Query 022315
Match_columns 299
No_of_seqs 66 out of 68
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 03:30:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vut_I AREA, nitrogen regulato 99.3 1.5E-13 5E-18 95.7 -0.4 36 194-230 1-37 (43)
2 1gnf_A Transcription factor GA 99.3 7.6E-13 2.6E-17 93.3 1.1 37 193-230 3-40 (46)
3 3dfx_A Trans-acting T-cell-spe 99.2 1.1E-12 3.8E-17 97.7 1.4 37 193-230 6-43 (63)
4 4gat_A Nitrogen regulatory pro 99.1 2.4E-12 8.1E-17 96.4 -1.2 39 191-230 6-45 (66)
5 2kae_A GATA-type transcription 99.0 9.2E-11 3.1E-15 89.1 0.7 38 192-229 6-44 (71)
6 4hc9_A Trans-acting T-cell-spe 98.7 2.3E-09 7.9E-14 86.5 0.6 35 194-229 59-94 (115)
7 4hc9_A Trans-acting T-cell-spe 98.4 2.9E-08 9.8E-13 80.2 -0.1 36 192-228 3-39 (115)
8 2yrk_A Zinc finger homeobox pr 90.7 0.093 3.2E-06 38.8 1.6 22 208-229 6-27 (55)
9 1k81_A EIF-2-beta, probable tr 49.9 3.3 0.00011 27.3 -0.1 28 196-225 2-31 (36)
10 4h62_V Mediator of RNA polymer 45.5 12 0.00042 24.7 2.1 14 279-292 10-23 (31)
11 3cng_A Nudix hydrolase; struct 43.4 9.8 0.00034 30.2 1.7 33 193-225 2-36 (189)
12 1zme_C Proline utilization tra 39.2 32 0.0011 23.3 3.6 25 266-290 43-67 (70)
13 3cw2_K Translation initiation 38.2 16 0.00056 30.2 2.3 29 195-224 104-133 (139)
14 2d74_B Translation initiation 36.5 19 0.00063 30.3 2.4 31 195-226 105-136 (148)
15 1pft_A TFIIB, PFTFIIBN; N-term 36.4 14 0.00048 24.7 1.4 35 192-228 3-37 (50)
16 1c75_A Cytochrome C-553; heme, 34.3 5.9 0.0002 26.5 -0.8 20 193-215 7-26 (71)
17 2lvu_A Zinc finger and BTB dom 39.8 8.8 0.0003 20.0 0.0 15 217-231 4-18 (26)
18 1hro_A Cytochrome C2; electron 32.1 15 0.0005 26.3 1.0 23 191-215 13-35 (106)
19 1nee_A EIF-2-beta, probable tr 31.2 17 0.00058 30.1 1.3 30 195-225 103-133 (138)
20 2lcq_A Putative toxin VAPC6; P 30.2 15 0.00053 29.3 0.9 32 192-228 130-161 (165)
21 1znf_A 31ST zinc finger from X 29.9 18 0.00061 18.7 0.9 14 217-230 3-16 (27)
22 1rik_A E6APC1 peptide; E6-bind 29.5 10 0.00036 19.9 -0.1 15 217-231 4-18 (29)
23 2kvh_A Zinc finger and BTB dom 28.5 17 0.00057 19.1 0.6 13 217-229 5-17 (27)
24 1paa_A Yeast transcription fac 28.3 21 0.00072 18.8 1.0 14 217-230 4-17 (30)
25 1klr_A Zinc finger Y-chromosom 27.8 14 0.00046 19.3 0.1 14 217-230 4-17 (30)
26 1ard_A Yeast transcription fac 26.3 22 0.00076 18.4 0.9 14 217-230 4-17 (29)
27 3cp5_A Cytochrome C; electron 25.7 26 0.00088 25.5 1.3 21 184-204 32-52 (124)
28 2kvf_A Zinc finger and BTB dom 25.6 10 0.00036 19.9 -0.6 14 217-230 5-18 (28)
29 3h0g_L DNA-directed RNA polyme 25.4 51 0.0018 24.3 2.9 32 192-227 19-50 (63)
30 1ycc_A Cytochrome C; electron 24.3 20 0.00067 25.6 0.5 13 192-204 14-26 (108)
31 2zon_G Cytochrome C551; nitrit 24.2 11 0.00038 25.9 -0.9 15 190-204 13-27 (87)
32 2lvt_A Zinc finger and BTB dom 29.8 16 0.00056 19.3 0.0 15 217-231 4-18 (29)
33 2elr_A Zinc finger protein 406 23.9 14 0.00047 20.6 -0.3 15 216-230 10-24 (36)
34 2kvg_A Zinc finger and BTB dom 23.6 20 0.00068 19.0 0.3 13 217-229 5-17 (27)
35 1e29_A Cytochrome C549; electr 23.1 15 0.0005 28.5 -0.4 22 181-202 21-42 (135)
36 2kwj_A Zinc finger protein DPF 23.1 50 0.0017 25.4 2.6 33 196-228 3-36 (114)
37 2elx_A Zinc finger protein 406 23.0 13 0.00044 20.5 -0.6 15 216-230 8-22 (35)
38 1ccr_A Cytochrome C; electron 22.8 25 0.00087 25.3 0.8 14 191-204 17-30 (112)
39 2lvr_A Zinc finger and BTB dom 28.2 18 0.00062 18.9 0.0 16 217-232 5-20 (30)
40 1pwb_A SP-D, PSP-D, pulmonary 22.5 77 0.0026 24.7 3.6 22 267-288 31-52 (177)
41 2w9k_A Cytochrome C, cytochrom 22.5 22 0.00076 25.8 0.5 13 192-204 20-32 (114)
42 2zqm_A Prefoldin beta subunit 22.4 1.3E+02 0.0046 22.2 4.8 39 251-289 61-99 (117)
43 1p7a_A BF3, BKLF, kruppel-like 22.3 29 0.00099 19.4 0.9 14 216-229 12-25 (37)
44 2jo7_A Glycosylphosphatidylino 22.3 31 0.0011 31.1 1.5 41 249-293 42-85 (224)
45 1jdl_A C552, cytochrome C2, IS 22.0 44 0.0015 24.3 2.0 10 195-204 13-22 (121)
46 1twf_L ABC10-alpha, DNA-direct 21.6 42 0.0014 24.9 1.8 29 192-224 26-54 (70)
47 1fu9_A U-shaped transcriptiona 21.5 24 0.00084 24.0 0.5 13 216-228 9-21 (36)
48 1srk_A Zinc finger protein ZFP 21.5 27 0.00092 19.3 0.6 15 216-230 8-22 (35)
49 1i54_A Cytochrome C; zinc-porp 21.3 30 0.001 24.3 0.9 12 193-204 10-21 (103)
50 2zjr_Z 50S ribosomal protein L 21.2 51 0.0017 23.8 2.1 28 194-231 30-57 (60)
51 3m97_X Cytochrome C-552, cytoc 21.0 47 0.0016 26.7 2.1 21 191-215 49-69 (140)
52 2elo_A Zinc finger protein 406 20.9 26 0.0009 19.6 0.5 15 216-230 10-24 (37)
53 2elp_A Zinc finger protein 406 20.6 31 0.001 19.4 0.7 13 216-228 10-22 (37)
