Query 022318
Match_columns 299
No_of_seqs 260 out of 1676
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2632 Rhomboid family protei 100.0 1.5E-29 3.2E-34 215.7 17.5 207 13-228 5-212 (258)
2 KOG0858 Predicted membrane pro 99.9 8.2E-27 1.8E-31 196.1 15.4 203 13-237 3-210 (239)
3 PRK10907 intramembrane serine 99.9 1.5E-23 3.3E-28 185.2 17.5 171 21-209 92-266 (276)
4 PTZ00101 rhomboid-1 protease; 99.9 1.6E-23 3.5E-28 184.6 16.7 177 22-217 52-244 (278)
5 PF04511 DER1: Der1-like famil 99.9 1.6E-23 3.4E-28 177.8 14.8 183 22-220 1-187 (197)
6 COG0705 Membrane associated se 99.9 7.6E-21 1.6E-25 165.4 18.2 179 22-213 16-211 (228)
7 PF01694 Rhomboid: Rhomboid fa 99.8 3.3E-20 7.1E-25 149.9 9.6 138 60-213 2-142 (145)
8 KOG2289 Rhomboid family protei 99.7 5E-18 1.1E-22 151.0 1.3 136 58-211 113-252 (316)
9 COG5291 Predicted membrane pro 99.7 7.6E-17 1.6E-21 135.4 6.2 176 21-216 18-197 (313)
10 KOG4463 Uncharacterized conser 99.4 1.3E-13 2.7E-18 117.2 5.9 187 19-216 8-207 (323)
11 KOG2290 Rhomboid family protei 99.4 2.5E-13 5.5E-18 123.4 3.4 144 60-219 447-591 (652)
12 PF08551 DUF1751: Eukaryotic i 99.1 5.3E-11 1.1E-15 89.5 4.8 91 63-155 7-97 (99)
13 KOG2890 Predicted membrane pro 99.1 2.3E-09 5E-14 93.6 11.9 154 62-217 65-219 (326)
14 KOG2980 Integral membrane prot 98.6 5.9E-08 1.3E-12 85.1 4.9 185 15-213 107-301 (310)
15 PF09527 ATPase_gene1: Putativ 52.1 63 0.0014 20.9 6.3 41 78-118 8-49 (55)
16 PRK09487 sdhC succinate dehydr 39.6 1.3E+02 0.0028 23.5 6.4 21 64-84 74-96 (129)
17 PRK11677 hypothetical protein; 24.5 1.2E+02 0.0027 23.9 3.9 22 195-216 4-25 (134)
18 COG3788 Uncharacterized relati 22.9 3.6E+02 0.0078 20.9 5.9 46 174-219 55-104 (131)
19 PF14898 DUF4491: Domain of un 22.4 2.5E+02 0.0054 20.7 4.8 44 78-122 4-53 (94)
20 COG3105 Uncharacterized protei 21.3 1.5E+02 0.0032 23.3 3.6 21 193-213 7-27 (138)
21 TIGR02230 ATPase_gene1 F0F1-AT 21.2 3.6E+02 0.0078 20.1 6.1 40 78-117 50-90 (100)
22 PF14851 FAM176: FAM176 family 20.5 3.1E+02 0.0066 22.3 5.5 33 80-118 4-36 (153)
No 1
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=215.69 Aligned_cols=207 Identities=44% Similarity=0.726 Sum_probs=183.3
Q ss_pred hHHHHhhccccHHHHHHHHHHHHHHHHHHhhcccchhhhcccchhhhccCcchhhhhhhhccCChhHHHHHHHHHHHhHH
Q 022318 13 TRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGS 92 (299)
Q Consensus 13 ~~~~~~~~~~P~vT~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~ 92 (299)
.+..+++...|.+|..++..+.+++++....+. ......|..++.+.|+||++||.++|.+..|+++||+.++..|.
T Consensus 5 g~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~i---~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~ 81 (258)
T KOG2632|consen 5 GRVGQFWMKIPLLTSIVVVLAILIYLVSFFPGI---VEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGS 81 (258)
T ss_pred ccCccccccchHHHHHHHHHHHHHHHHhccchh---hhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchh
Confidence 355677888999999999999999998877443 36667787888899999999999999999999999999999999
Q ss_pred HHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeeeeec
Q 022318 93 ELERIMG-SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFN 171 (299)
Q Consensus 93 ~lE~~~G-s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~~~ 171 (299)
.+||.+| +.+++.+..+.+++.+++++++.... .......++.++|.|++.||+++..+...|...+.+++.++
T Consensus 82 ~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~-----~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~s 156 (258)
T KOG2632|consen 82 QFERTHGTTVRILMFTVLLALFSGILYLLAYHVF-----LLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFS 156 (258)
T ss_pred HHHhhccceehHHHHHHHHHHHHHHHHHHHHHHH-----hhcchhhhcccccccHHHHHHHHHHhhcCcccchhhccccc
Confidence 9999999 88999999999999999998887522 22334456789999999999999989999999989999999
Q ss_pred chhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhcccCCChhHHHHhhcc
Q 022318 172 IPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESS 228 (299)
Q Consensus 172 i~~~~~~~~~l~~~~l~~~~~s~~~hl~G~l~G~ly~~~~l~~~~p~~~~~~~~e~~ 228 (299)
||.++.||++++.++++.|+.|+++|+||+++|+.|.++.+ .+.|.....+.+|..
