Query 022317
Match_columns 299
No_of_seqs 154 out of 1802
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 02:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 3E-32 6.5E-37 242.8 25.2 260 2-263 74-335 (358)
2 TIGR00950 2A78 Carboxylate/Ami 100.0 3.8E-27 8.2E-32 203.2 22.5 218 2-252 42-260 (260)
3 TIGR00817 tpt Tpt phosphate/ph 100.0 9.6E-28 2.1E-32 211.3 19.0 230 1-261 60-298 (302)
4 PRK11453 O-acetylserine/cystei 100.0 8.3E-27 1.8E-31 204.9 22.0 228 6-259 58-290 (299)
5 PRK11272 putative DMT superfam 100.0 9.2E-27 2E-31 204.0 21.7 224 2-259 64-288 (292)
6 PF06027 DUF914: Eukaryotic pr 99.9 1.9E-25 4.1E-30 195.4 24.0 235 3-261 76-310 (334)
7 PRK11689 aromatic amino acid e 99.9 7.6E-26 1.6E-30 198.4 19.1 227 6-259 60-290 (295)
8 PRK10532 threonine and homoser 99.9 1.1E-24 2.4E-29 190.9 22.2 219 2-260 67-285 (293)
9 TIGR03340 phn_DUF6 phosphonate 99.9 1.9E-24 4E-29 188.4 21.7 218 4-253 60-280 (281)
10 PRK15430 putative chlorampheni 99.9 9.6E-25 2.1E-29 191.5 19.3 209 10-257 76-286 (296)
11 PTZ00343 triose or hexose phos 99.9 7.4E-24 1.6E-28 189.6 19.7 224 3-257 111-349 (350)
12 COG0697 RhaT Permeases of the 99.9 1.4E-20 3.1E-25 164.3 21.6 218 6-257 69-288 (292)
13 COG5006 rhtA Threonine/homoser 99.9 5.8E-20 1.2E-24 149.9 18.3 219 1-258 66-284 (292)
14 PF08449 UAA: UAA transporter 99.8 1.8E-19 4E-24 158.6 21.1 238 3-261 61-302 (303)
15 KOG4510 Permease of the drug/m 99.8 1.4E-22 3.1E-27 166.1 -0.3 231 5-258 96-327 (346)
16 KOG2765 Predicted membrane pro 99.8 2.1E-19 4.5E-24 154.3 17.0 236 5-261 157-395 (416)
17 TIGR00688 rarD rarD protein. T 99.8 3.9E-19 8.5E-24 152.9 18.8 184 8-231 72-255 (256)
18 COG2962 RarD Predicted permeas 99.8 1.7E-18 3.8E-23 144.9 19.1 219 2-259 68-286 (293)
19 TIGR00776 RhaT RhaT L-rhamnose 99.8 3.5E-17 7.6E-22 142.9 18.2 207 17-256 69-288 (290)
20 PF04142 Nuc_sug_transp: Nucle 99.7 3.7E-16 8.1E-21 132.4 19.1 231 2-247 13-244 (244)
21 KOG1441 Glucose-6-phosphate/ph 99.7 1.2E-17 2.6E-22 144.6 7.1 230 3-263 80-314 (316)
22 KOG2234 Predicted UDP-galactos 99.7 4.6E-14 1E-18 121.7 21.8 239 2-261 88-327 (345)
23 KOG1443 Predicted integral mem 99.6 4.9E-15 1.1E-19 124.4 14.3 223 2-254 79-313 (349)
24 COG2510 Predicted membrane pro 99.6 2.4E-14 5.2E-19 105.1 14.0 136 117-256 4-139 (140)
25 KOG1580 UDP-galactose transpor 99.6 3.8E-14 8.3E-19 114.8 14.9 228 8-259 87-316 (337)
26 KOG2766 Predicted membrane pro 99.6 1.3E-15 2.8E-20 124.7 5.5 224 5-257 77-300 (336)
27 KOG1444 Nucleotide-sugar trans 99.5 1.1E-12 2.4E-17 111.6 17.5 233 1-264 72-308 (314)
28 KOG1581 UDP-galactose transpor 99.5 2.3E-13 5E-18 114.4 12.4 235 3-260 80-317 (327)
29 PF00892 EamA: EamA-like trans 99.5 6.9E-14 1.5E-18 106.5 7.4 125 126-255 1-125 (126)
30 PF03151 TPT: Triose-phosphate 99.4 1.8E-11 4E-16 96.7 13.0 139 117-256 1-153 (153)
31 COG5070 VRG4 Nucleotide-sugar 99.3 3.8E-12 8.3E-17 102.5 6.8 238 4-265 66-305 (309)
32 KOG1583 UDP-N-acetylglucosamin 99.3 5.5E-11 1.2E-15 98.9 13.6 225 19-258 76-316 (330)
33 KOG3912 Predicted integral mem 99.3 3.3E-11 7.2E-16 100.3 11.1 226 10-255 90-333 (372)
34 PRK15430 putative chlorampheni 99.2 9.3E-11 2E-15 103.0 12.5 138 113-255 5-144 (296)
35 TIGR00688 rarD rarD protein. T 99.2 1.5E-10 3.2E-15 99.6 12.1 137 116-255 2-141 (256)
36 KOG1442 GDP-fucose transporter 99.2 3.6E-12 7.9E-17 105.6 1.3 211 23-261 118-332 (347)
37 KOG4314 Predicted carbohydrate 99.2 2.4E-10 5.2E-15 90.6 11.3 212 18-257 64-277 (290)
38 TIGR03340 phn_DUF6 phosphonate 99.2 5.3E-10 1.2E-14 97.5 13.4 133 118-256 3-135 (281)
39 KOG1582 UDP-galactose transpor 99.1 3.9E-10 8.5E-15 93.6 9.8 228 6-261 106-337 (367)
40 PF06800 Sugar_transport: Suga 99.1 9.9E-09 2.2E-13 87.1 17.8 218 4-253 43-268 (269)
41 PLN00411 nodulin MtN21 family 99.1 2.2E-09 4.7E-14 96.3 13.2 141 114-257 11-157 (358)
42 PF05653 Mg_trans_NIPA: Magnes 99.0 7.5E-09 1.6E-13 90.5 14.4 234 8-259 51-295 (300)
43 TIGR00803 nst UDP-galactose tr 99.0 1.6E-09 3.5E-14 91.1 9.6 213 32-254 3-222 (222)
44 PF13536 EmrE: Multidrug resis 99.0 1.3E-09 2.9E-14 81.5 7.5 77 4-87 32-108 (113)
45 PRK02971 4-amino-4-deoxy-L-ara 99.0 9.6E-09 2.1E-13 78.2 12.0 122 116-259 2-125 (129)
46 TIGR00950 2A78 Carboxylate/Ami 99.0 8.1E-09 1.8E-13 88.8 11.7 119 128-256 1-119 (260)
47 PRK11272 putative DMT superfam 98.9 1.8E-08 3.9E-13 88.3 13.0 131 118-256 10-141 (292)
48 PF13536 EmrE: Multidrug resis 98.9 5.2E-09 1.1E-13 78.4 7.6 107 151-259 3-109 (113)
49 PRK13499 rhamnose-proton sympo 98.9 8.4E-07 1.8E-11 78.4 21.6 242 2-258 69-343 (345)
50 COG2510 Predicted membrane pro 98.9 8.2E-10 1.8E-14 81.4 2.3 76 2-84 63-138 (140)
51 PRK11689 aromatic amino acid e 98.9 5.2E-08 1.1E-12 85.5 13.7 131 116-257 4-138 (295)
52 PF00892 EamA: EamA-like trans 98.8 6.5E-09 1.4E-13 78.8 6.1 77 2-84 49-125 (126)
53 COG2962 RarD Predicted permeas 98.8 3.3E-08 7.1E-13 83.6 10.5 139 114-256 5-144 (293)
54 PRK11453 O-acetylserine/cystei 98.8 7.2E-08 1.6E-12 84.8 13.3 126 118-256 6-132 (299)
55 PTZ00343 triose or hexose phos 98.8 1.4E-07 3E-12 84.8 14.3 135 119-256 52-186 (350)
56 TIGR00817 tpt Tpt phosphate/ph 98.8 1E-07 2.2E-12 84.0 11.8 122 129-255 15-136 (302)
57 PRK15051 4-amino-4-deoxy-L-ara 98.7 1.3E-07 2.8E-12 70.3 8.3 67 189-255 42-108 (111)
58 PRK15051 4-amino-4-deoxy-L-ara 98.6 3.8E-07 8.2E-12 67.8 8.7 68 11-84 41-108 (111)
59 COG0697 RhaT Permeases of the 98.5 2.1E-06 4.5E-11 74.7 13.8 141 114-259 5-146 (292)
60 TIGR00776 RhaT RhaT L-rhamnose 98.4 2.9E-06 6.2E-11 74.3 11.9 131 117-257 2-137 (290)
61 KOG2922 Uncharacterized conser 98.4 1.9E-06 4.1E-11 73.9 8.3 224 8-261 65-311 (335)
62 PF06027 DUF914: Eukaryotic pr 98.3 2.8E-05 6.1E-10 68.8 14.7 143 114-259 11-154 (334)
63 KOG4510 Permease of the drug/m 98.3 6.7E-07 1.5E-11 74.5 4.0 137 113-258 35-171 (346)
64 PRK10532 threonine and homoser 98.2 5.2E-06 1.1E-10 72.8 9.0 78 3-86 205-282 (293)
65 PRK10452 multidrug efflux syst 98.2 2.4E-05 5.2E-10 58.5 9.8 68 191-258 37-105 (120)
66 PF08449 UAA: UAA transporter 98.1 5.5E-05 1.2E-09 66.7 13.1 129 127-262 11-142 (303)
67 PRK02971 4-amino-4-deoxy-L-ara 98.1 1.8E-05 3.9E-10 60.3 8.0 70 9-84 50-121 (129)
68 PF04657 DUF606: Protein of un 98.0 9.3E-05 2E-09 57.2 11.3 132 117-253 2-138 (138)
69 PF05653 Mg_trans_NIPA: Magnes 97.9 2.1E-05 4.7E-10 68.9 6.6 120 113-257 4-123 (300)
70 COG4975 GlcU Putative glucose 97.9 1.3E-06 2.9E-11 71.9 -0.9 224 2-257 55-286 (288)
71 PRK09541 emrE multidrug efflux 97.8 6.8E-05 1.5E-09 55.4 6.7 65 193-257 39-104 (110)
72 PRK13499 rhamnose-proton sympo 97.7 0.00019 4.1E-09 63.6 9.2 143 113-261 4-158 (345)
73 PF07857 DUF1632: CEO family ( 97.7 6.1E-05 1.3E-09 63.9 5.6 132 117-261 1-139 (254)
74 PRK11431 multidrug efflux syst 97.7 0.00046 9.9E-09 50.5 8.8 64 193-256 38-102 (105)
75 PRK10452 multidrug efflux syst 97.6 0.00032 6.8E-09 52.6 7.4 69 11-85 34-103 (120)
76 PRK10650 multidrug efflux syst 97.6 0.00077 1.7E-08 49.6 9.2 63 193-255 44-107 (109)
77 PF06379 RhaT: L-rhamnose-prot 97.6 0.0077 1.7E-07 52.8 16.5 241 3-257 70-341 (344)
78 PRK09541 emrE multidrug efflux 97.6 0.00056 1.2E-08 50.5 7.9 68 12-85 35-103 (110)
79 COG3238 Uncharacterized protei 97.5 0.0011 2.4E-08 51.3 9.7 139 115-257 4-147 (150)
80 PF04142 Nuc_sug_transp: Nucle 97.5 0.00041 8.9E-09 59.0 7.7 79 182-261 16-94 (244)
81 COG2076 EmrE Membrane transpor 97.5 0.00026 5.7E-09 51.3 5.4 64 194-257 40-104 (106)
82 PRK10650 multidrug efflux syst 97.5 0.00069 1.5E-08 49.8 7.6 65 14-84 42-107 (109)
83 COG2076 EmrE Membrane transpor 97.4 0.00092 2E-08 48.5 7.7 68 11-84 34-102 (106)
84 PF03151 TPT: Triose-phosphate 97.4 0.0007 1.5E-08 53.1 7.8 72 4-82 79-150 (153)
85 PF00893 Multi_Drug_Res: Small 97.4 0.00094 2E-08 47.9 7.6 55 193-247 38-93 (93)
86 PF06800 Sugar_transport: Suga 97.4 0.0038 8.2E-08 53.4 12.1 81 181-262 43-128 (269)
87 PRK11431 multidrug efflux syst 97.4 0.0014 3.1E-08 47.9 8.2 65 14-84 36-101 (105)
88 PF00893 Multi_Drug_Res: Small 96.8 0.0056 1.2E-07 43.8 6.8 57 13-75 35-92 (93)
89 KOG2234 Predicted UDP-galactos 96.8 0.081 1.8E-06 46.6 14.7 141 116-257 15-165 (345)
90 COG5006 rhtA Threonine/homoser 96.7 0.0066 1.4E-07 50.8 7.2 77 2-84 205-281 (292)
91 PF10639 UPF0546: Uncharacteri 96.6 0.013 2.7E-07 43.3 7.2 109 123-254 3-112 (113)
92 COG4975 GlcU Putative glucose 96.6 0.0014 3E-08 54.5 2.2 134 117-261 3-141 (288)
93 KOG2765 Predicted membrane pro 96.5 0.0066 1.4E-07 53.6 5.9 67 195-261 170-236 (416)
94 PF10639 UPF0546: Uncharacteri 96.5 0.0053 1.1E-07 45.3 4.5 65 13-83 47-112 (113)
95 KOG1441 Glucose-6-phosphate/ph 96.4 0.0019 4E-08 56.8 2.4 123 130-256 31-155 (316)
96 KOG2922 Uncharacterized conser 95.9 0.007 1.5E-07 52.4 3.3 125 111-260 16-140 (335)
97 PF06379 RhaT: L-rhamnose-prot 95.9 0.033 7.1E-07 49.0 7.3 147 113-263 4-160 (344)
98 KOG1444 Nucleotide-sugar trans 95.5 0.21 4.6E-06 43.5 10.8 134 118-256 14-149 (314)
99 KOG4314 Predicted carbohydrate 95.4 0.01 2.2E-07 47.8 2.3 63 196-258 65-127 (290)
100 KOG1443 Predicted integral mem 95.4 0.29 6.3E-06 42.4 11.1 127 133-259 33-159 (349)
101 TIGR00803 nst UDP-galactose tr 93.8 0.058 1.2E-06 45.2 3.2 64 12-82 158-221 (222)
102 KOG1581 UDP-galactose transpor 93.8 1.4 3E-05 38.3 11.4 139 116-261 14-160 (327)
103 KOG1580 UDP-galactose transpor 92.0 0.19 4.1E-06 41.8 3.6 74 4-84 239-312 (337)
104 PF07168 Ureide_permease: Urei 91.8 0.12 2.6E-06 44.6 2.4 132 122-256 2-146 (336)
105 PF04657 DUF606: Protein of un 91.2 0.79 1.7E-05 35.3 6.2 69 7-82 65-138 (138)
106 KOG3912 Predicted integral mem 90.5 0.61 1.3E-05 40.0 5.2 63 195-257 97-159 (372)
107 PRK02237 hypothetical protein; 89.5 1.4 3E-05 32.1 5.7 46 213-258 62-107 (109)
108 PF07857 DUF1632: CEO family ( 88.9 5.3 0.00012 34.1 9.9 130 10-141 59-208 (254)
109 PF05297 Herpes_LMP1: Herpesvi 88.8 0.13 2.7E-06 43.9 0.0 49 27-81 43-93 (381)
110 PF02694 UPF0060: Uncharacteri 88.6 1.5 3.3E-05 31.8 5.3 46 214-259 61-106 (107)
111 KOG1442 GDP-fucose transporter 85.8 1.7 3.6E-05 37.3 4.9 112 141-256 57-174 (347)
112 KOG4831 Unnamed protein [Funct 84.2 1.8 4E-05 31.2 3.9 70 8-84 54-124 (125)
113 PF03547 Mem_trans: Membrane t 83.1 28 0.0006 31.6 12.3 18 183-200 62-79 (385)
114 PF04342 DUF486: Protein of un 82.6 1.9 4.2E-05 31.1 3.5 31 225-255 77-107 (108)
115 COG1742 Uncharacterized conser 82.1 5.6 0.00012 28.7 5.6 47 213-259 61-107 (109)
116 KOG2766 Predicted membrane pro 81.8 0.35 7.7E-06 40.8 -0.6 135 114-257 16-151 (336)
117 PF05977 MFS_3: Transmembrane 80.6 45 0.00097 31.9 13.0 16 215-230 351-366 (524)
118 COG3169 Uncharacterized protei 79.7 4.2 9.1E-05 28.9 4.3 32 225-256 84-115 (116)
119 KOG1582 UDP-galactose transpor 75.2 16 0.00035 31.5 7.3 78 3-87 257-334 (367)
120 KOG4831 Unnamed protein [Funct 73.8 14 0.00029 26.9 5.5 59 197-255 65-124 (125)
121 COG5070 VRG4 Nucleotide-sugar 73.7 20 0.00043 30.0 7.2 106 146-259 38-143 (309)
122 PRK02237 hypothetical protein; 71.8 34 0.00074 25.0 7.3 51 28-84 52-104 (109)
123 PRK06638 NADH:ubiquinone oxido 69.3 62 0.0014 26.5 13.1 33 225-257 133-167 (198)
124 PF05297 Herpes_LMP1: Herpesvi 66.3 1.8 3.8E-05 37.2 -0.2 64 195-258 119-186 (381)
125 TIGR02865 spore_II_E stage II 65.2 1.6E+02 0.0035 29.7 16.8 44 34-83 11-54 (764)
126 PRK12650 putative monovalent c 64.5 1.8E+02 0.004 30.2 21.3 38 3-42 619-656 (962)
127 PF08507 COPI_assoc: COPI asso 63.9 13 0.00029 28.4 4.3 18 238-255 87-104 (136)
128 KOG1583 UDP-N-acetylglucosamin 62.4 19 0.00041 31.2 5.1 69 196-264 76-145 (330)
129 COG3238 Uncharacterized protei 60.0 36 0.00077 26.6 5.9 71 6-83 69-144 (150)
130 PF06570 DUF1129: Protein of u 59.5 99 0.0021 25.4 11.3 23 116-138 179-201 (206)
131 PRK15432 autoinducer 2 ABC tra 59.1 40 0.00087 30.3 7.1 23 237-259 287-309 (344)
132 PF06609 TRI12: Fungal trichot 58.1 1.9E+02 0.0041 28.3 12.8 16 70-85 241-256 (599)
133 PF05961 Chordopox_A13L: Chord 57.8 5.8 0.00013 26.0 1.1 23 240-262 6-28 (68)
134 PF02694 UPF0060: Uncharacteri 56.1 49 0.0011 24.1 5.7 51 28-84 51-102 (107)
135 PF15102 TMEM154: TMEM154 prot 53.5 26 0.00056 27.1 4.1 19 243-261 68-86 (146)
136 PF06570 DUF1129: Protein of u 52.7 1.3E+02 0.0028 24.7 11.0 16 117-132 112-127 (206)
137 COG3169 Uncharacterized protei 50.3 28 0.0006 24.9 3.5 33 45-83 81-113 (116)
138 PF04342 DUF486: Protein of un 49.4 13 0.00027 27.0 1.8 61 16-82 39-105 (108)
139 PF03595 SLAC1: Voltage-depend 45.3 2.2E+02 0.0047 25.1 12.5 42 70-130 7-48 (330)
140 PRK13108 prolipoprotein diacyl 44.4 2.8E+02 0.006 26.1 19.5 23 236-258 254-276 (460)
141 PF09656 PGPGW: Putative trans 42.6 85 0.0019 19.7 5.4 45 69-141 5-49 (53)
142 PHA03049 IMV membrane protein; 42.4 24 0.00052 23.1 2.1 22 240-261 6-27 (68)
143 PF10754 DUF2569: Protein of u 41.0 1.7E+02 0.0037 22.7 8.4 30 111-140 116-145 (149)
144 COG3086 RseC Positive regulato 37.1 6.6 0.00014 30.2 -1.2 23 209-231 73-95 (150)
145 COG3086 RseC Positive regulato 35.8 96 0.0021 24.0 4.8 35 28-63 69-103 (150)
146 COG4858 Uncharacterized membra 35.4 2.5E+02 0.0053 22.9 11.5 23 116-138 194-216 (226)
147 PF06123 CreD: Inner membrane 34.8 3.8E+02 0.0083 25.0 11.9 126 116-257 300-425 (430)
148 PF08693 SKG6: Transmembrane a 34.2 35 0.00077 20.1 1.8 18 242-259 21-38 (40)
149 PRK10263 DNA translocase FtsK; 33.6 6.5E+02 0.014 27.3 14.7 15 69-83 24-38 (1355)
150 PF10225 DUF2215: Uncharacteri 33.4 2.4E+02 0.0051 24.1 7.5 43 203-245 114-156 (249)
151 PRK12437 prolipoprotein diacyl 32.9 29 0.00064 30.0 1.9 23 236-258 235-257 (269)
152 PRK10862 SoxR reducing system 32.9 85 0.0018 24.6 4.3 45 29-80 70-114 (154)
153 COG1742 Uncharacterized conser 32.8 1.2E+02 0.0026 22.0 4.6 38 42-85 67-104 (109)
154 TIGR01167 LPXTG_anchor LPXTG-m 32.3 61 0.0013 17.7 2.6 20 236-255 10-29 (34)
155 PF11381 DUF3185: Protein of u 32.0 39 0.00084 21.8 1.9 18 69-86 1-18 (59)
156 PF15345 TMEM51: Transmembrane 31.1 27 0.00058 29.2 1.3 22 242-263 67-88 (233)
157 PF02487 CLN3: CLN3 protein; 31.0 4.3E+02 0.0093 24.4 11.1 72 7-84 3-107 (402)
158 PF11295 DUF3096: Protein of u 31.0 74 0.0016 18.5 2.7 33 221-253 1-33 (39)
159 PF15471 TMEM171: Transmembran 30.8 68 0.0015 27.5 3.6 25 238-262 161-185 (319)
160 COG2246 Predicted membrane pro 30.0 2.5E+02 0.0055 21.5 10.3 58 3-64 10-69 (139)
161 PF06679 DUF1180: Protein of u 29.8 70 0.0015 25.4 3.3 9 288-296 149-157 (163)
162 PF06781 UPF0233: Uncharacteri 29.7 95 0.002 21.8 3.6 58 179-256 28-85 (87)
163 TIGR00905 2A0302 transporter, 29.2 4.8E+02 0.01 24.4 15.8 44 217-260 395-438 (473)
164 PF11361 DUF3159: Protein of u 28.8 2.2E+02 0.0048 23.1 6.2 72 35-134 28-99 (187)
165 PF14851 FAM176: FAM176 family 28.5 1.8E+02 0.0038 22.9 5.3 10 208-217 17-26 (153)
166 PF13994 PgaD: PgaD-like prote 28.5 74 0.0016 24.3 3.3 22 239-260 64-85 (138)
167 PF07444 Ycf66_N: Ycf66 protei 27.0 33 0.00071 23.9 1.0 27 235-261 4-30 (84)
168 PF06166 DUF979: Protein of un 26.8 2.5E+02 0.0055 24.7 6.4 34 44-84 32-66 (308)
169 KOG1623 Multitransmembrane pro 26.2 1.9E+02 0.0042 24.6 5.6 31 112-142 124-154 (243)
170 PF13440 Polysacc_synt_3: Poly 26.2 3.6E+02 0.0078 22.0 9.1 35 194-228 104-138 (251)
171 PF01102 Glycophorin_A: Glycop 26.1 35 0.00075 25.7 1.0 16 242-257 75-90 (122)
172 PF06946 Phage_holin_5: Phage 26.0 2.5E+02 0.0054 20.0 5.9 56 202-257 22-81 (93)
173 PF04246 RseC_MucC: Positive r 25.9 98 0.0021 23.4 3.6 44 31-81 65-108 (135)
174 TIGR01299 synapt_SV2 synaptic 25.8 7E+02 0.015 25.2 18.2 15 2-16 162-176 (742)
175 CHL00196 psbY photosystem II p 25.7 1E+02 0.0022 17.6 2.6 20 115-134 5-24 (36)
176 PF08802 CytB6-F_Fe-S: Cytochr 25.6 1.2E+02 0.0025 17.8 2.9 26 2-27 7-32 (39)
177 PF15345 TMEM51: Transmembrane 25.6 1.5E+02 0.0033 24.9 4.7 17 70-86 11-27 (233)
178 PF15048 OSTbeta: Organic solu 25.5 37 0.0008 25.4 1.0 24 232-255 28-55 (125)
179 PF04156 IncA: IncA protein; 25.2 1.3E+02 0.0029 24.1 4.5 16 70-85 13-28 (191)
180 PF07960 CBP4: CBP4; InterPro 24.9 35 0.00076 25.8 0.8 41 2-46 4-44 (128)
181 cd08764 Cyt_b561_CG1275_like N 24.9 4.1E+02 0.0089 22.1 11.6 19 239-257 176-194 (214)
182 COG2271 UhpC Sugar phosphate p 24.6 4.6E+02 0.01 24.5 8.0 49 214-263 163-212 (448)
183 PRK11357 frlA putative fructos 23.7 5.8E+02 0.013 23.5 15.8 43 217-260 390-437 (445)
184 TIGR03810 arg_ornith_anti argi 22.9 6.2E+02 0.013 23.6 16.2 22 238-259 411-432 (468)
185 KOG1330 Sugar transporter/spin 22.0 6.9E+02 0.015 23.7 9.3 56 110-165 282-339 (493)
186 PF07123 PsbW: Photosystem II 21.8 72 0.0016 24.4 2.0 29 111-139 101-129 (138)
187 PRK09584 tppB putative tripept 21.6 6.9E+02 0.015 23.5 12.4 20 201-220 404-423 (500)
188 PF04246 RseC_MucC: Positive r 21.0 23 0.00049 27.0 -0.8 19 213-231 70-88 (135)
189 PRK02251 putative septation in 21.0 3.1E+02 0.0067 19.3 5.4 19 238-256 67-85 (87)
190 PF11044 TMEMspv1-c74-12: Plec 20.8 22 0.00049 21.2 -0.7 7 249-255 21-27 (49)
191 COG2917 Intracellular septatio 20.7 4.5E+02 0.0098 21.1 7.9 92 19-137 8-99 (180)
192 COG4854 Predicted membrane pro 20.6 2.5E+02 0.0055 20.7 4.5 51 69-142 74-124 (126)
193 COG4657 RnfA Predicted NADH:ub 20.3 4.5E+02 0.0097 20.9 7.8 25 112-136 99-123 (193)
194 PF00689 Cation_ATPase_C: Cati 20.0 4.3E+02 0.0094 20.6 9.0 29 1-29 46-74 (182)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=3e-32 Score=242.82 Aligned_cols=260 Identities=32% Similarity=0.590 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
+++++.++.+.|+++ ..++.+++.|++|++++.++++.++.|+++++++++++.|+++.+++.+++|++|++++++|+.
