Query 022319
Match_columns 299
No_of_seqs 156 out of 1240
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 100.0 4E-56 8.7E-61 402.8 31.9 284 1-297 1-291 (297)
2 COG5074 t-SNARE complex subuni 100.0 1.9E-39 4.2E-44 276.3 28.0 236 43-293 21-268 (280)
3 KOG0809 SNARE protein TLG2/Syn 100.0 1.9E-34 4.1E-39 254.5 23.1 239 42-294 56-300 (305)
4 KOG0811 SNARE protein PEP12/VA 100.0 7.7E-30 1.7E-34 227.7 27.9 234 43-296 17-264 (269)
5 COG5325 t-SNARE complex subuni 99.9 1.2E-24 2.7E-29 190.9 26.7 243 39-297 30-280 (283)
6 cd00179 SynN Syntaxin N-termin 99.9 6.5E-22 1.4E-26 164.5 19.0 149 42-198 1-149 (151)
7 KOG0812 SNARE protein SED5/Syn 99.9 6.2E-20 1.3E-24 161.8 27.3 237 43-293 41-307 (311)
8 smart00503 SynN Syntaxin N-ter 99.7 4.9E-15 1.1E-19 117.7 15.8 116 41-164 2-117 (117)
9 PF05739 SNARE: SNARE domain; 99.6 4E-14 8.6E-19 100.3 10.3 63 210-272 1-63 (63)
10 PF00804 Syntaxin: Syntaxin; 99.5 7E-13 1.5E-17 102.5 15.0 103 41-149 1-103 (103)
11 cd00193 t_SNARE Soluble NSF (N 99.4 4.6E-13 1E-17 93.5 7.8 59 209-267 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.3 1.4E-11 3E-16 87.4 9.1 64 204-267 3-66 (66)
13 KOG3202 SNARE protein TLG1/Syn 98.9 2.2E-06 4.7E-11 75.8 26.1 225 44-293 7-232 (235)
14 PF14523 Syntaxin_2: Syntaxin- 98.6 4.1E-06 8.8E-11 64.8 14.1 99 52-164 1-99 (102)
15 KOG3894 SNARE protein Syntaxin 98.1 0.0075 1.6E-07 55.1 26.7 89 203-291 222-311 (316)
16 PF00957 Synaptobrevin: Synapt 97.8 0.00086 1.9E-08 50.5 13.0 83 213-295 3-87 (89)
17 KOG0860 Synaptobrevin/VAMP-lik 97.7 0.0016 3.5E-08 51.0 12.3 85 212-298 28-116 (116)
18 KOG0810 SNARE protein Syntaxin 96.8 0.44 9.6E-06 44.0 27.4 94 201-297 201-295 (297)
19 KOG3385 V-SNARE [Intracellular 96.6 0.03 6.6E-07 43.8 9.4 78 210-289 33-111 (118)
20 PF09753 Use1: Membrane fusion 96.4 0.054 1.2E-06 48.8 11.8 68 214-287 171-239 (251)
21 COG5074 t-SNARE complex subuni 93.0 6.1 0.00013 35.0 22.0 83 206-289 185-268 (280)
22 KOG0809 SNARE protein TLG2/Syn 92.2 9.1 0.0002 35.1 16.3 229 34-289 55-299 (305)
23 KOG1666 V-SNARE [Intracellular 92.2 7.4 0.00016 34.0 26.0 62 227-288 149-210 (220)
24 KOG3065 SNAP-25 (synaptosome-a 88.7 2.2 4.7E-05 39.0 7.9 55 212-266 217-271 (273)
25 PF09753 Use1: Membrane fusion 88.1 14 0.0003 33.2 12.7 90 203-295 152-244 (251)
26 PF09177 Syntaxin-6_N: Syntaxi 86.0 13 0.00028 28.2 11.5 62 45-116 3-64 (97)
27 PF05478 Prominin: Prominin; 85.6 52 0.0011 34.8 27.7 54 215-270 359-412 (806)
28 PF09889 DUF2116: Uncharacteri 84.8 3.4 7.4E-05 28.6 5.3 28 261-288 25-52 (59)
29 KOG0811 SNARE protein PEP12/VA 84.6 32 0.00068 31.4 22.3 88 203-292 177-264 (269)
30 COG5325 t-SNARE complex subuni 84.3 32 0.0007 31.3 24.1 71 203-276 192-262 (283)
31 PF03908 Sec20: Sec20; InterP 83.4 17 0.00036 27.3 12.4 61 236-299 31-91 (92)
32 COG4980 GvpP Gas vesicle prote 82.4 19 0.0004 28.5 9.2 20 1-20 4-23 (115)
33 PRK14762 membrane protein; Pro 82.3 2.1 4.6E-05 24.1 2.8 20 277-296 4-23 (27)
34 PF00435 Spectrin: Spectrin re 81.3 18 0.0004 26.3 9.7 65 38-103 32-96 (105)
35 PF02346 Vac_Fusion: Chordopox 79.7 12 0.00026 25.7 6.5 45 214-258 2-46 (57)
36 PRK04325 hypothetical protein; 79.2 21 0.00046 25.8 8.1 51 207-260 6-56 (74)
37 PRK00295 hypothetical protein; 77.9 22 0.00048 25.2 8.0 46 215-260 7-52 (68)
38 PF00957 Synaptobrevin: Synapt 77.3 26 0.00057 25.8 12.5 8 267-274 47-54 (89)
39 KOG0860 Synaptobrevin/VAMP-lik 76.7 18 0.00039 28.6 7.5 8 267-274 73-80 (116)
40 PF06789 UPF0258: Uncharacteri 76.7 0.84 1.8E-05 37.6 0.1 20 278-297 137-156 (159)