54 2bh4_X Cytochrome C-550; C-typ 20.5 37 0.0013 26.5 1.4 13 192-205 11-23 (134)
55 3ljm_A Coil Ser L9C; de novo d 20.5 1.3E+02 0.0046 19.7 3.8 24 263-286 4-27 (31)
56 2m0d_A Zinc finger and BTB dom 20.4 29 0.00099 17.9 0.5 14 217-230 5-18 (30)
57 2m0e_A Zinc finger and BTB dom 20.4 28 0.00094 17.8 0.5 13 217-229 4-16 (29)
No 1
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.31 E-value=1.5e-13 Score=95.67 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=32.8
Q ss_pred ccccCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315 194 KKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD 230 (299)
Q Consensus 194 ~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~ 230 (299)
++.|++|+|++||+ |.||.|| +||||||++|++.+.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 37 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence 36899999999999 9999999 999999999998763
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.26 E-value=7.6e-13 Score=93.30 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=33.8
Q ss_pred cccccCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315 193 FKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD 230 (299)
Q Consensus 193 ~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~ 230 (299)
..+.|++|+|++||+ |.||.|| +||||||++|++...
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQ 40 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCS
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCC
Confidence 467899999999999 9999999 999999999998663
No 3
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.25 E-value=1.1e-12 Score=97.66 Aligned_cols=37 Identities=24% Similarity=0.521 Sum_probs=34.2
Q ss_pred cccccCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315 193 FKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD 230 (299)
Q Consensus 193 ~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~ 230 (299)
..+.|++|+|++||+ |.||.|| +||||||++|++.+.
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI 43 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS
T ss_pred CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC
Confidence 467899999999999 9999999 999999999998773
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.14 E-value=2.4e-12 Score=96.41 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=35.3
Q ss_pred hccccccCccccccccC-cCCCCCCccccccccccccCCcc
Q 022315 191 SNFKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDKD 230 (299)
Q Consensus 191 ~~~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r~ 230 (299)
++..+.|++|+|++||+ |.||.|+ +||||||++|++...
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence 35678999999999999 9999999 999999999988663
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=98.96 E-value=9.2e-11 Score=89.08 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=30.4
Q ss_pred ccccccCccccccccC-cCCCCCCccccccccccccCCc
Q 022315 192 NFKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDK 229 (299)
Q Consensus 192 ~~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r 229 (299)
...+.|+||+|++||+ |.||.++-+||||||++|++..
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~ 44 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN 44 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC
Confidence 4578999999999999 8844333399999999999865
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=98.69 E-value=2.3e-09 Score=86.51 Aligned_cols=35 Identities=26% Similarity=0.619 Sum_probs=32.5
Q ss_pred ccccCccccccccC-cCCCCCCccccccccccccCCc
Q 022315 194 KKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKDK 229 (299)
Q Consensus 194 ~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~r 229 (299)
...|++|+|+.||+ |.||.| ++||||||++|++..
T Consensus 59 ~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~ 94 (115)
T 4hc9_A 59 GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHN 94 (115)
T ss_dssp TCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred cccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhC
Confidence 37899999999999 999999 999999999998765
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=98.42 E-value=2.9e-08 Score=80.16 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=30.3
Q ss_pred ccccccCccccccccC-cCCCCCCccccccccccccCC
Q 022315 192 NFKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKD 228 (299)
Q Consensus 192 ~~~r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~ 228 (299)
+..+.|++|+|+.||+ |-||.| ..||||||++|+..