T Consensus 74 ~~~~~~~l~l~g~~g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ 152 (358)
T PLN00411 74 SVSILSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGAL 152 (358)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHH
Confidence 367778899999998 7888899999999999999999999999999999999644444444444446999999999999
Q ss_pred hhhhccCCccchhh-ccCCCcCCCCC-CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 022317 82 VMTLIKGPILELFW-TKGAENHGHGS-SGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVE 159 (299)
Q Consensus 82 ~i~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~ 159 (299)
++...++......+ +..-+..+... ..........|++++++++++|++|.+++|+..++++++...+.++..++.+.
T Consensus 153 ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~ 232 (358)
T PLN00411 153 VVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIV 232 (358)
T ss_pred HHHHccCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHH
Confidence 88754442210000 00000000000 01112234679999999999999999999999999877667777777777776
Q ss_pred HHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhh
Q 022317 160 GTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG 239 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~ 239 (299)
..+.....+..+...|....+...+.+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.
T Consensus 233 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~ 311 (358)
T PLN00411 233 TSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG 311 (358)
T ss_pred HHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH
Confidence 666666554322333333233345567788876 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhheeeccccCCC
Q 022317 240 RIIGAIIIIGGLYLVVWGKSKDHK 263 (299)
Q Consensus 240 ~~~G~~lii~G~~l~~~~~~~~~~ 263 (299)
+++|+++++.|+.+..+.++|+.+
T Consensus 312 ~~iG~~LIl~Gv~l~~~~~~~~~~ 335 (358)
T PLN00411 312 CLIGGILITLGFYAVMWGKANEEK 335 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Confidence 999999999999999876655543
No 2
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=3.8e-27 Score=203.17 Aligned_cols=218 Identities=21% Similarity=0.292 Sum_probs=187.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
+++++.++...|.++..+++.+++.|++|+++++++++.++.|+++++++++++|||+++++ ++|++++++|++
T Consensus 42 ~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~ 115 (260)
T TIGR00950 42 PLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAV 115 (260)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHH
Confidence 56788899999999889999999999999999999999999999999999999999999997 999999999998
Q ss_pred hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHH
Q 022317 82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEG 160 (299)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~ 160 (299)
++. ..+ .......|++++++++++|+.+.+..||..++.+ ++.....+++.++.+++
T Consensus 116 li~-~~~---------------------~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l 173 (260)
T TIGR00950 116 LLL-SDG---------------------NLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLL 173 (260)
T ss_pred hhc-cCC---------------------cccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHH
Confidence 876 221 1123467999999999999999999999887764 23455557788888888
Q ss_pred HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317 161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~ 240 (299)
.+.....+. . ..+ +...|..+++.+++++.+++.+|++++++.++.+++.+.+++|++++++++++++|++++.+
T Consensus 174 ~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~ 248 (260)
T TIGR00950 174 LPFAWFLGP-N-PQA---LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ 248 (260)
T ss_pred HHHHHhcCC-C-CCc---chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 887765432 1 111 33567778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 022317 241 IIGAIIIIGGLY 252 (299)
Q Consensus 241 ~~G~~lii~G~~ 252 (299)
++|+.+++.|+.
T Consensus 249 ~~G~~li~~g~~ 260 (260)
T TIGR00950 249 LIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHhcC
Confidence 999999999863
No 3
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.96 E-value=9.6e-28 Score=211.30 Aligned_cols=230 Identities=13% Similarity=0.152 Sum_probs=185.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317 1 MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA 80 (299)
Q Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv 80 (299)
++++++++++..|+++ +.++.+.++|++|++++.++++.++.|+++++++++++|||+++++ +.|++++++|+
T Consensus 60 ~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv 132 (302)
T TIGR00817 60 ISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGV 132 (302)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHH
Confidence 3678999999999997 9999999999999999999999999999999999999999999997 99999999999
Q ss_pred hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHH
Q 022317 81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK--AYPAELSLTAWICFFGTV 158 (299)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~v 158 (299)
.+.. .+ .......|++++++++++|++|.++.||..+ +. ++...+.+++..+.+
T Consensus 133 ~l~~--~~---------------------~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~ 188 (302)
T TIGR00817 133 ALAS--DT---------------------ELSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLF 188 (302)
T ss_pred hhhc--CC---------------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHH
Confidence 7653 11 1122356999999999999999999999887 55 468999999999999
Q ss_pred HHHHHHHHHhccccc--ceee-----cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHH
Q 022317 159 EGTLAALIMERGKAS--IWAI-----HWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII 231 (299)
Q Consensus 159 ~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~ 231 (299)
.+.|.....+..+.. .+.. .....+...++.++.+....+.++++++++.+|+++++...++|++++++++++
T Consensus 189 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~ 268 (302)
T TIGR00817 189 LLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILF 268 (302)
T ss_pred HHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhh
Confidence 999988765531110 0000 000112112233332333334566789999999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHhhhhheeeccccC
Q 022317 232 LAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 232 ~~e~~t~~~~~G~~lii~G~~l~~~~~~~~ 261 (299)
+||++++.+++|+++++.|+.++.+.|+++
T Consensus 269 lge~lt~~~~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 269 FGTKISPQQVFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999998765443
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.95 E-value=8.3e-27 Score=204.92 Aligned_cols=228 Identities=21% Similarity=0.287 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 6 LTKLLLLGLLEPVIDQNLYFIGMKY-TTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
+..+...|++....++.+++.+++| .+++.++++.++.|+++.+++++++|||+++++ +++++++++|+.++.
T Consensus 58 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 58 LNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLI 131 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhc
Confidence 3345555666545667788889998 588999999999999999999999999999998 999999999998887
Q ss_pred hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCch--hHHHHHHHHHHHHHHHH
Q 022317 85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAE--LSLTAWICFFGTVEGTL 162 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~~~v~~~~ 162 (299)
..+. ........|++++++++++|+.|.++.||..++.+++ .....+....+.+....
T Consensus 132 ~~~~--------------------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (299)
T PRK11453 132 EDSL--------------------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFV 191 (299)
T ss_pred cccC--------------------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHH
Confidence 2110 1112235799999999999999999999987665432 23334444444433333
Q ss_pred HHHHHhcccc--cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317 163 AALIMERGKA--SIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240 (299)
Q Consensus 163 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~ 240 (299)
.....+.+.. ..+...+...|+.+++.++++++++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~ 271 (299)
T PRK11453 192 ASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQ 271 (299)
T ss_pred HHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH
Confidence 3333332110 11222234678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhheeeccc
Q 022317 241 IIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 241 ~~G~~lii~G~~l~~~~~~ 259 (299)
++|++++++|+.+..+.++
T Consensus 272 ~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 272 FLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHhcchh
Confidence 9999999999998876554
No 5
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.95 E-value=9.2e-27 Score=203.95 Aligned_cols=224 Identities=17% Similarity=0.178 Sum_probs=187.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh-cccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGM-KYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA 80 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al-~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv 80 (299)
+++++..+...|.++...++.+++.+. ++++++.++++.++.|+++++++++ +|||+++++ ++|++++++|+
T Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv 136 (292)
T PRK11272 64 TLRQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGI 136 (292)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhH
Confidence 467788888999988778899999999 9999999999999999999999985 699999998 99999999999
Q ss_pred hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 022317 81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEG 160 (299)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~ 160 (299)
.++.. ++. ......|++++++++++||.|.+..||..++ ++.....+++.++.+.+
T Consensus 137 ~ll~~-~~~---------------------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 192 (292)
T PRK11272 137 VLLNS-GGN---------------------LSGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVL 192 (292)
T ss_pred HHHhc-Ccc---------------------cccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHH
Confidence 88752 110 1123579999999999999999999986543 23556778888888877
Q ss_pred HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317 161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~ 240 (299)
.+.....+. +.. ...+...|..+++.+++++.+++.+|++++++.++++++.+.+++|+++++++++++||++++.+
T Consensus 193 ~~~~~~~~~-~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~ 269 (292)
T PRK11272 193 LIASLLSGE-RLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIE 269 (292)
T ss_pred HHHHHHcCC-ccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence 776654332 111 11234678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhheeeccc
Q 022317 241 IIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 241 ~~G~~lii~G~~l~~~~~~ 259 (299)
++|+++++.|+++..+.++
T Consensus 270 iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 270 WLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999876544
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=1.9e-25 Score=195.37 Aligned_cols=235 Identities=18% Similarity=0.254 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
+++|+++++++++- +.++.+.+.|++|++.+.++++..+..+++++++++++|+|+++.+ ++|++++++|+.+
T Consensus 76 ~~~~w~y~lla~~D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~l 148 (334)
T PF06027_consen 76 KRPWWKYFLLALLD-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVL 148 (334)
T ss_pred chhHHHHHHHHHHH-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhh
Confidence 57889999999998 8999999999999999999999999999999999999999999997 9999999999998
Q ss_pred hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 022317 83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTL 162 (299)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~ 162 (299)
+...+... ++++.+..+..+|++++++++++||+++++.|+..++.+ ..+...+..+++.++..+
T Consensus 149 v~~sD~~~--------------~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~i 213 (334)
T PF06027_consen 149 VVVSDVLS--------------GSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGI 213 (334)
T ss_pred eeeecccc--------------cccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHH
Confidence 87544211 111234567789999999999999999999999999875 578888888899998888
Q ss_pred HHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHH
Q 022317 163 AALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRII 242 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~ 242 (299)
...+.|..+....+.. ......+....++...-|.+....++..+|+..++-..+..+++++++++++|+++++..++
T Consensus 214 q~~ile~~~i~~~~w~--~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~ 291 (334)
T PF06027_consen 214 QLAILERSGIESIHWT--SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYIL 291 (334)
T ss_pred HHHheehhhhhccCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHH
Confidence 8877775333333222 22233333334455677888889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhheeeccccC
Q 022317 243 GAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 243 G~~lii~G~~l~~~~~~~~ 261 (299)
|.++|++|.+++...+.+.
T Consensus 292 af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 292 AFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHHHhheEEccCCcc
Confidence 9999999999999765443
No 7
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.94 E-value=7.6e-26 Score=198.40 Aligned_cols=227 Identities=14% Similarity=0.144 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc----cchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 6 LTKLLLLGLLEPVIDQNLYFIGMKY----TTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~~~~al~~----~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
.++.++.+.+....++.+++.++++ +++..++++.++.|+++.+++++++|||+++++ ++|++++++|+.
T Consensus 60 ~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~ 133 (295)
T PRK11689 60 PKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVA 133 (295)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHh
Confidence 3455566666778888888888764 577888899999999999999999999999997 999999999998
Q ss_pred hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 022317 82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT 161 (299)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~ 161 (299)
++...+ ...+ .+ +. ..+......|++++++++++||.|.++.||..++.+ +.... ...+.+.+.
T Consensus 134 li~~~~-~~~~--~~--~~-------~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~---~~~~~~~l~ 197 (295)
T PRK11689 134 WVLGGD-NGLS--LA--EL-------INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF---FILTALALW 197 (295)
T ss_pred heecCC-ccch--hh--hh-------hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH---HHHHHHHHH
Confidence 877221 1000 00 00 001112346999999999999999999999876653 45432 223333333
Q ss_pred HHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317 162 LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI 241 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~ 241 (299)
+.... +. .. .. ..+...|..+++.++ .++++|.+|++++++.++++++.+.+++|+++++++++++||++++.++
T Consensus 198 ~~~~~-~~-~~-~~-~~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~ 272 (295)
T PRK11689 198 IKYFL-SP-QP-AM-VFSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFW 272 (295)
T ss_pred HHHHH-hc-Cc-cc-cCCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHH
Confidence 33322 22 11 11 122345667777774 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhheeeccc
Q 022317 242 IGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 242 ~G~~lii~G~~l~~~~~~ 259 (299)
+|+++++.|+.+....++
T Consensus 273 iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 273 QGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHhHHHHhhhHh
Confidence 999999999988876543
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.94 E-value=1.1e-24 Score=190.89 Aligned_cols=219 Identities=13% Similarity=0.102 Sum_probs=173.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
++++++..+..|++. ...+.+++++++|++++.++++..+.|+++.+++. ||+++ ..++.++++|+.
T Consensus 67 ~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--------~~~~~i~~~Gv~ 133 (293)
T PRK10532 67 AKEQRLPLLFYGVSL-GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--------FVWVVLAVLGLW 133 (293)
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--------HHHHHHHHHHHh
Confidence 467888888889875 88889999999999999999999999999988763 44332 455677899998
Q ss_pred hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 022317 82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT 161 (299)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~ 161 (299)
++. ..+. +.......|++++++++++|+.|.+..||..++.+ +... .+...++++.+.
T Consensus 134 li~-~~~~-------------------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~ 191 (293)
T PRK10532 134 FLL-PLGQ-------------------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFV 191 (293)
T ss_pred eee-ecCC-------------------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHH
Confidence 876 2111 01112357999999999999999999999877754 4554 455566666666
Q ss_pred HHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317 162 LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI 241 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~ 241 (299)
++....+. .. ..+...|..+++.|++++.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.++
T Consensus 192 ~~~~~~~~----~~-~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~ 266 (293)
T PRK10532 192 PIGALQAG----EA-LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQW 266 (293)
T ss_pred HHHHHccC----cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHH
Confidence 66543221 11 11223455667999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhheeecccc
Q 022317 242 IGAIIIIGGLYLVVWGKSK 260 (299)
Q Consensus 242 ~G~~lii~G~~l~~~~~~~ 260 (299)
+|+++++.|++...++.++
T Consensus 267 iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 267 LALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9999999999998766544
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.93 E-value=1.9e-24 Score=188.42 Aligned_cols=218 Identities=16% Similarity=0.130 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317 4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 83 (299)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i 83 (299)
++++.+.+.+.++...++.+++.|+++++++.++.+.++.|+++.+++++++|||+++++ ++|+.+++.|+.++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll 133 (281)
T TIGR03340 60 ATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVL 133 (281)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHH
Confidence 445556666666669999999999999999999999999999999999999999999998 99999999999987
Q ss_pred hhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchh---HHHHHHHHHHHHHH
Q 022317 84 TLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAEL---SLTAWICFFGTVEG 160 (299)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~---~~~~~~~~~~~v~~ 160 (299)
...+. . .....|+.++++++++|+.|.+..|+..++.++.. ....+.+...++..
T Consensus 134 ~~~~~---------------------~-~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (281)
T TIGR03340 134 GLSRF---------------------A-QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPF 191 (281)
T ss_pred hcccc---------------------c-ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHH
Confidence 62111 0 11235788999999999999999887654433211 12222222221111
Q ss_pred HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317 161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~ 240 (299)
.+.....+. ..+. ..+..++.+++.+.+++.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+
T Consensus 192 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~ 267 (281)
T TIGR03340 192 LLLYLKRHG---RSMF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTR 267 (281)
T ss_pred HHHHHHHhc---cchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHH
Confidence 111111111 1111 122345677788888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhh
Q 022317 241 IIGAIIIIGGLYL 253 (299)
Q Consensus 241 ~~G~~lii~G~~l 253 (299)
++|+++++.|+.+
T Consensus 268 ~iG~~lil~Gv~l 280 (281)
T TIGR03340 268 LMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhHHh
Confidence 9999999999876
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.93 E-value=9.6e-25 Score=191.50 Aligned_cols=209 Identities=12% Similarity=0.117 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCC
Q 022317 10 LLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGP 89 (299)
Q Consensus 10 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~ 89 (299)
...+.++.+.++.++++|++++++++++++.++.|+++++++++++|||+++++ +.|++++++|+.++....+
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~- 148 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC-
Confidence 446666678999999999999999999999999999999999999999999998 9999999999998762111
Q ss_pred ccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHh
Q 022317 90 ILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIME 168 (299)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 168 (299)
. . ..++++++++||.|.+..|+..++.. +......+....+.....+. ..
T Consensus 149 --------------------~-~-----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 199 (296)
T PRK15430 149 --------------------S-L-----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---AD 199 (296)
T ss_pred --------------------C-c-----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---cc
Confidence 0 0 14688899999999999888643211 11222333333333322111 11
Q ss_pred cccccceeecchhHHHHHHH-HHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 022317 169 RGKASIWAIHWDTKLVASVY-SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIII 247 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~-~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~li 247 (299)
. ....+. .++..++.+++ .|+ .+.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|++++
T Consensus 200 ~-~~~~~~-~~~~~~~~~~~~~g~-~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI 276 (296)
T PRK15430 200 S-STSHMG-QNPMSLNLLLIAAGI-VTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFI 276 (296)
T ss_pred C-Cccccc-CCcHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1 111111 11122233343 454 5789999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhheeec
Q 022317 248 IGGLYLVVWG 257 (299)
Q Consensus 248 i~G~~l~~~~ 257 (299)
+.|+.+....
T Consensus 277 ~~~~~v~~~~ 286 (296)
T PRK15430 277 WVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHH
Confidence 9888777643
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.92 E-value=7.4e-24 Score=189.59 Aligned_cols=224 Identities=19% Similarity=0.215 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
+++++.++..|+++... +...+.|+++++++.++++.++.|+++++++++++|||+++++ +.++++++.|+++
T Consensus 111 ~~~~~~llp~gl~~~~~-~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l 183 (350)
T PTZ00343 111 KLFLKNFLPQGLCHLFV-HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVAL 183 (350)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHh
Confidence 34778899999998544 5667799999999999999999999999999999999999997 9999999999999
Q ss_pred hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC------chhHHHHHHHHHH
Q 022317 83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP------AELSLTAWICFFG 156 (299)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~ 156 (299)
.+. .+ ......|++++++++++|++++++.||..++.+ ++.....+....+
T Consensus 184 ~~~-~~----------------------~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (350)
T PTZ00343 184 ASV-KE----------------------LHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIA 240 (350)
T ss_pred eec-cc----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHH
Confidence 762 11 112467999999999999999999999887642 2455566667889
Q ss_pred HHHHHHHHHHHhccc-cccee----ecchhHHHHHHHHHHHHHHHHHHHHH----HHHhccCceEEeecchhHHHHHHHH
Q 022317 157 TVEGTLAALIMERGK-ASIWA----IHWDTKLVASVYSGIICSGLTYYIQG----IVMKDRGPVFVAAFSPLCMVIVAIM 227 (299)
Q Consensus 157 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~~~l~~~gi~~~~~~~~~~~----~al~~~~~~~~s~~~~l~pv~~~l~ 227 (299)
.++++|+....|... ...+. ......+..+++ .++.+++++++++ +++++++|.+.++...++|++++++
T Consensus 241 ~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~ 319 (350)
T PTZ00343 241 SLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVS 319 (350)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhh
Confidence 999998887555311 11110 001111223334 3445688888888 4999999999999999999999999
Q ss_pred HHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 228 STIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 228 ~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
+++++||++++.+++|+++++.|++++++-
T Consensus 320 s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 320 SIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred hHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999998754
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=164.25 Aligned_cols=218 Identities=24% Similarity=0.365 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHH-HHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 6 LTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAW-IIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~-~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
+++..+.+.+....++.+++.++++++++.++++.++.|+++.++++ ++++||+++++ +.++++++.|++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~ 142 (292)
T COG0697 69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLIL 142 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhee
Confidence 34677777778899999999999999999999999999999999997 66799999997 999999999999988
Q ss_pred hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH-HHHHHHHHHHHHH
Q 022317 85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTA-WICFFGTVEGTLA 163 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~~~v~~~~~ 163 (299)
..+.. .... ...|+.++++++++|+++.+..|+.. +. ++..... +.+. .......
T Consensus 143 ~~~~~-------------------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~ 198 (292)
T COG0697 143 LGGGG-------------------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLL 198 (292)
T ss_pred cCCCc-------------------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHH
Confidence 32221 0111 57899999999999999999999877 43 3344444 3333 1111111
Q ss_pred HHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHH
Q 022317 164 ALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIG 243 (299)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G 243 (299)
...... . . .......+..+.+.|++++++++.++++++++.++...+.+.+++|++++++++++++|+++..+++|
T Consensus 199 ~~~~~~--~-~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G 274 (292)
T COG0697 199 LFFLSG--F-G-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLG 274 (292)
T ss_pred HHHhcc--c-c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 111111 1 1 12233567888899998888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhheeec
Q 022317 244 AIIIIGGLYLVVWG 257 (299)
Q Consensus 244 ~~lii~G~~l~~~~ 257 (299)
+++++.|+.+...+
T Consensus 275 ~~li~~g~~l~~~~ 288 (292)
T COG0697 275 AALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998865
No 13
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.86 E-value=5.8e-20 Score=149.86 Aligned_cols=219 Identities=14% Similarity=0.085 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317 1 MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA 80 (299)
Q Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv 80 (299)
++++++..+...|... ..-|.+||.+++.+|.+.+..+.++-|+..+++.. |+.. + .+.+.+++.|+
T Consensus 66 ~~~~~~~~~~~yGvsL-g~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~s---Rr~~---d------~vwvaLAvlGi 132 (292)
T COG5006 66 LSKPQRLALLAYGVSL-GGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSS---RRLR---D------FVWVALAVLGI 132 (292)
T ss_pred cChhhhHHHHHHHHHH-HHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhc---cchh---h------HHHHHHHHHHH
Confidence 4678999999999987 89999999999999999999999999998776553 2222 2 77778889998
Q ss_pred hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 022317 81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEG 160 (299)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~ 160 (299)
.++. ..++ +....+..|..+++.++.||+.|.+..||..+..|. .+-+..-+.++.++.
T Consensus 133 ~lL~-p~~~-------------------~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a~gm~vAaviv 191 (292)
T COG5006 133 WLLL-PLGQ-------------------SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVAVGMLVAALIV 191 (292)
T ss_pred Hhhe-eccC-------------------CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHHHHHHHHHHHH
Confidence 8876 2221 345667899999999999999999999998876655 667888888999999
Q ss_pred HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317 161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~ 240 (299)
+|+...... ....++.....-+..+++++.+.|.+-..++++.+..+.+.++.++|.++.+.+++++||.+|+.|
T Consensus 192 ~Pig~~~ag-----~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q 266 (292)
T COG5006 192 LPIGAAQAG-----PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ 266 (292)
T ss_pred hhhhhhhcc-----hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH
Confidence 999874332 112233444555668889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhheeecc
Q 022317 241 IIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 241 ~~G~~lii~G~~l~~~~~ 258 (299)
|+|+.+++.+..=.....
T Consensus 267 wlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 267 WLAIAAVIAASAGSTLTA 284 (292)
T ss_pred HHHHHHHHHHHhcccccc
Confidence 999999999877655543
No 14
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.85 E-value=1.8e-19 Score=158.56 Aligned_cols=238 Identities=16% Similarity=0.205 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
+..+..++..+++. .++..+-+.|++|++.+...++.++.|+++++++.+++|+|.++++ +.++++.++|+++
T Consensus 61 ~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~------~~~v~li~~Gv~~ 133 (303)
T PF08449_consen 61 KIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQ------YLSVLLITIGVAI 133 (303)
T ss_pred cChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHH------HHHHHHHHhhHhe
Confidence 45567788888886 8999999999999999999999999999999999999999999998 9999999999999
Q ss_pred hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHH
Q 022317 83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGT 161 (299)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~ 161 (299)
..+.+.... +.+.........|+++.+++.++.|+..++++|..++++ ++.+.+++...++.+..+
T Consensus 134 ~~~~~~~~~-------------~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~ 200 (303)
T PF08449_consen 134 FTLSDSSSS-------------SSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLL 200 (303)
T ss_pred eeecccccc-------------cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 885443210 000111122234999999999999999999999998775 578999999999999888
Q ss_pred HHHHH--Hhc-ccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchh
Q 022317 162 LAALI--MER-GKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYL 238 (299)
Q Consensus 162 ~~~~~--~~~-~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~ 238 (299)
+.... .+. .+...+....+..+..++...+ +..++..+.++..++.++.+.+++..++.+++++++++++++++++
T Consensus 201 ~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~ 279 (303)
T PF08449_consen 201 ILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSP 279 (303)
T ss_pred HHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCCh
Confidence 88876 221 0111111222233444444444 4567777788899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhheeeccccC
Q 022317 239 GRIIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 239 ~~~~G~~lii~G~~l~~~~~~~~ 261 (299)
.+|+|.++++.|..++.+.++|+
T Consensus 280 ~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 280 LQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999877665
No 15
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.84 E-value=1.4e-22 Score=166.06 Aligned_cols=231 Identities=15% Similarity=0.165 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 5 ILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
+..++++.|+.+ ..+..+.|+|++|.+.++++++..+.|+++.+++|+++|||.++.+ .++..+.+.|+++++
T Consensus 96 ~R~~LiLRg~mG-~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 96 KRKWLILRGFMG-FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIV 168 (346)
T ss_pred cEEEEEeehhhh-hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEe
Confidence 345567788888 7788888999999999999999999999999999999999999999 999999999999987
Q ss_pred hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 022317 85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAA 164 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 164 (299)
+.+.+-.+...+++. +.......|...++.+++.-|...++.|+..|+.|. ...+.+...++.+..++..
