BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022319
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 15/252 (5%)
Query: 25 ADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRG 84
A+ IE L+ + E + FF V I+ +E+I + + L+ + S +
Sbjct: 26 AEAQIEETSLSAQPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDR 85
Query: 85 LRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQA-FKEGS-SVD-RTRISVTNGL 141
L ++++ +A I ++A L+ ++K N R + F++G+ S D R R S + L
Sbjct: 86 LNEKLQDTMARISALGNKIRADLKQIEKEN--KRAQQEGTFEDGTVSTDLRIRQSQHSSL 143
Query: 142 RVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPS--EDVIEKVISGSGKVEILEG 199
K +M + ++ + Y E++ R+ EPS +D I+KVI G I G
Sbjct: 144 SRKFVKVMTRYNDVQAENKRRYGENVARQCRVV---EPSLSDDAIQKVIE-HGTEGIFSG 199
Query: 200 ----KTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGN 255
E + ++RH+ + ++RSL +LH++F DM+ LV +Q E +D IE +V + N
Sbjct: 200 MRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHN 259
Query: 256 FISGGTNSLYYA 267
++ T + A
Sbjct: 260 YVKKATEQVVQA 271
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 129/257 (50%), Gaps = 45/257 (17%)
Query: 42 LTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESD-----VASI 96
+ +FF++V+ I+G +++I +N+ E K HS + D + ++ I
Sbjct: 42 MDEFFEQVEEIRGFIDKIA------ENVEE-VKRKHSAILASPNPDEKTKEELEELMSDI 94
Query: 97 LRKAKIVKARLESLDKS----NMINRMLSQAFKEGSSVD-RTRISVTNGLRVKLRDLMND 151
+ A V+++L+S+++S +NR SS D R R + + L K ++M++
Sbjct: 95 KKTANKVRSKLKSIEQSIEQEEGLNR---------SSADLRIRKTQHSTLSRKFVEVMSE 145
Query: 152 FQSLRGKVLSDYKEDLK---RRYYNATGEEPSEDVIEKVISGSGKVEILEGKTEKDIQRS 208
+ + + SDY+E K +R TG + + +E ++ SG I D S
Sbjct: 146 YNATQ----SDYRERCKGRIQRQLEITGRTTTSEELEDMLE-SGNPAIFASGIIMDSSIS 200
Query: 209 KE-------RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNF----I 257
K+ RH ++ ++ S+ +LH +F+DMA+LVE+Q E +D IE NV +A ++ +
Sbjct: 201 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAV 260
Query: 258 SGGTNSLYYANQTRKKR 274
S ++ Y ++ R+K+
Sbjct: 261 SDTKKAVKYQSKARRKK 277
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNF----ISGGTNSLYY 266
RH ++ ++ S+ +LH +F+DMA+LVE+Q E +D IE NV +A ++ +S ++ Y
Sbjct: 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78
Query: 267 ANQTRKKRSW--VCWV 280
++ R+K+ +C V
Sbjct: 79 QSKARRKKIMIIICCV 94
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNF----ISGGTNSLYY 266
RH ++ ++ S+ +LH +F+DMA+LVE+Q E +D IE NV +A ++ +S ++ Y
Sbjct: 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67
Query: 267 ANQTRKKR 274
++ R+K+
Sbjct: 68 QSKARRKK 75
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 44/67 (65%), Gaps = 4/67 (5%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNF----ISGGTNSLYY 266
RH ++ ++ S+ +LH +F+DMA+LVE+Q E +D IE NV +A ++ +S ++ Y
Sbjct: 9 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 68
Query: 267 ANQTRKK 273
++ R+K
Sbjct: 69 QSKARRK 75
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257
RH +M ++ S+ +LH +F+DMA+LVE+Q E +D IE NV A ++I
Sbjct: 24 RHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYI 70
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257
RH ++ ++ S+ +LH +F+DMA+LVE+Q E +D IE NV +A +++
Sbjct: 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 65
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257
RH ++ ++ S+ +LH +F+DMA+LVE+Q E +D IE NV +A +++
Sbjct: 14 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 60
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257
RH ++ ++ S+ +LH +F+DMA+LVE+Q E +D IE NV +A +++
Sbjct: 10 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 56
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257
RH ++ ++ S+ +LH +F+DMA+LVE+Q E +D IE NV +A +++
Sbjct: 10 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 56
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 35/47 (74%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257
RH ++ ++ S+ +LH +F+DMA+LVE+Q E +D IE NV +A +++
Sbjct: 10 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 56
>pdb|1FIO|A Chain A, Crystal Structure Of Yeast T-Snare Protein Sso1
Length = 196
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 159 VLSDYKEDLK---RRYYNATGEEPSEDVIEKVISGSGKVEILE---------GKTEKDIQ 206
V S+YKE+ K +R Y E +ED +E IS G +I G+ + +