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~ 39 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMN 39 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhc
Confidence 4678999999999999 999999 79999999988643
No 8
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=90.73 E-value=0.093 Score=38.77 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.5
Q ss_pred cCCCCCCccccccccccccCCc
Q 022315 208 LTSPNGPKSLCDGCISSYGKDK 229 (299)
Q Consensus 208 R~GP~GPKSLCNACGiRyrk~r 229 (299)
-+||.||++-|.-||+.|--+-
T Consensus 6 ~~~~~~P~~eC~lC~vkYs~r~ 27 (55)
T 2yrk_A 6 SGGTDGTKPECTLCGVKYSARL 27 (55)
T ss_dssp CCCCCCCCSCCTTTTCCCCSSS
T ss_pred CCCCCCCCccccccCccccccc
Confidence 5799999999999999997653
No 9
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=49.88 E-value=3.3 Score=27.27 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=20.2
Q ss_pred ccCccccccccC-cCCCCCCccc-cccccccc
Q 022315 196 NCAHCHCQNTSQ-LTSPNGPKSL-CDGCISSY 225 (299)
Q Consensus 196 ~C~~C~ttkTp~-R~GP~GPKSL-CNACGiRy 225 (299)
.|..|+...|-+ +.. +--.| |+|||-+.
T Consensus 2 lC~~C~~peT~l~~~~--~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEG--RVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEET--TEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeC--CcEEEEhhcCCCcc
Confidence 488999999988 532 33333 99999764
No 10
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=45.51 E-value=12 Score=24.67 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHh
Q 022315 279 MEQKLEELLNTVVS 292 (299)
Q Consensus 279 meq~le~lld~v~~ 292 (299)
=|.|+|+|||+.+-
T Consensus 10 dekqieelldncie 23 (31)
T 4h62_V 10 DEKQIEELLDNCIE 23 (31)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 37899999998654
No 11
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=43.41 E-value=9.8 Score=30.16 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=27.0
Q ss_pred cccccCccccccccC-cCCCCCCcccccccc-ccc
Q 022315 193 FKKNCAHCHCQNTSQ-LTSPNGPKSLCDGCI-SSY 225 (299)
Q Consensus 193 ~~r~C~~C~ttkTp~-R~GP~GPKSLCNACG-iRy 225 (299)
..+-|..|++.-+.. ..|..+..-.|-.|| ..|
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~ 36 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIHY 36 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEEC
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCCccC
Confidence 357899999998876 788888999999999 344
No 12
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=39.16 E-value=32 Score=23.34 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHhHHHHHHHHHHHHH
Q 022315 266 KKYSDELFATLGHMEQKLEELLNTV 290 (299)
Q Consensus 266 kkysdel~~tlg~meq~le~lld~v 290 (299)
.+|-++|-..+..||++|+.|-..+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888999999888876654
No 13
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=38.23 E-value=16 Score=30.24 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=19.5
Q ss_pred cccCccccccccC-cCCCCCCcccccccccc
Q 022315 195 KNCAHCHCQNTSQ-LTSPNGPKSLCDGCISS 224 (299)
Q Consensus 195 r~C~~C~ttkTp~-R~GP~GPKSLCNACGiR 224 (299)
-.|..|+...|-+ +.+ .--.--|+|||-+
T Consensus 104 VlC~~C~sPdT~l~k~~-r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEK-KSWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSC-STTTSSCCC----
T ss_pred eECCCCCCcCcEEEEeC-CeEEEEecCCCCC
Confidence 4799999999999 644 3345679999975
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=36.49 E-value=19 Score=30.29 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=23.9
Q ss_pred cccCccccccccC-cCCCCCCcccccccccccc
Q 022315 195 KNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYG 226 (299)
Q Consensus 195 r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyr 226 (299)
-.|..|+...|-+ +.+ .--.--|+|||-+.-
T Consensus 105 VlC~~C~sPdT~L~k~~-r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRD-RFHFLKCEACGAETP 136 (148)
T ss_dssp SSCSSSCCTTCCCCBSS-SSBCCCCSSSCCCCC
T ss_pred EECCCCCCcCcEEEEeC-CEEEEEecCCCCCcc
Confidence 5799999999999 643 334566999997643
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=36.41 E-value=14 Score=24.67 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=24.5
Q ss_pred ccccccCccccccccCcCCCCCCccccccccccccCC
Q 022315 192 NFKKNCAHCHCQNTSQLTSPNGPKSLCDGCISSYGKD 228 (299)
Q Consensus 192 ~~~r~C~~C~ttkTp~R~GP~GPKSLCNACGiRyrk~ 228 (299)
+....|..|+.+ +++.-+..-...|..||.-|...
T Consensus 3 ~~~~~CP~C~~~--~l~~d~~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 3 NKQKVCPACESA--ELIYDPERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp SSCCSCTTTSCC--CEEEETTTTEEEESSSCCBCCCC
T ss_pred CccEeCcCCCCc--ceEEcCCCCeEECcccCCccccc
Confidence 345679999773 45444555568999999988654
No 16
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=34.30 E-value=5.9 Score=26.52 Aligned_cols=20 Identities=30% Similarity=0.782 Sum_probs=13.1
Q ss_pred cccccCccccccccCcCCCCCCc
Q 022315 193 FKKNCAHCHCQNTSQLTSPNGPK 215 (299)
Q Consensus 193 ~~r~C~~C~ttkTp~R~GP~GPK 215 (299)
+...|+.||... ..|..||.