T Consensus 169 --RPpFlFG~~t~g~~~-------s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~ 238 (346)
T KOG4510|consen 169 --RPPFLFGDTTEGEDS-------SQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGC 238 (346)
T ss_pred --cCCcccCCCcccccc-------ccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHH
Confidence 233322111112211 223445567888888888888888999998898875 4445555556666555554
Q ss_pred HHHhcccccceeec-chhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHH
Q 022317 165 LIMERGKASIWAIH-WDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIG 243 (299)
Q Consensus 165 ~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G 243 (299)
...+ .+..+ ...+|+.++.+|+++ .+++.+...++++-.+..+++..+...+++.++.+++|+|.||++.|.|
T Consensus 239 ~~ig-----~~~lP~cgkdr~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~G 312 (346)
T KOG4510|consen 239 ASIG-----AVQLPHCGKDRWLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVG 312 (346)
T ss_pred hhcc-----ceecCccccceEEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhc
Confidence 4222 23332 235677788888875 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhheeecc
Q 022317 244 AIIIIGGLYLVVWGK 258 (299)
Q Consensus 244 ~~lii~G~~l~~~~~ 258 (299)
+++++...++...+|
T Consensus 313 a~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 313 AVMVVSSTVWVALKK 327 (346)
T ss_pred eeeeehhHHHHHHHH
Confidence 999999888777554
No 16
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.83 E-value=2.1e-19 Score=154.32 Aligned_cols=236 Identities=14% Similarity=0.180 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 5 ILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
+..++.+.=.....+.++.++.|+.+++++..+++.++.-+|+..++.++..||+++. |++++++++.|+++++
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt 230 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVT 230 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEE
Confidence 4444433333344899999999999999999999999999999999999999999987 6999999999999998
Q ss_pred hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHHH
Q 022317 85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP---AELSLTAWICFFGTVEGT 161 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~v~~~ 161 (299)
.+++.. .++........|.++++++++.||.|.++.||...+.+ |--.+..+..++..++++
T Consensus 231 ~~~s~~---------------~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllw 295 (416)
T KOG2765|consen 231 MGDSKQ---------------NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLW 295 (416)
T ss_pred eccccc---------------cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHh
Confidence 544321 11234556789999999999999999999998777653 212223344456666777
Q ss_pred HHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317 162 LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI 241 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~ 241 (299)
|..++.+.-..+.++.++..+...+++.++++++++-++|.+|.-.++|.++++-+.+..+.+++.+.++-+..+++.++
T Consensus 296 P~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~i 375 (416)
T KOG2765|consen 296 PPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYI 375 (416)
T ss_pred HHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHH
Confidence 66666554244556666666777788888999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHhhhhheeeccccC
Q 022317 242 IGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 242 ~G~~lii~G~~l~~~~~~~~ 261 (299)
+|.+.|++|.++.++.....
T Consensus 376 iGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 376 IGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred HHHHHHHHHHhheecccccc
Confidence 99999999999999865443
No 17
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.83 E-value=3.9e-19 Score=152.90 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317 8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 87 (299)
Q Consensus 8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~ 87 (299)
.+...|++ .++++.++++|++++++++++++.++.|+++++++++++|||+++++ +++++++++|++++...+
T Consensus 72 ~~~~~g~~-~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~ 144 (256)
T TIGR00688 72 SLLLCGLL-IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLK 144 (256)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHc
Confidence 35666666 48999999999999999999999999999999999999999999998 999999999998876211
Q ss_pred CCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 022317 88 GPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIM 167 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 167 (299)
+ + .. .++++++++|+.|.+..|+..++ +. ...... .....+...+.....
T Consensus 145 ~--------------------~---~~----~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~~ 194 (256)
T TIGR00688 145 G--------------------S---LP----WEALVLAFSFTAYGLIRKALKNT-DL-AGFCLE-TLSLMPVAIYYLLQT 194 (256)
T ss_pred C--------------------C---ch----HHHHHHHHHHHHHHHHHhhcCCC-Cc-chHHHH-HHHHHHHHHHHHHHh
Confidence 1 0 01 35788999999999999886443 22 222221 112222222221111
Q ss_pred hcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHH
Q 022317 168 ERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII 231 (299)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~ 231 (299)
+. .......+...|..+++.|++ +.++|.++++++++.++++++.+.+++|+++++++.+.
T Consensus 195 ~~--~~~~~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 195 DF--ATVQQTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred cc--CcccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 11 111111122367777788876 78999999999999999999999999999999999764
No 18
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=144.89 Aligned_cols=219 Identities=15% Similarity=0.153 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
++|.+..+.+.+++. ..++..|.+|..+...-++++=++.+|++.++++.+++|||+++.| ++++.++.+||.
T Consensus 68 ~p~~~~~~~l~a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~ 140 (293)
T COG2962 68 QPKTLLMLALTALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVL 140 (293)
T ss_pred CcHHHHHHHHHHHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHH
Confidence 356667777777765 9999999999999999999999999999999999999999999998 999999999999
Q ss_pred hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 022317 82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT 161 (299)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~ 161 (299)
..++..++. + ..++.=++.|++|...-|+ .+- ++.+-....+..-.+..+
T Consensus 141 ~~~~~~g~l-----------------------p----wval~la~sf~~Ygl~RK~-~~v--~a~~g~~lE~l~l~p~al 190 (293)
T COG2962 141 IQTWLLGSL-----------------------P----WVALALALSFGLYGLLRKK-LKV--DALTGLTLETLLLLPVAL 190 (293)
T ss_pred HHHHHcCCC-----------------------c----HHHHHHHHHHHHHHHHHHh-cCC--chHHhHHHHHHHHhHHHH
Confidence 988655432 1 3455567899999987444 332 235555555555555555
Q ss_pred HHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317 162 LAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI 241 (299)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~ 241 (299)
...+..+. ..+.....++..+..++..|.+ ++++..++..+.|+++-++.+.++|.+|....++++++++|+++..++
T Consensus 191 ~yl~~l~~-~~~~~~~~~~~~~~LLv~aG~v-TavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~ 268 (293)
T COG2962 191 IYLLFLAD-SGQFLQQNANSLWLLLVLAGLV-TAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQL 268 (293)
T ss_pred HHHHHHhc-CchhhhcCCchHHHHHHHhhHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 44444443 1111122344567777778875 699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhheeeccc
Q 022317 242 IGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 242 ~G~~lii~G~~l~~~~~~ 259 (299)
+..+++.+|+.++....-
T Consensus 269 ~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 269 VTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999986543
No 19
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.77 E-value=3.5e-17 Score=142.95 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHh-hHHHHHHHHHHHHhhhcccccccccchh----hhHHHHHHhhhhhhhhccCCcc
Q 022317 17 PVIDQNLYFIGMKYTTATFAAAMYN-ILPAITFLMAWIIRLENVNLKSIRSLAK----VIGTLATVAGAMVMTLIKGPIL 91 (299)
Q Consensus 17 ~~~~~~~~~~al~~~~~~~~~~i~~-~~p~~~~lla~~~~~e~~~~~~~~~~~k----~~~~~l~~~Gv~~i~~~~~~~~ 91 (299)
.+.++.+++.++++++.+.+..+.+ +.+++..+.+.+++|||.+++ | .+|+++.++|++++...+++..
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~ 142 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSA 142 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEecccccc
Confidence 5888899999999999999998877 999999999999999999876 5 8889999999888763221100
Q ss_pred chhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH---HHHHHHHHHHHHHh
Q 022317 92 ELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICF---FGTVEGTLAALIME 168 (299)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~ 168 (299)
+ .....+...|++++++++++|+.|.+..|+. ++ +|....+.+.. .+..+..+...
T Consensus 143 -------------~--~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~~--- 201 (290)
T TIGR00776 143 -------------G--IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGHI--- 201 (290)
T ss_pred -------------c--cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHHh---
Confidence 0 0000233679999999999999999999975 34 45776444443 33332222211
Q ss_pred cccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHh-ccCceEEeecchhHHHHHHHHHHHHhcccchhhHH----HH
Q 022317 169 RGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMK-DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI----IG 243 (299)
Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~-~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~----~G 243 (299)
. . ..+ .+..++..+..|++ ..+++.+|..+.+ +.++++++.+...+|+.+.+++++++||+.++.++ +|
T Consensus 202 ~-~-~~~---~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG 275 (290)
T TIGR00776 202 L-A-KPL---KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVG 275 (290)
T ss_pred c-c-cch---HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHH
Confidence 1 1 111 22333444448887 6999999999999 99999999999999999999999999999999999 99
Q ss_pred HHHHHhhhhheee
Q 022317 244 AIIIIGGLYLVVW 256 (299)
Q Consensus 244 ~~lii~G~~l~~~ 256 (299)
+++++.|+.+...
T Consensus 276 ~~lIi~~~~l~~~ 288 (290)
T TIGR00776 276 IILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 20
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.73 E-value=3.7e-16 Score=132.39 Aligned_cols=231 Identities=17% Similarity=0.206 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
++|+..++.+.+++. .+++.+.+.++++++++..+++.++..+++++++++++|+|++++| |.++.+.++|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHh
Confidence 478899999999996 9999999999999999999999999999999999999999999998 999999999999
Q ss_pred hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchh-HHHHHHHHHHHHHH
Q 022317 82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAEL-SLTAWICFFGTVEG 160 (299)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~v~~ 160 (299)
++-.......+ ++..+ ...++........|+++.++++++.++..++.+|..|+.+.++ .........+.++.
T Consensus 86 lv~~~~~~~~~--~~~~~----~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~ 159 (244)
T PF04142_consen 86 LVQLSSSQSSD--NSSSS----SVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFN 159 (244)
T ss_pred eeecCCccccc--ccccc----ccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 97633221100 00000 0001123445678999999999999999999999999865333 33344455556655
Q ss_pred HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317 161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~ 240 (299)
++.....+.....+..... .+-...+.-++...++-.+....+|+.+...-+.......+++.++++++|+.+++...
T Consensus 160 ~~~~~~~~~~~~~~~g~f~--G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f 237 (244)
T PF04142_consen 160 LLALLLSDGSAISESGFFH--GYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSF 237 (244)
T ss_pred HHHHhcccccccccCCchh--hcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 5554433321111111111 11112223333445566667888999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 022317 241 IIGAIII 247 (299)
Q Consensus 241 ~~G~~li 247 (299)
.+|..++
T Consensus 238 ~lg~~~V 244 (244)
T PF04142_consen 238 LLGAALV 244 (244)
T ss_pred hhheecC
Confidence 9998764
No 21
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.71 E-value=1.2e-17 Score=144.62 Aligned_cols=230 Identities=16% Similarity=0.195 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
+..+..++.+|++. .++..+.+.|+++++++.++++..+.|+++.++++++.+|+.++.. +..++....|+.+
T Consensus 80 ~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~i 152 (316)
T KOG1441|consen 80 KLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAI 152 (316)
T ss_pred ccchHHHHHHHHHH-HHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEE
Confidence 35678888999987 9999999999999999999999999999999999999999999998 9999999999988
Q ss_pred hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHh--hcC-chhHHHHHHHHHHHHH
Q 022317 83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLK--AYP-AELSLTAWICFFGTVE 159 (299)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~--~~~-~~~~~~~~~~~~~~v~ 159 (299)
.+.. ...-+..|.+.++++.+..++.+++.|+..+ +.+ +++....++..++.+.
T Consensus 153 as~~-----------------------e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~ 209 (316)
T KOG1441|consen 153 ASVT-----------------------ELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF 209 (316)
T ss_pred eeec-----------------------cccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH
Confidence 7732 2234678999999999999999999999985 332 5799999999999999
Q ss_pred HH-HHHHHHhcccccceee-cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccch
Q 022317 160 GT-LAALIMERGKASIWAI-HWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMY 237 (299)
Q Consensus 160 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t 237 (299)
++ |+....+++....+.. .++.....+++.. ++....+...+..+.+++|.+.++.+...-++.++.++++|+++.|
T Consensus 210 Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt 288 (316)
T KOG1441|consen 210 LLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVT 288 (316)
T ss_pred HhcchHhhhcccceeeeeccccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCc
Confidence 99 8776655421100011 1111233333333 3345556777899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhheeeccccCCC
Q 022317 238 LGRIIGAIIIIGGLYLVVWGKSKDHK 263 (299)
Q Consensus 238 ~~~~~G~~lii~G~~l~~~~~~~~~~ 263 (299)
+.+.+|+++.++|+.+|.+.|.++++
T Consensus 289 ~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 289 FLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999988766543
No 22
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.6e-14 Score=121.72 Aligned_cols=239 Identities=15% Similarity=0.205 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
.+++..++.+.+++. +++|.+.|.++.+.+++..++.+.+..+.|+++..+++++|++++| |.++++.++|+.
T Consensus 88 ~~~~~lk~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~ 160 (345)
T KOG2234|consen 88 APRETLKVSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVA 160 (345)
T ss_pred ChHHHHHHHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHH
Confidence 356888999999987 8999999999999999999999999999999999999999999998 999999999999
Q ss_pred hhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH-HHHHHHHHH
Q 022317 82 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAW-ICFFGTVEG 160 (299)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~~~v~~ 160 (299)
++-+...+.- + +.+.....+...|....+.++++.++..++.+|.+|+-..+..+.-. ..+++.++.
T Consensus 161 ~vQ~~~~~~~---------~---a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~ 228 (345)
T KOG2234|consen 161 LVQLPSLSPT---------G---AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFN 228 (345)
T ss_pred HHhccCCCCC---------C---ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 9763222110 0 01123456788999999999999999999999999875533333333 335555555
Q ss_pred HHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhH
Q 022317 161 TLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR 240 (299)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~ 240 (299)
+...+..+..... |.-. -.+|-...+.-++..+++-.+....+|+.+-..-+....+..+++.+.++.+++-++|...
T Consensus 229 ~l~~~~~d~~~i~-~~gf-f~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F 306 (345)
T KOG2234|consen 229 LLTILLQDGEAIN-EYGF-FYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYF 306 (345)
T ss_pred HHHHhhccccccc-cCCc-cccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHH
Confidence 5555544432221 1110 0111122222333344455556677788887777778888999999999999999999999
Q ss_pred HHHHHHHHhhhhheeeccccC
Q 022317 241 IIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 241 ~~G~~lii~G~~l~~~~~~~~ 261 (299)
.+|..+++.++.++...++++
T Consensus 307 ~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 307 LLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHHHHHHhhcCCccc
Confidence 999999999999999554443
No 23
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.64 E-value=4.9e-15 Score=124.35 Aligned_cols=223 Identities=16% Similarity=0.181 Sum_probs=173.3
Q ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317 2 TLAILTK-LLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA 80 (299)
Q Consensus 2 ~~~~~~~-~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv 80 (299)
+|++..+ +...|+. .++.-.+-+++++|++.+..++..++.++|+.+++.++.-||+++.- ..-+.+..+|+
T Consensus 79 sw~~~Lr~~aPtala-ta~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L------~l~v~lI~~Gl 151 (349)
T KOG1443|consen 79 SWRDYLRRLAPTALA-TALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWAL------VLIVLLIAVGL 151 (349)
T ss_pred cHHHHHHHhhhhhhh-hhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhhe
Confidence 4666554 4455555 49999999999999999999999999999999999999999999985 66677777788
Q ss_pred hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC----chhHHHHHHHHHH
Q 022317 81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP----AELSLTAWICFFG 156 (299)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~ 156 (299)
.+++ .++ .+-...|..+.+++.++-++-..+.++.+++.| +|...++......
T Consensus 152 flft-~Ks----------------------Tqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M 208 (349)
T KOG1443|consen 152 FLFT-YKS----------------------TQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWM 208 (349)
T ss_pred eEEE-ecc----------------------cceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHH
Confidence 8877 443 234578999999999999998888888888654 5888888888888
Q ss_pred HHHHHHHHHHHhccccc----ceeecchh-HHHHHHHHHH--HHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHH
Q 022317 157 TVEGTLAALIMERGKAS----IWAIHWDT-KLVASVYSGI--ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMST 229 (299)
Q Consensus 157 ~v~~~~~~~~~~~~~~~----~~~~~~~~-~~~~l~~~gi--~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~ 229 (299)
.+.++|..+.+|++... .|...++. .++.+...+. ....+--...+.-+.+++..+.++.+...-+-+.+++.
T Consensus 209 ~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ 288 (349)
T KOG1443|consen 209 SIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAI 288 (349)
T ss_pred HHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHH
Confidence 88888998888863222 22222221 2333222222 12222333455668889999999999999999999999
Q ss_pred HHhcccchhhHHHHHHHHHhhhhhe
Q 022317 230 IILAEQMYLGRIIGAIIIIGGLYLV 254 (299)
Q Consensus 230 ~~~~e~~t~~~~~G~~lii~G~~l~ 254 (299)
++.+|.++...|.|..+...|+.+.
T Consensus 289 ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 289 IILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHhhcchhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998
No 24
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.62 E-value=2.4e-14 Score=105.10 Aligned_cols=136 Identities=16% Similarity=0.152 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317 117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 196 (299)
Q Consensus 117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 196 (299)
..++++++++.+++..++.|--.++. ||..-+..+.....+++..+.+... +++.....++..|..+...|+ ++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g--~~~~~~~~~~k~~lflilSGl-a~gl 79 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTG--NWQAGGEIGPKSWLFLILSGL-AGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcC--ceecccccCcceehhhhHHHH-HHHH
Confidence 56899999999999999999888876 4688888888888877777776444 333222235567888888885 6799
Q ss_pred HHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 197 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 197 ~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
+..+|++|++..+++++..+.-+.|++++++++++++|+++..+++|+.++++|.++...
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999999988764
No 25
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.60 E-value=3.8e-14 Score=114.77 Aligned_cols=228 Identities=10% Similarity=0.070 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317 8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 87 (299)
Q Consensus 8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~ 87 (299)
.+..+++- +.+.+..-+.|+||+|=....+-.+..|+-+++++.++.+++.+|+. ..++++..+|+++.. ++
T Consensus 87 ~YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~k------Y~cVL~IV~GValFm-YK 158 (337)
T KOG1580|consen 87 MYAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRK------YCCVLMIVVGVALFM-YK 158 (337)
T ss_pred HHHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHH------HHHHHHHHHHHHHhh-cc
Confidence 34444444 47778888889999999999999999999999999999999999885 999999999999987 44
Q ss_pred CCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHH
Q 022317 88 GPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALI 166 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 166 (299)
.... ....+.....|.++.+++-..-++....+.+.-..+. ..-+++.+..+.+.+.+....++
T Consensus 159 ~~Kv---------------~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lf 223 (337)
T KOG1580|consen 159 ENKV---------------GGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLF 223 (337)
T ss_pred cccc---------------CCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhhee
Confidence 3221 1233455678999999999999998888888766553 34677888888888877776665
Q ss_pred Hhc-ccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHH
Q 022317 167 MER-GKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAI 245 (299)
Q Consensus 167 ~~~-~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~ 245 (299)
.+. .+...+..-.+..|+.+..+++ ++++++.+.+.-+.+.+|.+-+++.....+++++.++++++.+++.+||+|..
T Consensus 224 TGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtv 302 (337)
T KOG1580|consen 224 TGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTV 302 (337)
T ss_pred hhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHH
Confidence 432 1112223334566788887887 56899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhheeeccc
Q 022317 246 IIIGGLYLVVWGKS 259 (299)
Q Consensus 246 lii~G~~l~~~~~~ 259 (299)
+++.|...-....+
T Consensus 303 lVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 303 LVFSALTADVVDGK 316 (337)
T ss_pred HHHHHhhhHhhcCC
Confidence 99999888775443
No 26
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.59 E-value=1.3e-15 Score=124.67 Aligned_cols=224 Identities=15% Similarity=0.257 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 5 ILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
.|..+++.+++- +-+|++...|.||++.....++-.-..+.+.+++|+++|.|.++.+ ..|++++++|+.+++
T Consensus 77 ~~~hYilla~~D-VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV 149 (336)
T KOG2766|consen 77 KWRHYILLAFVD-VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVV 149 (336)
T ss_pred HHHHhhheeEEe-ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEE
Confidence 455677777776 6777788889999999999999999999999999999999999986 999999999999987
Q ss_pred hccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 022317 85 LIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAA 164 (299)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 164 (299)
..+- +.-++.++.++.+|+++.++++-+||..++..+...++.+ ..+++....++|+++..+-.
T Consensus 150 ~sDV---------------~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~ 213 (336)
T KOG2766|consen 150 FSDV---------------HAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQF 213 (336)
T ss_pred Eeee---------------ccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence 3321 1112355677889999999999999999999999888875 48888888889998888773
Q ss_pred HHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHH
Q 022317 165 LIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGA 244 (299)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~ 244 (299)
+.+..+.. ..++...... .+...++.++-|.+.-..+|..+++..++-......+++++ ..||=.++|...++.
T Consensus 214 -i~~~~~~~--tl~w~~~i~~-yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF 287 (336)
T KOG2766|consen 214 -IFERHHVS--TLHWDSAIFL-YLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAF 287 (336)
T ss_pred -hhhcccee--eEeehHHHHH-HHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHH
Confidence 44431222 2222222222 22234455566666777889999999999999999999999 456777999999999
Q ss_pred HHHHhhhhheeec
Q 022317 245 IIIIGGLYLVVWG 257 (299)
Q Consensus 245 ~lii~G~~l~~~~ 257 (299)
..+..|.+++..+
T Consensus 288 ~~i~~GliiYs~r 300 (336)
T KOG2766|consen 288 ATIATGLIIYSTR 300 (336)
T ss_pred HHHHHhhEEeecc
Confidence 9999999999544
No 27
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.1e-12 Score=111.63 Aligned_cols=233 Identities=12% Similarity=0.112 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317 1 MTLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA 80 (299)
Q Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv 80 (299)
++++..++.+.+.++. .+....-..+++|.+....+++....|+++++....+++.|+++.. +.++....+|.
T Consensus 72 l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s 144 (314)
T KOG1444|consen 72 LDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGS 144 (314)
T ss_pred cChHHHHHHccHHHHH-HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHH
Confidence 4688888999999987 8888999999999999999999999999999999999999998887 99999888888
Q ss_pred hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHH
Q 022317 81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVE 159 (299)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~ 159 (299)
.+....+ ......|+.+++...++-+.+.+..||..+... +.+..+++..+.+.+.
T Consensus 145 ~~~~~~d-----------------------~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~ 201 (314)
T KOG1444|consen 145 VAAAFTD-----------------------LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP 201 (314)
T ss_pred Hhhcccc-----------------------ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH
Confidence 7765222 112344999999999999999999999877543 4588899999999998
Q ss_pred HHHHHHHHhccccccee---ecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccc
Q 022317 160 GTLAALIMERGKASIWA---IHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQM 236 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~ 236 (299)
+....++.+..+.-... ......+..+...++++.++. ++..++.+..++++.++.+..+...+.+...++.+++.
T Consensus 202 l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~is-y~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~ 280 (314)
T KOG1444|consen 202 LLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGIS-YTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPF 280 (314)
T ss_pred HHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHH-HHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCcee
Confidence 88888766531100111 112234566667777665554 45689999999999999998888888888888888899
Q ss_pred hhhHHHHHHHHHhhhhheeeccccCCCC
Q 022317 237 YLGRIIGAIIIIGGLYLVVWGKSKDHKS 264 (299)
Q Consensus 237 t~~~~~G~~lii~G~~l~~~~~~~~~~~ 264 (299)
++...+|..+-+.|-+++++.+.++++.
T Consensus 281 ~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 281 TFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred chhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 9999999999999999999887655443
No 28
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.3e-13 Score=114.45 Aligned_cols=235 Identities=14% Similarity=0.149 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
+.-|+++...++.+ .+...|-+.|++|++=....+-.++.-+-+++...++.++|++..+ .....+...|+.+
T Consensus 80 ~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~e------Yl~~~LIs~Gvsi 152 (327)
T KOG1581|consen 80 VAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFE------YLVAFLISLGVSI 152 (327)
T ss_pred CCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHH------HHHHHHHHhheee
Confidence 34577888888887 8999999999999999999999999999999999999999999997 9999999999988
Q ss_pred hhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHH
Q 022317 83 MTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGT 161 (299)
Q Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~ 161 (299)
..+.+.++ +.+..+..+...|+.++...-+.-++.+..+.++.+++. +++++++...+++++...
T Consensus 153 F~l~~~s~--------------s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~ 218 (327)
T KOG1581|consen 153 FSLFPNSD--------------SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNG 218 (327)
T ss_pred EEEecCCC--------------CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHH
Confidence 77554321 122345567889999999999999999999999998765 578999999988888777
Q ss_pred HHHHHHhccccc--ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhh
Q 022317 162 LAALIMERGKAS--IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG 239 (299)
Q Consensus 162 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~ 239 (299)
.-....+. ..+ ++-..++..++-++....+ ..+++.+.++-+++-++.+.+.++.++-+++++++.++++.++++.
