Query 022318
Match_columns 299
No_of_seqs 260 out of 1676
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 03:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 1.5E-25 5.2E-30 186.8 20.4 172 21-213 2-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 1.7E-25 5.8E-30 188.8 14.7 175 20-213 6-185 (196)
3 3vr8_C Cytochrome B-large subu 9.5 5.7E+02 0.02 20.2 5.6 20 65-84 122-143 (188)
4 2xz2_A CSTF-50, isoform B; RNA 5.3 2.2E+02 0.0074 18.6 0.9 30 60-89 15-44 (66)
5 2kxa_A Haemagglutinin HA2 chai 5.0 3.7E+02 0.013 14.3 1.6 10 198-207 2-11 (30)
6 2kog_A Vesicle-associated memb 4.1 5.6E+02 0.019 18.5 2.7 9 15-23 89-97 (119)
7 3hd7_A Vesicle-associated memb 3.9 7.5E+02 0.026 16.7 3.0 9 15-23 61-69 (91)
8 3kcu_A Probable formate transp 3.6 1.8E+03 0.06 18.4 6.4 22 68-89 198-219 (285)
9 1q90_G Cytochrome B6F complex 3.3 6E+02 0.02 14.4 1.6 9 198-206 6-14 (37)
10 2z16_A Matrix protein 1, M1; A 3.1 9.8E+02 0.033 18.0 3.1 20 14-33 48-70 (165)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.94 E-value=1.5e-25 Score=186.81 Aligned_cols=172 Identities=20% Similarity=0.309 Sum_probs=130.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhcccc-hhhhcccchhhhccCcchhhhhhhhccCChhHHHHHHHHHHHhHHHHHHhhh
Q 022318 21 SIPFFTSAVVIVCGTIYLICLLFGYDS-FYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMG 99 (299)
Q Consensus 21 ~~P~vT~~li~~~~~~~~~~~~~~~~~-~~~~~~~p~~i~~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~G 99 (299)
+.||+|+.++++|+++|++....+... ..++.+.|.. .+++|+||++|+.|+|.++.|+++||+.++.+|+.+|+.+|
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G 80 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG 80 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 468899999999999999987754322 3456677764 46899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHh---hcCCccceeeeeecchhhH
Q 022318 100 SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETS---LSGAQSRSVFGLFNIPAKW 176 (299)
Q Consensus 100 s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~---~~~~~~~~~~~~~~i~~~~ 176 (299)
+.|++.+|+++++.+++.+.+.. +...+|+||+++|++++... ..|+.+.. ++.+...
T Consensus 81 ~~~fl~~yl~~~i~~~l~~~~~~---------------~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~ 141 (181)
T 2xov_A 81 SGKLIVITLISALLSGYVQQKFS---------------GPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLII 141 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------CSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc---------------CCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHH
Confidence 99999999999999999876542 12378999999999986542 44433221 1222222
Q ss_pred HHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHhhc
Q 022318 177 YPLILLVLFQVL---MTNVSLLGHLCGILSGFAYTYGFFN 213 (299)
Q Consensus 177 ~~~~~l~~~~l~---~~~~s~~~hl~G~l~G~ly~~~~l~ 213 (299)
+..+ .+...+. .+++++.+|++|+++|+++++.+.|
T Consensus 142 ~~~~-~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 142 FALI-WIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HHHH-HHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 2111 1222332 2478999999999999999885443
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.93 E-value=1.7e-25 Score=188.81 Aligned_cols=175 Identities=18% Similarity=0.282 Sum_probs=129.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHHhhccc-chhhhcccchhhhccCcchhhhhhhhccCChhHHHHHHHHHHHhHHHHHHhh
Q 022318 20 ESIPFFTSAVVIVCGTIYLICLLFGYD-SFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIM 98 (299)
Q Consensus 20 ~~~P~vT~~li~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~~g~~lE~~~ 98 (299)
.+.||+|+.++++|+++|++....+.. ..+.+.+.|..+ .++|+||++|+.|+|.++.|+++||+.++.+|+.+|+.+
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~ 84 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTF 84 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999998775432 134566777655 688999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccchhHHHHHHHHHHHhhcCCccceeeeeecchhhHHH
Q 022318 99 GSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYP 178 (299)
Q Consensus 99 Gs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~sg~ifal~~~~~~~~~~~~~~~~~~~~i~~~~~~ 178 (299)
|+.|++.+|+++++.+++.+.++. +...+|+||+++|++++.... +..+...+ .++.+...+.
