Query 022317
Match_columns 299
No_of_seqs 154 out of 1802
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 03:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.2 1.3E-11 4.5E-16 93.8 4.3 69 189-257 35-104 (137)
2 3b5d_A Multidrug transporter E 98.8 4.5E-08 1.5E-12 71.7 10.2 69 189-257 35-104 (110)
3 2i68_A Protein EMRE; transmemb 98.5 1.8E-07 6.3E-12 70.9 7.1 70 11-86 34-104 (137)
4 3b5d_A Multidrug transporter E 98.5 3.9E-07 1.3E-11 66.6 8.3 69 11-85 34-103 (110)
5 3l1l_A Arginine/agmatine antip 48.2 39 0.0013 29.6 6.8 45 218-262 388-432 (445)
6 2zxe_G FXYD10, phospholemman-l 32.9 17 0.00057 23.5 1.2 19 241-259 25-43 (74)
7 2jo1_A Phospholemman; FXYD1, N 29.6 27 0.00093 22.3 1.8 17 241-257 22-38 (72)
8 3rko_J NADH-quinone oxidoreduc 24.0 2.5E+02 0.0085 21.6 12.5 33 225-257 127-161 (184)
9 2jp3_A FXYD domain-containing 18.4 22 0.00074 22.5 -0.3 35 241-275 23-57 (67)
10 2jwa_A Receptor tyrosine-prote 14.5 44 0.0015 19.3 0.4 23 244-266 22-44 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.18 E-value=1.3e-11 Score=93.80 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 189 SGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 189 ~gi~~~~~~~~~~~~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
.++++++++++++.+++++.+++.+..+ ..+.|++++++++++++|++++.+++|++++++|+++....
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5566788999999999999999999998 89999999999999999999999999999999999998754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.79 E-value=4.5e-08 Score=71.65 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCceEEeec-chhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeec
Q 022317 189 SGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 189 ~gi~~~~~~~~~~~~al~~~~~~~~s~~-~~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~ 257 (299)
.++++.++++.++.+++|+.+.+.+..+ ..+.|+++.++++++++|++++.+++|+.+++.|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4555678899999999999999999888 79999999999999999999999999999999999998754
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.54 E-value=1.8e-07 Score=70.86 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhhc
Q 022317 11 LLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTLI 86 (299)
Q Consensus 11 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~~ 86 (299)
+.+++..++++.+++.++++.+++.+..+ .++.|++++++++++++|++++.+ ++|+.+.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 56677779999999999999999999988 899999999999999999999998 99999999999998743
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.52 E-value=3.9e-07 Score=66.61 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHH-HhhHHHHHHHHHHHHhhhcccccccccchhhhHHHHHHhhhhhhhh
Q 022317 11 LLGLLEPVIDQNLYFIGMKYTTATFAAAM-YNILPAITFLMAWIIRLENVNLKSIRSLAKVIGTLATVAGAMVMTL 85 (299)
Q Consensus 11 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~p~~~~lla~~~~~e~~~~~~~~~~~k~~~~~l~~~Gv~~i~~ 85 (299)
+.+++...+++.++..++++.|.+.+..+ ..+.|++++++++++++|++++.+ ++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 56666678999999999999999999987 899999999999999999999997 9999999999999873
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=48.15 E-value=39 Score=29.64 Aligned_cols=45 Identities=4% Similarity=-0.085 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHhcccchhhHHHHHHHHHhhhhheeeccccCC
Q 022317 218 PLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH 262 (299)
Q Consensus 218 ~l~pv~~~l~~~~~~~e~~t~~~~~G~~lii~G~~l~~~~~~~~~ 262 (299)
..-++++.+...+.+-..-....+.|..+++.|+.++...+++++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 388 LAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344444544444433222223456688888888888876654443
No 6
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=32.93 E-value=17 Score=23.48 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=12.3
Q ss_pred HHHHHHHHhhhhheeeccc
Q 022317 241 IIGAIIIIGGLYLVVWGKS 259 (299)
Q Consensus 241 ~~G~~lii~G~~l~~~~~~ 259 (299)
+++.++.++|++++..+|-
T Consensus 25 ifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred hhHHHHHHHHHHHHHcCcc
Confidence 5566777778777775543
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=29.64 E-value=27 Score=22.28 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=11.0
Q ss_pred HHHHHHHHhhhhheeec
Q 022317 241 IIGAIIIIGGLYLVVWG 257 (299)
Q Consensus 241 ~~G~~lii~G~~l~~~~ 257 (299)
+++.++.++|++++...
T Consensus 22 ifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 22 VIAGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 45666677777776644
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=24.02 E-value=2.5e+02 Score=21.64 Aligned_cols=33 Identities=3% Similarity=0.029 Sum_probs=24.4
Q ss_pred HHHHHHHhcccchhhHHHHHHHHH--hhhhheeec
Q 022317 225 AIMSTIILAEQMYLGRIIGAIIII--GGLYLVVWG 257 (299)
Q Consensus 225 ~l~~~~~~~e~~t~~~~~G~~lii--~G~~l~~~~ 257 (299)
--+|..++++-.-+-+..+..+.+ +|.+...++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357788899999999999988875 455555543
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=18.39 E-value=22 Score=22.53 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhheeeccccCCCCCCCCCCCCCCC
Q 022317 241 IIGAIIIIGGLYLVVWGKSKDHKSPSPSTDEHLPP 275 (299)
Q Consensus 241 ~~G~~lii~G~~l~~~~~~~~~~~~~~~~~~~~~~ 275 (299)
+++.++.++|++++..++-+.+..+++.....+.+
T Consensus 23 ifA~vLfi~GI~iilS~kcrCk~~qk~~~~~~~a~ 57 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCKCRRNHTPSSLPEKVT 57 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHTCCTTTSTTTSH
T ss_pred hhHHHHHHHHHHHHHcCcccccCCCCCCCCCccCC
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=14.53 E-value=44 Score=19.29 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHhhhhheeeccccCCCCCC
Q 022317 244 AIIIIGGLYLVVWGKSKDHKSPS 266 (299)
Q Consensus 244 ~~lii~G~~l~~~~~~~~~~~~~ 266 (299)
.+++++|..+..+.++++.++++
T Consensus 22 ll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 22 LLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHhheehhhhhccC
Done!