T Consensus 219 ~~li~qg~-~~~av~F~~~hp~~~~Di~l~s~~-gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~ 296 (327)
T KOG1581|consen 219 TYLILQGH-LLPAVSFIKEHPDVAFDILLYSTC-GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE 296 (327)
T ss_pred HhhhcCCC-CchHHHHHHcChhHHHHHHHHHHh-hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh
Confidence 66432222 111 1222233455666666654 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhheeecccc
Q 022317 240 RIIGAIIIIGGLYLVVWGKSK 260 (299)
Q Consensus 240 ~~~G~~lii~G~~l~~~~~~~ 260 (299)
||+|..+++.|+.+-..-+.+
T Consensus 297 q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 297 QWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hccCeeeehHHHHHHHHHHHh
Confidence 999999999999887765544
No 29
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.49 E-value=6.9e-14 Score=106.50 Aligned_cols=125 Identities=26% Similarity=0.411 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022317 126 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVM 205 (299)
Q Consensus 126 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al 205 (299)
++||.+.+..|+..++.+ +.....+++..+.+ .++.....+. .. ....+...+...++.+++++.+++.++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGR-KP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcc-cc--ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 478999999999999874 69999999999988 6666665543 11 2233445677788888887899999999999
Q ss_pred hccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317 206 KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 206 ~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
++.+++.++.+..++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988754
No 30
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.35 E-value=1.8e-11 Score=96.73 Aligned_cols=139 Identities=17% Similarity=0.186 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------cCchhHHHHHHHHHHHHHHHHHHHHHhcccccceee-------c-chhH
Q 022317 117 GALMITAGCFSWSFFIILQAITLKA------YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAI-------H-WDTK 182 (299)
Q Consensus 117 G~~~~l~a~~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~-~~~~ 182 (299)
|.++++++.++.+++.++.|+..++ ..++.+...+....+.+++++...+.|......... . .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999998887 236899999999999999999998887532111110 0 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 183 LVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 183 ~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
+..++..|++. .+.+...+..+++.+|.+.++...++.+.+.++++++++|++|+.++.|+.+.+.|.+++++
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 55555566654 66778889999999999999999999999999999999999999999999999999998864
No 31
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.32 E-value=3.8e-12 Score=102.46 Aligned_cols=238 Identities=12% Similarity=0.070 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317 4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 83 (299)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i 83 (299)
++.+..+..+++. ....+.-..++||.+....+++.++..++++.....+++.|++-.+ +...++.+..-+.-
T Consensus 66 t~aK~WfpiSfLL-v~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va 138 (309)
T COG5070 66 TKAKKWFPISFLL-VVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVA 138 (309)
T ss_pred hhhhhhcCHHHHH-HHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHh
Confidence 3444555666665 6666677789999999999999999999999999999999999888 87777777666655
Q ss_pred hhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHH
Q 022317 84 TLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTL 162 (299)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~ 162 (299)
.+.+.+.. .........|++++..-++.-+.+....||..+-.. .....++|..+++.++++.
T Consensus 139 ~w~D~q~~----------------~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~ 202 (309)
T COG5070 139 TWGDQQAS----------------AFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLS 202 (309)
T ss_pred ccchhhHH----------------HHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHH
Confidence 53332111 011123456999999999999999999998776322 2388899999999999999
Q ss_pred HHHHHhcccccceeec-chhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317 163 AALIMERGKASIWAIH-WDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI 241 (299)
Q Consensus 163 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~ 241 (299)
+.+++|..+....... +.....+++..|+.. +.--++..|.++.++.++.++++.++..-..+-|.++|+|+.+...+
T Consensus 203 ~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si 281 (309)
T COG5070 203 FSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSI 281 (309)
T ss_pred HHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHH
Confidence 9998874222211111 112344566666654 44445578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhheeeccccCCCCC
Q 022317 242 IGAIIIIGGLYLVVWGKSKDHKSP 265 (299)
Q Consensus 242 ~G~~lii~G~~l~~~~~~~~~~~~ 265 (299)
..+.+-.....++...+.++++++
T Consensus 282 ~sillGflsg~iYavaks~k~q~q 305 (309)
T COG5070 282 FSILLGFLSGAIYAVAKSKKQQNQ 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998888888766654443
No 32
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.31 E-value=5.5e-11 Score=98.85 Aligned_cols=225 Identities=13% Similarity=0.093 Sum_probs=155.4
Q ss_pred HHHHHHHHhhcc-cchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchhhcc
Q 022317 19 IDQNLYFIGMKY-TTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTK 97 (299)
Q Consensus 19 ~~~~~~~~al~~-~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~ 97 (299)
+.+.+-++++++ ++...=.++.+-.++.+++++++++++|.+.+| ..++++..+|+++.++.++.+...
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~---- 145 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRS---- 145 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhh----
Confidence 344455555555 344444466788899999999999999999998 999999999999998776554322
Q ss_pred CCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHhc-------
Q 022317 98 GAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMER------- 169 (299)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~------- 169 (299)
..+.-++.+..+...+...|+.+..++-+..|.-.++++...+++. ++-+.+++.-+++.+..+...-=..+
T Consensus 146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~ 225 (330)
T KOG1583|consen 146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFK 225 (330)
T ss_pred hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhc
Confidence 0011112222344567788999999999999999999998888775 56777888777776655433210000
Q ss_pred cc---ccceeecchhHHHHHHHHHHHHHHHHHHHHHHH----HhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHH
Q 022317 170 GK---ASIWAIHWDTKLVASVYSGIICSGLTYYIQGIV----MKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRII 242 (299)
Q Consensus 170 ~~---~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~a----l~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~ 242 (299)
.+ .+.....-|..|+.+++. ++.++....+ -.+.++.++++...++.+++.+++.+.|+.++++..|+
T Consensus 226 se~~~~p~~g~~vP~~~~yLl~n-----~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~l 300 (330)
T KOG1583|consen 226 SESYLIPLLGFKVPSMWVYLLFN-----VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWL 300 (330)
T ss_pred CcceeccccCccccHHHHHHHHH-----HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHH
Confidence 00 001111123344444332 3333333333 34567889999999999999999999999999999999
Q ss_pred HHHHHHhhhhheeecc
Q 022317 243 GAIIIIGGLYLVVWGK 258 (299)
Q Consensus 243 G~~lii~G~~l~~~~~ 258 (299)
|..+++.|.+++....
T Consensus 301 Ga~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 301 GAALVFFGTLLFANVW 316 (330)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888543
No 33
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.29 E-value=3.3e-11 Score=100.32 Aligned_cols=226 Identities=18% Similarity=0.198 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCC
Q 022317 10 LLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGP 89 (299)
Q Consensus 10 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~ 89 (299)
+...++- ..+..+.|.|+.+++++..+++.....+|+.+++.-+++++++.++ |.|+....+|+.++...+-.
T Consensus 90 l~Pal~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~ 162 (372)
T KOG3912|consen 90 LPPALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVH 162 (372)
T ss_pred cChHHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeecc
Confidence 3456666 6777888999999999999999999999999999999999999998 99999999999887632210
Q ss_pred ccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHHh
Q 022317 90 ILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIME 168 (299)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 168 (299)
. . ++....-.+...|+.+.+.+-+.-|+..+.-+|..++.. +|.+...|..+++.+++..++..+.
T Consensus 163 ~--------~-----~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~ 229 (372)
T KOG3912|consen 163 L--------V-----TDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMY 229 (372)
T ss_pred c--------c-----cCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 0 0 000122245678999999999999999999999999875 6899999999999777666665443
Q ss_pred ccccc-cee------ecchhH---------HHHHHHHHHHHH-HHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHH
Q 022317 169 RGKAS-IWA------IHWDTK---------LVASVYSGIICS-GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII 231 (299)
Q Consensus 169 ~~~~~-~~~------~~~~~~---------~~~l~~~gi~~~-~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~ 231 (299)
..+.. .+. ..+..+ ...+...|...+ ++-++.=.+.-|+.++++-.++-.++..+.-+++...
T Consensus 230 yi~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m 309 (372)
T KOG3912|consen 230 YIPSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAM 309 (372)
T ss_pred heecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHH
Confidence 21111 000 000011 112222332221 1111222244677889999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHhhhhhee
Q 022317 232 LAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 232 ~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
..|.+...|+.|..+.+.|+++++
T Consensus 310 ~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 310 GWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988
No 34
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.25 E-value=9.3e-11 Score=102.99 Aligned_cols=138 Identities=12% Similarity=0.102 Sum_probs=109.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhccccccee--ecchhHHHHHHHHH
Q 022317 113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA--IHWDTKLVASVYSG 190 (299)
Q Consensus 113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g 190 (299)
+...|++++++++++|+...+..|.. .+. +|.+..++|+.++.+++.+...... +..... ..+...+ .....+
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~ 79 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICR--QWSYLKTLIQTPQKI-FMLAVS 79 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHcCHHHH-HHHHHH
Confidence 44679999999999999999999764 555 4799999999999887776654332 111100 0111222 233355
Q ss_pred HHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317 191 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 191 i~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
.+..+..+.++++++++.+++.++++.++.|+++.++++++++|+++..+++|+++.++|+.+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 55667889999999999999999999999999999999999999999999999999999988765
No 35
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.22 E-value=1.5e-10 Score=99.57 Aligned_cols=137 Identities=11% Similarity=0.173 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhccc--ccceeecchhH-HHHHHHHHHH
Q 022317 116 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGK--ASIWAIHWDTK-LVASVYSGII 192 (299)
Q Consensus 116 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~-~~~l~~~gi~ 192 (299)
+|..+.++++++|+...+..|. ..+. +|.+..++|++++.+++.+......+.. ...+...+... +..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4889999999999999999997 4555 5799999999999888776654332100 01111111122 3344555554
Q ss_pred HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317 193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
.++.+.+++++++++++.+++.+.++.|+++.++++++++|+++.++++|+++.++|+.+..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999988764
No 36
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=3.6e-12 Score=105.62 Aligned_cols=211 Identities=12% Similarity=0.073 Sum_probs=162.3
Q ss_pred HHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchhhccCCCcC
Q 022317 23 LYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENH 102 (299)
Q Consensus 23 ~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~~~~~~ 102 (299)
+-+++++|++++...+-.++..+|+.++.++++|+|-+... ..++.+.+.|..+=+ ++
T Consensus 118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGv---dq------------- 175 (347)
T KOG1442|consen 118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGV---DQ------------- 175 (347)
T ss_pred ccceehhhcceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehheecc---cc-------------
Confidence 34457999999999999999999999999999999999886 666666666654422 11
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhccccccee--ec-
Q 022317 103 GHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPA-ELSLTAWICFFGTVEGTLAALIMERGKASIWA--IH- 178 (299)
Q Consensus 103 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~- 178 (299)
++..+.-...|.+++..+.++-|+..++.||......+ -+.++++....+.++.+|...+.+. -...+. ..
T Consensus 176 ----E~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge-~~~v~~~~~l~ 250 (347)
T KOG1442|consen 176 ----EGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGE-FQAVVGFPHLP 250 (347)
T ss_pred ----ccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcch-HHHHcCcccch
Confidence 12345567889999999999999999999986665443 4678888889999888888875432 112222 22
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317 179 WDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 179 ~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~ 258 (299)
....|..+...|+++..++|. -.+=+|.++|.+..+-....-..-.+++..+++|.-+...|-+-++++.|...+.+.|
T Consensus 251 a~~Fw~~mtLsglfgF~mgyv-Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 251 AIKFWILMTLSGLFGFAMGYV-TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred HHHHHHHHHHHHHHHHHhhhe-eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence 224455566677766555444 3566899999999999999999999999999999999999999999999999999765
Q ss_pred ccC
Q 022317 259 SKD 261 (299)
Q Consensus 259 ~~~ 261 (299)
..+
T Consensus 330 ~~e 332 (347)
T KOG1442|consen 330 EHE 332 (347)
T ss_pred HHH
Confidence 443
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=90.57 Aligned_cols=212 Identities=12% Similarity=0.137 Sum_probs=152.6
Q ss_pred HHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchhhcc
Q 022317 18 VIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTK 97 (299)
Q Consensus 18 ~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~ 97 (299)
...++.|..+++..+++.++.+..+...|+.+++++++++|+.... ..+.++++.|++++.+.+.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay~DN--------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAYADN--------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEeccc---------
Confidence 4567899999999999999999999999999999999999999885 9999999999999884332
Q ss_pred CCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC--chhHHHHHHHHHHHHHHHHHHHHHhcccccce
Q 022317 98 GAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP--AELSLTAWICFFGTVEGTLAALIMERGKASIW 175 (299)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 175 (299)
.....+.|+.+++.+++.-|+|-+.-|+...+.+ +.-.++.-..++...+.....++......++|
T Consensus 129 ------------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~ 196 (290)
T KOG4314|consen 129 ------------EHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHL 196 (290)
T ss_pred ------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHH
Confidence 2234678999999999999999999999887542 32333332222222222211111111133344
Q ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317 176 AIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 176 ~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
+......|..+.-.+.+... -.++.+.++..+.|...++-+..........+.++-+-..+.....|.+++++|.+++.
T Consensus 197 qsFA~~PWG~l~G~A~L~lA-FN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii 275 (290)
T KOG4314|consen 197 QSFAAAPWGCLCGAAGLSLA-FNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII 275 (290)
T ss_pred HHHhhCCchhhhhHHHHHHH-HhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence 32222335555544444333 34556788888889988888888888888888765444678899999999999999888
Q ss_pred ec
Q 022317 256 WG 257 (299)
Q Consensus 256 ~~ 257 (299)
..
T Consensus 276 iP 277 (290)
T KOG4314|consen 276 IP 277 (290)
T ss_pred cc
Confidence 64
No 38
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.17 E-value=5.3e-10 Score=97.48 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHH
Q 022317 118 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 197 (299)
Q Consensus 118 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 197 (299)
..+.++++++|+...+..|+..++.+ +. ..+.+..+.+++.++..... ....|...+ ..++.....+.+.....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYL--AQVGWSRLP-ATFWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhc--ccCCCCCcc-hhhHHHHHHHHHHHHHH
Confidence 57889999999999999998777643 23 45555566666666655321 112333222 33444444455566788
Q ss_pred HHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 198 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 198 ~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
+.++++++++.+++.++.+.++.|+++.++++++++|++++.+++|+.+++.|+.+...
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999988764
No 39
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.13 E-value=3.9e-10 Score=93.59 Aligned_cols=228 Identities=14% Similarity=0.160 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhh
Q 022317 6 LTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 85 (299)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~ 85 (299)
|+.+..++.+. .....+-.-++.|.+=..-.++..+.-+-+++.+.++-+.|..+.+ .++..+...|.++.++
T Consensus 106 ~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d------~~aA~lm~lGli~FTL 178 (367)
T KOG1582|consen 106 WRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTL 178 (367)
T ss_pred hhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHH------HHHHHHHHHHHHhhhh
Confidence 34455555554 6667777778888887777788888888888899999999999998 9999999999999997
Q ss_pred ccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHH
Q 022317 86 IKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAA 164 (299)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~ 164 (299)
.+++ .++..+..|+.+.-.|-++-|.-.-+++|.++..+ +..++.++...++.+.++...
T Consensus 179 ADs~-------------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~m 239 (367)
T KOG1582|consen 179 ADSQ-------------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPM 239 (367)
T ss_pred cccc-------------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHH
Confidence 6653 34455678999998899999988888999998776 346778888888988888877
Q ss_pred HHHhcccccceee---cchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHH
Q 022317 165 LIMERGKASIWAI---HWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI 241 (299)
Q Consensus 165 ~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~ 241 (299)
.+.+. -.+.|+. ++.......++... .+.++......-++.-++.+++.+...+..+++++++++|..++|.+..
T Consensus 240 vlTge-~f~a~~fcaehp~~tyGy~~~~s~-~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~ 317 (367)
T KOG1582|consen 240 VLTGE-LFSAWTFCAEHPVRTYGYAFLFSL-AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYV 317 (367)
T ss_pred Hhccc-chhhhHHHHhCcHhHHHHHHHHHH-HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHh
Confidence 76543 3444432 22223333333333 2344455555667778999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhheeeccccC
Q 022317 242 IGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 242 ~G~~lii~G~~l~~~~~~~~ 261 (299)
-|..+++.|+++-.+.++.+
T Consensus 318 ~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 318 WSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred hhhHHHHHHHHhhcccCCCC
Confidence 99999999999988876443
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.11 E-value=9.9e-09 Score=87.09 Aligned_cols=218 Identities=16% Similarity=0.162 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhh---hHHHHHHhh
Q 022317 4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKV---IGTLATVAG 79 (299)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~---~~~~l~~~G 79 (299)
+.+...++.|++- .+++...+.|+++.+.+.+..+ ..++-+.+.+.+.++++|.-+..+ +. .++++.++|
T Consensus 43 ~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~-----~~~G~~Al~liiiG 116 (269)
T PF06800_consen 43 TSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQ-----KIIGFLALVLIIIG 116 (269)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcch-----HHHHHHHHHHHHHH
Confidence 6677778888886 9999999999999999999966 578888899999999999888776 33 356777888
Q ss_pred hhhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 022317 80 AMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVE 159 (299)
Q Consensus 80 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~ 159 (299)
+.+....+..+ ++.++..+...|+...+++.+.|..|.+..|. .+. +++....-+.+--.+.
T Consensus 117 v~lts~~~~~~---------------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~ 178 (269)
T PF06800_consen 117 VILTSYQDKKS---------------DKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIG 178 (269)
T ss_pred HHHhccccccc---------------cccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHH
Confidence 87766433221 11122455677999999999999999998664 222 4465555544332222
Q ss_pred HHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhh
Q 022317 160 GTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG 239 (299)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~ 239 (299)
.+.+..+... . .+ ....|.. +..|++ ..++.+++..+.++.+.++.=.+.-+.++++.+.+.+++||+=+.+
T Consensus 179 a~i~~~~~~~--~-~~---~k~~~~n-il~G~~-w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k 250 (269)
T PF06800_consen 179 AFIFNLFSKK--P-FF---EKKSWKN-ILTGLI-WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK 250 (269)
T ss_pred HHHHhhcccc--c-cc---ccchHHh-hHHHHH-HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh
Confidence 2222221111 1 11 1122333 334443 4678899999999999999999999999999999999999987655
Q ss_pred ----HHHHHHHHHhhhhh
Q 022317 240 ----RIIGAIIIIGGLYL 253 (299)
Q Consensus 240 ----~~~G~~lii~G~~l 253 (299)
.++|+++++.|.++
T Consensus 251 e~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 251 EMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHHHHHHHHHHHHhhhc
Confidence 46788888888764
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.07 E-value=2.2e-09 Score=96.27 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHH
Q 022317 114 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 193 (299)
Q Consensus 114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 193 (299)
...-+..+++.-++|+.+.++.|...+..-+|....++|+.+++++++++.+..+. + ..++..+...+..+...|+++
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~-~-~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNR-S-RSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHH-h-cccCcchHHHHHHHHHHHHHH
Confidence 45567888899999999999999999876678999999999999999988875542 1 111211234566677777766
Q ss_pred HHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHH------hcccchhhHHHHHHHHHhhhhheeec
Q 022317 194 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII------LAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 194 ~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~------~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
.+.+.++++++++++++.++++.++.|++++++++++ ++|++++.+++|+++.++|+.+....
T Consensus 89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 5566789999999999999999999999999999998 69999999999999999999887653
No 42
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.03 E-value=7.5e-09 Score=90.49 Aligned_cols=234 Identities=14% Similarity=0.180 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317 8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 87 (299)
Q Consensus 8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~ 87 (299)
..+..|++.+.++..+-+.|+.+.|++..+.+..+.-++.++++..++|||+++++ +.|+.+++.|..++....
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEeC
Confidence 45677777788899999999999999999999999999999999999999999999 999999999998876433
Q ss_pred CCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH---HHH
Q 022317 88 GPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT---LAA 164 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~---~~~ 164 (299)
..+.+ ..+.+ +-...-.......+...... ++..+.....+|..++ +..........++....+ .+.
T Consensus 125 ~~~~~------~~t~~-~l~~~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~ 194 (300)
T PF05653_consen 125 PKEEP------IHTLD-ELIALLSQPGFLVYFILVLV-LILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAIS 194 (300)
T ss_pred CCCCC------cCCHH-HHHHHhcCcceehhHHHHHH-HHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHH
Confidence 22100 00000 00000000111122222222 2222222222232222 111000000111111000 011
Q ss_pred HHHhccccc-ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHH-HHHHHHHHHhccc--chh--
Q 022317 165 LIMERGKAS-IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMV-IVAIMSTIILAEQ--MYL-- 238 (299)
Q Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv-~~~l~~~~~~~e~--~t~-- 238 (299)
..... ... +.....+..| .++..-+.+........+.|+++.+++.+..+.+..=. .+++-+.++++|. .++
T Consensus 195 ~~i~~-~~~g~~~f~~~~~y-~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~ 272 (300)
T PF05653_consen 195 ILIKL-TFSGDNQFTYPLTY-LLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQ 272 (300)
T ss_pred HHHHH-HhcCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHH
Confidence 01100 000 1111222233 33333344556677788999999999887777665544 4555566677873 444
Q ss_pred --hHHHHHHHHHhhhhheeeccc
Q 022317 239 --GRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 239 --~~~~G~~lii~G~~l~~~~~~ 259 (299)
....|+.+++.|+.+....+.
T Consensus 273 ~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 273 IIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHhhheeeccCc
Confidence 446778889999999876543
No 43
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.02 E-value=1.6e-09 Score=91.12 Aligned_cols=213 Identities=13% Similarity=0.065 Sum_probs=130.8
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchh---hcc-CCCcCCCCCC
Q 022317 32 TATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELF---WTK-GAENHGHGSS 107 (299)
Q Consensus 32 ~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~---~~~-~~~~~~~~~~ 107 (299)
+........+..++++++..+...++|++..+ +++..+...|++...+.+.+..... .+. ..+.+++.+.
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~------i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~ 76 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLK------ILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK 76 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceeeehHH------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc
Confidence 34445677889999999999999999998664 9999999999886554332110000 000 0000000000
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH-HHHHHHHHHHHHHHHHhccccccee--ecchhHHH
Q 022317 108 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAW-ICFFGTVEGTLAALIMERGKASIWA--IHWDTKLV 184 (299)
Q Consensus 108 ~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~ 184 (299)
.........|....+.+.++-++..++.++..++.+........ ..+.+.+.........+......+. ...+...+
T Consensus 77 ~~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (222)
T TIGR00803 77 TLMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW 156 (222)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH
Confidence 11223556788888888888888999988876654321111111 1122222211111111110111111 11112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhe
Q 022317 185 ASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 254 (299)
Q Consensus 185 ~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~ 254 (299)
.+. +...++..+..+.+|+.++...+....++++++.++++++++|+++..+++|+.+++.|+.++
T Consensus 157 ~~~----~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVG----LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHH----HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 222 234566777899999999999999999999999999999999999999999999999998764
No 44
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.00 E-value=1.3e-09 Score=81.54 Aligned_cols=77 Identities=22% Similarity=0.437 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317 4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 83 (299)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i 83 (299)
+.+.+.+..|+++...++.++++|+++.+ +.++++.++.|+++++++++++|||+++++ +.+++++++|++++
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~------~~a~~l~~~Gv~li 104 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRR------WLAILLILIGVILI 104 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHHHH
Confidence 44566777788886699999999999999 588899999999999999999999999997 99999999999999
Q ss_pred hhcc
Q 022317 84 TLIK 87 (299)
Q Consensus 84 ~~~~ 87 (299)
...+
T Consensus 105 ~~~~ 108 (113)
T PF13536_consen 105 AWSD 108 (113)
T ss_pred hhhh
Confidence 8433
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.00 E-value=9.6e-09 Score=78.21 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHH
Q 022317 116 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 195 (299)
Q Consensus 116 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 195 (299)
.|+++.+++.++-+...++.|+-.++.++ ...... . . ..... . ......++.|+++.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~-~--------------~~p~~~i~lgl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLA-F--------------GLALRAVLLGLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHH-H--------------hccHHHHHHHHHHHH
Confidence 37889999999999999999998887653 221111 0 0 00000 0 011235678888899
Q ss_pred HHHHHHHHHHhccCceEEeecchhHHHHHHHHHHH--HhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317 196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI--ILAEQMYLGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 196 ~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~--~~~e~~t~~~~~G~~lii~G~~l~~~~~~ 259 (299)
+++.+|.+++++.+.+.+..+..+.+++..+.++. ++||++|+.+++|++++++|+++..+.++
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999998888888875 79999999999999999999999876433
No 46
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.96 E-value=8.1e-09 Score=88.84 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022317 128 WSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKD 207 (299)
Q Consensus 128 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~ 207 (299)
|+...+..|...++..++....++++..+.+++.+.... . .+..++...+..+.++..+.+.++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~----~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~ 70 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR----R------PPLKRLLRLLLLGALQIGVFYVLYFVAVKR 70 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh----c------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677778777766677888999998888877765542 1 123455666677777778899999999999
Q ss_pred cCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 208 RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 208 ~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
.+++.++++..+.|+++.+++.++++|++++.+++|+.+.++|+.+...
T Consensus 71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 71 LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 9999999999999999999999999999999999999999999988764
No 47
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.93 E-value=1.8e-08 Score=88.34 Aligned_cols=131 Identities=9% Similarity=0.054 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHH
Q 022317 118 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 197 (299)
Q Consensus 118 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 197 (299)
....++..+.|+...+..|...++. +|.....+|+.++++++++....... . . .+..++......|++.....