41 KOG2678 Predicted membrane pro 76.0 56 0.0012 28.9 12.0 50 213-265 158-207 (244)
42 PRK10884 SH3 domain-containing 75.8 54 0.0012 28.6 12.6 42 225-266 116-157 (206)
43 PF13314 DUF4083: Domain of un 75.8 2.8 6.1E-05 28.7 2.4 24 276-299 6-29 (58)
44 PHA02844 putative transmembran 75.7 3.7 7.9E-05 29.6 3.1 24 275-298 47-70 (75)
45 KOG4331 Polytopic membrane pro 75.2 1.1E+02 0.0025 32.1 15.7 29 224-252 369-397 (865)
46 PRK10404 hypothetical protein; 74.7 37 0.0008 26.2 11.1 53 243-299 40-100 (101)
47 KOG0859 Synaptobrevin/VAMP-lik 74.2 9.6 0.00021 33.0 5.8 56 215-273 127-182 (217)
48 PF10717 ODV-E18: Occlusion-de 73.6 4 8.6E-05 30.1 2.9 18 276-293 27-44 (85)
49 PF04102 SlyX: SlyX; InterPro 73.4 25 0.00054 24.9 7.1 49 213-261 4-52 (69)
50 PF04505 Dispanin: Interferon- 70.1 3.9 8.5E-05 30.2 2.3 28 260-287 49-76 (82)
51 PF10779 XhlA: Haemolysin XhlA 68.5 40 0.00086 24.0 9.2 44 240-287 19-63 (71)
52 PHA02650 hypothetical protein; 68.2 5.8 0.00013 28.9 2.8 22 275-296 48-69 (81)
53 PHA03240 envelope glycoprotein 68.2 4.8 0.0001 35.1 2.8 15 275-289 214-228 (258)
54 PHA03054 IMV membrane protein; 67.8 7 0.00015 27.9 3.1 24 275-298 47-70 (72)
55 PHA02819 hypothetical protein; 67.7 6.8 0.00015 28.0 3.0 24 275-298 45-68 (71)
56 KOG0994 Extracellular matrix g 67.0 2.1E+02 0.0045 31.7 16.9 64 202-265 1597-1664(1758)
57 PHA02975 hypothetical protein; 66.8 6 0.00013 28.1 2.5 24 275-298 43-66 (69)
58 KOG1666 V-SNARE [Intracellular 65.8 23 0.00049 31.0 6.4 48 249-296 164-214 (220)
59 PF00523 Fusion_gly: Fusion gl 65.0 10 0.00023 37.5 4.8 32 242-274 433-464 (490)
60 PRK00736 hypothetical protein; 64.3 49 0.0011 23.5 7.2 45 215-259 7-51 (68)
61 KOG3202 SNARE protein TLG1/Syn 64.0 34 0.00074 30.5 7.4 20 235-254 146-165 (235)
62 PF09889 DUF2116: Uncharacteri 63.9 19 0.00042 24.9 4.6 21 275-295 36-56 (59)
63 KOG3251 Golgi SNAP receptor co 63.2 1.1E+02 0.0023 27.0 24.7 52 236-287 152-203 (213)
64 TIGR01837 PHA_granule_1 poly(h 61.9 77 0.0017 25.0 8.7 19 2-20 3-21 (118)
65 PF05957 DUF883: Bacterial pro 61.4 66 0.0014 24.0 11.9 78 218-299 7-93 (94)
66 PF08999 SP_C-Propep: Surfacta 61.3 11 0.00024 27.7 3.2 9 287-295 45-53 (93)
67 PF12575 DUF3753: Protein of u 60.5 12 0.00027 26.9 3.2 22 276-297 48-69 (72)
68 KOG1161 Protein involved in va 60.3 1.4E+02 0.003 27.8 10.9 89 6-104 16-117 (310)
69 PF11239 DUF3040: Protein of u 59.9 14 0.00029 27.2 3.6 12 242-253 10-21 (82)
70 PRK10132 hypothetical protein; 59.9 81 0.0018 24.6 11.8 43 242-284 46-95 (108)
71 KOG3850 Predicted membrane pro 59.3 1.7E+02 0.0037 28.1 18.0 52 204-257 300-351 (455)
72 PF03904 DUF334: Domain of unk 59.1 1.3E+02 0.0028 26.7 13.4 43 246-288 118-161 (230)
73 PF06072 Herpes_US9: Alphaherp 59.0 34 0.00075 23.6 5.0 10 289-298 48-57 (60)
74 PHA02675 ORF104 fusion protein 58.6 63 0.0014 23.9 6.7 42 217-258 34-75 (90)
75 TIGR01294 P_lamban phospholamb 57.7 22 0.00049 23.0 3.7 11 279-289 38-48 (52)
76 PRK02793 phi X174 lysis protei 57.3 69 0.0015 23.0 7.7 47 213-259 8-54 (72)
77 PF10779 XhlA: Haemolysin XhlA 56.6 69 0.0015 22.7 10.0 13 241-253 6-18 (71)
78 PHA03046 Hypothetical protein; 55.7 1.1E+02 0.0023 24.7 10.3 64 179-257 65-128 (142)
79 PF00523 Fusion_gly: Fusion gl 55.4 9.7 0.00021 37.7 2.7 40 242-282 439-478 (490)
80 PF10661 EssA: WXG100 protein 55.4 13 0.00028 30.6 3.1 22 275-296 118-139 (145)
81 PF10368 YkyA: Putative cell-w 55.1 1.4E+02 0.0031 25.9 17.5 67 46-112 24-93 (204)
82 PF10496 Syntaxin-18_N: SNARE- 55.0 43 0.00094 24.6 5.7 34 39-72 35-68 (87)
83 PF03915 AIP3: Actin interacti 55.0 2.1E+02 0.0046 27.9 16.1 90 133-246 243-332 (424)