T Consensus 157 iP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~~f-~lip~~~~~~~v~~~ 212 (258)
T KOG2632|consen 157 IPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFSSF-GLIPGIRNYRAVTEA 212 (258)
T ss_pred ccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhh-ccCCcchhHHHhhhh
Confidence 99999999999999999999999999999999999999877 888999988888763
No 2
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=99.95 E-value=8.2e-27 Score=196.13 Aligned_cols=203 Identities=21% Similarity=0.345 Sum_probs=171.5
Q ss_pred hHHHHhhccccHHHHHHHHHHHHHHHHHHhhcccchhhhcccchhhhccCcchhhhhhhhccCC-hhHHHHHHHHHHHhH
Q 022318 13 TRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGS-LLHVLFNMLALVPLG 91 (299)
Q Consensus 13 ~~~~~~~~~~P~vT~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~q~WRl~Ts~f~h~~-~~hll~n~~~l~~~g 91 (299)
+.+.+++.++|||||+..++|++.++++.+ +..++.++.++|+.+++++|+||++|+.+..+. -+|.++|++++|.++
T Consensus 3 ~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l-~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~ 81 (239)
T KOG0858|consen 3 MDLLNFYLQIPPVTRYYTTACVVTTLLVRL-DLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYS 81 (239)
T ss_pred hhHHHHHhcCChHHHHHHHHHHHHHHHHhh-cccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHH
Confidence 355669999999999999999999999988 778899999999999999999999999999988 499999999999999
Q ss_pred HHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeee
Q 022318 92 SELERIM---GSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFG 168 (299)
Q Consensus 92 ~~lE~~~---Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~ 168 (299)
+.||+-. .+.+|++++++++++..+........ +.+ .+.++++.+.|+..+|+.+.++++
T Consensus 82 ~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~~~-----fLg------------~~l~~~l~YvWs~~Np~~~v~F~g 144 (239)
T KOG0858|consen 82 SMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVYIV-----FLG------------QSLVFMLVYVWSKRNPDVIVSFFG 144 (239)
T ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-----HHH------------HHHHHHHHHHHHhhCCCceEEEEE
Confidence 9999875 34788888888888777665433221 221 578889999999999999999999
Q ss_pred eecchhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhcccCCChhH-HHHhhccccccccccc
Q 022318 169 LFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSF-YSAIESSSLLSTCIRQ 237 (299)
Q Consensus 169 ~~~i~~~~~~~~~l~~~~l~~~~~s~~~hl~G~l~G~ly~~~~l~~~~p~~~~-~~~~e~~~~~~~~~~~ 237 (299)
.++++++|+||+++++..+... .+ +..+.|+++||+|.+ ++.+.|.... .+.++++.+++++..+
T Consensus 145 ~~~f~a~YlPwvll~fs~l~g~-~~-~~dllGi~~GHiy~f--l~~~~p~~~gg~~~l~TP~~l~rl~~~ 210 (239)
T KOG0858|consen 145 LITFKAPYLPWVLLGFSFLFGG-SI-LVDLLGIIVGHIYYF--LDDVYPRDYGGRDLLKTPQFLKRLFAD 210 (239)
T ss_pred EecCccccchHHHHHHHHHhCC-ch-HHHHHhhhhheeEEE--EeeeccCCcCCcCcccCHHHHHHhcCC
Confidence 9999999999999987666654 34 999999999999998 8888887665 6667777777666554
No 3
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.91 E-value=1.5e-23 Score=185.18 Aligned_cols=171 Identities=23% Similarity=0.398 Sum_probs=124.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhcccchhhhcccchhhhccCcchhhhhhhhccCChhHHHHHHHHHHHhHHHHHHhhhh
Q 022318 21 SIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGS 100 (299)
Q Consensus 21 ~~P~vT~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~Gs 100 (299)
+..|+|..++++|+++|++..+.+......+...|......+|+||++|+.|+|.++.|+++||+.++.+|+.+|+.+|+
T Consensus 92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~ 171 (276)
T PRK10907 92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGS 171 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 34569999999999999998775433222333334444468899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeeeeecchhhHHHHH
Q 022318 101 VRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLI 180 (299)
Q Consensus 101 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 180 (299)
.|++.+|+++++++++....+. .....|+||+++|++++..... ... ...+ ..+|..++.+.