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~-~---~--~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGH-P---L--PTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCC-C---C--CcHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999877765 57999999999999988877653221 1 1 12245666667777665667
Q ss_pred HHHHHHHH-hccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 198 YYIQGIVM-KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 198 ~~~~~~al-~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
+.+++++. ++.++..++++.++.|+++.+++.+ ++|+++..+++|+++.++|+.+...
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 78888888 9999999999999999999999985 7999999999999999999988764
No 48
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.91 E-value=5.2e-09 Score=78.35 Aligned_cols=107 Identities=18% Similarity=0.309 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHH
Q 022317 151 WICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI 230 (299)
Q Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~ 230 (299)
+++..+.++.......... ....+.......+......|++....++.++.+++++.++ .++.+..+.|+++.+++.+
T Consensus 3 ~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGR-LRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHcc-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 4556666666665554221 1111111122334555666666656889999999999995 8889999999999999999
Q ss_pred HhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317 231 ILAEQMYLGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 231 ~~~e~~t~~~~~G~~lii~G~~l~~~~~~ 259 (299)
+++|++++.+++|..++++|+.+..+.+.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999887543
No 49
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.88 E-value=8.4e-07 Score=78.41 Aligned_cols=242 Identities=15% Similarity=0.124 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHhhHHHHHHHHHHHHhhhcc---cccccccchhhhHHHHHH
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA-AMYNILPAITFLMAWIIRLENV---NLKSIRSLAKVIGTLATV 77 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~p~~~~lla~~~~~e~~---~~~~~~~~~k~~~~~l~~ 77 (299)
+.+.+..-++.|++- .+++..++.++++.+.+.+. +-..++-++..++..++++|-. +..+ ..--.+|+++.+
T Consensus 69 ~~~~~~~~~l~G~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~lil 145 (345)
T PRK13499 69 SGSTLLPVFLFGALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVAL 145 (345)
T ss_pred CHHHHHHHHHHHHHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHH
Confidence 445667777788876 99999999999999999998 4578999999999999988644 2221 111377888899
Q ss_pred hhhhhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHH-------HHHHHHHhhcCchhHHHH
Q 022317 78 AGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFI-------ILQAITLKAYPAELSLTA 150 (299)
Q Consensus 78 ~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------v~~k~~~~~~~~~~~~~~ 150 (299)
+|+++........ +++++.+...+.+...|++.++++++.++.|. ...+...+..-++.....
T Consensus 146 iGi~l~s~Ag~~k----------~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~l 215 (345)
T PRK13499 146 IGVAIVGRAGQLK----------ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAAL 215 (345)
T ss_pred HHHHHHHHhhhhc----------ccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHH
Confidence 9998887422111 00000000234567889999999999999999 333321111112232222
Q ss_pred HHHH---HHHHHHHHHHHHH-h-c-cccc---ceeecc---hhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEee---
Q 022317 151 WICF---FGTVEGTLAALIM-E-R-GKAS---IWAIHW---DTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAA--- 215 (299)
Q Consensus 151 ~~~~---~~~v~~~~~~~~~-~-~-~~~~---~~~~~~---~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~--- 215 (299)
-++. .+..+.-...... . . .+.. +..... ..+...-...|+ .-.+++++|..+-++.+......
T Consensus 216 p~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~ 294 (345)
T PRK13499 216 PSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWM 294 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHH
Confidence 2222 3333222221121 1 1 0111 111110 111122223333 34677888888888886654444
Q ss_pred c-chhHHHHHHHHHHHHhcccch------hhHHHHHHHHHhhhhheeecc
Q 022317 216 F-SPLCMVIVAIMSTIILAEQMY------LGRIIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 216 ~-~~l~pv~~~l~~~~~~~e~~t------~~~~~G~~lii~G~~l~~~~~ 258 (299)
+ +.+..+++.+.+. ++||.=+ ..-++|++++++|..+....+
T Consensus 295 l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 295 LHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred HhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 3 3777788999998 5999655 566999999999998877653
No 50
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.88 E-value=8.2e-10 Score=81.41 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
++|.|..+.+.|+.+ ++++.+||.|++...++..+.+..+.|++++++++++++||++..+ ++|+.+..+|++
T Consensus 63 ~~k~~lflilSGla~-glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gai 135 (140)
T COG2510 63 GPKSWLFLILSGLAG-GLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAI 135 (140)
T ss_pred CcceehhhhHHHHHH-HHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCee
Confidence 567888889999776 9999999999999999999999999999999999999999999998 999999999998
Q ss_pred hhh
Q 022317 82 VMT 84 (299)
Q Consensus 82 ~i~ 84 (299)
++.
T Consensus 136 lvs 138 (140)
T COG2510 136 LVS 138 (140)
T ss_pred eEe
Confidence 865
No 51
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.87 E-value=5.2e-08 Score=85.55 Aligned_cols=131 Identities=13% Similarity=0.042 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHH
Q 022317 116 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 195 (299)
Q Consensus 116 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 195 (299)
.+++++++++++|+...+..|...+..+ |....++++..+.+++.++.. . +.... ..+..++ .+.+...
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~---~---~~~~~---~~~~~~~-~~~l~~~ 72 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG---F---PRLRQ---FPKRYLL-AGGLLFV 72 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc---c---ccccc---ccHHHHH-HHhHHHH
Confidence 4678899999999999999999888875 799999999999888776431 1 11111 1112222 2333333
Q ss_pred HHHHHHHHHHh----ccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 196 LTYYIQGIVMK----DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 196 ~~~~~~~~al~----~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
..+.+++.+++ ..++..++++.++.|+++.++++++++|++++.+++|+++.++|+.+....
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 44445555554 457778889999999999999999999999999999999999999888753
No 52
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.84 E-value=6.5e-09 Score=78.81 Aligned_cols=77 Identities=23% Similarity=0.504 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
+++++......|.+...+++.+++.++++++++.++++.++.|+++.+++++++||++++++ ++|+++.++|++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~ 122 (126)
T PF00892_consen 49 SPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVV 122 (126)
T ss_pred ChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHH
Confidence 56788888999998779999999999999999999999999999999999999999999997 999999999998
Q ss_pred hhh
Q 022317 82 VMT 84 (299)
Q Consensus 82 ~i~ 84 (299)
++.
T Consensus 123 l~~ 125 (126)
T PF00892_consen 123 LIS 125 (126)
T ss_pred HHH
Confidence 864
No 53
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.83 E-value=3.3e-08 Score=83.58 Aligned_cols=139 Identities=12% Similarity=0.208 Sum_probs=113.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhccccccee-ecchhHHHHHHHHHHH
Q 022317 114 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA-IHWDTKLVASVYSGII 192 (299)
Q Consensus 114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~ 192 (299)
...|+++++.+-+.|+.-..+.|- .+..+ +.++...+.+.+.++.........+ ....+. ..++..+......+.+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~-~~~~~~~~~~p~~~~~~~l~a~l 81 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQ-WRELKQLLKQPKTLLMLALTALL 81 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCcHHHHHHHHHHHH
Confidence 356999999999999999988775 55554 5899999999998888877766543 222222 2333455666666665
Q ss_pred HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
....+.+|.||.++.....+++-.+++|.+.+++|.++++|+++..|+++.++..+|+....+
T Consensus 82 -i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 82 -IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred -HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999888764
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.83 E-value=7.2e-08 Score=84.84 Aligned_cols=126 Identities=10% Similarity=0.095 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHH
Q 022317 118 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 197 (299)
Q Consensus 118 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~ 197 (299)
.++.++++++|+...+..|...++. +|....++|+.++++.+++... . +.. .+..++..|+......
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~---~-~~~--------~~~~~~~~g~~~~~~~ 72 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVA---R-PKV--------PLNLLLGYGLTISFGQ 72 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhc---C-CCC--------chHHHHHHHHHHHHHH
Confidence 3668899999999999999888776 5799999999887766544331 1 111 1122333344333445
Q ss_pred HHHHHHHHhc-cCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 198 YYIQGIVMKD-RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 198 ~~~~~~al~~-~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
+.+++.++++ .++..++++..+.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus 73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 5566788887 5778999999999999999999999999999999999999999988874
No 55
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.80 E-value=1.4e-07 Score=84.78 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHH
Q 022317 119 LMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY 198 (299)
Q Consensus 119 ~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~ 198 (299)
.+.+.--.+...+.+..|+..+..|-|+.+..+++.++.++..+... ....+.+... .....+..++..|++.. ..+
T Consensus 52 ~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~~~~~~~~llp~gl~~~-~~~ 128 (350)
T PTZ00343 52 LLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIK-SLKLFLKNFLPQGLCHL-FVH 128 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCC-CHHHHHHHHHHHHHHHH-HHH
Confidence 33333344445677889999988865899999999999876555432 2110111111 01235667777777653 457
Q ss_pred HHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 199 YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 199 ~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
...+.++++.+++.+.++..++|+++++++.++++|++++.++.+++++++|+.+...
T Consensus 129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 7778999999999999999999999999999999999999999999999999998763
No 56
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.76 E-value=1e-07 Score=83.97 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022317 129 SFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDR 208 (299)
Q Consensus 129 a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~ 208 (299)
..+++++|...++.+.|.....+++.++.+...+... ....+.. ..+..++..++..|++. ++.+.+.+++++++
T Consensus 15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~ 89 (302)
T TIGR00817 15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRL---KISSALLKLLLPVAIVH-TIGHVTSNVSLSKV 89 (302)
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCC---CCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 3455778988888778899999999888776655421 1110111 12235677777788874 77788999999999
Q ss_pred CceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317 209 GPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 209 ~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
+++.++++..+.|+++++++.++++|+++..+++|++++++|+.+..
T Consensus 90 s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 90 AVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999998754
No 57
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.67 E-value=1.3e-07 Score=70.28 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317 189 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 189 ~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
.++++.++++.++.+++++.+.+.+-.+..+.++++.+++++++||++++.+++|++++++|+++..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3345667889999999999999999999999999999999999999999999999999999988764
No 58
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.59 E-value=3.8e-07 Score=67.76 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 11 LLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 11 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
..+++..+..+.++..++++.|.+.+..+.++.++++.++++++++||+++++ ++|+.+.++|++++.
T Consensus 41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 34446678899999999999999999998889999999999999999999997 999999999998876
No 59
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.54 E-value=2.1e-06 Score=74.69 Aligned_cols=141 Identities=14% Similarity=0.240 Sum_probs=104.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHH
Q 022317 114 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 193 (299)
Q Consensus 114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ 193 (299)
...+....+..++.|+......|+..+...........+...+.....+... .+ ........ ..++.....+.+.
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~--~~~~~~~~~~~~~ 79 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LE--PRGLRPAL--RPWLLLLLLALLG 79 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hh--cccccccc--cchHHHHHHHHHH
Confidence 4567888888899999999998887776333355555577666666332222 11 11111111 1134455566666
Q ss_pred HHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHH-HHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317 194 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMST-IILAEQMYLGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 194 ~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~-~~~~e~~t~~~~~G~~lii~G~~l~~~~~~ 259 (299)
....+.+++.++++.++..++.+.++.|+++.+++. ++++|++++.++.|..+.+.|+++......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 788899999999999999999999999999999997 666999999999999999999999887543
No 60
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.44 E-value=2.9e-06 Score=74.31 Aligned_cols=131 Identities=18% Similarity=0.169 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317 117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 196 (299)
Q Consensus 117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 196 (299)
|++++++++++|+...+..|+.. +.+ +.+.. ...++.++.......... + .+ .....+..-+..|+ .-.+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~--~~--~~~~~~~~g~l~G~-~w~i 71 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVL-P--EF--WALSIFLVGLLSGA-FWAL 71 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhC-C--cc--cccHHHHHHHHHHH-HHHh
Confidence 67899999999999999988865 332 23332 345555555444443322 1 11 11122332333333 3578
Q ss_pred HHHHHHHHHhccCceEEeecch-hHHHHHHHHHHHHhcccchhhH----HHHHHHHHhhhhheeec
Q 022317 197 TYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 197 ~~~~~~~al~~~~~~~~s~~~~-l~pv~~~l~~~~~~~e~~t~~~----~~G~~lii~G~~l~~~~ 257 (299)
++.+++.++++.+.+.+-.+.. +.++++.+++.+++||+.+..+ ++|.+++++|+.+....
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 8899999999999999988888 8999999999999999999999 99999999999988654
No 61
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.9e-06 Score=73.90 Aligned_cols=224 Identities=14% Similarity=0.208 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317 8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 87 (299)
Q Consensus 8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~ 87 (299)
+....|++.+.++...-|.|+.+.|++..+.+..+.-++.++++..+++||++... .+|+.++++|-.+++.-.
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEec
Confidence 45567888889999999999999999999999999999999999999999999998 999999999987777433
Q ss_pred CCccchhhccCCCcCCCCCCCCCc------cchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 022317 88 GPILELFWTKGAENHGHGSSGTTT------HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGT 161 (299)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~ 161 (299)
..+ + +..+... ....+-+...+...++.=.+ ..|. ++.. .....+..+++.+-.+
T Consensus 139 P~e---------~----~i~t~~el~~~~~~~~Fliy~~~iil~~~il~~--~~~p---~~g~-tnilvyi~i~s~iGS~ 199 (335)
T KOG2922|consen 139 PKE---------Q----EIESVEEVWELATEPGFLVYVIIIILIVLILIF--FYAP---RYGQ-TNILVYIGICSLIGSL 199 (335)
T ss_pred Ccc---------c----ccccHHHHHHHhcCccHHHHHHHHHHHHHHHhe--eecc---cccc-cceeehhhHhhhhcce
Confidence 211 0 0000000 01111111111111111111 1111 1111 1123333333333111
Q ss_pred H--------HH--HHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchh-HHHHHHHHHHH
Q 022317 162 L--------AA--LIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPL-CMVIVAIMSTI 230 (299)
Q Consensus 162 ~--------~~--~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l-~pv~~~l~~~~ 230 (299)
- .+ ..+.+ +.+ ...+..|..++.... +......-.+.|++..+++.++.+.+. -..++++-+.+
T Consensus 200 tV~svKalg~aiklt~~g-~~q---l~~~~ty~~~l~~~~-~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I 274 (335)
T KOG2922|consen 200 TVMSVKALGIAIKLTFSG-NNQ---LFYPLTWIFLLVVAT-CVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAI 274 (335)
T ss_pred eeeeHHHHHHHHHHHhcC-Ccc---cccHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 0 01 11111 111 112223333333333 335555567899999998877776665 45566666778
Q ss_pred Hhcccc--h----hhHHHHHHHHHhhhhheeeccccC
Q 022317 231 ILAEQM--Y----LGRIIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 231 ~~~e~~--t----~~~~~G~~lii~G~~l~~~~~~~~ 261 (299)
+|+|-- + ...+.|+..++.|+.+....|.++
T Consensus 275 ~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~ 311 (335)
T KOG2922|consen 275 LFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDME 311 (335)
T ss_pred HHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecccc
Confidence 888732 2 356788899999999986554433
No 62
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.30 E-value=2.8e-05 Score=68.81 Aligned_cols=143 Identities=13% Similarity=0.031 Sum_probs=97.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHH
Q 022317 114 SIKGALMITAGCFSWSFFIILQAITLKA-YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 192 (299)
Q Consensus 114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 192 (299)
...+.++.-.-++|-+...+......++ .+.|..-.++.+..-.++..+...... ....+.......||.-+.++++
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~--~~~~~~~~~~~~~w~y~lla~~ 88 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRR--GFKKWLKVLKRPWWKYFLLALL 88 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcc--ccccchhhcchhHHHHHHHHHH
Confidence 3445555555555555555555544443 233555555555554444444333222 1112222222455666666765
Q ss_pred HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317 193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~ 259 (299)
- ..+.++...|.++++.+.+.++.....++++++++++++++.++.+++|+++.++|+.+......
T Consensus 89 D-v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 89 D-VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred H-HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 5 67899999999999999999999999999999999999999999999999999999999887643
No 63
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.29 E-value=6.7e-07 Score=74.53 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=97.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHH
Q 022317 113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 192 (299)
Q Consensus 113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 192 (299)
...+|..+..++ ..+-...+..++..+.. |......+++.-.+...|..+.... . .+.....+.| ++.=|+.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~-~--v~gp~g~R~~--LiLRg~m 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQ-P--VIGPEGKRKW--LILRGFM 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEee-e--eecCCCcEEE--EEeehhh
Confidence 556788888888 77777788888877664 4555555554444444444332221 0 1111111222 2333443
Q ss_pred HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317 193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~ 258 (299)
+ ..+.++.+|++++.+-+.+.++....|+++.++++++++|+.|+...+|..+.+.|+++..+..
T Consensus 107 G-~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 107 G-FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred h-hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 3 4567888999999999999999999999999999999999999999999999999999999753
No 64
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.25 E-value=5.2e-06 Score=72.83 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
+..+..++..|++...+.+.++++++++.+++.++++.++.|++..++++++++|+++..+ ++|..+.++|++.
T Consensus 205 ~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~------~iG~~lIl~~~~~ 278 (293)
T PRK10532 205 WSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQ------WLALGAIIAASMG 278 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHH
Confidence 3445556788898889999999999999999999999999999999999999999999998 9999999999998
Q ss_pred hhhc
Q 022317 83 MTLI 86 (299)
Q Consensus 83 i~~~ 86 (299)
....
T Consensus 279 ~~~~ 282 (293)
T PRK10532 279 STLT 282 (293)
T ss_pred HHhc
Confidence 8743
No 65
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.17 E-value=2.4e-05 Score=58.55 Aligned_cols=68 Identities=18% Similarity=0.385 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317 191 IICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 191 i~~~~~~~~~~~~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~ 258 (299)
+++.+++++++..++++.+.+.+=.+ ..+.-+.+.+.++++++|++++.+++|+.++++|++......
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 33457789999999999998766555 468889999999999999999999999999999999886543
No 66
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.14 E-value=5.5e-05 Score=66.71 Aligned_cols=129 Identities=14% Similarity=0.075 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhhcC-c--hhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHH
Q 022317 127 SWSFFIILQAITLKAYP-A--ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGI 203 (299)
Q Consensus 127 ~~a~~~v~~k~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~ 203 (299)
++..+.+.+++..++.. . +..+++.++....+...+....... ... +...+...+..+++ ..++..+.+.
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF---PKS---RKIPLKKYAILSFL-FFLASVLSNA 83 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc---cCC---CcChHHHHHHHHHH-HHHHHHHHHH
Confidence 34446677888777543 3 6778888888877766665543321 011 11223333344443 4667788899
Q ss_pred HHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccCC
Q 022317 204 VMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH 262 (299)
Q Consensus 204 al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~~ 262 (299)
++++++.....+.-...|+.+++++.++++++.+..++++.+++.+|+.+....+.++.
T Consensus 84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 99999999999999999999999999999999999999999999999999998755443
No 67
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.09 E-value=1.8e-05 Score=60.27 Aligned_cols=70 Identities=20% Similarity=0.328 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHH--HhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 9 LLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWI--IRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 9 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~--~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
++..|+...++.+.+|..++++.+++.+..+.+..+.++.+.++. +++|++++.+ ++|+.+.++|++++.
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 577888888999999999999999999999999999888888885 7999999997 999999999999976
No 68
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.05 E-value=9.3e-05 Score=57.16 Aligned_cols=132 Identities=15% Similarity=0.103 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317 117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 196 (299)
Q Consensus 117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 196 (299)
..+++++++++-+.....+.+..++..+|+...+..+..+.+.+.....+.+.+ ++....+..||..+ .|++ ..+
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~---~~~~~~~~p~w~~l-GG~l-G~~ 76 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP---SLASLSSVPWWAYL-GGLL-GVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc---ccchhccCChHHhc-cHHH-HHH
Confidence 467889999999999999999999887789999999999999988888776642 22222222333333 4454 466
Q ss_pred HHHHHHHHHhccCceEEeecchh-HHHHHHHHHHH----HhcccchhhHHHHHHHHHhhhhh
Q 022317 197 TYYIQGIVMKDRGPVFVAAFSPL-CMVIVAIMSTI----ILAEQMYLGRIIGAIIIIGGLYL 253 (299)
Q Consensus 197 ~~~~~~~al~~~~~~~~s~~~~l-~pv~~~l~~~~----~~~e~~t~~~~~G~~lii~G~~l 253 (299)
...+..+.+++++++....+... +-+.+++++.+ .-++++++.+++|.+++++|+.+
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 67778889999998766655544 55556666664 23468999999999999999864
No 69
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.94 E-value=2.1e-05 Score=68.87 Aligned_cols=120 Identities=19% Similarity=0.169 Sum_probs=88.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHH
Q 022317 113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 192 (299)
Q Consensus 113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 192 (299)
+...|..+++.++++.+....++||...+.+. .... . .....+....+.|| .|++
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~------------------~--~~~~~~~l~~~~W~----~G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLR------------------A--GSGGRSYLRRPLWW----IGLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccc------------------c--cchhhHHHhhHHHH----HHHH
Confidence 45789999999999999999999997776532 0000 0 00000000112222 2333
Q ss_pred HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
..+++..+.+.|+...+++.++.+..+.-++..+++..+++|+++..++.|+++++.|..+....
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 34556677788999999999999999999999999999999999999999999999998887754
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.93 E-value=1.3e-06 Score=71.93 Aligned_cols=224 Identities=17% Similarity=0.176 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhh---hHHHHHH
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKV---IGTLATV 77 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~---~~~~l~~ 77 (299)
+++.+..-++.|++- ..++..-+.|+++.+++.+..+ ..++-+-+.+++.+.++|-.+..+ +. +++++.+
T Consensus 55 T~~~~iv~~isG~~W-s~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~-----~IlG~iAliliv 128 (288)
T COG4975 55 TLTIFIVGFISGAFW-SFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ-----IILGFIALILIV 128 (288)
T ss_pred chhhHHHHHHhhhHh-hhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh-----HHHHHHHHHHHH
Confidence 455566666677765 8899999999999999999965 668888889999999999888665 23 3345555
Q ss_pred hhhhhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 022317 78 AGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGT 157 (299)
Q Consensus 78 ~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~ 157 (299)
+|+.+-...+.. +.+.++..+...|+...+.+.+.|..|.++.+...-+ . +....-+ .++.
T Consensus 129 iG~~lTs~~~~~---------------nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~--g-~saiLPq-AiGM 189 (288)
T COG4975 129 IGIYLTSKQDRN---------------NKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDVD--G-LSAILPQ-AIGM 189 (288)
T ss_pred HhheEeeeeccc---------------cccccChHhhhhheeeeeeeccceeeeEeeecccccc--c-hhhhhHH-HHHH
Confidence 666554422210 0112334556789999999999999999986654322 1 2222222 2222
Q ss_pred HHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccch
Q 022317 158 VEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMY 237 (299)
Q Consensus 158 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t 237 (299)
++.....-.... +...+...+.-...|++ -++++.++..+-++.+.++.=.+.-+..+++.+-+.++++|+=|
T Consensus 190 v~~ali~~~~~~------~~~~~K~t~~nii~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKt 262 (288)
T COG4975 190 VIGALILGFFKM------EKRFNKYTWLNIIPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKT 262 (288)
T ss_pred HHHHHHHhhccc------ccchHHHHHHHHhhHHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCc
Confidence 222222211110 11111222333334543 36788889999999999988888889999999999999999888
Q ss_pred hhH----HHHHHHHHhhhhheeec
Q 022317 238 LGR----IIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 238 ~~~----~~G~~lii~G~~l~~~~ 257 (299)
..+ ++|++++++|..+....
T Consensus 263 kkEm~~v~iGiilivvgai~lg~~ 286 (288)
T COG4975 263 KKEMVYVIIGIILIVVGAILLGIA 286 (288)
T ss_pred hhhhhhhhhhHHHHHHHhhhhhee
Confidence 765 57888888887776543
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.83 E-value=6.8e-05 Score=55.36 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 193 CSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
+.++++.++..++++++.+.+=.+ ..+.-+.+.++++++|+|++++.+++|+.++++|++.....
T Consensus 39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 446788888999999887655444 55788889999999999999999999999999999998654
No 72
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.74 E-value=0.00019 Score=63.65 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=93.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH--HH--HHHHHhcccccceeecchhHHHHHHH
Q 022317 113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEG--TL--AALIMERGKASIWAIHWDTKLVASVY 188 (299)
Q Consensus 113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~--~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (299)
+...|+++.+++++||+.+.+-.|| .++.+ ++.. |. ..+.... .| ...+..+.-.+.....+...+..-+.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 3578999999999999999998888 55542 4433 32 1111111 11 11111110112222223344555555
Q ss_pred HHHHHHHHHHHHHHHHHhccCceEEe-ecchhHHHHHHHHHHHHhcccc-------hhhHHHHHHHHHhhhhheeecccc
Q 022317 189 SGIICSGLTYYIQGIVMKDRGPVFVA-AFSPLCMVIVAIMSTIILAEQM-------YLGRIIGAIIIIGGLYLVVWGKSK 260 (299)
Q Consensus 189 ~gi~~~~~~~~~~~~al~~~~~~~~s-~~~~l~pv~~~l~~~~~~~e~~-------t~~~~~G~~lii~G~~l~~~~~~~ 260 (299)
.|++ -.+++..+..++++.+.+... +...++-+.+.+++.+++||-. ...-.+|.+++++|+.+..+..++
T Consensus 79 ~G~~-W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 79 FGAL-WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHH-HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6654 478999999999999987654 4556888899999999998744 234688999999999999985444
Q ss_pred C
Q 022317 261 D 261 (299)
Q Consensus 261 ~ 261 (299)
+
T Consensus 158 k 158 (345)
T PRK13499 158 K 158 (345)
T ss_pred c
Confidence 3
No 73
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.72 E-value=6.1e-05 Score=63.87 Aligned_cols=132 Identities=9% Similarity=-0.028 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317 117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 196 (299)
Q Consensus 117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 196 (299)
|++.++.|+++|+...+=.||.... |++.+.++++....+..+.+.++.+. +.+ ..+.++|...-+.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~---p~f--------~p~amlgG~lW~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGF---PPF--------YPWAMLGGALWAT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCC---Ccc--------eeHHHhhhhhhhc
Confidence 6788999999999999988875544 55766666665555555555443332 111 1111122111233
Q ss_pred HHHHHHHHHhccCceEEeecchh-HHHHHHHHHHH-Hhccc-----chhhHHHHHHHHHhhhhheeeccccC
Q 022317 197 TYYIQGIVMKDRGPVFVAAFSPL-CMVIVAIMSTI-ILAEQ-----MYLGRIIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 197 ~~~~~~~al~~~~~~~~s~~~~l-~pv~~~l~~~~-~~~e~-----~t~~~~~G~~lii~G~~l~~~~~~~~ 261 (299)
+..+-.-+++.++-...-.+-.. +-+.+-..+-+ +||++ -.+..++|++++++|..++..-|.+.