T Consensus 85 G~~~~l~~yl~~~~~~~l~~~~~~---------------~~~~vGaSGai~gl~g~~~~~-~~~~~~~~-~~~~~~~~~~ 147 (196)
T 2nr9_A 85 GSVKLLMLYVVASAITGYVQNYVS---------------GPAFFGLSGVVYAVLGYVFIR-DKLNHHLF-DLPEGFFTML 147 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---------------CSCCCCSHHHHHHHHHHHHHH-HHSSTTSC-CCCCSSTTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhc---------------CCCeeeHHHHHHHHHHHHHHH-HHhcchhh-cchHHHHHHH
Confidence 999999999999999999876642 123789999999999865432 11111111 1222222211
Q ss_pred HHHHHHHHHhc----cchhHHHHHHHHHHHHHHHHHhhc
Q 022318 179 LILLVLFQVLM----TNVSLLGHLCGILSGFAYTYGFFN 213 (299)
Q Consensus 179 ~~~l~~~~l~~----~~~s~~~hl~G~l~G~ly~~~~l~ 213 (299)
.+. +...+.. +++++.+|++|+++|.++++.+.+
T Consensus 148 ~~~-~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 148 LVG-IALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp TTT-TTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 111 1122222 378999999999999999986544
No 3
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=9.46 E-value=5.7e+02 Score=20.24 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=13.6
Q ss_pred hhhhhhhhcc--CChhHHHHHH
Q 022318 65 YRFYTSIVFH--GSLLHVLFNM 84 (299)
Q Consensus 65 WRl~Ts~f~h--~~~~hll~n~ 84 (299)
|-+....+.| .++=|++.|+
T Consensus 122 ~~l~~a~~yH~~nGIRHLiwD~ 143 (188)
T 3vr8_C 122 FIIAFPIAFHTLNGIRFIGFDM 143 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 4455566666 5778888885
No 4
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=5.32 E-value=2.2e+02 Score=18.59 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=23.7
Q ss_pred ccCcchhhhhhhhccCChhHHHHHHHHHHH
Q 022318 60 SRFQVYRFYTSIVFHGSLLHVLFNMLALVP 89 (299)
Q Consensus 60 ~~~q~WRl~Ts~f~h~~~~hll~n~~~l~~ 89 (299)
.+-+++||+.+.++..+...+..|+-....
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~ 44 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVK 44 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Confidence 366899999999999888887777665443
No 5
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=5.00 E-value=3.7e+02 Score=14.34 Aligned_cols=10 Identities=40% Similarity=0.767 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 022318 198 LCGILSGFAY 207 (299)
Q Consensus 198 l~G~l~G~ly 207 (299)
+.|.++|++-
T Consensus 2 lFGAIAGfie 11 (30)
T 2kxa_A 2 LFGAIAGFIE 11 (30)
T ss_dssp HHHHHHHHHH
T ss_pred cchhhhhhhh
Confidence 3455566553
No 6
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=4.14 E-value=5.6e+02 Score=18.52 Aligned_cols=9 Identities=22% Similarity=1.154 Sum_probs=5.3
Q ss_pred HHHhhcccc
Q 022318 15 ANQWWESIP 23 (299)
Q Consensus 15 ~~~~~~~~P 23 (299)
.+-||++.-
T Consensus 89 rkmwwkn~K 97 (119)
T 2kog_A 89 RKYWWKNLK 97 (119)
T ss_dssp HHHSCHHHH
T ss_pred HHHHHHHHH
Confidence 445676654
No 7
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=3.86 E-value=7.5e+02 Score=16.74 Aligned_cols=9 Identities=22% Similarity=1.154 Sum_probs=5.3
Q ss_pred HHHhhcccc
Q 022318 15 ANQWWESIP 23 (299)
Q Consensus 15 ~~~~~~~~P 23 (299)
-+-||++.-
T Consensus 61 rkmwwkn~K 69 (91)
T 3hd7_A 61 RKYWWKNLK 69 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344677665
No 8
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=3.61 E-value=1.8e+03 Score=18.44 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=18.1
Q ss_pred hhhhhccCChhHHHHHHHHHHH
Q 022318 68 YTSIVFHGSLLHVLFNMLALVP 89 (299)
Q Consensus 68 ~Ts~f~h~~~~hll~n~~~l~~ 89 (299)
.+..|+-.++-|.+-||+.+..
T Consensus 198 pi~~Fv~~GfEH~VANm~~ip~ 219 (285)
T 3kcu_A 198 PVAMFVASGFEHSIANMFMIPM 219 (285)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHcCcchhhhhHHHHHH
Confidence 3677888999999999997754
No 9
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=3.25 E-value=6e+02 Score=14.38 Aligned_cols=9 Identities=56% Similarity=1.276 Sum_probs=5.3
Q ss_pred HHHHHHHHH
Q 022318 198 LCGILSGFA 206 (299)
Q Consensus 198 l~G~l~G~l 206 (299)
++|++.|.+
T Consensus 6 L~GIVlGli 14 (37)
T 1q90_G 6 LCGIVLGLV 14 (37)
T ss_dssp HHHHHHHHH
T ss_pred hhhHHHhhH
Confidence 566666654
No 10
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=3.15 E-value=9.8e+02 Score=18.01 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=13.6
Q ss_pred HHHHhhcccc---HHHHHHHHHH
Q 022318 14 RANQWWESIP---FFTSAVVIVC 33 (299)
Q Consensus 14 ~~~~~~~~~P---~vT~~li~~~ 33 (299)
...+|+++.| ++|+.++...
T Consensus 48 almEWlk~r~~ls~l~k~ilg~~ 70 (165)
T 2z16_A 48 ALMEWLKTRPILSPLTKGILGFV 70 (165)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHH
T ss_pred HHHHHHhcCcccchHHhhhhheE
Confidence 4567887766 6788776554
Done!