BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022316
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 138/263 (52%), Gaps = 20/263 (7%)
Query: 21 KDNLIKTSHGSLSVTIYG--DQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCI 78
K + ++T +GS++ T+YG +PA++TY D+ LNY SCFQ LF E ++ NF
Sbjct: 2 KTHSVETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVR 60
Query: 79 YHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAM 138
H++ PG E GA S+D LAD I VL + ++ +GV AGAYIL +A+
Sbjct: 61 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYAL 120
Query: 139 KYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSK-EVRGN 197
+ V GL+L++ A W +W +K+ G+ + E++L FS+ E+ GN
Sbjct: 121 NHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN 173
Query: 198 AQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESS 253
S+++Q R ++ + N+ ++ + N R D++ G L+C ++ VG+ +
Sbjct: 174 -----SELIQKYRNIITHAPNLDNIENYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQA 228
Query: 254 PFHSEAVHMTSKIDRRYSALVEV 276
P V SK+D ++ +++
Sbjct: 229 PHEDAVVECNSKLDPTQTSFLKM 251
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 137/263 (52%), Gaps = 20/263 (7%)
Query: 21 KDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCI 78
K + ++T +GS++ T+YG +PA++TY D+ LNY SCFQ LF E ++ NF
Sbjct: 2 KTHSVETPYGSVTFTVYGTPAPARPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVR 60
Query: 79 YHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAM 138
H++ PG E GA S+D LAD I VL + ++ +GV AGAYIL +A+
Sbjct: 61 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYAL 120
Query: 139 KYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSK-EVRGN 197
+ V GL+L++ A W +W +K+ G+ + E++L FS+ E+ GN
Sbjct: 121 NHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN 173
Query: 198 AQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESS 253
S+++Q R ++ + N+ + + N R D++ G L+C ++ VG+ +
Sbjct: 174 -----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQA 228
Query: 254 PFHSEAVHMTSKIDRRYSALVEV 276
P V SK+D ++ +++
Sbjct: 229 PHEDAVVECNSKLDPTQTSFLKM 251
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 137/263 (52%), Gaps = 20/263 (7%)
Query: 21 KDNLIKTSHGSLSVTIYGDQD--KPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCI 78
K + ++T +GS++ T+YG +PA++TY D+ LNY SCFQ LF E ++ NF
Sbjct: 2 KTHSVETPYGSVTFTVYGTPYPYRPAILTYHDVGLNYKSCFQPLFQF-EDMQEIIQNFVR 60
Query: 79 YHINPPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAM 138
H++ PG E GA S+D LAD I VL + ++ +GV AGAYIL +A+
Sbjct: 61 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYAL 120
Query: 139 KYRHRVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSK-EVRGN 197
+ V GL+L++ A W +W +K+ G+ + E++L FS+ E+ GN
Sbjct: 121 NHPDTVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN 173
Query: 198 AQVPESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESS 253
S+++Q R ++ + N+ + + N R D++ G L+C ++ VG+ +
Sbjct: 174 -----SELIQKYRNIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQA 228
Query: 254 PFHSEAVHMTSKIDRRYSALVEV 276
P V SK+D ++ +++
Sbjct: 229 PHEDAVVECNSKLDPTQTSFLKM 251
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 120 bits (302), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 135/259 (52%), Gaps = 20/259 (7%)
Query: 25 IKTSHGSLSVTIYG--DQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHIN 82
++T +GS++ T+YG +PA+ TY D+ LNY SCFQ LF + ++ NF H++
Sbjct: 16 VETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEII-QNFVRVHVD 74
Query: 83 PPGHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRH 142
PG E GA S+D LAD I +L + ++ +GV AGAYIL+ +A+ +
Sbjct: 75 APGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPD 134
Query: 143 RVLGLILVSPLCKAPSWTEWLYNKVMSNLLYYYGMCGVVKELLLKRYFSK-EVRGNAQVP 201
V GL+L++ A W +W +K+ G+ + +++L FS+ E+ GN
Sbjct: 135 TVEGLVLINIDPNAKGWMDWAAHKLT-------GLTSSIPDMILGHLFSQEELSGN---- 183
Query: 202 ESDIVQACRRLLDERQS-SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHS 257
S+++Q R ++ + N+ + + N R D++ G L+C ++ VG+ +P
Sbjct: 184 -SELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED 242
Query: 258 EAVHMTSKIDRRYSALVEV 276
V SK+D ++ +++
Sbjct: 243 AVVECNSKLDPTQTSFLKM 261
>pdb|2A2J|A Chain A, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
pdb|2A2J|B Chain B, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
Length = 246
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 31 SLSVTIYGDQDKPALVTYPDLALNYMSCFQGLFFCPEACSLLLHNFCIYHINPPGHEFGA 90
L+VT Y A T+P L + QG P + F + + P G + GA
Sbjct: 121 QLAVTPY------ASATFPWYQLGRQAHVQG----PVSKVSTEEIFTYWSMRPRGAQLGA 170
Query: 91 AAISDDEPVLSVDDLADQIAEVLNHF 116
A PV S L +Q+AEV F
Sbjct: 171 WASQQSRPVGSRAQLDNQLAEVTRRF 196
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 101 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPL 153
S+D AD A +L+ G+ +G A +L F KY RV+ + P+
Sbjct: 81 SLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 133
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 57 SCFQGLFFCPEACS---LLLH-------NFCIYHINPPGHEFGAAAISDDEPVL-SVDDL 105
SCF+ PEACS +++H YH + GH FGA A DE L S +L
Sbjct: 72 SCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGEL 131
Query: 106 ADQIAEVLNHFGLGAVMCMGVTAGA 130
Q V + G + V G+
Sbjct: 132 ELQFRRVKCKYPEGTKVTFHVEKGS 156
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 101 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPL 153
S LA +L G+ +G + G + T +A+ Y +V L+LV+P+
Sbjct: 96 SFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPI 148
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 87 EFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 144
+FG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 145 LGLILVSPLCKAP 157
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 87 EFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 144
+FG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 145 LGLILVSPLCKAP 157
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 87 EFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 144
+FG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 145 LGLILVSPLCKAP 157
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 87 EFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 144
+FG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 145 LGLILVSPLCKAP 157
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 87 EFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 144
+FG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 145 LGLILVSPLCKAP 157
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 85 GHEFGAAAISDDEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRV 144
GHE A I+ D + D+ Q N +G GA G GA + A R RV
Sbjct: 509 GHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERV 568
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 87 EFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 144
+FG + + D + AE L FG V MG G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHL 122
Query: 145 LGLILVSPLCKAP 157
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,033,123
Number of Sequences: 62578
Number of extensions: 363572
Number of successful extensions: 786
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 18
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)