84 PF11598 COMP: Cartilage oligo 54.7 29 0.00062 22.7 4.0 27 216-242 4-30 (45)
85 PHA03240 envelope glycoprotein 54.3 12 0.00025 32.8 2.7 27 269-295 203-231 (258)
86 TIGR03503 conserved hypothetic 53.7 13 0.00028 35.5 3.1 20 280-299 351-370 (374)
87 PF05399 EVI2A: Ectropic viral 53.4 12 0.00027 32.6 2.7 14 275-288 130-143 (227)
88 PF06657 Cep57_MT_bd: Centroso 53.3 87 0.0019 22.9 10.3 63 42-104 12-74 (79)
89 PRK08307 stage III sporulation 53.3 52 0.0011 27.7 6.5 29 261-289 138-168 (171)
90 PF04272 Phospholamban: Phosph 53.2 28 0.00061 22.6 3.6 7 281-287 40-46 (52)
91 PF10267 Tmemb_cc2: Predicted 51.8 2.3E+02 0.005 27.4 13.2 32 39-70 211-242 (395)
92 TIGR02833 spore_III_AB stage I 51.7 57 0.0012 27.5 6.5 29 261-289 137-167 (170)
93 PHA02692 hypothetical protein; 51.5 19 0.00041 25.7 2.9 24 275-298 44-68 (70)
94 PRK04406 hypothetical protein; 51.4 91 0.002 22.6 7.7 47 213-259 11-57 (75)
95 smart00150 SPEC Spectrin repea 51.0 90 0.0019 22.4 9.6 38 39-76 30-67 (101)
96 COG4068 Uncharacterized protei 50.6 57 0.0012 22.5 5.0 31 262-294 31-61 (64)
97 PRK02119 hypothetical protein; 49.9 95 0.0021 22.3 7.9 47 213-259 9-55 (73)
98 KOG0996 Structural maintenance 49.9 4E+02 0.0087 29.5 21.9 53 205-257 941-993 (1293)
99 PF05531 NPV_P10: Nucleopolyhe 49.6 1E+02 0.0022 22.5 7.1 49 51-101 8-56 (75)
100 COG4640 Predicted membrane pro 48.8 17 0.00037 34.7 3.1 24 259-282 31-56 (465)
101 PHA03049 IMV membrane protein; 48.6 24 0.00051 24.9 3.0 7 291-297 18-24 (68)
102 PF09548 Spore_III_AB: Stage I 48.2 72 0.0016 26.7 6.6 28 261-288 137-166 (170)
103 PF00804 Syntaxin: Syntaxin; 47.1 68 0.0015 23.6 5.8 95 54-154 7-101 (103)
104 PF06143 Baculo_11_kDa: Baculo 46.7 22 0.00048 26.4 2.8 7 262-268 20-26 (84)
105 PF04888 SseC: Secretion syste 46.0 85 0.0018 28.8 7.3 39 251-289 33-74 (306)
106 PRK00846 hypothetical protein; 45.6 1.2E+02 0.0026 22.2 7.2 49 213-261 13-61 (77)
107 COG5278 Predicted periplasmic 44.9 2.1E+02 0.0046 25.0 11.0 19 266-284 172-191 (207)
108 PF05597 Phasin: Poly(hydroxya 44.2 1.7E+02 0.0037 23.6 7.9 48 52-100 81-129 (132)
109 PF12911 OppC_N: N-terminal TM 43.9 57 0.0012 21.6 4.4 13 284-296 26-38 (56)
110 TIGR02791 VirB5 P-type DNA tra 43.7 1.9E+02 0.0041 25.3 8.8 41 54-94 151-191 (220)
111 PF06024 DUF912: Nucleopolyhed 43.4 21 0.00046 27.4 2.4 18 278-295 64-81 (101)
112 PF05399 EVI2A: Ectropic viral 43.2 25 0.00053 30.8 3.0 24 273-296 124-147 (227)
113 KOG2678 Predicted membrane pro 43.1 2.4E+02 0.0052 25.0 10.8 58 208-268 145-203 (244)
114 PF10749 DUF2534: Protein of u 42.0 34 0.00075 25.2 3.1 19 271-289 8-27 (85)
115 cd00193 t_SNARE Soluble NSF (N 41.8 98 0.0021 20.2 8.2 57 217-273 3-59 (60)
116 KOG3065 SNAP-25 (synaptosome-a 41.7 39 0.00084 30.9 4.2 36 231-266 97-132 (273)
117 COG5613 Uncharacterized conser 41.3 2.7E+02 0.0058 26.5 9.5 36 245-280 137-179 (400)
118 PF00482 T2SF: Type II secreti 41.0 58 0.0013 24.4 4.7 20 204-223 34-53 (124)
119 PF05961 Chordopox_A13L: Chord 40.9 35 0.00077 24.2 2.9 6 291-296 18-23 (68)
120 COG1315 Uncharacterized conser 40.9 1.8E+02 0.0039 29.0 8.7 100 9-115 373-485 (543)
121 PRK10935 nitrate/nitrite senso 40.0 2.7E+02 0.0058 27.3 10.4 9 275-283 151-159 (565)
122 PF10398 DUF2443: Protein of u 39.3 1.1E+02 0.0023 22.2 5.2 49 8-74 29-77 (79)
123 PF05377 FlaC_arch: Flagella a 39.0 67 0.0014 21.9 4.0 31 42-72 16-46 (55)
124 PF12751 Vac7: Vacuolar segreg 38.6 23 0.00051 33.8 2.3 19 278-296 305-323 (387)
125 COG4942 Membrane-bound metallo 37.9 3.4E+02 0.0074 26.4 10.1 62 207-268 39-100 (420)