T Consensus 172 ~~~l~l~l~s~i~~~~~~~~~~---------------~~~~gGaSGvVygL~g~~~~~~-~~~-p~~~-~~lp~~~~~f~ 233 (276)
T PRK10907 172 GKLIVITLISALLSGWVQSKFS---------------GPWFGGLSGVVYALMGYVWLRG-ERD-PQSG-IYLPRGLIAFA 233 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---------------cchhhHHHHHHHHHHHHHHHHh-ccc-cccc-hhhhHHHHHHH
Confidence 9999999999999998865432 1235699999999998543221 111 1111 23333333222
Q ss_pred H----HHHHHHhccchhHHHHHHHHHHHHHHHH
Q 022318 181 L----LVLFQVLMTNVSLLGHLCGILSGFAYTY 209 (299)
Q Consensus 181 ~----l~~~~l~~~~~s~~~hl~G~l~G~ly~~ 209 (299)
+ +....++.+++++.+|++|+++|.+.++
T Consensus 234 llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~ 266 (276)
T PRK10907 234 LLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAF 266 (276)
T ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHHHHH
Confidence 2 2223344467899999999999999887
No 4
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.91 E-value=1.6e-23 Score=184.60 Aligned_cols=177 Identities=20% Similarity=0.263 Sum_probs=126.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhccc--------chhhh-cccchhhhccCcchhhhhhhhccCChhHHHHHHHHHHHhHH
Q 022318 22 IPFFTSAVVIVCGTIYLICLLFGYD--------SFYEI-CFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGS 92 (299)
Q Consensus 22 ~P~vT~~li~~~~~~~~~~~~~~~~--------~~~~~-~~~p~~i~~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~ 92 (299)
+|-+|..++++++++|++....+.. ....+ +..|..+ +++|+||++|+.|+|.++.|+++||+.++.+|.
T Consensus 52 i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~ 130 (278)
T PTZ00101 52 WKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHANIFHTFFNVFFQLRMGF 130 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 6779999999999999887663311 11122 3456554 689999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeeeeecc
Q 022318 93 ELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNI 172 (299)
Q Consensus 93 ~lE~~~Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~~~i 172 (299)
.+|+.+|+.|+..+|+++|+.+++++..+. .....+|+||.+||++++.....-..... .+.
T Consensus 131 ~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~--------------~~~~svGASgAifGLiGa~~~~lil~w~~----~~~ 192 (278)
T PTZ00101 131 TLEKNYGIVKIIILYFLTGIYGNILSSSVT--------------YCPIKVGASTSGMGLLGIVTSELILLWHV----IRH 192 (278)
T ss_pred HHHHHHChHHHHHHHHHHHHHHHHHHHHHc--------------cCCcEEehhHHHHHHHHHHHHHHHHHHHh----hcc
Confidence 999999999999999999999999876542 12457899999999998765321000000 011
Q ss_pred hhhHHH----HHHHHH---HHHhccchhHHHHHHHHHHHHHHHHHhhcccCC
Q 022318 173 PAKWYP----LILLVL---FQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMP 217 (299)
Q Consensus 173 ~~~~~~----~~~l~~---~~l~~~~~s~~~hl~G~l~G~ly~~~~l~~~~p 217 (299)
+.+.+. ++++.+ .....+++++.+|++|+++|.+.+..+.+++..
T Consensus 193 ~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~~ 244 (278)
T PTZ00101 193 RERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQMEN 244 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 111111 111111 112236789999999999999999977665443
No 5
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=99.91 E-value=1.6e-23 Score=177.83 Aligned_cols=183 Identities=30% Similarity=0.420 Sum_probs=149.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhcccchhhhcccchhhhccCcchhhhhhhhccCCh-hHHHHHHHHHHHhHHHHHHhh--
Q 022318 22 IPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSL-LHVLFNMLALVPLGSELERIM-- 98 (299)
Q Consensus 22 ~P~vT~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~q~WRl~Ts~f~h~~~-~hll~n~~~l~~~g~~lE~~~-- 98 (299)
+||+||+.++.+++++++..+ +..++.++.++++.+++++|+||++|+.|..++. ++++++++.++.+++.+|+..
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~-~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~ 79 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSF-GIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQ 79 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHC-CCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCC
Confidence 599999999999999999877 6677888999999999999999999999998777 899999999999999999983
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeeeeecchhhHH
Q 022318 99 GS-VRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWY 177 (299)
Q Consensus 99 Gs-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~~~i~~~~~ 177 (299)
++ .+|+++.+++++...++..+..... .+. ..-..+..+++.+.|++.+|+.+.++++++++|++|+
T Consensus 80 ~~~ady~~~ll~~~~~i~~~~~~~~~~~-----------~~~-~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~yl 147 (197)
T PF04511_consen 80 GRSADYLWFLLFGASLILILSLLIGPYF-----------FNI-PFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYL 147 (197)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccch-----------hHH-HHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhH
Confidence 22 5788888777666655554322100 001 1123568889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhcccCCChh
Q 022318 178 PLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTS 220 (299)
Q Consensus 178 ~~~~l~~~~l~~~~~s~~~hl~G~l~G~ly~~~~l~~~~p~~~ 220 (299)
||+++++..+.. +.+...++.|+++||+|.+ +++..|...