Sbjct: 103 VDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALA 162
Query: 207 RSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQE 240
+ RH+ ++ +++S+ +L Q+F DM LV Q+
Sbjct: 163 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex
Length = 71
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSL----YY 266
R A+ ++ + ++Q+F D+A+++ Q + +D IE NV ++ + ++ L YY
Sbjct: 4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63
Query: 267 ANQTRKK 273
++RKK
Sbjct: 64 QKKSRKK 70
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|F Chain F, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|J Chain J, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 69
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANA 253
RH+ ++ +++S+ +L Q+F DM LV Q+E +D I++NV +A
Sbjct: 8 RHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDA 50
>pdb|2PNY|A Chain A, Structure Of Human Isopentenyl-Diphosphate Delta-Isomerase
2
Length = 246
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 13 VELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQEV--DAIKGEMEEITNLLLDLQNLN 70
+ +++ AQ+ L+A+L I Q++P D +T + + D I GE EI LLL +N+
Sbjct: 121 IGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGE-HEICYLLLVRKNVT 179
Query: 71 EGTKSTHSGKVL 82
+ + +L
Sbjct: 180 LNPDPSETKSIL 191
>pdb|4GFI|A Chain A, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|B Chain B, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|C Chain C, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|D Chain D, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
Length = 329
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 74 KSTHSGKVLRGLRDRMES-----DVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGS 128
+S HS + L GLRDR ++ D L +A ++KA E L + M+ ML +
Sbjct: 227 ESVHSTEDLAGLRDRYDAINIKLDKTGGLTEALVMKAEAERLGFTIMVGCMLGTSLGMAP 286
Query: 129 SV 130
+V
Sbjct: 287 AV 288
>pdb|2FXA|A Chain A, Structure Of The Protease Production Regulatory Protein
Hpr From Bacillus Subtilis.
pdb|2FXA|B Chain B, Structure Of The Protease Production Regulatory Protein
Hpr From Bacillus Subtilis.
pdb|2FXA|C Chain C, Structure Of The Protease Production Regulatory Protein
Hpr From Bacillus Subtilis.
pdb|2FXA|D Chain D, Structure Of The Protease Production Regulatory Protein
Hpr From Bacillus Subtilis
Length = 207
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 9/51 (17%)
Query: 141 LRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGS 191
L ++ NDF+S+ GK LK++ ++ +EP+E+ +E V SGS
Sbjct: 166 FETSLTNIDNDFESVNGK--------LKKKAKDSAADEPAEE-LEPVNSGS 207
>pdb|3PNN|A Chain A, The Crystal Structure Of A Glycosyltransferase From
Porphyromonas Gingivalis W83
Length = 303
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 162 DYKEDLKRRYYNATGEEP-SEDVIEKVI-----SGSGKVEILE 198
DY E+L + NA G+EP SE I V+ SG VE+L+
Sbjct: 226 DYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEVLD 268
>pdb|2IU4|A Chain A, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
pdb|2IU4|B Chain B, Dihydroxyacetone Kinase Operon Co-Activator Dha-Dhaq
Length = 336
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 36 PRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVAS 95
P +N+ + ++V++ KG I N DL+ NE K + G+ R
Sbjct: 78 PPKSKNILKAIRQVNSGKGVFVIIKNFEADLKEFNEAIKEART----EGIDVRYIVSHDD 133
Query: 96 ILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVD 131
I A R + + +++++L KEG S+D
Sbjct: 134 ISVNAYNFHKRHRGVAGTILLHKILGAFAKEGGSID 169
>pdb|2IU6|A Chain A, Regulation Of The Dha Operon Of Lactococcus Lactis
pdb|2IU6|B Chain B, Regulation Of The Dha Operon Of Lactococcus Lactis
Length = 336
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 36 PRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVAS 95
P +N+ + ++V++ KG I N DL+ NE K + G+ R
Sbjct: 78 PPKSKNILKAIRQVNSGKGVFVIIKNFEADLKEFNEAIKEART----EGIDVRYIVSHDD 133
Query: 96 ILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVD 131
I A R + + +++++L KEG S+D
Sbjct: 134 ISVNAYNFHKRHRGVAGTILLHKILGAFAKEGGSID 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,766,651
Number of Sequences: 62578
Number of extensions: 306391
Number of successful extensions: 850
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 42
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)