126 TIGR02120 GspF general secreti 37.4 1.7E+02 0.0037 27.8 8.2 41 218-259 316-356 (399)
127 KOG2150 CCR4-NOT transcription 36.7 4.7E+02 0.01 26.5 11.1 90 50-159 8-97 (575)
128 KOG0972 Huntingtin interacting 36.4 3.5E+02 0.0077 25.1 9.9 67 87-159 230-296 (384)
129 PF11044 TMEMspv1-c74-12: Plec 35.0 66 0.0014 20.9 3.2 20 276-295 4-23 (49)
130 PF04906 Tweety: Tweety; Inte 34.3 1.3E+02 0.0028 29.1 6.8 7 275-281 185-191 (406)
131 PF11166 DUF2951: Protein of u 34.3 2.1E+02 0.0045 21.8 12.1 43 212-254 10-52 (98)
132 KOG1693 emp24/gp25L/p24 family 34.1 2.3E+02 0.005 24.7 7.4 17 210-226 128-144 (209)
133 PRK10573 type IV pilin biogene 33.7 2.4E+02 0.0052 26.8 8.6 40 217-256 110-149 (399)
134 PF08372 PRT_C: Plant phosphor 33.1 2.5E+02 0.0055 23.4 7.4 26 206-234 55-80 (156)
135 PF12575 DUF3753: Protein of u 33.0 38 0.00083 24.4 2.2 22 272-293 40-62 (72)
136 PF15102 TMEM154: TMEM154 prot 32.5 29 0.00064 28.5 1.7 9 290-298 75-83 (146)
137 PF12166 DUF3595: Protein of u 32.4 33 0.00072 33.1 2.4 23 275-297 62-84 (422)
138 PF09164 VitD-bind_III: Vitami 31.9 90 0.0019 22.1 3.8 15 176-190 26-40 (68)
139 COG3763 Uncharacterized protei 31.6 45 0.00097 23.9 2.3 9 289-297 16-24 (71)
140 PF00517 GP41: Retroviral enve 31.4 1.1E+02 0.0023 26.7 5.2 15 211-225 106-120 (204)
141 PF00429 TLV_coat: ENV polypro 31.0 1.3E+02 0.0028 30.5 6.4 33 211-243 433-465 (561)
142 COG4575 ElaB Uncharacterized c 30.4 2.6E+02 0.0056 21.7 10.1 28 268-299 76-103 (104)
143 PTZ00208 65 kDa invariant surf 30.0 53 0.0012 31.6 3.2 18 50-67 69-86 (436)
144 PRK11901 hypothetical protein; 29.5 53 0.0011 30.7 3.0 22 277-298 38-59 (327)
145 PF05478 Prominin: Prominin; 29.5 7.1E+02 0.015 26.4 27.2 72 222-296 359-436 (806)
146 PHA02662 ORF131 putative membr 29.2 45 0.00097 29.4 2.4 25 135-159 73-97 (226)
147 PF06160 EzrA: Septation ring 29.0 6.1E+02 0.013 25.6 20.3 73 36-112 56-129 (560)
148 PRK10573 type IV pilin biogene 28.9 3.3E+02 0.0073 25.8 8.7 56 203-259 300-355 (399)
149 PF12352 V-SNARE_C: Snare regi 28.7 1.9E+02 0.0042 19.7 10.0 53 215-267 10-62 (66)
150 KOG3838 Mannose lectin ERGIC-5 28.6 5.5E+02 0.012 24.9 13.2 36 214-253 378-413 (497)
151 PF01102 Glycophorin_A: Glycop 28.5 46 0.001 26.6 2.2 10 276-285 68-77 (122)
152 PHA02414 hypothetical protein 28.3 2.7E+02 0.0059 21.3 8.9 45 214-258 30-74 (111)
153 PF07544 Med9: RNA polymerase 28.0 1.3E+02 0.0027 22.1 4.3 29 208-236 54-82 (83)
154 KOG0994 Extracellular matrix g 27.6 9.2E+02 0.02 27.1 24.3 21 240-260 1597-1617(1758)
155 PF09371 Tex_N: Tex-like prote 27.3 2.9E+02 0.0063 23.8 7.1 64 186-256 17-88 (193)
156 PF05957 DUF883: Bacterial pro 27.0 2.6E+02 0.0057 20.6 11.3 15 223-237 5-19 (94)
157 KOG2991 Splicing regulator [RN 26.8 4.9E+02 0.011 23.7 13.5 26 206-231 285-310 (330)
158 PF06024 DUF912: Nucleopolyhed 26.6 40 0.00086 25.8 1.5 18 275-292 64-81 (101)
159 PF04995 CcmD: Heme exporter p 26.2 92 0.002 20.1 3.0 16 276-291 8-23 (46)
160 PF10717 ODV-E18: Occlusion-de 26.2 73 0.0016 23.6 2.7 17 280-296 27-43 (85)
161 PF13198 DUF4014: Protein of u 26.1 99 0.0021 22.2 3.2 6 269-274 8-13 (72)
162 PF14257 DUF4349: Domain of un 25.9 4.7E+02 0.01 23.2 9.3 18 231-248 177-194 (262)
163 smart00806 AIP3 Actin interact 25.5 6.4E+02 0.014 24.6 19.6 117 87-239 213-329 (426)
164 KOG0812 SNARE protein SED5/Syn 25.4 5.5E+02 0.012 23.8 10.7 80 203-289 227-308 (311)
165 PRK13673 hypothetical protein; 24.8 1.6E+02 0.0034 23.4 4.5 36 260-295 75-113 (118)
166 PRK14710 hypothetical protein; 24.6 98 0.0021 22.2 3.0 13 275-287 9-21 (86)