T Consensus 7 ~~~~C~~CHg~~---g~g~~gP~ 26 (71)
T 1c75_A 7 VQQKCISCHGGD---LTGASAPA 26 (71)
T ss_dssp HHHHTHHHHCTT---SSCSSSCC
T ss_pred HHHHHHHHcCCC---CCCCCCCC
Confidence 456899999875 33444553
No 17
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=39.84 E-value=8.8 Score=20.05 Aligned_cols=15 Identities=20% Similarity=0.682 Sum_probs=11.8
Q ss_pred ccccccccccCCccc
Q 022315 217 LCDGCISSYGKDKDL 231 (299)
Q Consensus 217 LCNACGiRyrk~r~~ 231 (299)
-|+-||.+|.....+
T Consensus 4 ~C~~C~k~f~~~~~l 18 (26)
T 2lvu_A 4 VCERCGKRFVQSSQL 18 (26)
Confidence 489999999876544
No 18
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=32.07 E-value=15 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=14.4
Q ss_pred hccccccCccccccccCcCCCCCCc
Q 022315 191 SNFKKNCAHCHCQNTSQLTSPNGPK 215 (299)
Q Consensus 191 ~~~~r~C~~C~ttkTp~R~GP~GPK 215 (299)
..+...|+.||+...- .+..||.
T Consensus 13 ~lf~~~C~~CH~~~g~--~~~~gP~ 35 (106)
T 1hro_A 13 HLFHTICITCHTDIKG--ANKVGPS 35 (106)
T ss_dssp HHHTTTGGGTCCSSTT--CBSSSCC
T ss_pred HHHHcchhhhCCCCCC--CCCCCCC
Confidence 3456679999987732 2334553
No 19
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=31.16 E-value=17 Score=30.08 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=23.0
Q ss_pred cccCccccccccC-cCCCCCCccccccccccc
Q 022315 195 KNCAHCHCQNTSQ-LTSPNGPKSLCDGCISSY 225 (299)
Q Consensus 195 r~C~~C~ttkTp~-R~GP~GPKSLCNACGiRy 225 (299)
-.|..|+...|-+ +.+ .--.--|+|||-+-
T Consensus 103 VlC~~C~sPdT~l~k~~-r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 103 VICHECNRPDTRIIREG-RISLLKCEACGAKA 133 (138)
T ss_dssp HHHTCCSSCSSCCEEET-TTTEEECSTTSCCC
T ss_pred EECCCCCCcCcEEEEcC-CeEEEEccCCCCCc
Confidence 4799999999999 643 23456799999753
No 20
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=30.20 E-value=15 Score=29.34 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=23.5
Q ss_pred ccccccCccccccccCcCCCCCCccccccccccccCC
Q 022315 192 NFKKNCAHCHCQNTSQLTSPNGPKSLCDGCISSYGKD 228 (299)
Q Consensus 192 ~~~r~C~~C~ttkTp~R~GP~GPKSLCNACGiRyrk~ 228 (299)
.....|..|+..-... .|..-|..||...++.
T Consensus 130 ~~~y~C~~Cg~~~~~~-----~~~~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 130 KWRYVCIGCGRKFSTL-----PPGGVCPDCGSKVKLI 161 (165)
T ss_dssp CCCEEESSSCCEESSC-----CGGGBCTTTCCBEEEC
T ss_pred cEEEECCCCCCcccCC-----CCCCcCCCCCCcceeC
Confidence 4567899999765321 7778999999886543
No 21
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.93 E-value=18 Score=18.66 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=10.8
Q ss_pred ccccccccccCCcc
Q 022315 217 LCDGCISSYGKDKD 230 (299)
Q Consensus 217 LCNACGiRyrk~r~ 230 (299)
-|+-||.+|.....
T Consensus 3 ~C~~C~k~f~~~~~ 16 (27)
T 1znf_A 3 KCGLCERSFVEKSA 16 (27)
T ss_dssp BCSSSCCBCSSHHH
T ss_pred cCCCCCCcCCCHHH
Confidence 48999999987543
No 22
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=29.53 E-value=10 Score=19.87 Aligned_cols=15 Identities=20% Similarity=0.607 Sum_probs=11.6
Q ss_pred ccccccccccCCccc
Q 022315 217 LCDGCISSYGKDKDL 231 (299)
Q Consensus 217 LCNACGiRyrk~r~~ 231 (299)
-|+.||.+|.....+
T Consensus 4 ~C~~C~k~f~~~~~l 18 (29)
T 1rik_A 4 ACPECPKRFMRSDHL 18 (29)
T ss_dssp ECSSSSCEESCSHHH
T ss_pred cCCCCCchhCCHHHH
Confidence 589999999876543
No 23
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.55 E-value=17 Score=19.07 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=10.4
Q ss_pred ccccccccccCCc
Q 022315 217 LCDGCISSYGKDK 229 (299)
Q Consensus 217 LCNACGiRyrk~r 229 (299)
-|+-||.+|....
T Consensus 5 ~C~~C~k~f~~~~ 17 (27)
T 2kvh_A 5 SCSLCPQRSRDFS 17 (27)
T ss_dssp ECSSSSCEESSHH
T ss_pred cCCCcChhhCCHH
Confidence 4999999997654
No 24
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=28.31 E-value=21 Score=18.76 Aligned_cols=14 Identities=14% Similarity=0.441 Sum_probs=11.1
Q ss_pred ccccccccccCCcc
Q 022315 217 LCDGCISSYGKDKD 230 (299)
Q Consensus 217 LCNACGiRyrk~r~ 230 (299)
-|+.||..|.....