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 44444444555444333333222 33444444433 45442 25788999999999999888765554
No 74
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.66 E-value=0.00046 Score=50.47 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhccCceE-EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 193 CSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~-~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
+.++++++...++|+++... .++-..+.-+.+.+.++++++|++++.+++|+.++++|++..+.
T Consensus 38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 44678889999999988754 45566688899999999999999999999999999999998754
No 75
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.61 E-value=0.00032 Score=52.56 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhh
Q 022317 11 LLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 85 (299)
Q Consensus 11 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~ 85 (299)
+..+..++.+++++..++++.|.+.+-.+ ..+.-+.+++++.++++|++++.+ ++|+.+.++|++.+-+
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence 34555568999999999999999998866 579999999999999999999997 9999999999988763
No 76
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.60 E-value=0.00077 Score=49.58 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhccCceE-EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317 193 CSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~-~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
+..+++++...++|+++... .++-..+.-+.+.+.++++++|++++.+++|+.+++.|++...
T Consensus 44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 34678889999999998764 4556668888999999999999999999999999999998764
No 77
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.58 E-value=0.0077 Score=52.83 Aligned_cols=241 Identities=14% Similarity=0.139 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHhhHHHHHHHHHHHHhhhccc-ccccccchhhhHHHHHHhhh
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA-AMYNILPAITFLMAWIIRLENVN-LKSIRSLAKVIGTLATVAGA 80 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~p~~~~lla~~~~~e~~~-~~~~~~~~k~~~~~l~~~Gv 80 (299)
...+....+.|++- .++...|=.+++|++.+... +...+..++..++-.++.++--. ..+.-+..-++|++++++|+
T Consensus 70 ~~~l~~~~l~G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGI 148 (344)
T PF06379_consen 70 ASTLFWTFLFGVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGI 148 (344)
T ss_pred hhHHHHHHHHHHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHH
Confidence 34566777888886 89999999999999998876 66778878887776665332100 00001122389999999999
Q ss_pred hhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH------hhcC-chh----HHH
Q 022317 81 MVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITL------KAYP-AEL----SLT 149 (299)
Q Consensus 81 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~------~~~~-~~~----~~~ 149 (299)
.+........+. + . .++..+.+..+|++.++++++..|..++-...-. .... +|+ ...
T Consensus 149 ai~g~AG~~Ke~--------~--~-~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~ 217 (344)
T PF06379_consen 149 AICGKAGSMKEK--------E--L-GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVY 217 (344)
T ss_pred HHHhHHHHhhhh--------h--h-ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchh
Confidence 998743222111 0 0 0113345677899999999999998887654211 0100 111 122
Q ss_pred HHHHHHHHHHHHHHHHHHhc--cccc---ceeecch---hHHHHHHHHHHHHHHHHHHHHHHHHhccCce----EEeecc
Q 022317 150 AWICFFGTVEGTLAALIMER--GKAS---IWAIHWD---TKLVASVYSGIICSGLTYYIQGIVMKDRGPV----FVAAFS 217 (299)
Q Consensus 150 ~~~~~~~~v~~~~~~~~~~~--~~~~---~~~~~~~---~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~----~~s~~~ 217 (299)
...+.-+.+.-+...+.... .+.+ +.....+ .+....+..|.+ -..++++|..+-.+.++. .-.+.+
T Consensus 218 vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~l-Wy~qfffYg~G~s~lg~~~~~~sW~i~m 296 (344)
T PF06379_consen 218 VVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVL-WYSQFFFYGMGESKLGASGPFSSWAIHM 296 (344)
T ss_pred hhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccccHHHHHHH
Confidence 23333444444444443321 1111 1111111 223333334443 355666777777777643 344566
Q ss_pred hhHHHHHHHHHHHHhcc------cchhhHHHHHHHHHhhhhheeec
Q 022317 218 PLCMVIVAIMSTIILAE------QMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 218 ~l~pv~~~l~~~~~~~e------~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
.+..+++-+++. +++| +.-..-+.|+++++.++.+.-+.
T Consensus 297 a~~vl~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 297 ALIVLFSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred HHHHHHHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 677777777775 4677 33345688999888888776543
No 78
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.55 E-value=0.00056 Score=50.53 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhh
Q 022317 12 LGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 85 (299)
Q Consensus 12 ~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~ 85 (299)
..+..+.+.+.++..++++.|.+.+-.+ ..+.-+.++++++++++|++++.+ ++|+.+.++|++.+-+
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 4455668899999999999999998866 668999999999999999999997 9999999999999863
No 79
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.0011 Score=51.30 Aligned_cols=139 Identities=13% Similarity=0.068 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHH
Q 022317 115 IKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICS 194 (299)
Q Consensus 115 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~ 194 (299)
.+..++.++++++-....-.+.+..+..++|.......+..+.+.+....++.+. ...+....+..||. ...|+++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~--~~~~a~~~~~pwW~-~~GG~lG- 79 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG--HPGLAAVASAPWWA-WIGGLLG- 79 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhccCCchHH-HHccchh-
Confidence 4678889999999999999999988888788999999999999988888887443 33333222223333 2233332
Q ss_pred HHHHHHHHHHHhccCce-EEeecchhHHHHHHHHHHHHhc----ccchhhHHHHHHHHHhhhhheeec
Q 022317 195 GLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILA----EQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 195 ~~~~~~~~~al~~~~~~-~~s~~~~l~pv~~~l~~~~~~~----e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
.+-.+.......+.+++ +......-+-+.+++++-+=+. .++++.+++|++++++|+++..+.
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 33344455666676665 4555556667777777766443 578999999999999996665543
No 80
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.50 E-value=0.00041 Score=59.02 Aligned_cols=79 Identities=13% Similarity=0.254 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccC
Q 022317 182 KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 182 ~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~ 261 (299)
+.+....-+++ ..+...+.+.++++.+|++..++..++.++++++++++++.+++..||+++.++++|+.+........
T Consensus 16 ~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 16 DTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 34444444443 56788889999999999999999999999999999999999999999999999999999988765443
No 81
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00026 Score=51.29 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhccCce-EEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 194 SGLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 194 ~~~~~~~~~~al~~~~~~-~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
..++|.+...++|+++.. -.++-..+..+.+.+.++++|+|++++.+++|+.+++.|++.....
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 467888899999998865 3466777888999999999999999999999999999999987654
No 82
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.48 E-value=0.00069 Score=49.84 Aligned_cols=65 Identities=22% Similarity=0.188 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHH-HHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 14 LLEPVIDQNLYFIGMKYTTATFAAA-MYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 14 ~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
+..+.+++.+...++++.|.+.+-. -...-.+.+.+.++++++|++++.+ ++|+.+.+.|++.+-
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 4445888999999999999999875 4668889999999999999999997 999999999998753
No 83
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00092 Score=48.49 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHH-HHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 11 LLGLLEPVIDQNLYFIGMKYTTATFAA-AMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 11 ~~g~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
+..++++.+++.+...++++.|.+.+- +-...-.+.+++.++++++|+++..+ ++++.+.++|++.+-
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~Lk 102 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHhh
Confidence 334455688999999999999999977 55779999999999999999999996 999999999998875
No 84
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.43 E-value=0.0007 Score=53.11 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
+.+..++..|++. ...+.+.+..++++++...+++.....+++.++++++++|+++..+ +.|+.++++|+++
T Consensus 79 ~~~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 79 NFIFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhe
Confidence 4456666677776 8999999999999999999999999999999999999999999998 9999999999865
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.42 E-value=0.00094 Score=47.87 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhccCceEE-eecchhHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 022317 193 CSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIII 247 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~~-s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~li 247 (299)
+.+++++++..++|+.+.+.+ .+...+..+.+.+.+.+++||++++.+++|+.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 456788999999999998877 4555689999999999999999999999999875
No 86
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.39 E-value=0.0038 Score=53.41 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecc-hhHHHHHHHHHHHHhcccchhhHH----HHHHHHHhhhhhee
Q 022317 181 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVV 255 (299)
Q Consensus 181 ~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~-~l~pv~~~l~~~~~~~e~~t~~~~----~G~~lii~G~~l~~ 255 (299)
..++.-+..|++ -.+++...+.+.++.+.+++..+. .++-+.+.++++++|||.-+..++ .+++++++|+.+..
T Consensus 43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 445555556664 588999999999999999998887 677778999999999998775554 47788899999988
Q ss_pred eccccCC
Q 022317 256 WGKSKDH 262 (299)
Q Consensus 256 ~~~~~~~ 262 (299)
+++++++
T Consensus 122 ~~~~~~~ 128 (269)
T PF06800_consen 122 YQDKKSD 128 (269)
T ss_pred ccccccc
Confidence 7655443
No 87
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.38 E-value=0.0014 Score=47.91 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 14 LLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 14 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
+.++..++.+...+++..|.+.+-.+ ...-.+.+.+.+.++++|++++.+ ++|+.+.++|++.+-
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhhh
Confidence 45568899999999999999998754 669999999999999999999997 999999999998875
No 88
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.84 E-value=0.0056 Score=43.85 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHH-HHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHH
Q 022317 13 GLLEPVIDQNLYFIGMKYTTATFAAA-MYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLA 75 (299)
Q Consensus 13 g~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l 75 (299)
.+.....++.++..++++.|.+.+-. ...+..+.+.+.+.++++|+++..+ +.|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence 34456889999999999999999875 5679999999999999999999997 988865
No 89
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.78 E-value=0.081 Score=46.64 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcC---chhHHHHHHHHHHHHHHHHHHHHHhcc--cccceee-----cchhHHHH
Q 022317 116 KGALMITAGCFSWSFFIILQAITLKAYP---AELSLTAWICFFGTVEGTLAALIMERG--KASIWAI-----HWDTKLVA 185 (299)
Q Consensus 116 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~ 185 (299)
.-.+..+...+-++......|...++.+ .|.+..+..-++-.+++....+..+.. +...... ..+.+.+.
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 4445555556666666666665444331 245555555566666666555543210 0010011 11112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 186 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 186 l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
+..-++ ...+.+.+++.++.+.+|++..+..-+....++++..++++++++.+||...++...|+.+.+..
T Consensus 95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 222222 34566678999999999999999999999999999999999999999999999999999999843
No 90
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0066 Score=50.82 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
+++-+..-+..|++..++.+.+=+.+++..|...-+++.++.|.+.++.++++++|.++..| |.++...+.+.+
T Consensus 205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsa 278 (292)
T COG5006 205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASA 278 (292)
T ss_pred ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHh
Confidence 45556667788899999999999999999999999999999999999999999999999998 999988887776
Q ss_pred hhh
Q 022317 82 VMT 84 (299)
Q Consensus 82 ~i~ 84 (299)
-.+
T Consensus 279 G~~ 281 (292)
T COG5006 279 GST 281 (292)
T ss_pred ccc
Confidence 544
No 91
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.60 E-value=0.013 Score=43.34 Aligned_cols=109 Identities=9% Similarity=0.066 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHH
Q 022317 123 AGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQG 202 (299)
Q Consensus 123 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~ 202 (299)
+-+++|+..+.+.||..+..++.-.- . +..-.... ++.. | ..+. .+.....+-..|+
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~~~-----Ll~n------~-----~y~i-----pf~lNq~GSv~f~ 59 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEIKF-----LLLN------P-----KYII-----PFLLNQSGSVLFF 59 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHHHH-----HHHh------H-----HHHH-----HHHHHHHHHHHHH
Confidence 45789999999999988765432221 1 21111111 1111 0 1111 1222344566788
Q ss_pred HHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhe
Q 022317 203 IVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 254 (299)
Q Consensus 203 ~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~ 254 (299)
+.+.+.+-+.+..+ ..+.=+++++.++++.+|..++..++|+.+++.|+.+.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99999999988888 49999999999988777788889999999999998764
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.0014 Score=54.54 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHH
Q 022317 117 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 196 (299)
Q Consensus 117 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~ 196 (299)
+++.+++=++.|+.......|... +|.+-+.-..+-+.++.+.+.++ .. +..+...+..-+..|.+ -.+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT~GALifaiiv~~~-~~------p~~T~~~~iv~~isG~~-Ws~ 71 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTTLGALIFAIIVFLF-VS------PELTLTIFIVGFISGAF-WSF 71 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhccHHHHHHHHHHhee-ec------CccchhhHHHHHHhhhH-hhh
Confidence 567888899999988877555333 34443333333333333333332 21 11122334444455554 478
Q ss_pred HHHHHHHHHhccCceEEeecc-hhHHHHHHHHHHHHhcccchhhHH----HHHHHHHhhhhheeeccccC
Q 022317 197 TYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 197 ~~~~~~~al~~~~~~~~s~~~-~l~pv~~~l~~~~~~~e~~t~~~~----~G~~lii~G~~l~~~~~~~~ 261 (299)
++...+.++++.+.+.+..+. ..+-+-+-+++++.|||..++.++ +++++++.|+.+..+.++.+
T Consensus 72 GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n 141 (288)
T COG4975 72 GQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN 141 (288)
T ss_pred hhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc
Confidence 899999999999999888765 467788889999999999887663 46678888999888765433
No 93
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.47 E-value=0.0066 Score=53.60 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccC
Q 022317 195 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 195 ~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~ 261 (299)
.++.+.++.|+.+.+++..+++....-+++..++.++.+|++|+.+.++..+-+.|+++....+.++
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 6788999999999999999999999999999999999999999999999999999999999876554
No 94
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.46 E-value=0.0053 Score=45.30 Aligned_cols=65 Identities=17% Similarity=0.300 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317 13 GLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 83 (299)
Q Consensus 13 g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i 83 (299)
.++.+-.+...|++.+...+.+.+..+ +++.-++|++.++++.+|..+++. ++|+.+.++|+.+.
T Consensus 47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeeee
Confidence 455568889999999999999999966 689999999999888777778776 99999999998764
No 95
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.44 E-value=0.0019 Score=56.75 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=92.7
Q ss_pred HHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022317 130 FFIILQAITLK--AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKD 207 (299)
Q Consensus 130 ~~~v~~k~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~ 207 (299)
..+++.|+..+ +.+-|+.++...+..+.+.....-.+... + ..+..+...+..++-+|++. .++..+-+.++++
T Consensus 31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~-~--~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~ 106 (316)
T KOG1441|consen 31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLV-P--PSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSY 106 (316)
T ss_pred eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCC-C--CCccccccchHHHHHHHHHH-HHHHHhcchhhhc
Confidence 45577888888 66678888888777777766666554332 1 11222334567777777754 7888999999999
Q ss_pred cCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 208 RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 208 ~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
.+.+..-.+-.++|+++++++.++.+|+.+...+.-+..++.|+.+...
T Consensus 107 v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~ 155 (316)
T KOG1441|consen 107 VPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASV 155 (316)
T ss_pred cchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeee
Confidence 9999999999999999999999999999988777766666666666554
No 96
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.007 Score=52.41 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=92.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHH
Q 022317 111 THNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSG 190 (299)
Q Consensus 111 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (299)
......|.++++.+.+..+...++.||..++... .. . ... ...........| +.|
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~----~~--------------~-ra~--~gg~~yl~~~~W----w~G 70 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA----SG--------------L-RAG--EGGYGYLKEPLW----WAG 70 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh----hc--------------c-ccc--CCCcchhhhHHH----HHH
Confidence 3456789999999999999999998887766421 00 0 000 001111111122 245
Q ss_pred HHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecccc
Q 022317 191 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 260 (299)
Q Consensus 191 i~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~ 260 (299)
++...++-..-+.|....+++.++.+..++.+...+++..+++|++++...+|+.+.++|..+.+....+
T Consensus 71 ~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~ 140 (335)
T KOG2922|consen 71 MLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK 140 (335)
T ss_pred HHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence 5566677777777888889999999999999999999999999999999999999999998888765433
No 97
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=95.88 E-value=0.033 Score=48.97 Aligned_cols=147 Identities=14% Similarity=0.096 Sum_probs=91.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH-HHhccccc-ceeecchhHHHHHHHHH
Q 022317 113 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAAL-IMERGKAS-IWAIHWDTKLVASVYSG 190 (299)
Q Consensus 113 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~~g 190 (299)
....|+++..+++++-+.+.+=.|| .|+. + ++.......+-..+..|... ...-++.. .....+...++...+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kk-vk~W-s-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKK-VKGW-S-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhh-cCCc-c-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 4578999999999999999998887 4444 2 44444433333333333332 22221222 11222334555666677
Q ss_pred HHHHHHHHHHHHHHHhccCce-EEeecchhHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHhhhhheeeccccCC
Q 022317 191 IICSGLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILA-------EQMYLGRIIGAIIIIGGLYLVVWGKSKDH 262 (299)
Q Consensus 191 i~~~~~~~~~~~~al~~~~~~-~~s~~~~l~pv~~~l~~~~~~~-------e~~t~~~~~G~~lii~G~~l~~~~~~~~~ 262 (299)
++- +++-..|-.++||++.+ -.++...+.-++..++-.++.+ ++-....++|.++.++|+.+..+...+|+
T Consensus 81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 653 77888899999999865 4455555666666666555433 22345779999999999999998755444
Q ss_pred C
Q 022317 263 K 263 (299)
Q Consensus 263 ~ 263 (299)
+
T Consensus 160 ~ 160 (344)
T PF06379_consen 160 K 160 (344)
T ss_pred h
Confidence 3
No 98
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.21 Score=43.46 Aligned_cols=134 Identities=11% Similarity=0.057 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH--HHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHH
Q 022317 118 ALMITAGCFSWSFFIILQAITLKAYPAELSLTA--WICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 195 (299)
Q Consensus 118 ~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 195 (299)
...++.=+++..+-.+..|.....++-|..+.. +|.+.+.+.....-...-- +...........|..+-.+= .
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv-~~~~l~~~~~kk~~P~~~lf----~ 88 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLV-NFRPLDLRTAKKWFPVSLLF----V 88 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcee-ecCCcChHHHHHHccHHHHH----H
Confidence 344444455555566777777777765565555 8888877776665543211 22333233333343322111 1
Q ss_pred HHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 196 ~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
...+.-..++++++.....++-.+.|+++++....+++.+++...+.....+++|......
T Consensus 89 ~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 89 GMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred HHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 2233346789999999999999999999999999999999999999999999999877664
No 99
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.44 E-value=0.01 Score=47.78 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317 196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 196 ~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~ 258 (299)
.+.+.|..|+++++|+.++.+..-+..+..++++++++|++...+++..++.+.|++++.+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 467889999999999999999999999999999999999999999999999999999988753
No 100
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=95.44 E-value=0.29 Score=42.39 Aligned_cols=127 Identities=9% Similarity=0.085 Sum_probs=84.3
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceE
Q 022317 133 ILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVF 212 (299)
Q Consensus 133 v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~ 212 (299)
.+.++..+.++-|+..+...+.+-.......-.+.+..........++....--+.-..+++++=..+.++++++++.+.
T Consensus 33 f~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSl 112 (349)
T KOG1443|consen 33 FYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSL 112 (349)
T ss_pred HHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeee
Confidence 34444445555567766666655444333333333321111111112222222222233356777788999999999999
Q ss_pred EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317 213 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 213 ~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~ 259 (299)
.++.-...+++..+++.++-=|++++.-..-..++.+|+.+..+++.
T Consensus 113 YTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 113 YTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred eeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 99999999999999999988899999999999999999999987543
No 101
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=93.85 E-value=0.058 Score=45.18 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 12 LGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 12 ~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
..+.. +++..+..+.++|.++..-+....+.++++.+++.++++|+++..+ +.|+.+.+.|+.+
T Consensus 158 ~~~~~-a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~l 221 (222)
T TIGR00803 158 VGLLN-VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATFL 221 (222)
T ss_pred HHHHH-HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeEe
Confidence 33443 7778888899999999999999999999999999999999999998 9999999888653
No 102
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.83 E-value=1.4 Score=38.30 Aligned_cols=139 Identities=12% Similarity=0.002 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh--------cCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHH
Q 022317 116 KGALMITAGCFSWSFFIILQAITLKA--------YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASV 187 (299)
Q Consensus 116 ~G~~~~l~a~~~~a~~~v~~k~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (299)
...++...--..+-.+.++++|+.++ +.++....+.+-+.+.++...... .. ... ......|+..-
T Consensus 14 ~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~--~~-k~~---~~~~apl~~y~ 87 (327)
T KOG1581|consen 14 LLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLK--WW-KKE---LSGVAPLYKYS 87 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHh--cc-ccc---CCCCCchhHHh
Confidence 34444444445555677888876653 233455566666666665532222 11 111 11123344444
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccC
Q 022317 188 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 188 ~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~ 261 (299)
+.++ ...++-.+.+.|+|+++=-+..+.=....+-+++++.++.+.+.++.+.+-..+|-.|+.+....+..+
T Consensus 88 ~is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 88 LISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 4444 345666778899999998777788888888899999999999999999999999999999998875444
No 103
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.05 E-value=0.19 Score=41.85 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317 4 AILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 83 (299)
Q Consensus 4 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i 83 (299)
..|+-+.+.++.+ ++++.+.|.-+.+-++-.-+++..+--.|+.+.+.++++.+++.+| |+|..+.+.+...-
T Consensus 239 ~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 239 YVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTAD 311 (337)
T ss_pred HHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhH
Confidence 4567788888887 8999999999999999888899999999999999999999999998 99999999998765
Q ss_pred h
Q 022317 84 T 84 (299)
Q Consensus 84 ~ 84 (299)
.
T Consensus 312 ~ 312 (337)
T KOG1580|consen 312 V 312 (337)
T ss_pred h
Confidence 4
No 104
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=91.85 E-value=0.12 Score=44.63 Aligned_cols=132 Identities=10% Similarity=0.019 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHH-hccc---cc------ceeecchhHHHHHHHHHH
Q 022317 122 TAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIM-ERGK---AS------IWAIHWDTKLVASVYSGI 191 (299)
Q Consensus 122 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~---~~------~~~~~~~~~~~~l~~~gi 191 (299)
+++.+||+.+...+|-.-++... .+..+|-+.++.++...+..+. +... .. +....++..+ ...+.|.
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv-~~A~aGG 79 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSV-LFAMAGG 79 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHH-HHHHHhh
Confidence 56789999999888876665432 2346666666555444444332 2111 11 1111111222 2233444
Q ss_pred HHHHHHHHHHHHHHhccCceEEeecc-hhHHHHHHHHHHHHhcccch--hhHHHHHHHHHhhhhheee
Q 022317 192 ICSGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMY--LGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 192 ~~~~~~~~~~~~al~~~~~~~~s~~~-~l~pv~~~l~~~~~~~e~~t--~~~~~G~~lii~G~~l~~~ 256 (299)
+...++..+..+++...+-+.+-.+. .+..++.+.+.++ +..+.+ ..-+.|..++++++++-..
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 44577888989998888866555443 2333444555554 344443 2556688888888777553
No 105
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=91.20 E-value=0.79 Score=35.32 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHH----HhhhcccccccccchhhhHHHHHHhhhh
Q 022317 7 TKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWI----IRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~----~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
+++.+-|+++ +..-.+........+++.+..+ ..-+-+...++.++ .-++++++++ .+|+++.++|+.
T Consensus 65 ~w~~lGG~lG-~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r------~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 65 WWAYLGGLLG-VFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRR------ILGLALMIAGVI 137 (138)
T ss_pred hHHhccHHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHH------HHHHHHHHHHHh
Confidence 4555688887 8999999999999999998855 45555566666664 2567777775 999999999986
Q ss_pred h
Q 022317 82 V 82 (299)
Q Consensus 82 ~ 82 (299)
+
T Consensus 138 L 138 (138)
T PF04657_consen 138 L 138 (138)
T ss_pred C
Confidence 4
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=90.45 E-value=0.61 Score=39.98 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 195 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 195 ~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
..+-.+.+.++..++++...++.....+++.+++.-+++.+++..+|+|+..+.+|++..-..
T Consensus 97 i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 97 IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 445566788888889999999999999999999999999999999999999999999887754
No 107
>PRK02237 hypothetical protein; Provisional
Probab=89.55 E-value=1.4 Score=32.06 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=38.8
Q ss_pred EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317 213 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 213 ~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~ 258 (299)
.+.+...-.+.++++.+.+-+.+|+..+++|..++++|+.++.+..