T Consensus 148 P~~~~~~~~l~~-~~~~~~~l~Gi~~Ghly~f--l~~~~p~~~ 187 (197)
T PF04511_consen 148 PWVLLAFSLLFG-GSSPIPDLLGILVGHLYYF--LKDIYPRLP 187 (197)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHH--HHHhccccc
Confidence 999887655454 4467899999999999998 888888765
No 6
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.87 E-value=7.6e-21 Score=165.39 Aligned_cols=179 Identities=26% Similarity=0.432 Sum_probs=136.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhcccchhh-------hcccchhhhccC---cchhhhhhhhccCChhHHHHHHHHHHHhH
Q 022318 22 IPFFTSAVVIVCGTIYLICLLFGYDSFYE-------ICFLPSAVISRF---QVYRFYTSIVFHGSLLHVLFNMLALVPLG 91 (299)
Q Consensus 22 ~P~vT~~li~~~~~~~~~~~~~~~~~~~~-------~~~~p~~i~~~~---q~WRl~Ts~f~h~~~~hll~n~~~l~~~g 91 (299)
.|++|+.++.+++++++.....+...... ....|....... |+||++|+.|+|.++.|+++||+.++.+|
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg 95 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG 95 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 58899999999999999887755432222 455565554333 89999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeeee-e
Q 022318 92 SELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGL-F 170 (299)
Q Consensus 92 ~~lE~~~Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~-~ 170 (299)
..+|+..|+.+|+.+|+++++++++....+.. . ...+.+|+||.++|++++++...+..+...... +
T Consensus 96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~------~------~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~ 163 (228)
T COG0705 96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGP------K------GGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSL 163 (228)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcc------c------ccCcccchhHHHHHHHHHHHHHccccchhhhhccC
Confidence 99999999999999999999999999655431 0 114789999999999999999998876655443 3
Q ss_pred cchhhHHHHHHHHHHHHhc---c---chhHHHHHHHHHHHHHHHHHhhc
Q 022318 171 NIPAKWYPLILLVLFQVLM---T---NVSLLGHLCGILSGFAYTYGFFN 213 (299)
Q Consensus 171 ~i~~~~~~~~~l~~~~l~~---~---~~s~~~hl~G~l~G~ly~~~~l~ 213 (299)
+.+...+..+. +..+++. . ++++.+|++|++.|.+++..+.+
T Consensus 164 ~~~~~~~i~~~-~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~ 211 (228)
T COG0705 164 PRPALILILIW-LLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSR 211 (228)
T ss_pred chhHHHHHHHH-HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44443332222 2222222 1 47899999999999999985444
No 7
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.82 E-value=3.3e-20 Score=149.90 Aligned_cols=138 Identities=33% Similarity=0.493 Sum_probs=101.6
Q ss_pred ccCcchhhhhhhhccCChhHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 022318 60 SRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDE 139 (299)
Q Consensus 60 ~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 139 (299)
+++|+||++|+.|+|.|+.|+++|++.++.+|..+||.+|++++..+++.+++.+++...+... ...
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~-------------~~~ 68 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSP-------------PNQ 68 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------S--
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccc-------------ccc
Confidence 6789999999999999999999999999999999999999999999999999999988766541 112
Q ss_pred cccchhHHHHHHHHHHHhhcCCccceeee---eecchhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhc
Q 022318 140 CAIGFSGVIFSLIVIETSLSGAQSRSVFG---LFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFN 213 (299)
Q Consensus 140 ~~~G~sg~ifal~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~l~~~~l~~~~~s~~~hl~G~l~G~ly~~~~l~ 213 (299)
...|+||.++|++.+.....+..+..... ...+....+++.+.. ...+++++.+|++|+++|++++..+++
T Consensus 69 ~~~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~hl~G~~~G~~~~~~~~~ 142 (145)
T PF01694_consen 69 PYVGASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLL---GFIPNISFLGHLGGFLAGLLYGFLILR 142 (145)
T ss_dssp ---SSHHHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCT---SSSSTTTHHHHHHHHHHHHHHHHHHCH
T ss_pred ccCCCcccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999888777766443321 122222222212111 115678999999999999999997665
No 8
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.69 E-value=5e-18 Score=150.97 Aligned_cols=136 Identities=22% Similarity=0.388 Sum_probs=102.6
Q ss_pred hhccCcchhhhhhhhccCChhHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 022318 58 VISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVM 137 (299)
Q Consensus 58 i~~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 137 (299)
..++.|+||++|++++|++++|+++|++.+..+|-.+|..+|..|+..+|+++++.|++++.+.. .