T Consensus 4 ~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 4 ACGLCNRAFTRRDL 17 (30)
T ss_dssp BCTTTCCBCSSSHH
T ss_pred CCcccCcccCChHH
Confidence 59999999987654
No 25
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=27.82 E-value=14 Score=19.27 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=11.0
Q ss_pred ccccccccccCCcc
Q 022315 217 LCDGCISSYGKDKD 230 (299)
Q Consensus 217 LCNACGiRyrk~r~ 230 (299)
-|+-||.+|.....
T Consensus 4 ~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 4 QCQYCEFRSADSSN 17 (30)
T ss_dssp CCSSSSCCCSCSHH
T ss_pred cCCCCCCccCCHHH
Confidence 58999999987654
No 26
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.35 E-value=22 Score=18.40 Aligned_cols=14 Identities=14% Similarity=0.840 Sum_probs=10.9
Q ss_pred ccccccccccCCcc
Q 022315 217 LCDGCISSYGKDKD 230 (299)
Q Consensus 217 LCNACGiRyrk~r~ 230 (299)
.|+.||..|.....
T Consensus 4 ~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 4 VCEVCTRAFARQEH 17 (29)
T ss_dssp BCTTTCCBCSSHHH
T ss_pred ECCCCCcccCCHHH
Confidence 59999999986543
No 27
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=25.69 E-value=26 Score=25.46 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=13.5
Q ss_pred HhHHhhhhccccccCcccccc
Q 022315 184 ALSEKEMSNFKKNCAHCHCQN 204 (299)
Q Consensus 184 a~s~~~~~~~~r~C~~C~ttk 204 (299)
+....-...+...|+.||...
T Consensus 32 ~~~~~G~~l~~~~C~~CH~~~ 52 (124)
T 3cp5_A 32 ALAQQGEQLFNTYCTACHRLD 52 (124)
T ss_dssp HHHHHHHHHHHHHTTTTCCSS
T ss_pred HHHHHHHHHHHHhhHHhCCCC
Confidence 333333444566899999875
No 28
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.56 E-value=10 Score=19.90 Aligned_cols=14 Identities=14% Similarity=0.451 Sum_probs=10.7
Q ss_pred ccccccccccCCcc
Q 022315 217 LCDGCISSYGKDKD 230 (299)
Q Consensus 217 LCNACGiRyrk~r~ 230 (299)
-|+-||.+|.....
T Consensus 5 ~C~~C~k~f~~~~~ 18 (28)
T 2kvf_A 5 SCSVCGKRFSLKHQ 18 (28)
T ss_dssp ECSSSCCEESCHHH
T ss_pred cCCCCCcccCCHHH
Confidence 48999999886543
No 29
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.35 E-value=51 Score=24.34 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=24.2
Q ss_pred ccccccCccccccccCcCCCCCCccccccccccccC
Q 022315 192 NFKKNCAHCHCQNTSQLTSPNGPKSLCDGCISSYGK 227 (299)
Q Consensus 192 ~~~r~C~~C~ttkTp~R~GP~GPKSLCNACGiRyrk 227 (299)
...-.|++|++..... .++.--|.-||-|.=-
T Consensus 19 ~v~Y~C~~Cg~~~~l~----~~~~iRC~~CG~RILy 50 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ----AKEVIRCRECGHRVMY 50 (63)
T ss_dssp CCCCBCSSSCCBCCCC----SSSCCCCSSSCCCCCB
T ss_pred CeEEECCCCCCeeecC----CCCceECCCCCcEEEE
Confidence 3567999999988644 3567889999988543
No 30
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=24.30 E-value=20 Score=25.64 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=9.9
Q ss_pred ccccccCcccccc
Q 022315 192 NFKKNCAHCHCQN 204 (299)
Q Consensus 192 ~~~r~C~~C~ttk 204 (299)
.+...|+.||...
T Consensus 14 lf~~~C~~CH~~~ 26 (108)
T 1ycc_A 14 LFKTRCLQCHTVE 26 (108)
T ss_dssp HHHHHTTTTCCCS
T ss_pred HHHhhCcccCCCC
Confidence 3455799999876
No 31
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=24.21 E-value=11 Score=25.87 Aligned_cols=15 Identities=20% Similarity=0.687 Sum_probs=11.3
Q ss_pred hhccccccCcccccc
Q 022315 190 MSNFKKNCAHCHCQN 204 (299)
Q Consensus 190 ~~~~~r~C~~C~ttk 204 (299)
...+...|+.||...
T Consensus 13 ~~l~~~~C~~CHg~~ 27 (87)
T 2zon_G 13 EKLYRSACVVCHASG 27 (87)
T ss_dssp HHHHHHTTHHHHTTT
T ss_pred HHHHHHHhHHHcCCC
Confidence 344567899999876
No 32
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=29.84 E-value=16 Score=19.25 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=11.7
Q ss_pred ccccccccccCCccc
Q 022315 217 LCDGCISSYGKDKDL 231 (299)
Q Consensus 217 LCNACGiRyrk~r~~ 231 (299)
-|+-||..|.....+
T Consensus 4 ~C~~C~k~f~~~~~l 18 (29)
T 2lvt_A 4 QCVMCGKAFTQASSL 18 (29)
Confidence 489999999876654
No 33
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.92 E-value=14 Score=20.58 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=11.8
Q ss_pred cccccccccccCCcc
Q 022315 216 SLCDGCISSYGKDKD 230 (299)
Q Consensus 216 SLCNACGiRyrk~r~ 230 (299)
--|+-||..|.....