167 TIGR02230 ATPase_gene1 F0F1-AT 24.5 2.6E+02 0.0055 21.5 5.5 20 255-274 18-37 (100)
168 PF03233 Cauli_AT: Aphid trans 24.4 4.3E+02 0.0093 22.2 8.1 14 39-52 82-95 (163)
169 PF06738 DUF1212: Protein of u 24.4 1.1E+02 0.0024 25.8 4.0 29 250-278 77-106 (193)
170 smart00502 BBC B-Box C-termina 24.1 3.2E+02 0.0069 20.6 8.7 65 203-267 21-87 (127)
171 PRK11020 hypothetical protein; 23.5 3.7E+02 0.0081 21.2 8.5 48 52-99 3-50 (118)
172 PF05667 DUF812: Protein of un 23.4 8.1E+02 0.018 25.1 21.7 39 211-249 545-583 (594)
173 PF12438 DUF3679: Protein of u 23.0 77 0.0017 21.7 2.1 11 285-295 7-17 (56)
174 PF04639 Baculo_E56: Baculovir 23.0 70 0.0015 29.4 2.5 25 275-299 276-300 (305)
175 PF11669 WBP-1: WW domain-bind 22.7 83 0.0018 24.2 2.6 10 275-284 21-30 (102)
176 PTZ00464 SNF-7-like protein; P 22.6 3.3E+02 0.0071 23.8 6.6 22 78-99 122-143 (211)
177 PRK06665 flgK flagellar hook-a 22.5 8.5E+02 0.019 25.0 13.7 43 8-54 90-133 (627)
178 COG3162 Predicted membrane pro 22.5 83 0.0018 24.2 2.5 14 271-284 21-35 (102)
179 PF14992 TMCO5: TMCO5 family 22.4 6.1E+02 0.013 23.3 13.1 56 202-257 119-174 (280)
180 KOG1094 Discoidin domain recep 22.2 54 0.0012 33.5 1.8 25 275-299 390-414 (807)
181 PHA02690 hypothetical protein; 22.1 3.3E+02 0.0071 20.0 6.5 54 241-294 8-61 (90)
182 PF05008 V-SNARE: Vesicle tran 21.9 3E+02 0.0064 19.4 8.7 29 209-237 21-49 (79)
183 PF06694 Plant_NMP1: Plant nuc 21.9 4.4E+02 0.0095 24.5 7.4 34 38-71 166-199 (325)
184 PF08700 Vps51: Vps51/Vps67; 21.9 3.1E+02 0.0067 19.6 6.4 37 210-246 48-84 (87)
185 PRK10132 hypothetical protein; 21.6 3.9E+02 0.0085 20.7 11.0 79 220-299 16-106 (108)
186 COG4238 Murein lipoprotein [Ce 21.4 3.3E+02 0.0072 19.8 6.7 33 240-272 38-70 (78)
187 COG3388 Predicted transcriptio 21.2 2.9E+02 0.0063 21.1 5.1 30 43-72 69-98 (101)
188 TIGR02120 GspF general secreti 21.2 4.9E+02 0.011 24.7 8.2 56 205-260 100-155 (399)
189 KOG0250 DNA repair protein RAD 21.2 1.1E+03 0.024 25.9 24.8 53 203-255 362-415 (1074)
190 KOG2927 Membrane component of 21.0 72 0.0016 30.2 2.3 21 275-295 189-209 (372)
191 PF03935 SKN1: Beta-glucan syn 20.9 81 0.0018 31.4 2.7 23 275-297 44-66 (504)
192 COG2966 Uncharacterized conser 20.8 1.5E+02 0.0033 26.7 4.3 41 244-284 93-134 (250)
193 TIGR03141 cytochro_ccmD heme e 20.7 1.4E+02 0.003 19.2 3.0 15 276-290 9-23 (45)
194 PF06789 UPF0258: Uncharacteri 20.6 1.1E+02 0.0024 25.4 3.0 27 259-285 114-140 (159)
195 PF12022 DUF3510: Domain of un 20.6 3.1E+02 0.0066 21.7 5.6 32 41-72 71-102 (125)
196 COG3736 VirB8 Type IV secretor 20.5 3.1E+02 0.0066 24.6 6.0 6 290-295 62-67 (239)
197 PF06785 UPF0242: Uncharacteri 20.3 7.5E+02 0.016 23.5 14.0 28 130-157 195-222 (401)
198 PF07798 DUF1640: Protein of u 20.2 5.2E+02 0.011 21.6 13.4 15 263-277 142-158 (177)
199 COG1459 PulF Type II secretory 20.1 4.4E+02 0.0095 25.4 7.5 57 203-259 95-151 (397)
200 PF03310 Cauli_DNA-bind: Cauli 20.1 4.6E+02 0.0099 20.9 8.9 23 44-66 3-25 (121)
201 KOG0721 Molecular chaperone (D 20.1 1.1E+02 0.0023 27.2 3.0 52 245-296 33-85 (230)
202 PF14812 PBP1_TM: Transmembran 20.1 5.9 0.00013 29.3 -4.0 6 277-282 67-72 (81)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-56 Score=402.79 Aligned_cols=284 Identities=32% Similarity=0.535 Sum_probs=247.1
Q ss_pred CCchhhhhhhhhHHhhHhhhhhhhhcccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChh
Q 022319 1 MNDLMTKSFLSYVELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGK 80 (299)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~ 80 (299)
|||++..+|..+. ..|+|++ +++...+.+.++..|+.||..|++|+..|..+...+.+|..+|..++. ++.