T Consensus 113 ~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d--------------~ 178 (316)
T KOG2289|consen 113 PVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFD--------------P 178 (316)
T ss_pred hhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhc--------------c
Confidence 34678999999999999999999999999999999999999999999999999999999988764 4
Q ss_pred cccccchhHHHHHHHHHHHhhcCCccceeeeeecchhhHH-HHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHh
Q 022318 138 DECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWY-PLILLVLFQV---LMTNVSLLGHLCGILSGFAYTYGF 211 (299)
Q Consensus 138 ~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~l---~~~~~s~~~hl~G~l~G~ly~~~~ 211 (299)
+..++|+||.+||+++++....-...... .=+...+ ..+.++.+.+ ..+.++.++|++|++.|..+++..
T Consensus 179 ~~~sVGASggvfaLlgA~Ls~l~~Nw~~m----~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil 252 (316)
T KOG2289|consen 179 NSISVGASGGVFALLGAHLSNLLTNWTIM----KNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVL 252 (316)
T ss_pred CCceecccHHHHHHHHHHHHHHHhhHHHh----cchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHh
Confidence 56799999999999987764432211110 1011111 1111111222 224567899999999999998843
No 9
>COG5291 Predicted membrane protein [Function unknown]
Probab=99.67 E-value=7.6e-17 Score=135.37 Aligned_cols=176 Identities=16% Similarity=0.306 Sum_probs=128.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhcccchhhhcccchhhhccCcchhhhhhhhccCCh-hHHHHHHHHHHHhHHHHHHhh-
Q 022318 21 SIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSL-LHVLFNMLALVPLGSELERIM- 98 (299)
Q Consensus 21 ~~P~vT~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~q~WRl~Ts~f~h~~~-~hll~n~~~l~~~g~~lE~~~- 98 (299)
.+||+||.+.++..++.++... ...++....+.....+++.|+||++|+.+..++. +..+++++++|.+.++||+-.
T Consensus 18 ~IPPITRy~~ll~~a~til~~~-~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f 96 (313)
T COG5291 18 RIPPITRYMTLLISAVTILVYV-DLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCF 96 (313)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH-hhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhcccc
Confidence 3899999999999999988877 4444545555555677899999999998888765 999999999999999999864
Q ss_pred hh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeeeeecchhhH
Q 022318 99 GS--VRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKW 176 (299)
Q Consensus 99 Gs--~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~~~i~~~~ 176 (299)
++ ++|+++.+++.+....++.+.. ..++=-++.+.++.+.|...++.....++++++++.||
T Consensus 97 ~~~lv~Y~~yl~~~~l~i~a~s~I~g----------------g~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkY 160 (313)
T COG5291 97 NTSLVEYFWYLLVISLVIFAISNIYG----------------GISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKY 160 (313)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhc----------------chhhhcchhhhheeeeeeecCCceEEEEEEeeecchhh
Confidence 44 4777776665444333332221 01111134555666788888999999999999999999
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhcccC
Q 022318 177 YPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLM 216 (299)
Q Consensus 177 ~~~~~l~~~~l~~~~~s~~~hl~G~l~G~ly~~~~l~~~~ 216 (299)
+|++++.+..+.. .......+.|+++|++..+ ++.++
T Consensus 161 lP~Illgfsfl~~-~g~~i~~vlGf~~g~~~h~--~g~I~ 197 (313)
T COG5291 161 LPFILLGFSFLSR-RGISIDDVLGFVVGHLFHY--FGDIY 197 (313)
T ss_pred hhHHHHHHHHHhc-CCccceeeeeeeecccccc--ccchh
Confidence 9999887755543 3356677888888876655 44443
No 10
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.3e-13 Score=117.20 Aligned_cols=187 Identities=17% Similarity=0.246 Sum_probs=135.3
Q ss_pred hccccHHHHHHHHHHHHHHHHHHhhcccchhhhcccchhhh-ccCcchhhhhhhhccCChhHHHHHHHHHHHhHHHHHHh
Q 022318 19 WESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVI-SRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERI 97 (299)
Q Consensus 19 ~~~~P~vT~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~i~-~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~ 97 (299)
+.+.| |||.+++...++.++..+.+..+...+.+.+ .+ +++|+|||+.+.|+..+-.++++.++.+|++ +.+||.
T Consensus 8 ~~nmp-VTK~~~iT~~~~~vvagI~~~k~~f~l~y~~--~l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERl 83 (323)
T KOG4463|consen 8 FHNMP-VTKAFVITSALFTVVAGIQGRKSKFGLSYQD--ILEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERL 83 (323)
T ss_pred ccccc-hHHHHHHHHHHHHHHHHhhhcccccccchhH--HHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHH
Confidence 45677 9999999999888888777665444444444 44 4699999999999999999999999999998 999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeeeeecchhhHH
Q 022318 98 MGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWY 177 (299)
Q Consensus 98 ~Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~~~i~~~~~ 177 (299)
.|+.||+.+++.+++.+.+..+.+..+.+. +. .+...++..|++|+.++.+-...|.......+..++..|-.