T Consensus 10 ~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 10 HLCDMCGKKFKSKGT 24 (36)
T ss_dssp CBCTTTCCBCSSHHH
T ss_pred eecCcCCCCcCchHH
Confidence 469999999987653
No 34
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=23.56 E-value=20 Score=19.00 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=10.3
Q ss_pred ccccccccccCCc
Q 022315 217 LCDGCISSYGKDK 229 (299)
Q Consensus 217 LCNACGiRyrk~r 229 (299)
-|+-||.+|....
T Consensus 5 ~C~~C~k~f~~~~ 17 (27)
T 2kvg_A 5 RCPLCRAGCPSLA 17 (27)
T ss_dssp EETTTTEEESCHH
T ss_pred CCCCCCcccCCHH
Confidence 4999999997654
No 35
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=23.10 E-value=15 Score=28.45 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=14.5
Q ss_pred hhHHhHHhhhhccccccCcccc
Q 022315 181 LDAALSEKEMSNFKKNCAHCHC 202 (299)
Q Consensus 181 ld~a~s~~~~~~~~r~C~~C~t 202 (299)
+++++..+-...+...|+.||+
T Consensus 21 ~~~~d~~~G~~lf~~~Ca~CH~ 42 (135)
T 1e29_A 21 LTARQFTNGQKIFVDTCTQCHL 42 (135)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHG
T ss_pred CCcccHHHHHHHHHhHHHHhcC
Confidence 3444444444556678999999
No 36
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.10 E-value=50 Score=25.44 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=24.1
Q ss_pred ccCccccccccC-cCCCCCCccccccccccccCC
Q 022315 196 NCAHCHCQNTSQ-LTSPNGPKSLCDGCISSYGKD 228 (299)
Q Consensus 196 ~C~~C~ttkTp~-R~GP~GPKSLCNACGiRyrk~ 228 (299)
.|.-|......- +.|..|+--.|..|+..|...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~ 36 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPT 36 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTT
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchh
Confidence 466676555443 778888999999999888654
No 37
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.96 E-value=13 Score=20.49 Aligned_cols=15 Identities=13% Similarity=0.472 Sum_probs=11.8
Q ss_pred cccccccccccCCcc
Q 022315 216 SLCDGCISSYGKDKD 230 (299)
Q Consensus 216 SLCNACGiRyrk~r~ 230 (299)
--|+.||.+|.....
T Consensus 8 ~~C~~C~k~f~~~~~ 22 (35)
T 2elx_A 8 YVCALCLKKFVSSIR 22 (35)
T ss_dssp EECSSSCCEESSHHH
T ss_pred eECCCCcchhCCHHH
Confidence 469999999987653
No 38
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=22.77 E-value=25 Score=25.30 Aligned_cols=14 Identities=43% Similarity=0.980 Sum_probs=10.4
Q ss_pred hccccccCcccccc
Q 022315 191 SNFKKNCAHCHCQN 204 (299)
Q Consensus 191 ~~~~r~C~~C~ttk 204 (299)
..+.+.|+.||...
T Consensus 17 ~lf~~~C~~CHg~~ 30 (112)
T 1ccr_A 17 KIFKTKCAQCHTVD 30 (112)
T ss_dssp HHHHHHTTTTCCCS
T ss_pred HHHHhhcHHhCCCC
Confidence 34556799999876
No 39
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=28.21 E-value=18 Score=18.93 Aligned_cols=16 Identities=19% Similarity=0.561 Sum_probs=12.0
Q ss_pred ccccccccccCCcccc
Q 022315 217 LCDGCISSYGKDKDLH 232 (299)
Q Consensus 217 LCNACGiRyrk~r~~~ 232 (299)
-|+-||..|.....+.
T Consensus 5 ~C~~C~k~f~~~~~l~ 20 (30)
T 2lvr_A 5 VCIHCQRQFADPGALQ 20 (30)
Confidence 5899999998765443
No 40
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=22.51 E-value=77 Score=24.73 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=16.0
Q ss_pred HhHHHHHHHHhHHHHHHHHHHH
Q 022315 267 KYSDELFATLGHMEQKLEELLN 288 (299)
Q Consensus 267 kysdel~~tlg~meq~le~lld 288 (299)
+.-+.|...|..|+++|.+|-.
T Consensus 31 ~~l~~L~~~l~~Lq~~l~~l~~ 52 (177)
T 1pwb_A 31 QQVEALQGQVQHLQAAFSQYKK 52 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3345577788888888888765
No 41
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=22.51 E-value=22 Score=25.79 Aligned_cols=13 Identities=46% Similarity=0.797 Sum_probs=10.0
Q ss_pred ccccccCcccccc
Q 022315 192 NFKKNCAHCHCQN 204 (299)
Q Consensus 192 ~~~r~C~~C~ttk 204 (299)
.+...|+.||...