T Consensus 1 M~d~~~~~~~~~~------~~~~e~~-~~~~~~~~~~~~~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~--~~~ 71 (297)
T KOG0810|consen 1 MNDRLSELLARSV------SEDNELD-DVEGHTGSADGDSNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLH--SPN 71 (297)
T ss_pred CccccHHHHcCch------hhccccc-ccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc--ccc
Confidence 9999999999887 5677776 443211223345789999999999999999999999999999976554 455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 81 VLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVL 160 (299)
Q Consensus 81 ~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~ 160 (299)
..+.++++|+.++.++.+.++.|+.+|+.+++++...+.. .+.++..|+|++|+..++++|.++|.+|+.+|.+|+
T Consensus 72 ~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~----~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r 147 (297)
T KOG0810|consen 72 ADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQ----NRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYR 147 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999998753211 123456799999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCccchhh------hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 161 SDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEILE------GKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAV 234 (299)
Q Consensus 161 ~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~~~~~q------~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~ 234 (299)
.+|+.++.|+|..+.|..++||+++.++++|++++|++ |..+.+|.++++||.+|.+||++|.|||+||.|||+
T Consensus 148 ~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~ 227 (297)
T KOG0810|consen 148 EEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAV 227 (297)
T ss_pred HHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998766655544899999999999999999988 345699999999999999999999999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHhhc
Q 022319 235 LVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVWAVGLIILLVCLISLLT 297 (299)
Q Consensus 235 LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~iIv~lvi~~~i~~ 297 (299)
||+.||||||+||+||.+|.+||++|..++.+|.+||+++ ||.||+|++++|+++|+++++++
T Consensus 228 LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~ 291 (297)
T KOG0810|consen 228 LVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVV 291 (297)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999 88888877777777777777754
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.9e-39 Score=276.34 Aligned_cols=236 Identities=19% Similarity=0.330 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 022319 43 TQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQ 122 (299)
Q Consensus 43 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~ 122 (299)
..|..++..|+.+++.++..+.++..+|.+++...+......+++.|+..+.++..+-..++..++..+...-
T Consensus 21 ~~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i------- 93 (280)
T COG5074 21 VTFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI------- 93 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc-------
Confidence 3577899999999999999999999999998877777778889999999999999999999999998876521
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCc-cchhh---
Q 022319 123 AFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGK-VEILE--- 198 (299)
Q Consensus 123 ~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~-~~~~q--- 198 (299)
+ +..++.|-...+++|.+++++|+.++.+|+..|+++.+| |+.|+.|++|++|+++.+.+.++ ++|.|
T Consensus 94 -h------l~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rr-Qy~Ia~P~ATEdeve~aInd~nG~qvfsqalL 165 (280)
T COG5074 94 -H------LANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARR-QYIIAQPEATEDEVEAAINDVNGQQVFSQALL 165 (280)
T ss_pred -c------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-hhhhcCCccchHHHHHHhcccchHHHHHHHHH
Confidence 1 234678888999999999999999999999999999974 56788899999999999987554 55655
Q ss_pred -----hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022319 199 -----GKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKK 273 (299)
Q Consensus 199 -----~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~ 273 (299)
|.++.+|.++++||.+|.+||++|.||.+||+||+.||.+|.|++|.|+.|++++..+|+.|+.++.+|.+|.|+
T Consensus 166 ~anr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRa 245 (280)
T COG5074 166 NANRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARA 245 (280)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h---hHHHHHHHHHHHHHHHHHH
Q 022319 274 R---SWVCWVWAVGLIILLVCLI 293 (299)
Q Consensus 274 ~---k~~c~~i~~~iIv~lvi~~ 293 (299)
+ ||+||+||++|||++++++
T Consensus 246 aRkkki~c~gI~~iii~viv~vv 268 (280)
T COG5074 246 ARKKKIRCYGICFIIIIVIVVVV 268 (280)
T ss_pred HHhcceehhhhHHHHHHHHHHHH
Confidence 8 8899999988877765444
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=254.46 Aligned_cols=239 Identities=18% Similarity=0.189 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q 022319 42 LTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLS 121 (299)
Q Consensus 42 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~ 121 (299)
.|.|.+.+++|+..+.+++.++++|.+.|.+++ .|+.+|..+-+.+|+.++.+|+.+++.+.+.|+.+.....