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3455666677888999999999999999999999999998887654
No 108
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=88.93 E-value=5.3 Score=34.14 Aligned_cols=130 Identities=12% Similarity=0.046 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHH-HH-HhhhcccccccccchhhhHHHHHHhhhhhhhhcc
Q 022317 10 LLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMA-WI-IRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIK 87 (299)
Q Consensus 10 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla-~~-~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~ 87 (299)
++-|.+ .+.++.+-.-.++..+.+.+.++.++.-+++--.. .+ +++++..... ..+..++|+++.++|..+....+
T Consensus 59 mlgG~l-W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 59 MLGGAL-WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred Hhhhhh-hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeec
Confidence 344454 48888888899999999999988777555544332 22 2333322211 11233888888888888777555
Q ss_pred CCccchhhc------cCCCcC----C---CCCCCC-----CccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022317 88 GPILELFWT------KGAENH----G---HGSSGT-----TTHNSIKGALMITAGCFSWSFFIILQAITLKA 141 (299)
Q Consensus 88 ~~~~~~~~~------~~~~~~----~---~~~~~~-----~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~ 141 (299)
.+..+.... ..+... + +++++. ...+...|..+++++++.|+...+=.....++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 137 SEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred CCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 444111100 000000 0 001111 11246789999999999999887766665444
No 109
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=88.79 E-value=0.13 Score=43.86 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=0.0
Q ss_pred hhcccchhHHHHHHhhHHHHHHHHHHHH-hhhcc-cccccccchhhhHHHHHHhhhh
Q 022317 27 GMKYTTATFAAAMYNILPAITFLMAWII-RLENV-NLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 27 al~~~~~~~~~~i~~~~p~~~~lla~~~-~~e~~-~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
-++-.+-+..+++++.+.+.+.++-.++ +|+|+ -+.- ++|+++.++-..
T Consensus 43 imsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLG------lLCiilimi~lL 93 (381)
T PF05297_consen 43 IMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLG------LLCIILIMIVLL 93 (381)
T ss_dssp ---------------------------------------------------------
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcch------HHHHHHHHHHHH
Confidence 3444444445566665555544444333 45544 3332 555555444433
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=88.56 E-value=1.5 Score=31.77 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=38.7
Q ss_pred eecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317 214 AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 214 s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~ 259 (299)
+.+...-.+.++++++.+-+++|+..+++|..++++|+.++.+..|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 4455566677889999999999999999999999999999887643
No 111
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.78 E-value=1.7 Score=37.33 Aligned_cols=112 Identities=16% Similarity=0.129 Sum_probs=78.2
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHhcc-c---cccee--ecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEe
Q 022317 141 AYPAELSLTAWICFFGTVEGTLAALIMERG-K---ASIWA--IHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVA 214 (299)
Q Consensus 141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~---~~~~~--~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s 214 (299)
+.+.|...+.++++....+...+......- . .++.+ .....+... +.-+ ...+..+-++++++.+.+..-
T Consensus 57 ~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlp--lsvV--fi~mI~fnnlcL~yVgVaFYy 132 (347)
T KOG1442|consen 57 ILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLP--LSVV--FILMISFNNLCLKYVGVAFYY 132 (347)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcc--hhhe--eeeehhccceehhhcceEEEE
Confidence 345688889999988888777776654321 1 11111 111111111 1111 123345578899999999999
Q ss_pred ecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 215 AFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 215 ~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
+-..+..++++++++++++++-+..-..++.+|+.|..+-..
T Consensus 133 vgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvd 174 (347)
T KOG1442|consen 133 VGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVD 174 (347)
T ss_pred eccchhhhHHHHhHHhhcccccccccceeehhheehheeccc
Confidence 999999999999999999999999999999999999877654
No 112
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=84.22 E-value=1.8 Score=31.20 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHH-HHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 8 KLLLLGLLEPVIDQNLYFIGMKYTTATFAAA-MYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 8 ~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
.+.+.=+++ --+..+||+-+++.+.+.+.. -.++.-.|+++.+..+..|-..++. +.|..+.++|+.+.+
T Consensus 54 ~Y~iPFllN-qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a------~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 54 EYLIPFLLN-QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLA------LLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHH-HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhcccccccee------ehhhhHHhhhhhhee
Confidence 334444444 556678899999999999984 4677888898888766444445555 899999999987653
No 113
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=83.15 E-value=28 Score=31.56 Aligned_cols=18 Identities=17% Similarity=-0.101 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022317 183 LVASVYSGIICSGLTYYI 200 (299)
Q Consensus 183 ~~~l~~~gi~~~~~~~~~ 200 (299)
++.+....++...+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 62 LWFIPVFAFIIFILGLLL 79 (385)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333444433
No 114
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=82.65 E-value=1.9 Score=31.13 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=26.4
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317 225 AIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 225 ~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
+.++.++++|++++..+.|.++++.++.+..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 4567789999999999999999998877653
No 115
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=82.06 E-value=5.6 Score=28.68 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=39.5
Q ss_pred EeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317 213 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 213 ~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~ 259 (299)
.+.+..+-.+.++++.+++=+.+|+..++.|..+.++|+.++.+..+
T Consensus 61 YAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 45566677788888899888999999999999999999988887643
No 116
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=81.81 E-value=0.35 Score=40.83 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHH
Q 022317 114 SIKGALMITAGCFSWSFFIILQAITLKA-YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 192 (299)
Q Consensus 114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~ 192 (299)
.+.|..+.-.=.+|-...........++ .+.|..-++..+..-+++-.+...+..+ ... ..|..-+.++++
T Consensus 16 ~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-~~~-------~~~~hYilla~~ 87 (336)
T KOG2766|consen 16 TLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK-YIK-------AKWRHYILLAFV 87 (336)
T ss_pred hhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH-HHH-------HHHHHhhheeEE
Confidence 3444444333333333333444444444 3345655666665555555555554321 111 112222333332
Q ss_pred HHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 193 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 193 ~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
-+=++++...|.++++-+.+.++-.-..+...+++|++++.+-.++++.|.++.++|+.+....
T Consensus 88 -DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 88 -DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred -eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 2445666678888888888888888889999999999999999999999999999999998875
No 117
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=80.58 E-value=45 Score=31.93 Aligned_cols=16 Identities=6% Similarity=-0.145 Sum_probs=8.8
Q ss_pred ecchhHHHHHHHHHHH
Q 022317 215 AFSPLCMVIVAIMSTI 230 (299)
Q Consensus 215 ~~~~l~pv~~~l~~~~ 230 (299)
......|+-+.+.|.+
T Consensus 351 ~~~g~~~lGsll~G~l 366 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444456666666654
No 118
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.72 E-value=4.2 Score=28.92 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=27.7
Q ss_pred HHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 225 AIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 225 ~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
+.++.+.++|++.+..+.|..++..|+.+..+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 45688899999999999999999999887653
No 119
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=75.17 E-value=16 Score=31.48 Aligned_cols=78 Identities=18% Similarity=0.168 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
+|.....++.++.+ .++...-..=++.-++..++.+...--.+|.+++++++.++++... .-+..+.+.|+.+
T Consensus 257 ~~tyGy~~~~s~~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy------~~~gllv~lgI~L 329 (367)
T KOG1582|consen 257 VRTYGYAFLFSLAG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYL 329 (367)
T ss_pred HhHHHHHHHHHHHh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHh
Confidence 44555555555555 4444443344555688888888888899999999999999999987 8888888999988
Q ss_pred hhhcc
Q 022317 83 MTLIK 87 (299)
Q Consensus 83 i~~~~ 87 (299)
=...+
T Consensus 330 n~ysk 334 (367)
T KOG1582|consen 330 NMYSK 334 (367)
T ss_pred hcccC
Confidence 66444
No 120
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=73.83 E-value=14 Score=26.88 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=44.9
Q ss_pred HHHHHHHHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhhee
Q 022317 197 TYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 197 ~~~~~~~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~ 255 (299)
+-.+|++-+.+.+-+.+..+ ..+.-.++.+.+..+-.|......+.|..++++|+.+..
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 45567778888887665544 556778889999875555677888999999999988764
No 121
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=73.66 E-value=20 Score=29.99 Aligned_cols=106 Identities=10% Similarity=0.167 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHH
Q 022317 146 LSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVA 225 (299)
Q Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~ 225 (299)
+.+.+.|.+.+.+.+.++-...- ..+.......|..+-++-. ...+.-..++++.+....++.-.+..++.+
T Consensus 38 flll~vQSlvcvv~l~iLk~l~~----~~fR~t~aK~WfpiSfLLv----~MIyt~SKsLqyL~vpiYTiFKNltII~iA 109 (309)
T COG5070 38 FLLLAVQSLVCVVGLLILKFLRL----VEFRLTKAKKWFPISFLLV----VMIYTSSKSLQYLAVPIYTIFKNLTIILIA 109 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhH----hheehhhhhhhcCHHHHHH----HHHHhcccceeeeeeeHHHHhccceeehhH
Confidence 55556666665555544433221 1222222234444333221 122334578889999999999999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHHhhhhheeeccc
Q 022317 226 IMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 226 l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~ 259 (299)
.....+||.+++.......++++...+...|+..
T Consensus 110 ygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~ 143 (309)
T COG5070 110 YGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQ 143 (309)
T ss_pred hhHHHHhcCccchhhHHHHHHHHHHHHHhccchh
Confidence 9999999999999999999999999888887644
No 122
>PRK02237 hypothetical protein; Provisional
Probab=71.83 E-value=34 Score=24.99 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=35.3
Q ss_pred hcc-cchhHHHHHHh-hHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 28 MKY-TTATFAAAMYN-ILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 28 l~~-~~~~~~~~i~~-~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
+|- ...+.+-..+. ...+...+-.+.+-++|+++.+ ++|..++++|+.++.
T Consensus 52 l~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D------~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 52 LQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWD------WIGAAICLVGMAVIM 104 (109)
T ss_pred cCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhH------HHhHHHHHHhHHHhe
Confidence 443 33444443333 3334444667788899999999 999999999998875
No 123
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=69.29 E-value=62 Score=26.53 Aligned_cols=33 Identities=3% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHHHHHhcccchhhHHHHHHHHH--hhhhheeec
Q 022317 225 AIMSTIILAEQMYLGRIIGAIIII--GGLYLVVWG 257 (299)
Q Consensus 225 ~l~~~~~~~e~~t~~~~~G~~lii--~G~~l~~~~ 257 (299)
--+|..++.+-.=+....|..+.+ +|.+...++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345777788888888888887765 455555543
No 124
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=66.35 E-value=1.8 Score=37.16 Aligned_cols=64 Identities=6% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCceEEeecchhHHHH----HHHHHHHHhcccchhhHHHHHHHHHhhhhheeecc
Q 022317 195 GLTYYIQGIVMKDRGPVFVAAFSPLCMVI----VAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 195 ~~~~~~~~~al~~~~~~~~s~~~~l~pv~----~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~ 258 (299)
++...+|.+.+++.+++.-+++.+.--++ -.++++++-+..+|...=+=-.+.++++++..+..
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H 186 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVH 186 (381)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556667788889988766554432222 22223222222334322222245556666655543
No 125
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=65.19 E-value=1.6e+02 Score=29.74 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=30.6
Q ss_pred hHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317 34 TFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 83 (299)
Q Consensus 34 ~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i 83 (299)
+.+.++..++|.-.+.++.+...+|.+.+. +.+.+-.+.|.+-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~------~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKA------FFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchH------HHHHHHHHHHHHHh
Confidence 677888999999999999888766643332 55555555565543
No 126
>PRK12650 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=64.46 E-value=1.8e+02 Score=30.20 Aligned_cols=38 Identities=8% Similarity=0.201 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhh
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNI 42 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~ 42 (299)
+++....+..|..+...... |.-+.--+.+.+++..-+
T Consensus 619 ~~rl~av~~~g~~G~~~al~--f~~~~APDvAlTq~~Vet 656 (962)
T PRK12650 619 RTRLAAVVLVGVVGVGVTLQ--MLTLGAPDVALTQLLVEA 656 (962)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhCCcHHHHHHHHHHH
Confidence 45556666666666433333 323333345555554444
No 127
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=63.94 E-value=13 Score=28.35 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHhhhhhee
Q 022317 238 LGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 238 ~~~~~G~~lii~G~~l~~ 255 (299)
...++|..+.+.|++...
T Consensus 87 ~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 87 LSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455667777777766555
No 128
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=62.37 E-value=19 Score=31.18 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhc-cCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccCCCC
Q 022317 196 LTYYIQGIVMKD-RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKS 264 (299)
Q Consensus 196 ~~~~~~~~al~~-~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~~~~ 264 (299)
....+-+++++. ++-..--++..-.++.++++++++.+.+-+..|+....++-+|+++....+.++.+.
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 345567788876 566677888899999999999999999999999999999999999999887666443
No 129
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.98 E-value=36 Score=26.60 Aligned_cols=71 Identities=17% Similarity=0.104 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHH-HHHhhHHHHHHHHHHHHh----hhcccccccccchhhhHHHHHHhhh
Q 022317 6 LTKLLLLGLLEPVIDQNLYFIGMKYTTATFAA-AMYNILPAITFLMAWIIR----LENVNLKSIRSLAKVIGTLATVAGA 80 (299)
Q Consensus 6 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~p~~~~lla~~~~----~e~~~~~~~~~~~k~~~~~l~~~Gv 80 (299)
.++..+-|+++ +.+-..-.......+++.+. ++..-+-+...++.++=. +++++.. |+.|+++.++|+
T Consensus 69 pwW~~~GG~lG-a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gi 141 (150)
T COG3238 69 PWWAWIGGLLG-AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGI 141 (150)
T ss_pred chHHHHccchh-hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHH
Confidence 45666777777 77777777777888777766 445556666666665432 3444444 599999999995
Q ss_pred hhh
Q 022317 81 MVM 83 (299)
Q Consensus 81 ~~i 83 (299)
.++
T Consensus 142 l~~ 144 (150)
T COG3238 142 LLA 144 (150)
T ss_pred HHh
Confidence 543
No 130
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=59.51 E-value=99 Score=25.42 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 022317 116 KGALMITAGCFSWSFFIILQAIT 138 (299)
Q Consensus 116 ~G~~~~l~a~~~~a~~~v~~k~~ 138 (299)
-+....++++++++++..+.||+
T Consensus 179 ~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777788899999888776664
No 131
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=59.10 E-value=40 Score=30.30 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHhhhhheeeccc
Q 022317 237 YLGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 237 t~~~~~G~~lii~G~~l~~~~~~ 259 (299)
.+.+++...++++.+.+..+.++
T Consensus 287 ~~~~ii~g~lll~vl~~~~~~~~ 309 (344)
T PRK15432 287 WWNDFIAGLVLLGVLVFDGRLRC 309 (344)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHH
Confidence 35566666666666666554433
No 132
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=58.07 E-value=1.9e+02 Score=28.27 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.6
Q ss_pred hhHHHHHHhhhhhhhh
Q 022317 70 VIGTLATVAGAMVMTL 85 (299)
Q Consensus 70 ~~~~~l~~~Gv~~i~~ 85 (299)
++|+++...|..++.+
T Consensus 241 ~IG~~L~~~Gl~LfLl 256 (599)
T PF06609_consen 241 WIGIFLFIAGLALFLL 256 (599)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999877764
No 133
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=57.84 E-value=5.8 Score=26.03 Aligned_cols=23 Identities=26% Similarity=0.111 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhhheeeccccCC
Q 022317 240 RIIGAIIIIGGLYLVVWGKSKDH 262 (299)
Q Consensus 240 ~~~G~~lii~G~~l~~~~~~~~~ 262 (299)
-+++++++++|++++...++++.
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 46788889999888886655443
No 134
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=56.09 E-value=49 Score=24.11 Aligned_cols=51 Identities=12% Similarity=0.184 Sum_probs=35.4
Q ss_pred hcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 28 MKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 28 l~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
+|-.+.+.+-.. .....+...+-.+.+-++|+++.+ ++|..++++|+.++.
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D------~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWD------WIGAAICLVGVAIIL 102 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHH------HHhHHHHHHhHHheE
Confidence 444344443332 234444555557777899999999 999999999998876
No 135
>PF15102 TMEM154: TMEM154 protein family
Probab=53.48 E-value=26 Score=27.13 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=9.0
Q ss_pred HHHHHHhhhhheeeccccC
Q 022317 243 GAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 243 G~~lii~G~~l~~~~~~~~ 261 (299)
+.+|++..++++.+.|||+
T Consensus 68 LvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHHHHheeEEeecc
Confidence 3344444455555544443
No 136
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=52.70 E-value=1.3e+02 Score=24.71 Aligned_cols=16 Identities=6% Similarity=0.112 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022317 117 GALMITAGCFSWSFFI 132 (299)
Q Consensus 117 G~~~~l~a~~~~a~~~ 132 (299)
|+...++.++..++..
T Consensus 112 gi~tli~~~i~~G~~~ 127 (206)
T PF06570_consen 112 GIITLILVSIVGGLVF 127 (206)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5444444444444333
No 137
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.33 E-value=28 Score=24.92 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhh
Q 022317 45 AITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVM 83 (299)
Q Consensus 45 ~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i 83 (299)
.+...++.+.+||++++.. +.+..+...|+.++
T Consensus 81 ~iFv~Fsvfyl~epl~~~~------l~a~~~i~gav~fi 113 (116)
T COG3169 81 AIFVPFSVFYLKEPLRWNY------LWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHcCcchHHH------HHHHHHHHHHHHHh
Confidence 3445678888999999997 88877777777664
No 138
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=49.36 E-value=13 Score=27.03 Aligned_cols=61 Identities=5% Similarity=-0.105 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhh-----cccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhh
Q 022317 16 EPVIDQNLYFIGM-----KYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 16 ~~~~~~~~~~~al-----~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
+++..-+|+.+-- +.-+++.--++ -..+-.+.+.++.++++|++++.. +.|.+..+.++..
T Consensus 39 gIAffEY~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~------l~af~~i~~av~f 105 (108)
T PF04342_consen 39 GIAFFEYCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNY------LWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHH------HHHHHHHHHhhhe
Confidence 3455555555422 22233333333 223344556778889999999997 7777766666554
No 139
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=45.28 E-value=2.2e+02 Score=25.11 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=27.6
Q ss_pred hhHHHHHHhhhhhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q 022317 70 VIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSF 130 (299)
Q Consensus 70 ~~~~~l~~~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~ 130 (299)
+.++.+++.|+..... .-+. ........|.++..++.+.|..
T Consensus 7 ~f~~~mGtg~l~~~~~-~~~~------------------~~~~~~~~~~~~~~~~~~l~~~ 48 (330)
T PF03595_consen 7 WFGMVMGTGGLSNLLY-LLPY------------------HFGGLAILSEVLFILALILFLV 48 (330)
T ss_dssp GGHHHHHHHHHHHHHH-TTTT------------------TSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHH------------------hccchhHHHHHHHHHHHHHHHH
Confidence 8899999999888762 2111 2334456677777777777666
No 140
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=44.36 E-value=2.8e+02 Score=26.15 Aligned_cols=23 Identities=9% Similarity=0.398 Sum_probs=19.1
Q ss_pred chhhHHHHHHHHHhhhhheeecc
Q 022317 236 MYLGRIIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 236 ~t~~~~~G~~lii~G~~l~~~~~ 258 (299)
++..|++.+.++++|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 68899999999999988776543
No 141
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=42.65 E-value=85 Score=19.73 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=34.4
Q ss_pred hhhHHHHHHhhhhhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022317 69 KVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKA 141 (299)
Q Consensus 69 k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~ 141 (299)
..+|..+.++|++++.+.. -|.+..+++-...+......|+..++
T Consensus 5 ~v~G~~lv~~Gii~~~lPG----------------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPG----------------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCCC----------------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3788889999988876311 27788888888899888888877664
No 142
>PHA03049 IMV membrane protein; Provisional
Probab=42.45 E-value=24 Score=23.14 Aligned_cols=22 Identities=18% Similarity=0.129 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhheeeccccC
Q 022317 240 RIIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 240 ~~~G~~lii~G~~l~~~~~~~~ 261 (299)
-+++++++++|.+++...+++.
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4677888888988887655444
No 143
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=40.98 E-value=1.7e+02 Score=22.66 Aligned_cols=30 Identities=10% Similarity=0.142 Sum_probs=24.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 022317 111 THNSIKGALMITAGCFSWSFFIILQAITLK 140 (299)
Q Consensus 111 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~ 140 (299)
+.......+..++++..|.-|...+||..+
T Consensus 116 d~~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 116 DAEAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 344567889999999999999999887543
No 144
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=37.11 E-value=6.6 Score=30.21 Aligned_cols=23 Identities=9% Similarity=0.093 Sum_probs=15.4
Q ss_pred CceEEeecchhHHHHHHHHHHHH
Q 022317 209 GPVFVAAFSPLCMVIVAIMSTII 231 (299)
Q Consensus 209 ~~~~~s~~~~l~pv~~~l~~~~~ 231 (299)
+....+.+.|+.|.++++++.+.
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777788887777665
No 145
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=35.79 E-value=96 Score=24.03 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=24.4
Q ss_pred hcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccc
Q 022317 28 MKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKS 63 (299)
Q Consensus 28 l~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~ 63 (299)
+.--+.-.++++.++.|+++.+++.++ -+++...+
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e 103 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL-AQYLFFSE 103 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhh
Confidence 333456678899999999999888765 44444444
No 146
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=35.39 E-value=2.5e+02 Score=22.92 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 022317 116 KGALMITAGCFSWSFFIILQAIT 138 (299)
Q Consensus 116 ~G~~~~l~a~~~~a~~~v~~k~~ 138 (299)
-.+.+.+.+++..|+-..+.||.
T Consensus 194 ~pi~l~IiGav~lalRfylkkk~ 216 (226)
T COG4858 194 PPIALTIIGAVILALRFYLKKKK 216 (226)
T ss_pred chHHHHHHHHHHHHHHHHHHHhh
Confidence 35677788888888877766654
No 147
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=34.83 E-value=3.8e+02 Score=24.99 Aligned_cols=126 Identities=10% Similarity=-0.052 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhcccccceeecchhHHHHHHHHHHHHHH
Q 022317 116 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 195 (299)
Q Consensus 116 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~ 195 (299)
.|+++..+.-+++-+.-++.|+ +.| |++.....+..+...++.+++ .|+ .....--.++..+++
T Consensus 300 YgiLFI~LTF~~fflfE~~~~~---~iH-piQY~LVGlAl~lFYlLLLSl-SEh-----------i~F~~AYliAa~a~i 363 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSKL---RIH-PIQYLLVGLALVLFYLLLLSL-SEH-----------IGFNLAYLIAALACI 363 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---ccc-HHHHHHHHHHHHHHHHHHHHH-Hhh-----------hchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 196 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 196 ~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
.-..+|..++-+-.-....+...+.-..+.+...+-..|.--..-=+|..+++..++...++
T Consensus 364 ~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq~EdyALL~GSl~LF~iLa~vM~~TRk 425 (430)
T PF06123_consen 364 GLISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLLQSEDYALLMGSLLLFIILALVMYLTRK 425 (430)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHheeec
No 148
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=34.23 E-value=35 Score=20.05 Aligned_cols=18 Identities=39% Similarity=0.886 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhheeeccc
Q 022317 242 IGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 242 ~G~~lii~G~~l~~~~~~ 259 (299)
+|.++++++.+++.++++
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 345555666666654443
No 149
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.62 E-value=6.5e+02 Score=27.30 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=9.7
Q ss_pred hhhHHHHHHhhhhhh
Q 022317 69 KVIGTLATVAGAMVM 83 (299)
Q Consensus 69 k~~~~~l~~~Gv~~i 83 (299)
...++++.+++++++
T Consensus 24 E~~gIlLlllAlfL~ 38 (1355)
T PRK10263 24 EALLILIVLFAVWLM 38 (1355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 366777777776554
No 150
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=33.45 E-value=2.4e+02 Score=24.11 Aligned_cols=43 Identities=14% Similarity=-0.015 Sum_probs=23.8
Q ss_pred HHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHH
Q 022317 203 IVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAI 245 (299)
Q Consensus 203 ~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~ 245 (299)
..-++.++........+.=.+=++-..+++.-.-.+..-.+++
T Consensus 114 vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~~a~~~i 156 (249)
T PF10225_consen 114 VCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPEFAFAAI 156 (249)
T ss_pred hhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3344666666666666666666665556655544444434433
No 151
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=32.92 E-value=29 Score=29.96 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=18.9
Q ss_pred chhhHHHHHHHHHhhhhheeecc
Q 022317 236 MYLGRIIGAIIIIGGLYLVVWGK 258 (299)
Q Consensus 236 ~t~~~~~G~~lii~G~~l~~~~~ 258 (299)
+|..|+++..++++|+.+..+++
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999988775443
No 152
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=32.90 E-value=85 Score=24.60 Aligned_cols=45 Identities=7% Similarity=0.057 Sum_probs=28.3
Q ss_pred cccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhh
Q 022317 29 KYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGA 80 (299)
Q Consensus 29 ~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv 80 (299)
..-....++.+.|+.|++.++++..+. +.+...+ ...++.++.|.
T Consensus 70 ~e~~llkaa~lvYllPLl~li~ga~l~-~~~~~~e------~~~~~~~~~g~ 114 (154)
T PRK10862 70 AEGSLLRSALLVYMTPLVGLFLGAALF-QLLFGSD------LAALCGALLGG 114 (154)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcch------HHHHHHHHHHH
Confidence 334556688899999999988876553 3333334 55554444444
No 153
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=32.84 E-value=1.2e+02 Score=22.00 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhh
Q 022317 42 ILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 85 (299)
Q Consensus 42 ~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~ 85 (299)
...+...+-.+++-+.++++.+ ++|-.++++|+.++.+
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D------~~Ga~icl~G~~vil~ 104 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYD------WIGAAICLAGVAVILF 104 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHH------hhhHHHHHhceeeeEe
Confidence 3334444446667789999998 9999999999887763
No 154
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=32.31 E-value=61 Score=17.69 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=10.4
Q ss_pred chhhHHHHHHHHHhhhhhee
Q 022317 236 MYLGRIIGAIIIIGGLYLVV 255 (299)
Q Consensus 236 ~t~~~~~G~~lii~G~~l~~ 255 (299)
-.+..++|+.++..+.++..