T Consensus 20 lf~~~C~~CH~~~ 32 (114)
T 2w9k_A 20 LFKGRAAQCHTAN 32 (114)
T ss_dssp HHHHHTTTTCCCS
T ss_pred HHHhhchhhCCCC
Confidence 4555799999876
No 42
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.44 E-value=1.3e+02 Score=22.19 Aligned_cols=39 Identities=13% Similarity=0.247 Sum_probs=28.8
Q ss_pred hhhhccCchHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Q 022315 251 QFLLESDSSEVEETVKKYSDELFATLGHMEQKLEELLNT 289 (299)
Q Consensus 251 k~lle~d~s~vee~vkkysdel~~tlg~meq~le~lld~ 289 (299)
..|++.|-.+|.+.|++--+.+-..+..++.+++.+-..
T Consensus 61 ~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 61 TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347778888888888888888777777777777665443
No 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.31 E-value=29 Score=19.40 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=11.2
Q ss_pred cccccccccccCCc
Q 022315 216 SLCDGCISSYGKDK 229 (299)
Q Consensus 216 SLCNACGiRyrk~r 229 (299)
--|+.||.+|....
T Consensus 12 ~~C~~C~k~f~~~~ 25 (37)
T 1p7a_A 12 FQCPDCDRSFSRSD 25 (37)
T ss_dssp BCCTTTCCCBSSHH
T ss_pred ccCCCCCcccCcHH
Confidence 46999999998654
No 44
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=22.29 E-value=31 Score=31.11 Aligned_cols=41 Identities=32% Similarity=0.544 Sum_probs=31.7
Q ss_pred chhhhhccCchHHHH---HHHHhHHHHHHHHhHHHHHHHHHHHHHHhh
Q 022315 249 DLQFLLESDSSEVEE---TVKKYSDELFATLGHMEQKLEELLNTVVSR 293 (299)
Q Consensus 249 d~k~lle~d~s~vee---~vkkysdel~~tlg~meq~le~lld~v~~~ 293 (299)
|-..||.-|+..|++ .||+|- .++|-+-+..|+-||+.|..
T Consensus 42 dtDlLlkVD~~~V~kAG~kVK~YL----esiGI~G~sVEe~LD~LM~k 85 (224)
T 2jo7_A 42 DTDLLLKVDSTKVDEAGKKVKAYL----EKIGIRGDSVEAALDNLMIK 85 (224)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHHH----HHHHCCSCCHHHHHHHHHHH
T ss_pred ccchhhccCHHHHHHHHHHHHHHH----HHhcCCCchHHHHHHHHHHH
Confidence 445799999999985 688885 46777777788888888754
No 45
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=21.96 E-value=44 Score=24.35 Aligned_cols=10 Identities=40% Similarity=0.939 Sum_probs=8.8
Q ss_pred cccCcccccc
Q 022315 195 KNCAHCHCQN 204 (299)
Q Consensus 195 r~C~~C~ttk 204 (299)
+.|+.||+..
T Consensus 13 ~~C~~CH~~~ 22 (121)
T 1jdl_A 13 KKCMACHRVG 22 (121)
T ss_dssp GGTTTTCCCS
T ss_pred hhhhhhCCCC
Confidence 6899999876
No 46
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.55 E-value=42 Score=24.91 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=20.5
Q ss_pred ccccccCccccccccCcCCCCCCcccccccccc
Q 022315 192 NFKKNCAHCHCQNTSQLTSPNGPKSLCDGCISS 224 (299)
Q Consensus 192 ~~~r~C~~C~ttkTp~R~GP~GPKSLCNACGiR 224 (299)
...-.|.+|+...... .+..--|..||-|
T Consensus 26 ~v~Y~C~~CG~~~e~~----~~d~irCp~CG~R 54 (70)
T 1twf_L 26 TLKYICAECSSKLSLS----RTDAVRCKDCGHR 54 (70)
T ss_dssp CCCEECSSSCCEECCC----TTSTTCCSSSCCC
T ss_pred eEEEECCCCCCcceeC----CCCCccCCCCCce
Confidence 3556899999987554 2233479999984
No 47
>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A
Probab=21.52 E-value=24 Score=24.00 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=10.7
Q ss_pred cccccccccccCC
Q 022315 216 SLCDGCISSYGKD 228 (299)
Q Consensus 216 SLCNACGiRyrk~ 228 (299)
.-|.+|.|+|++-
T Consensus 9 ~~C~~C~IsF~~l 21 (36)
T 1fu9_A 9 KYCSTCDISFNYV 21 (36)
T ss_dssp SEETTTTEECSSH
T ss_pred Ceeccccceehhh
Confidence 4699999999863
No 48
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.50 E-value=27 Score=19.29 Aligned_cols=15 Identities=20% Similarity=0.660 Sum_probs=11.7
Q ss_pred cccccccccccCCcc
Q 022315 216 SLCDGCISSYGKDKD 230 (299)
Q Consensus 216 SLCNACGiRyrk~r~ 230 (299)
--|+.||.+|.....
T Consensus 8 ~~C~~C~k~f~~~~~ 22 (35)
T 1srk_A 8 FVCRICLSAFTTKAN 22 (35)
T ss_dssp EECSSSCCEESSHHH
T ss_pred eeCCCCCcccCCHHH
Confidence 359999999987653
No 49
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=21.32 E-value=30 Score=24.27 Aligned_cols=12 Identities=42% Similarity=1.085 Sum_probs=9.5
Q ss_pred cccccCcccccc
Q 022315 193 FKKNCAHCHCQN 204 (299)
Q Consensus 193 ~~r~C~~C~ttk 204 (299)
+.+.|+.||...