T Consensus 84 LGShky~~fiv~s~~~~~l~~~il~~l~~~--~~-----~nl~~~qp~~liFa~~~~~y~~ip~~~f~r~f~~~f~dkni 156 (323)
T KOG4463|consen 84 LGSHKYSVFIVFSGTVSLLLEVILLSLLKD--TT-----ANLLTSQPYGLIFASFIPFYLDIPVSTFFRVFGVNFSDKNI 156 (323)
T ss_pred hccccceeehhHHHHHHHHHHHHHHHHHHH--HH-----hhhhhcCCCceeeeeccceEEEecceeEEEeecccccccce
Confidence 999999999999999999888887766543 11 13445677789999887666666665544444456666633
Q ss_pred HHHHHHHHHHh-cc-----------chhHHHHHHHHHHHHHHHHHhhcccC
Q 022318 178 PLILLVLFQVL-MT-----------NVSLLGHLCGILSGFAYTYGFFNLLM 216 (299)
Q Consensus 178 ~~~~l~~~~l~-~~-----------~~s~~~hl~G~l~G~ly~~~~l~~~~ 216 (299)
-++.+....+. .+ ..+..--+||++.|++|..+...-+.
T Consensus 157 ~~i~~~G~a~sh~~NkredksaveWk~~i~f~~~gLi~~~~~~~~~agi~~ 207 (323)
T KOG4463|consen 157 SFIYLAGVALSHSSNKREDKSAVEWKRSIFFGICGLIAGSLYRLNIAGIRK 207 (323)
T ss_pred eeecccchhhhcCcccccccccceeecccccccchhhhhhHhhcccccccc
Confidence 32333222221 11 13456678999999999886555443
No 11
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.37 E-value=2.5e-13 Score=123.43 Aligned_cols=144 Identities=19% Similarity=0.257 Sum_probs=104.4
Q ss_pred ccCcchhhhhhhhccCChhHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Q 022318 60 SRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDE 139 (299)
Q Consensus 60 ~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 139 (299)
.+.|+|||+||.|+|.+.+|++..+.+.+++.+.+|+..|+.|.+.+|+++|+.|++.+.++. +..
T Consensus 447 ~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFl--------------pY~ 512 (652)
T KOG2290|consen 447 VPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFL--------------PYR 512 (652)
T ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeee--------------ccc
Confidence 367999999999999999999999999999999999999999999999999999999875542 346
Q ss_pred cccchhHHHHHHHHHHHhhcCCccceeeee-ecchhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhcccCCC
Q 022318 140 CAIGFSGVIFSLIVIETSLSGAQSRSVFGL-FNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPG 218 (299)
Q Consensus 140 ~~~G~sg~ifal~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~l~~~~~s~~~hl~G~l~G~ly~~~~l~~~~p~ 218 (299)
+.+|++|.-+|++.....-.-+.+. +..- ++.-.++... ++++..-+.|.++.++|+.|.+.|++..+.++-.+.-.
T Consensus 513 ~eVgPa~sQ~Gila~l~vEl~qs~~-il~~~w~a~~~Lia~-~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg 590 (652)
T KOG2290|consen 513 AEVGPAGSQFGILACLFVELFQSWQ-ILERPWRAFFHLIAT-LLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFG 590 (652)
T ss_pred cccCCcccccchHHHHHHHHHhhhH-hhhhHHHHHHHHHHH-HHHHHhccccchhhHHHHHHHHHHHHHHHHhhcccccc
Confidence 6788888888887644332222111 1100 0000111111 11222245588999999999999999998877766543
Q ss_pred h
Q 022318 219 T 219 (299)
Q Consensus 219 ~ 219 (299)
+
T Consensus 591 ~ 591 (652)
T KOG2290|consen 591 D 591 (652)
T ss_pred c
Confidence 3
No 12
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=99.14 E-value=5.3e-11 Score=89.49 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=75.5
Q ss_pred cchhhhhhhhccCChhHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q 022318 63 QVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAI 142 (299)
Q Consensus 63 q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (299)
++|+++|+.|++.+++.+++|.+.++..|+.+|+.||+++++.++.+.+++++++..+...+... ...+..+...+..
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~--i~~~~~~l~~~i~ 84 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYA--ITGNESYLFVPIS 84 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHH--HhCCCceeEEEec
Confidence 89999999999999999999999999999999999999999999999999999988777655432 2223332346677
Q ss_pred chhHHHHHHHHHH
Q 022318 143 GFSGVIFSLIVIE 155 (299)
Q Consensus 143 G~sg~ifal~~~~ 155 (299)
|..|++.|+++++
T Consensus 85 G~~~~~~g~lVa~ 97 (99)
T PF08551_consen 85 GFMGVLAGFLVAF 97 (99)
T ss_pred CcHHhHhheEEEE
Confidence 8888888877653
No 13
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=99.05 E-value=2.3e-09 Score=93.57 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=106.0
Q ss_pred CcchhhhhhhhccCChhHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Q 022318 62 FQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECA 141 (299)
Q Consensus 62 ~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (299)
..+|+++|+.|+..+.+..+.|...+...|+.+|+.||+.+++.++.+.....+++..+.+.+... ......+...+.