T Consensus 10 ~~~~~~~G~~l~~~~~~~~~ 29 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGLLLR 29 (34)
T ss_pred cHHHHHHHHHHHHHHHHHhe
Confidence 34566677755555444433
No 155
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=31.97 E-value=39 Score=21.79 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.6
Q ss_pred hhhHHHHHHhhhhhhhhc
Q 022317 69 KVIGTLATVAGAMVMTLI 86 (299)
Q Consensus 69 k~~~~~l~~~Gv~~i~~~ 86 (299)
|.+|+++.+.|+.++.+.
T Consensus 1 kiigi~Llv~GivLl~~G 18 (59)
T PF11381_consen 1 KIIGIALLVGGIVLLYFG 18 (59)
T ss_pred CeeeehHHHHHHHHHHhh
Confidence 478899999999888744
No 156
>PF15345 TMEM51: Transmembrane protein 51
Probab=31.12 E-value=27 Score=29.23 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhheeeccccCCC
Q 022317 242 IGAIIIIGGLYLVVWGKSKDHK 263 (299)
Q Consensus 242 ~G~~lii~G~~l~~~~~~~~~~ 263 (299)
.|++|.++.+++..+.|+|+++
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4777888888888876665543
No 157
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=31.02 E-value=4.3e+02 Score=24.41 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc------------------------------hhHHH-HHHhhHHHHHH-HHHHHH
Q 022317 7 TKLLLLGLLEPVIDQNLYFIGMKYTT------------------------------ATFAA-AMYNILPAITF-LMAWII 54 (299)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~~~al~~~~------------------------------~~~~~-~i~~~~p~~~~-lla~~~ 54 (299)
..+.+.|++++..+-....-|...++ .+.++ ++....|-+.. +++-.+
T Consensus 3 ~~fw~~Gl~Nn~~yvv~lsaA~di~~~~~~~~~~~~~~~~~p~~~~~~~~~~~c~~~~t~~Vlladi~P~l~~Kl~aP~f 82 (402)
T PF02487_consen 3 VAFWLLGLCNNFLYVVMLSAAHDIVGEQKASPNSSHVDPDPPSTTLPSSSRRDCKSVSTGAVLLADILPSLLVKLIAPFF 82 (402)
T ss_pred hHHHHHHHhcchhHhhhHHhHHHHhhccccCCCCCCCCCCCCCCcCCCccCCCCCcccchHHHHHHHHHHHHHHHHhHhh
Confidence 45678888888777777766666555 22222 34455565554 334333
Q ss_pred -hhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 55 -RLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 55 -~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
.|-+.+.|. +.++++..+|.+++.
T Consensus 83 i~~v~y~~Ri------~~~~~l~~~g~l~va 107 (402)
T PF02487_consen 83 IHRVPYWIRI------LICVALSAAGMLLVA 107 (402)
T ss_pred hhhccchHHH------HHHHHHHHHHHhhee
Confidence 344555665 888888888888876
No 158
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=30.95 E-value=74 Score=18.53 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHhhhhh
Q 022317 221 MVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYL 253 (299)
Q Consensus 221 pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l 253 (299)
|+.+.+.+.+++--+=-...++|.-+++.|+.-
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lg 33 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLG 33 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777666555556677888888888653
No 159
>PF15471 TMEM171: Transmembrane protein family 171
Probab=30.80 E-value=68 Score=27.53 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhhhhheeeccccCC
Q 022317 238 LGRIIGAIIIIGGLYLVVWGKSKDH 262 (299)
Q Consensus 238 ~~~~~G~~lii~G~~l~~~~~~~~~ 262 (299)
..|+.|-.++++|+++++..+-|++
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKKr 185 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKKR 185 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeeec
Confidence 4789999999999999887654443
No 160
>COG2246 Predicted membrane protein [Function unknown]
Probab=30.02 E-value=2.5e+02 Score=21.46 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--ccchhHHHHHHhhHHHHHHHHHHHHhhhccccccc
Q 022317 3 LAILTKLLLLGLLEPVIDQNLYFIGMK--YTTATFAAAMYNILPAITFLMAWIIRLENVNLKSI 64 (299)
Q Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~~~al~--~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~ 64 (299)
.++..++.+.|.++..++...++.-.+ +.+...+.++....-++ ...+.+++.+.+++
T Consensus 10 ~~~~lrF~~VG~~~t~V~~~~~~ll~~~~~~~~~~A~~~a~~~~ii----~sf~~N~~wTF~~~ 69 (139)
T COG2246 10 LSRLLRFAIVGGLGTLVDFAVLWLLVKALGVPYALANAIAYEAAII----FSFVLNRRWTFRDR 69 (139)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH----HHHHHHceeeEeec
Confidence 468899999999998888888877777 46666666655544333 33455666666653
No 161
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=29.79 E-value=70 Score=25.37 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=3.8
Q ss_pred CCCCcceee
Q 022317 288 ENFGHEVTK 296 (299)
Q Consensus 288 ~~~~~~~~~ 296 (299)
||+|+.+.+
T Consensus 149 edeD~TvFd 157 (163)
T PF06679_consen 149 EDEDSTVFD 157 (163)
T ss_pred cccccceee
Confidence 334444443
No 162
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=29.75 E-value=95 Score=21.80 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEeecchhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheee
Q 022317 179 WDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 179 ~~~~~~~l~~~gi~~~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~ 256 (299)
++..|+..++++++..++.....+|-.... .....+-=.+...+|..++++|.++..+
T Consensus 28 ~sp~W~~p~m~~lmllGL~WiVvyYi~~~~--------------------i~pi~~lG~WN~~IGfg~~~~Gf~mt~r 85 (87)
T PF06781_consen 28 PSPRWYAPLMLGLMLLGLLWIVVYYISGGQ--------------------IPPIPDLGNWNLAIGFGLMIVGFLMTMR 85 (87)
T ss_pred CCCccHHHHHHHHHHHHHHHHhhhhcccCC--------------------CCCcccccchHHHHHHHHHHHHHHHHcc
Confidence 345677777777766666666555543332 0011112257888999999999887654
No 163
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=29.18 E-value=4.8e+02 Score=24.37 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeecccc
Q 022317 217 SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 260 (299)
Q Consensus 217 ~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~ 260 (299)
...-|+++.++..+..-.......+.|.+++.+|+.++.+.+++
T Consensus 395 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 395 ALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555554443322222235667888889998777765544
No 164
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=28.80 E-value=2.2e+02 Score=23.13 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=39.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchhhccCCCcCCCCCCCCCccch
Q 022317 35 FAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNS 114 (299)
Q Consensus 35 ~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (299)
..+++.+..-........+..||+++.- +.|++...+++.+.. ..+ +.....
T Consensus 28 ~~aliaA~~~a~~~~v~RL~r~~~~~~a-------~~gl~gV~i~a~~A~-~tG--------------------~A~~~F 79 (187)
T PF11361_consen 28 TPALIAALAVAVVIVVWRLVRRESVQPA-------LSGLFGVAISAAIAW-RTG--------------------SAKDFF 79 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHH-------HHHHHHHHHHHHHHH-HHC--------------------Chhhhh
Confidence 3445555555555556666677777744 566555555544433 222 233455
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 022317 115 IKGALMITAGCFSWSFFIIL 134 (299)
Q Consensus 115 ~~G~~~~l~a~~~~a~~~v~ 134 (299)
..|++.-...+..+....+.
T Consensus 80 l~gi~~n~~~~~~~l~S~lv 99 (187)
T PF11361_consen 80 LPGIWTNAVYAVVFLVSVLV 99 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66777666666666655543
No 165
>PF14851 FAM176: FAM176 family
Probab=28.52 E-value=1.8e+02 Score=22.88 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=4.1
Q ss_pred cCceEEeecc
Q 022317 208 RGPVFVAAFS 217 (299)
Q Consensus 208 ~~~~~~s~~~ 217 (299)
-.|-.++++.
T Consensus 17 ~~PE~~aLYF 26 (153)
T PF14851_consen 17 DNPERFALYF 26 (153)
T ss_pred hChHHHHHHH
Confidence 3444444433
No 166
>PF13994 PgaD: PgaD-like protein
Probab=28.50 E-value=74 Score=24.35 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhhhheeecccc
Q 022317 239 GRIIGAIIIIGGLYLVVWGKSK 260 (299)
Q Consensus 239 ~~~~G~~lii~G~~l~~~~~~~ 260 (299)
...-..++++.++++..|.+++
T Consensus 64 l~~y~~i~~~~a~~Li~Wa~yn 85 (138)
T PF13994_consen 64 LQIYLLIALVNAVILILWAKYN 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666776765444
No 167
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=27.00 E-value=33 Score=23.89 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=21.0
Q ss_pred cchhhHHHHHHHHHhhhhheeeccccC
Q 022317 235 QMYLGRIIGAIIIIGGLYLVVWGKSKD 261 (299)
Q Consensus 235 ~~t~~~~~G~~lii~G~~l~~~~~~~~ 261 (299)
..++..++|+++++.|..++..+..++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 457889999999999999987654443
No 168
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=26.82 E-value=2.5e+02 Score=24.66 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=21.6
Q ss_pred HHHHHHHHHHH-hhhcccccccccchhhhHHHHHHhhhhhhh
Q 022317 44 PAITFLMAWII-RLENVNLKSIRSLAKVIGTLATVAGAMVMT 84 (299)
Q Consensus 44 p~~~~lla~~~-~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~ 84 (299)
-+|-.+++..| +++++... +.|+++...+++-..
T Consensus 32 ~lFW~llg~~F~~G~~lp~~-------~~G~lvl~m~~la~~ 66 (308)
T PF06166_consen 32 ALFWGLLGLIFIFGDYLPPF-------VVGILVLVMALLAGF 66 (308)
T ss_pred HHHHHHHHHHHHcCccchhH-------HHHHHHHHHHHHHHc
Confidence 34566666655 45555544 888887777776544
No 169
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=26.24 E-value=1.9e+02 Score=24.56 Aligned_cols=31 Identities=10% Similarity=0.020 Sum_probs=24.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022317 112 HNSIKGALMITAGCFSWSFFIILQAITLKAY 142 (299)
Q Consensus 112 ~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~ 142 (299)
....+|.+++.+..+.||.=....|+..|..
T Consensus 124 ~~~~lG~vc~~~nI~~~~sPL~~m~~VIktk 154 (243)
T KOG1623|consen 124 RVSVLGIVCAVFNISMFAAPLSVIRKVIKTK 154 (243)
T ss_pred eeeeeehhhhhhhHHhhhccHHhhhhheecC
Confidence 3567899999999999998887778777654
No 170
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=26.16 E-value=3.6e+02 Score=21.96 Aligned_cols=35 Identities=11% Similarity=0.048 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhccCceEEeecchhHHHHHHHHH
Q 022317 194 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMS 228 (299)
Q Consensus 194 ~~~~~~~~~~al~~~~~~~~s~~~~l~pv~~~l~~ 228 (299)
.............+......+......++...+..
T Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (251)
T PF13440_consen 104 SALSQLFRSILRARGRFRAYALIDIVRSLLRLLLL 138 (251)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 34433444444444455556666677776653333
No 171
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.08 E-value=35 Score=25.66 Aligned_cols=16 Identities=25% Similarity=0.127 Sum_probs=6.3
Q ss_pred HHHHHHHhhhhheeec
Q 022317 242 IGAIIIIGGLYLVVWG 257 (299)
Q Consensus 242 ~G~~lii~G~~l~~~~ 257 (299)
.|++++++.+.++.++
T Consensus 75 aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 75 AGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444433333333
No 172
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=25.97 E-value=2.5e+02 Score=19.99 Aligned_cols=56 Identities=13% Similarity=-0.000 Sum_probs=32.8
Q ss_pred HHHHhccCceEEeecchhHHHHHHHHHHHH---hccc-chhhHHHHHHHHHhhhhheeec
Q 022317 202 GIVMKDRGPVFVAAFSPLCMVIVAIMSTII---LAEQ-MYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 202 ~~al~~~~~~~~s~~~~l~pv~~~l~~~~~---~~e~-~t~~~~~G~~lii~G~~l~~~~ 257 (299)
..++++++....-.+-.++-++.++++.+. .++. +-...|.|...-+.+.-+..-.
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~ 81 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQF 81 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHH
Confidence 566666665555666666666666665542 2322 3334577877777776665543
No 173
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=25.86 E-value=98 Score=23.42 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=27.6
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhh
Q 022317 31 TTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAM 81 (299)
Q Consensus 31 ~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~ 81 (299)
.....++++.+..|++.++++.++ ...+...+ +.+++.++.|.+
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l-~~~~~~~e------~~~~l~~l~~l~ 108 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVL-GSYLGGSE------LWAILGGLLGLA 108 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH------HHHHHHHHHHHH
Confidence 345567889999999998888655 33333324 555555555543
No 174
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=25.79 E-value=7e+02 Score=25.18 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHHH
Q 022317 2 TLAILTKLLLLGLLE 16 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~ 16 (299)
++.+|..++++++..
T Consensus 162 ~~~~~~l~~i~~l~~ 176 (742)
T TIGR01299 162 GRFQWALFFVLGLAL 176 (742)
T ss_pred CHHHHHHHHHHHHHH
Confidence 345565555555544
No 175
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=25.72 E-value=1e+02 Score=17.64 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 022317 115 IKGALMITAGCFSWSFFIIL 134 (299)
Q Consensus 115 ~~G~~~~l~a~~~~a~~~v~ 134 (299)
.+=.++-++.+..|+.|++.
T Consensus 5 lliVl~Pil~A~~Wa~fNIg 24 (36)
T CHL00196 5 LLVIAAPVLAAASWALFNIG 24 (36)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34567788999999999986
No 176
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=25.60 E-value=1.2e+02 Score=17.81 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIG 27 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~a 27 (299)
+||++.-+++.|.........++=+.
T Consensus 7 ~RR~lmN~ll~Gava~~a~~~lyP~~ 32 (39)
T PF08802_consen 7 SRRQLMNLLLGGAVAVPAGGMLYPYV 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHhhhhe
Confidence 57888888888887755555544433
No 177
>PF15345 TMEM51: Transmembrane protein 51
Probab=25.58 E-value=1.5e+02 Score=24.87 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=13.5
Q ss_pred hhHHHHHHhhhhhhhhc
Q 022317 70 VIGTLATVAGAMVMTLI 86 (299)
Q Consensus 70 ~~~~~l~~~Gv~~i~~~ 86 (299)
.+|+.+...|++++++.
T Consensus 11 AiG~Gml~LGiiM~vW~ 27 (233)
T PF15345_consen 11 AIGVGMLALGIIMIVWN 27 (233)
T ss_pred HHhHhHHHHhhHheeee
Confidence 67888888999888754
No 178
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=25.46 E-value=37 Score=25.43 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=11.3
Q ss_pred hcccchhhHH----HHHHHHHhhhhhee
Q 022317 232 LAEQMYLGRI----IGAIIIIGGLYLVV 255 (299)
Q Consensus 232 ~~e~~t~~~~----~G~~lii~G~~l~~ 255 (299)
-.|..+++.+ +.++++++|+++..
T Consensus 28 R~ED~tpWNysiL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 28 RVEDATPWNYSILALSFVVLVISFFLLG 55 (125)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3455555432 33344445555554
No 179
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.20 E-value=1.3e+02 Score=24.11 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=9.6
Q ss_pred hhHHHHHHhhhhhhhh
Q 022317 70 VIGTLATVAGAMVMTL 85 (299)
Q Consensus 70 ~~~~~l~~~Gv~~i~~ 85 (299)
++|+++..+|+..+++
T Consensus 13 ilgilli~~gI~~Lv~ 28 (191)
T PF04156_consen 13 ILGILLIASGIAALVL 28 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666553
No 180
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=24.90 E-value=35 Score=25.79 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHhhHHHH
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKYTTATFAAAMYNILPAI 46 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~p~~ 46 (299)
.|..|.++++.|.+.++++..+ ++|+.|+.=-++..+.|=+
T Consensus 4 ~w~~W~K~~~~G~~ii~~G~~l----~~y~tPTeEeL~~r~sPEL 44 (128)
T PF07960_consen 4 NWRRWAKMLVAGAVIIGGGPAL----VKYTTPTEEELFKRYSPEL 44 (128)
T ss_pred hHHHHHHHHHhcceeEeechHH----heecCCCHHHHHHhcCHHH
Confidence 5788999999888876666665 6789999999999888854
No 181
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.88 E-value=4.1e+02 Score=22.14 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=13.7
Q ss_pred hHHHHHHHHHhhhhheeec
Q 022317 239 GRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 239 ~~~~G~~lii~G~~l~~~~ 257 (299)
....|+.+++.|+++....
T Consensus 176 ~N~~gl~~~~fg~~V~~~~ 194 (214)
T cd08764 176 GNFIGIVLVIFGGLVVYLV 194 (214)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4578999998886665543
No 182
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=24.61 E-value=4.6e+02 Score=24.53 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=29.1
Q ss_pred eecchhHHHHHHHHHHHHhcc-cchhhHHHHHHHHHhhhhheeeccccCCC
Q 022317 214 AAFSPLCMVIVAIMSTIILAE-QMYLGRIIGAIIIIGGLYLVVWGKSKDHK 263 (299)
Q Consensus 214 s~~~~l~pv~~~l~~~~~~~e-~~t~~~~~G~~lii~G~~l~~~~~~~~~~ 263 (299)
++-..+-|+++.+ +++.++- .-......|++.+++|++++...|.+++.
T Consensus 163 NiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 163 NIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred hcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 3445556666655 5555443 23334567788888888887766555443
No 183
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=23.68 E-value=5.8e+02 Score=23.49 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHHHh-----cccchhhHHHHHHHHHhhhhheeecccc
Q 022317 217 SPLCMVIVAIMSTIIL-----AEQMYLGRIIGAIIIIGGLYLVVWGKSK 260 (299)
Q Consensus 217 ~~l~pv~~~l~~~~~~-----~e~~t~~~~~G~~lii~G~~l~~~~~~~ 260 (299)
....|+++++.+.++. .++. ...+.+..++++|+.++...+++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 390 FGLMTTLAIASSLILVASTFVWAPI-PGLICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHhhhHHhheech
Confidence 3455666666665543 3321 12235778888888777654443
No 184
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=22.90 E-value=6.2e+02 Score=23.55 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHhhhhheeeccc
Q 022317 238 LGRIIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 238 ~~~~~G~~lii~G~~l~~~~~~ 259 (299)
....+|.++.+.|+.++.++++
T Consensus 411 ~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 411 KYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999888876444
No 185
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=22.04 E-value=6.9e+02 Score=23.75 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=35.4
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH--HHHHHHHHHHHH
Q 022317 110 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWIC--FFGTVEGTLAAL 165 (299)
Q Consensus 110 ~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~ 165 (299)
.+....+|.+....+.+.-....++.++..+..++..+...-+. ..++....++.+
T Consensus 282 ~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~ 339 (493)
T KOG1330|consen 282 HNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLF 339 (493)
T ss_pred cccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHH
Confidence 34556678888888888888888888887776665344444443 333344444443
No 186
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=21.82 E-value=72 Score=24.35 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=24.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022317 111 THNSIKGALMITAGCFSWSFFIILQAITL 139 (299)
Q Consensus 111 ~~~~~~G~~~~l~a~~~~a~~~v~~k~~~ 139 (299)
-.+..+|.++.-.-++.|++|.++.|.+-
T Consensus 101 lsn~~LgwIL~gVf~lIWslY~~~~~~l~ 129 (138)
T PF07123_consen 101 LSNNLLGWILLGVFGLIWSLYFVYTSTLD 129 (138)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhccccC
Confidence 34567899999999999999999988754
No 187
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=21.58 E-value=6.9e+02 Score=23.54 Aligned_cols=20 Identities=5% Similarity=-0.122 Sum_probs=12.3
Q ss_pred HHHHHhccCceEEeecchhH
Q 022317 201 QGIVMKDRGPVFVAAFSPLC 220 (299)
Q Consensus 201 ~~~al~~~~~~~~s~~~~l~ 220 (299)
..+..+..++...+..+..-
T Consensus 404 ~s~~~~~aP~~~rg~~~g~~ 423 (500)
T PRK09584 404 LAMVAQLVPQRLMGFIMGSW 423 (500)
T ss_pred HHHHHHhCcHHHHHHHHHHH
Confidence 44566777776666666543
No 188
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=21.04 E-value=23 Score=26.97 Aligned_cols=19 Identities=16% Similarity=0.210 Sum_probs=11.5
Q ss_pred EeecchhHHHHHHHHHHHH
Q 022317 213 VAAFSPLCMVIVAIMSTII 231 (299)
Q Consensus 213 ~s~~~~l~pv~~~l~~~~~ 231 (299)
.+++.|+-|++.++++.++
T Consensus 70 aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 70 AAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556677777776553
No 189
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=20.96 E-value=3.1e+02 Score=19.27 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHhhhhheee
Q 022317 238 LGRIIGAIIIIGGLYLVVW 256 (299)
Q Consensus 238 ~~~~~G~~lii~G~~l~~~ 256 (299)
|...+|..++++|..+..+
T Consensus 67 WN~~IGfg~~~~G~~mt~r 85 (87)
T PRK02251 67 WNLVIGFGLIMAGFGMTTQ 85 (87)
T ss_pred hhHHHHHHHHHHHHHHHcc
Confidence 5666777777777665543
No 190
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.80 E-value=22 Score=21.19 Aligned_cols=7 Identities=29% Similarity=0.211 Sum_probs=3.4
Q ss_pred hhhhhee
Q 022317 249 GGLYLVV 255 (299)
Q Consensus 249 ~G~~l~~ 255 (299)
+|+.+++
T Consensus 21 iGl~IyQ 27 (49)
T PF11044_consen 21 IGLSIYQ 27 (49)
T ss_pred HHHHHHH
Confidence 3445554
No 191
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=20.71 E-value=4.5e+02 Score=21.11 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcccchhHHHHHHhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhccCCccchhhccC
Q 022317 19 IDQNLYFIGMKYTTATFAAAMYNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLIKGPILELFWTKG 98 (299)
Q Consensus 19 ~~~~~~~~al~~~~~~~~~~i~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~~ 98 (299)
+....++.+.+..+.-.|+...-.+.+....+.++.. +|+...+ ...++.+.+.|..-+.+.++
T Consensus 8 ~Pli~FF~~yk~~~I~~AT~~livAt~i~l~~~w~~~-rkv~km~-----l~s~~~v~vFG~lTl~f~~d---------- 71 (180)
T COG2917 8 GPLILFFAAYKVYGIYAATAVLIVATVIQLAILWIKY-RKVEKMQ-----LISGVVVVVFGGLTLIFHND---------- 71 (180)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHH-----HHHHHHHHHhchhHhhccCc----------
Confidence 3344555555555555555555555556656666554 3444444 24444455555554442221
Q ss_pred CCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 022317 99 AENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAI 137 (299)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~ 137 (299)
.--....-++..+.+.+..+...+..|.
T Consensus 72 -----------~FIKwK~TIi~~lFa~~Llgs~~~~~k~ 99 (180)
T COG2917 72 -----------TFIKWKPTIIYWLFALVLLGSQFLFKKP 99 (180)
T ss_pred -----------ceEEeeHHHHHHHHHHHHHHHHHHhcCc
Confidence 2222333566666666666655444333
No 192
>COG4854 Predicted membrane protein [Function unknown]
Probab=20.64 E-value=2.5e+02 Score=20.67 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=33.2
Q ss_pred hhhHHHHHHhhhhhhhhccCCccchhhccCCCcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022317 69 KVIGTLATVAGAMVMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAY 142 (299)
Q Consensus 69 k~~~~~l~~~Gv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~ 142 (299)
+++.+-.++.|+.++. .+.| .....++.+-++.+..-.+|..+...+.++.
T Consensus 74 qV~~is~Al~gavl~a-~knP----------------------~~~~a~~al~~A~ca~ivLy~~fY~YYsrr~ 124 (126)
T COG4854 74 QVFSISAALGGAVLLA-LKNP----------------------LHTNAAFALEFAVCAVIVLYLAFYMYYSRRA 124 (126)
T ss_pred EEEEehHHHHHHHHHH-hcCc----------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3788888999998887 3322 2234566666666666667776666655553
No 193
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=20.33 E-value=4.5e+02 Score=20.92 Aligned_cols=25 Identities=8% Similarity=-0.063 Sum_probs=16.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Q 022317 112 HNSIKGALMITAGCFSWSFFIILQA 136 (299)
Q Consensus 112 ~~~~~G~~~~l~a~~~~a~~~v~~k 136 (299)
....+|+.+-++..=|-.+...+..
T Consensus 99 LYr~LGIfLPLITTNCaVLgvaLln 123 (193)
T COG4657 99 LYRLLGIFLPLITTNCAVLGVALLN 123 (193)
T ss_pred HHHHHHHhhhhHhhchHHHHHHHHH
Confidence 3456788777777766666655543
No 194
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=20.03 E-value=4.3e+02 Score=20.63 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022317 1 MTLAILTKLLLLGLLEPVIDQNLYFIGMK 29 (299)
Q Consensus 1 ~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 29 (299)
++++.+...+..|+...+.....|+....
T Consensus 46 ~~~~~~~~i~~~g~~~~~~~~~~f~~~~~ 74 (182)
T PF00689_consen 46 INKRLLRRILIQGLIMAAACFFAFFLGLY 74 (182)
T ss_dssp SSHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHhHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677888888888887777777777776
Done!