T Consensus 10 f~~~C~~CH~~~ 21 (103)
T 1i54_A 10 FVQKCAQCHTVE 21 (103)
T ss_dssp HHHHTTTTCCCS
T ss_pred HHHhhHHhCCCC
Confidence 455799999876
No 50
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.24 E-value=51 Score=23.81 Aligned_cols=28 Identities=21% Similarity=0.714 Sum_probs=19.3
Q ss_pred ccccCccccccccCcCCCCCCccccccccccccCCccc
Q 022315 194 KKNCAHCHCQNTSQLTSPNGPKSLCDGCISSYGKDKDL 231 (299)
Q Consensus 194 ~r~C~~C~ttkTp~R~GP~GPKSLCNACGiRyrk~r~~ 231 (299)
.-.|..|+..+- |-.+|..|| |-++|..
T Consensus 30 l~~c~~cG~~~~--------pH~vc~~CG--~Y~gr~v 57 (60)
T 2zjr_Z 30 LTECPQCHGKKL--------SHHICPNCG--YYDGRQV 57 (60)
T ss_dssp CEECTTTCCEEC--------TTBCCTTTC--BSSSBCS
T ss_pred ceECCCCCCEeC--------CceEcCCCC--cCCCEEe
Confidence 346888887763 566899999 5566643
No 51
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=20.98 E-value=47 Score=26.73 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=13.5
Q ss_pred hccccccCccccccccCcCCCCCCc
Q 022315 191 SNFKKNCAHCHCQNTSQLTSPNGPK 215 (299)
Q Consensus 191 ~~~~r~C~~C~ttkTp~R~GP~GPK 215 (299)
..+ +.|+.||+.. -.+..||.
T Consensus 49 ~lf-~~C~~CH~~~---~~~~~gP~ 69 (140)
T 3m97_X 49 KVF-GKCKACHKLD---GNDGVGPH 69 (140)
T ss_dssp HHG-GGTTTTCCSS---SCCSSSCC
T ss_pred HHH-HhhhhhcCCC---CCCCcCCC
Confidence 345 7999999883 23344554
No 52
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.86 E-value=26 Score=19.57 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=11.7
Q ss_pred cccccccccccCCcc
Q 022315 216 SLCDGCISSYGKDKD 230 (299)
Q Consensus 216 SLCNACGiRyrk~r~ 230 (299)
--|+.||.+|.....
T Consensus 10 ~~C~~C~k~f~~~~~ 24 (37)
T 2elo_A 10 YSCPVCEKSFSEDRL 24 (37)
T ss_dssp CEETTTTEECSSHHH
T ss_pred cCCCCCCCccCCHHH
Confidence 469999999987543
No 53
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.56 E-value=31 Score=19.38 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=10.8
Q ss_pred cccccccccccCC
Q 022315 216 SLCDGCISSYGKD 228 (299)
Q Consensus 216 SLCNACGiRyrk~ 228 (299)
--|+.||..|...
T Consensus 10 ~~C~~C~k~f~~~ 22 (37)
T 2elp_A 10 MKCPYCDFYFMKN 22 (37)
T ss_dssp EECSSSSCEECSS
T ss_pred eECCCCChhhccC
Confidence 4699999999875
No 54
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=20.49 E-value=37 Score=26.51 Aligned_cols=13 Identities=38% Similarity=0.989 Sum_probs=9.9
Q ss_pred ccccccCccccccc
Q 022315 192 NFKKNCAHCHCQNT 205 (299)
Q Consensus 192 ~~~r~C~~C~ttkT 205 (299)
.+.+ |+-||+...
T Consensus 11 lF~~-C~~CH~v~~ 23 (134)
T 2bh4_X 11 EFNK-CKACHMVQA 23 (134)
T ss_dssp HGGG-TTTTCCEEC
T ss_pred HHHH-hHhhcCCcC
Confidence 4555 999999874
No 55
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=20.47 E-value=1.3e+02 Score=19.71 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=18.6
Q ss_pred HHHHHhHHHHHHHHhHHHHHHHHH
Q 022315 263 ETVKKYSDELFATLGHMEQKLEEL 286 (299)
Q Consensus 263 e~vkkysdel~~tlg~meq~le~l 286 (299)
|.+.|-...|-..|..+|.+||.|
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677888899999999876
No 56
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.39 E-value=29 Score=17.89 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=10.7
Q ss_pred ccccccccccCCcc
Q 022315 217 LCDGCISSYGKDKD 230 (299)
Q Consensus 217 LCNACGiRyrk~r~ 230 (299)
.|+.||..|.....
T Consensus 5 ~C~~C~~~f~~~~~ 18 (30)
T 2m0d_A 5 QCDYCGRSFSDPTS 18 (30)
T ss_dssp ECTTTCCEESCHHH
T ss_pred cCCCCCcccCCHHH
Confidence 58999999876543
No 57
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.37 E-value=28 Score=17.82 Aligned_cols=13 Identities=15% Similarity=0.468 Sum_probs=9.9
Q ss_pred ccccccccccCCc
Q 022315 217 LCDGCISSYGKDK 229 (299)
Q Consensus 217 LCNACGiRyrk~r 229 (299)
-|.-||..|....
T Consensus 4 ~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 4 KCPHCDKKFNQVG 16 (29)
T ss_dssp CCSSCCCCCCTTT
T ss_pred cCCCCCcccCCHH
Confidence 4888998887654
Done!