T Consensus 56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n------ 128 (305)
T KOG0809|consen 56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLN------ 128 (305)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------
Confidence 678999999999999999999999999999977 7788888888999999999999999999999999976532
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccCCCCCCHHHHHHHhhCCCccchhhh
Q 022319 122 QAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRR--YYNATGEEPSEDVIEKVISGSGKVEILEG 199 (299)
Q Consensus 122 ~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr--~~~i~~~~~tdeeie~~le~~~~~~~~q~ 199 (299)
.+.+.+..++++.+..+..+++.++.+|+..|..|.+..+.+-++- +..-..|.....+.+++... .|.+.
T Consensus 129 ---~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~----~~qe~ 201 (305)
T KOG0809|consen 129 ---QLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDR----TFQEQ 201 (305)
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhh----hHHHH
Confidence 1122345678899999999999999999999999988877766532 22111111111111111111 11111
Q ss_pred h---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h
Q 022319 200 K---TEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-S 275 (299)
Q Consensus 200 ~---~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k 275 (299)
+ -...-..+.+|.+||.+|.+||.||++||+||+.||.+||++||||||||+++..+|+.|.++|.||..|||++ |
T Consensus 202 ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k 281 (305)
T KOG0809|consen 202 QLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKK 281 (305)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCc
Confidence 1 12455678899999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022319 276 WVCWVWAVGLIILLVCLIS 294 (299)
Q Consensus 276 ~~c~~i~~~iIv~lvi~~~ 294 (299)
+.||++++++||++++++-
T Consensus 282 ~~~i~~L~l~ii~llvlli 300 (305)
T KOG0809|consen 282 MKVILMLTLLIIALLVLLI 300 (305)
T ss_pred eEehHHHHHHHHHHHHHHH
Confidence 6777777666665544443
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.7e-30 Score=227.69 Aligned_cols=234 Identities=22% Similarity=0.262 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 022319 43 TQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQ 122 (299)
Q Consensus 43 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~ 122 (299)
..|-..+.+|...|..+...+..|.+.+..+ .++.+..+++.+++.....+.++.+.+...|+.+...
T Consensus 17 ~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~l---gt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~--------- 84 (269)
T KOG0811|consen 17 FDFQQLAQEIAANIQRINQQVLSLLRFLNSL---GTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTL--------- 84 (269)
T ss_pred CcHhHHHHHHHHHHHHHhHHHHHHHHHHHHc---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 4688999999999999999999999999753 4566777899999999999999999999999888764
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC---HHHH--HHHhhCCCccc--
Q 022319 123 AFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPS---EDVI--EKVISGSGKVE-- 195 (299)
Q Consensus 123 ~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~t---deei--e~~le~~~~~~-- 195 (299)
++ +.+.+..+.+.+.|.+.|..++++|+.+|...-...+ +- ....+...+ +++- ......+....
T Consensus 85 -~~--~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~---~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~ 156 (269)
T KOG0811|consen 85 -RL--ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK--IP---MVARGSQNSQQLDEESPRVDELSNNGSQSQQ 156 (269)
T ss_pred -cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--cc---ccccccccchhhhhhhhhhhhhhccchhhhh
Confidence 11 3456888999999999999999999999976554443 11 000111112 1111 11111111110
Q ss_pred ----hhhhh--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 196 ----ILEGK--TEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQ 269 (299)
Q Consensus 196 ----~~q~~--~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~ 269 (299)
-++.. ....+..+++|...|.+||+.|.|||+||+||+.||++||++||+||+||++|..||+.|..+|.+|.+
T Consensus 157 q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~ 236 (269)
T KOG0811|consen 157 QLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAK 236 (269)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 124678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh-hHHHHHHHHHHHHHHHHHHHhh
Q 022319 270 TRKKR-SWVCWVWAVGLIILLVCLISLL 296 (299)
Q Consensus 270 ~qk~~-k~~c~~i~~~iIv~lvi~~~i~ 296 (299)
|++++ ||.|+++|++++++++|.+.++
T Consensus 237 yq~~~~k~~~~ll~v~~~v~lii~l~i~ 264 (269)
T KOG0811|consen 237 YQRKARKKKCILLLVGGPVGLIIGLIIA 264 (269)
T ss_pred HHHHhcCchhhhhHHHHHHHHHHHHHHH
Confidence 99999 9999999998888887776664
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.2e-24 Score=190.94 Aligned_cols=243 Identities=15% Similarity=0.170 Sum_probs=156.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhh
Q 022319 39 EENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINR 118 (299)
Q Consensus 39 ~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~ 118 (299)
+...|.|......|...+..+..++..+..-+.+. ..+++.+..+-.++|+.+...++.....+.+-++......+.
T Consensus 30 ~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~-~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s-- 106 (283)
T COG5325 30 DALTPTFILSAASVDQELTAVRRSISRLGKVYAKH-TEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQS-- 106 (283)
T ss_pred hccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34457899999999999999999999999998873 445566555556667777766665555555444444333211
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCHHHHHHHhhCCCccchh
Q 022319 119 MLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEE-PSEDVIEKVISGSGKVEIL 197 (299)
Q Consensus 119 ~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~-~tdeeie~~le~~~~~~~~ 197 (299)
.+ ..+..-.-.+.......+++.....|+.-+..|.++.+. ...+.. +.++|-+........++..
