 176 IDSKSLDAALS-------------EKEMSNFKKNCAHCHCQNTSQLTS-PNGPKSLCDGC 221
IDS+S+++ L+ + +SN KK+CA C T P GPKSLC+ C
Sbjct: 9 IDSESMESKLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNAC 68
Query: 222 -ISSYGKDKDLHSD 234
I + K + L S+
Sbjct: 69 GIRNRKKRRTLISN 82
>sp|O49741|GATA2_ARATH GATA transcription factor 2 OS=Arabidopsis thaliana GN=GATA2 PE=2
SV=1
Length = 264
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 159 HSSLKHGSCREGSVSNGIDSKSLDAALSEKEMSNFKKNCAHCHCQNTSQL-TSPNGPKSL 217
HS+ K +E S G ++ SE + C HC + T Q T P GPK+L
Sbjct: 143 HSAAKFKPKKEQSGGGGGGGGRHQSSSSETTEGGGMRRCTHCASEKTPQWRTGPLGPKTL 202
Query: 218 CDGC 221
C+ C
Sbjct: 203 CNAC 206
>sp|O28343|Y1936_ARCFU UPF0278 protein AF_1936 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_1936 PE=3 SV=1
Length = 227
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 75 SSFSNSIGAGFTDFKKERLRSLLRQGVFDLAPEVDEML 112
S IGA + F+ ++ R+++RQG+ D AP++D +L
Sbjct: 133 SKIEEEIGALISKFR-DKYRAVMRQGILDSAPDLDVLL 169
>sp|Q01371|WC1_NEUCR White collar 1 protein OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-1
PE=2 SV=2
Length = 1167
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 192 NFKKNCAHCHCQNTSQL-TSPNGPKSLCDGCISSYGK 227
N ++CA+CH +NT + P+G + LC+ C + K
Sbjct: 929 NMVRDCANCHTRNTPEWRRGPSGNRDLCNSCGLRWAK 965
>sp|Q6ZQ88|KDM1A_MOUSE Lysine-specific histone demethylase 1A OS=Mus musculus GN=Kdm1a
PE=1 SV=2
Length = 853
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 443 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 496
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 497 ELAETQGKLEEKLQEL 512
>sp|O60341|KDM1A_HUMAN Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A
PE=1 SV=2
Length = 852
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 215 KSLCDGCISSYGKDKDLHSDSNIGADKENGEV----DDDLQFLLESDSSEVEETVKKYSD 270
K L + ++ K K+LH KE EV D +FL++S ++ K+Y D
Sbjct: 442 KELLNKMVNLKEKIKELHQQY-----KEASEVKPPRDITAEFLVKSKHRDLTALCKEY-D 495
Query: 271 ELFATLGHMEQKLEEL 286
EL T G +E+KL+EL
Sbjct: 496 ELAETQGKLEEKLQEL 511
>sp|Q9ZHR4|CCOP_AZOBR Cbb3-type cytochrome c oxidase subunit CcoP OS=Azospirillum
brasilense GN=ccoP PE=3 SV=1
Length = 295
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 176 IDSKSLDAALSEKEMSNFKKNCAHCHCQN 204
++ +S DAA +EK + + +NCA CH +N
Sbjct: 199 LNKRSTDAAAAEKGKTVYDENCAACHGEN 227
>sp|Q9SV30|GATA8_ARATH GATA transcription factor 8 OS=Arabidopsis thaliana GN=GATA8 PE=2
SV=1
Length = 322
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 195 KNCAHCHCQNTSQL-TSPNGPKSLCDGCISSY 225
+ C HC T Q P GPK+LC+ C Y
Sbjct: 229 RKCMHCEVTKTPQWRLGPMGPKTLCNACGVRY 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,739,798
Number of Sequences: 539616
Number of extensions: 4540913
Number of successful extensions: 11864
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 11800
Number of HSP's gapped (non-prelim): 122
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)