T Consensus 65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~--it~n~v~L~~~i 142 (326)
T KOG2890|consen 65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYM--ITDNHVYLYIPI 142 (326)
T ss_pred hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHH--HhcCceEEEEEe
Confidence 489999999999999999999999999999999999999999999887766666655444433322 111222344568
Q ss_pred cchhHHHHHHHHHHHhhcCCccceeeeeecchhhHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHhhcccCC
Q 022318 142 IGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLM-TNVSLLGHLCGILSGFAYTYGFFNLLMP 217 (299)
Q Consensus 142 ~G~sg~ifal~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~l~~-~~~s~~~hl~G~l~G~ly~~~~l~~~~p 217 (299)
.|..|++.|+++++....|+......-.-++..+.+|...+++..++. -.-...+.+.-+..|...+|.|++...+
T Consensus 143 ~G~~gilaGilVa~kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq~ 219 (326)
T KOG2890|consen 143 HGTTGILAGILVAWKQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQR 219 (326)
T ss_pred ccchHHHHHHHHHHHHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheeccc
Confidence 899999999999999999987544332334444446655443322221 0123345555566666666666765553
No 14
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=98.58 E-value=5.9e-08 Score=85.12 Aligned_cols=185 Identities=15% Similarity=0.237 Sum_probs=126.6
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHhhcccchhhhcccchhh---hccCcchhhhhhhhccCChhHHHHHHHHHHHhH
Q 022318 15 ANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAV---ISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLG 91 (299)
Q Consensus 15 ~~~~~~~~P~vT~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~i---~~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g 91 (299)
.+.|.+..|-+...++++++.++.++....- +....+..+ ..+.-.|.++++.|.|-+.+|+-.|++.+..+.
T Consensus 107 ~k~w~~~~~g~v~~ll~~n~~vf~lWrv~~~----~~~~~~~mls~~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~ 182 (310)
T KOG2980|consen 107 WKHWISGANGVVFGLLIANAFVFTLWRVPQK----QFTMIPWMLSRNAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYL 182 (310)
T ss_pred hHHHhhcCCcchhHHHHHHHHHHHHHHhcch----hhhhhhHHhhcccccccceeEEeehhcchhHhhhcHHHHHHHHHh
Confidence 3456667787777899999999998877331 112222211 135568889999999999999999999888886
Q ss_pred H-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeeeee
Q 022318 92 S-ELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLF 170 (299)
Q Consensus 92 ~-~lE~~~Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~~ 170 (299)
. .+-...|...+..+|+..+..+..+... .........+..|+||.++++++..+..+|+.+..+.+.+
T Consensus 183 ~~a~~~~~~~~~~~AlylSa~~~~~~i~~~----------~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f~~ 252 (310)
T KOG2980|consen 183 AGALKGSLGFSSFFALYLSAGVKGLFISVK----------DKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILFVF 252 (310)
T ss_pred cccccCCcchhhcccceeccccccceeEee----------ccccccccccccccchHHHHHHHHHhhcCcCcceeEEEee
Confidence 6 6666677777777777444444333211 0011224567899999999999999999999998888888
Q ss_pred cchhhHH-HHHHHHHHH---Hhc--cchhHHHHHHHHHHHHHHHHHhhc
Q 022318 171 NIPAKWY-PLILLVLFQ---VLM--TNVSLLGHLCGILSGFAYTYGFFN 213 (299)
Q Consensus 171 ~i~~~~~-~~~~l~~~~---l~~--~~~s~~~hl~G~l~G~ly~~~~l~ 213 (299)
+++.-.. ++-++.... +.. ...++.+|++|-+.|..++.....
T Consensus 253 ~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ 301 (310)
T KOG2980|consen 253 PVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWA 301 (310)
T ss_pred cccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHH
Confidence 8887433 211111111 111 234677999999999999875444
No 15
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=52.07 E-value=63 Score=20.90 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhH-HHHHHHHHHHHHHHHHH
Q 022318 78 LHVLFNMLALVPLGSELERIMGSV-RMFYITILLATSNAILH 118 (299)
Q Consensus 78 ~hll~n~~~l~~~g~~lE~~~Gs~-~~~~~~l~~~i~~~l~~ 118 (299)
..++.++..-+..|..+++.+++. -+....++.|+.+++..
