Query 022317
Match_columns 299
No_of_seqs 154 out of 1802
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 03:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022317.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022317hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 44.9 68 0.0049 25.3 12.6 19 125-143 69-87 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 36.8 19 0.0014 16.6 2.7 19 115-133 2-20 (27)
3 d1iwga8 f.35.1.1 (A:513-566,A: 23.9 1.2E+02 0.0091 21.9 7.8 27 223-249 96-122 (222)
4 d1q90r_ f.23.12.1 (R:) ISP sub 17.7 59 0.0043 16.8 2.7 25 2-26 8-32 (39)
5 d1rh5b_ f.23.28.1 (B:) Preprot 11.1 42 0.0031 19.0 1.0 27 56-82 15-41 (56)
6 d1q90a3 f.23.23.1 (A:248-292) 5.4 2.4E+02 0.018 14.7 4.0 29 114-142 4-32 (45)
7 d1vf5c3 f.23.23.1 (C:250-286) 4.7 2.5E+02 0.018 14.0 2.4 24 114-137 5-28 (37)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 4.5 1.9E+02 0.014 17.8 2.0 20 241-260 36-55 (100)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 4.5 1.4E+02 0.0099 18.3 1.2 16 246-261 30-45 (91)
10 d1wpga4 f.33.1.1 (A:1-124,A:24 4.4 7.8E+02 0.057 19.4 14.2 29 2-30 308-336 (472)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=44.90 E-value=68 Score=25.27 Aligned_cols=19 Identities=5% Similarity=0.095 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q 022317 125 CFSWSFFIILQAITLKAYP 143 (299)
Q Consensus 125 ~~~~a~~~v~~k~~~~~~~ 143 (299)
.+.+++......+..+++.
T Consensus 69 ~~~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 69 SIAYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3444555555555566664
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=36.78 E-value=19 Score=16.56 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 022317 115 IKGALMITAGCFSWSFFII 133 (299)
Q Consensus 115 ~~G~~~~l~a~~~~a~~~v 133 (299)
.+|.++.-++++.||.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4688888888888888743
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=23.90 E-value=1.2e+02 Score=21.91 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHh
Q 022317 223 IVAIMSTIILAEQMYLGRIIGAIIIIG 249 (299)
Q Consensus 223 ~~~l~~~~~~~e~~t~~~~~G~~lii~ 249 (299)
...+.+..+.+.+++....+|..+.+.
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhh
Confidence 344456667788999888888777554
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=17.66 E-value=59 Score=16.77 Aligned_cols=25 Identities=16% Similarity=-0.029 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFI 26 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~ 26 (299)
.||++.-+++.|.........++=+
T Consensus 8 grR~~MNLll~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 8 NKRNIMNLILAGGAGLPITTLALGY 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccchhhhhhccce
Confidence 5778888888877765444444333
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=11.09 E-value=42 Score=18.98 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=17.0
Q ss_pred hhcccccccccchhhhHHHHHHhhhhh
Q 022317 56 LENVNLKSIRSLAKVIGTLATVAGAMV 82 (299)
Q Consensus 56 ~e~~~~~~~~~~~k~~~~~l~~~Gv~~ 82 (299)
-.|+++.+.....|..|+.+.++|.+-
T Consensus 15 ~~KP~~~Ef~~ia~v~~iG~~i~G~IG 41 (56)
T d1rh5b_ 15 LKKPTKDEYLAVAKVTALGISLLGIIG 41 (56)
T ss_dssp EECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777775566666666666666543
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.41 E-value=2.4e+02 Score=14.70 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022317 114 SIKGALMITAGCFSWSFFIILQAITLKAY 142 (299)
Q Consensus 114 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~ 142 (299)
...|.+..+++.+.--+..++-||-.++.
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777766553
No 7
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.74 E-value=2.5e+02 Score=14.01 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 022317 114 SIKGALMITAGCFSWSFFIILQAI 137 (299)
Q Consensus 114 ~~~G~~~~l~a~~~~a~~~v~~k~ 137 (299)
...|.+..+++.+.--+..++-||
T Consensus 5 Rv~gl~~F~~~v~laQi~lVlKKK 28 (37)
T d1vf5c3 5 RVKWMIAFICLVMLAQLMLILKKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.52 E-value=1.9e+02 Score=17.83 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=9.5
Q ss_pred HHHHHHHHhhhhheeecccc
Q 022317 241 IIGAIIIIGGLYLVVWGKSK 260 (299)
Q Consensus 241 ~~G~~lii~G~~l~~~~~~~ 260 (299)
..++.+++.++..+...+++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 34444455555555544333
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.51 E-value=1.4e+02 Score=18.31 Aligned_cols=16 Identities=13% Similarity=-0.267 Sum_probs=7.6
Q ss_pred HHHhhhhheeeccccC
Q 022317 246 IIIGGLYLVVWGKSKD 261 (299)
Q Consensus 246 lii~G~~l~~~~~~~~ 261 (299)
+++.|.+++...|+|+
T Consensus 30 v~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 30 IPAILMAVGFAWKYRA 45 (91)
T ss_dssp THHHHHHHTTTTTTTT
T ss_pred HHHHHHHHhhheeeec
Confidence 3444555555444443
No 10
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.43 E-value=7.8e+02 Score=19.39 Aligned_cols=29 Identities=7% Similarity=-0.037 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022317 2 TLAILTKLLLLGLLEPVIDQNLYFIGMKY 30 (299)
Q Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 30 (299)
+++.+......|..........+++...+
T Consensus 308 ~~~~~~~i~~~g~~~~~~~~~~~~~~~~~ 336 (472)
T d1wpga4 308 SGWLFFRYMAIGGYVGAATVGAAAWWFMY 336 (472)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666545555666665544
Done!