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~ 49 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 567788888899999999999994 44455556566555543
No 16
>PRK09487 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit; Provisional
Probab=39.60 E-value=1.3e+02 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.607 Sum_probs=14.5
Q ss_pred chhhhhhhhcc--CChhHHHHHH
Q 022318 64 VYRFYTSIVFH--GSLLHVLFNM 84 (299)
Q Consensus 64 ~WRl~Ts~f~h--~~~~hll~n~ 84 (299)
.|-+..+.+.| .++=|++.++
T Consensus 74 ~~~~~~al~yH~~nGIRHL~wD~ 96 (129)
T PRK09487 74 MWGILTALAYHVVVGIRHLLMDF 96 (129)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHc
Confidence 45555666667 5778888886
No 17
>PRK11677 hypothetical protein; Provisional
Probab=24.48 E-value=1.2e+02 Score=23.92 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccC
Q 022318 195 LGHLCGILSGFAYTYGFFNLLM 216 (299)
Q Consensus 195 ~~hl~G~l~G~ly~~~~l~~~~ 216 (299)
+.-+.|+++|.+.++...+...
T Consensus 4 ~~a~i~livG~iiG~~~~R~~~ 25 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFGN 25 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3344555555555554444333
No 18
>COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]
Probab=22.92 E-value=3.6e+02 Score=20.94 Aligned_cols=46 Identities=26% Similarity=0.488 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHhc-cchhHHHHHHHHHH--H-HHHHHHhhcccCCCh
Q 022318 174 AKWYPLILLVLFQVLM-TNVSLLGHLCGILS--G-FAYTYGFFNLLMPGT 219 (299)
Q Consensus 174 ~~~~~~~~l~~~~l~~-~~~s~~~hl~G~l~--G-~ly~~~~l~~~~p~~ 219 (299)
..|.|..++++..+-+ +...|..|++|++. | .+.+++..+...|++
T Consensus 55 tEYIPi~lill~~lemnga~tw~ihilG~il~~gRv~Ha~g~~~~~~~~R 104 (131)
T COG3788 55 TEYIPIGLILLLFLEMNGAETWMVHILGIILTAGRVLHAYGLHHRLSPWR 104 (131)
T ss_pred HHHhHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHhccCCcch
Confidence 4677766555444433 34589999999863 2 234445566544433
No 19
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=22.41 E-value=2.5e+02 Score=20.71 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHhHHH------HHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022318 78 LHVLFNMLALVPLGSE------LERIMGSVRMFYITILLATSNAILHLLIA 122 (299)
Q Consensus 78 ~hll~n~~~l~~~g~~------lE~~~Gs~~~~~~~l~~~i~~~l~~~~~~ 122 (299)
..++..+..+...|-. .|..+|+ |.+.++++.|+.+.+.++.+.
T Consensus 4 ~Giiigi~tFliIG~fHpiVIk~EYyfg~-~~W~~FL~~Gi~~~~~Sl~~~ 53 (94)
T PF14898_consen 4 TGIIIGIATFLIIGLFHPIVIKGEYYFGT-RIWPIFLLAGIACIIASLFVS 53 (94)
T ss_pred hhHHHHHHHHHHHHccCeEEEEEEEecCC-CcHHHHHHHHHHHHHHHHHHc
Confidence 3455555555555432 4777788 577778888887777776654
No 20
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.26 E-value=1.5e+02 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 022318 193 SLLGHLCGILSGFAYTYGFFN 213 (299)
Q Consensus 193 s~~~hl~G~l~G~ly~~~~l~ 213 (299)
.|..-+.|+++|+++++...+
T Consensus 7 ~W~~a~igLvvGi~IG~li~R 27 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIAR 27 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666655554444
No 21
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.17 E-value=3.6e+02 Score=20.14 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhHHHHHHhhhhHH-HHHHHHHHHHHHHHH
Q 022318 78 LHVLFNMLALVPLGSELERIMGSVR-MFYITILLATSNAIL 117 (299)
Q Consensus 78 ~hll~n~~~l~~~g~~lE~~~Gs~~-~~~~~l~~~i~~~l~ 117 (299)
++++.-.+.-..+|.-|.+.+++.. +...+++.|++.++.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHH
Confidence 6777778888899999999998744 334444555544443
No 22
>PF14851 FAM176: FAM176 family
Probab=20.51 E-value=3.1e+02 Score=22.25 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 022318 80 VLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILH 118 (299)
Q Consensus 80 ll~n~~~l~~~g~~lE~~~Gs~~~~~~~l~~~i~~~l~~ 118 (299)
++.|.+..|.+- .....-+.+|+++|+..+++.
T Consensus 4 llSnsLaaya~I------~~~PE~~aLYFv~gVC~GLlL 36 (153)
T PF14851_consen 4 LLSNSLAAYAHI------RDNPERFALYFVSGVCAGLLL 36 (153)
T ss_pred HHHHHHHHHHHH------HhChHHHHHHHHHHHHHHHHH
Confidence 556666655553 334455677777777766654
Done!