T Consensus 107 ~~------~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~-------~~~~~~~l~eee~e~~~~~~~sq~~l 173 (283)
T COG5325 107 SF------LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRN-------KNNDQHPLEEEEDEESLSSLGSQQTL 173 (283)
T ss_pred HH------HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHh-------cccccCchhhhhhhhhhhccchhhHH
Confidence 00 000000001111222333444444444444333333211 111111 2233333334433333333
Q ss_pred h--hh--ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022319 198 E--GK--TE--KDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTR 271 (299)
Q Consensus 198 q--~~--~~--~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~q 271 (299)
| +. .+ .....+.+|.++|.+|.++|.||+++|.||+++|.+||+.||+||+|++++.+|++.|.++|.+|..||
T Consensus 174 qq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hq 253 (283)
T COG5325 174 QQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQ 253 (283)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHH
Confidence 3 21 12 333448899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh-hHHHHHHHHHHHHHHHHHHHhhc
Q 022319 272 KKR-SWVCWVWAVGLIILLVCLISLLT 297 (299)
Q Consensus 272 k~~-k~~c~~i~~~iIv~lvi~~~i~~ 297 (299)
|++ ||-.|++++++||.+++++.+..
T Consensus 254 rrt~k~~~~~Llil~vv~lfv~l~~kl 280 (283)
T COG5325 254 RRTKKCRFYLLLILLVVLLFVSLIKKL 280 (283)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHh
Confidence 999 88666666666666767666654
No 6
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.89 E-value=6.5e-22 Score=164.50 Aligned_cols=149 Identities=30% Similarity=0.465 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhh
Q 022319 42 LTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLS 121 (299)
Q Consensus 42 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~ 121 (299)
|+.||..|+.|+..|..|+.++..|+.+|..+++.++ ....++.+|+.++.+++++++.++..|+.|+..+.. .
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~--~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~---~- 74 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPD--ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQ---N- 74 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-
Confidence 5799999999999999999999999999999877655 356899999999999999999999999999987542 1
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCccchhh
Q 022319 122 QAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEILE 198 (299)
Q Consensus 122 ~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~~~~~q 198 (299)
...+++++.|++++|+.+|+++|.++|++|+.+|..|+.+|+++++|+ +.+.+|++||||+++++++|++++|++
T Consensus 75 -~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq-~~i~~~~~tdeei~~~~~~~~~~~~~~ 149 (151)
T cd00179 75 -EALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQ-LEITGGEATDEELEDMLESGNSEIFTS 149 (151)
T ss_pred -cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCChHHHHHHHHcCChhhhcC
Confidence 122367889999999999999999999999999999999999999966 456789999999999999998888875
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.2e-20 Score=161.77 Aligned_cols=237 Identities=18% Similarity=0.231 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 022319 43 TQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQ 122 (299)
Q Consensus 43 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~ 122 (299)
.+|...++.|..+|.....+++.|..|.++ ++..++. ..+|.++..-|+.+|-.++..+.+++.+..
T Consensus 41 seF~~~A~~Ig~~is~T~~kl~kLa~lAKr-ks~f~Dr------------~VeI~eLT~iikqdi~sln~~i~~Lqei~~ 107 (311)
T KOG0812|consen 41 SEFNKKASRIGKEISQTGAKLEKLAQLAKR-KSLFDDR------------PVEIQELTFIIKQDITSLNSQIAQLQEIVK 107 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccCc------------chhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999987 5555532 223344445555555555555444433332
Q ss_pred hccCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC-------CC----CCHHHHHHH--
Q 022319 123 AFKEGSSV--DRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATG-------EE----PSEDVIEKV-- 187 (299)
Q Consensus 123 ~~~~~s~~--~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~-------~~----~tdeeie~~-- 187 (299)
..+..+.. .-.-++++..|..++..+...|+.+.+.-....++.-.|+....++ |. +.......+
T Consensus 108 ~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~ 187 (311)
T KOG0812|consen 108 ANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVD 187 (311)
T ss_pred HhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcC
Confidence 22222211 2345788889999999999999988653322233222233222221 10 000001111
Q ss_pred -----------hhCCCccchhh-hh---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 022319 188 -----------ISGSGKVEILE-GK---TEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVAN 252 (299)
Q Consensus 188 -----------le~~~~~~~~q-~~---~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~ 252 (299)
+..|+.. ..| .+ -.....++++|.+++++||.+|.||.+||.+||.||.+|||+|.|||.||..
T Consensus 188 ~~~~~sq~~~~ln~gd~~-~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~d 266 (311)
T KOG0812|consen 188 PKDEASQDVESLNMGDSS-NPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDD 266 (311)
T ss_pred chhhcccccccccccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 1111110 111 00 1134689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022319 253 AGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLI 293 (299)
Q Consensus 253 a~~~ve~a~~eL~kA~~~qk~~k~~c~~i~~~iIv~lvi~~ 293 (299)
+..+++.|..+|.|.-..-+++||+++-|+.++||+++|++
T Consensus 267 s~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfv 307 (311)
T KOG0812|consen 267 SDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFV 307 (311)
T ss_pred hhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888889999998887777654443
No 8
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.66 E-value=4.9e-15 Score=117.71 Aligned_cols=116 Identities=34% Similarity=0.538 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 022319 41 NLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRML 120 (299)
Q Consensus 41 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~ 120 (299)
.|+.||..|++|+..|..|+.++..|..+|..+++.++ ....++.+|+.++.+++.+++.|+..|+.|......
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~---- 75 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPD--ADKELREKLERLIDDIKRLAKEIRAKLKELEKENLE---- 75 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh----
Confidence 47899999999999999999999999999999876654 346789999999999999999999999999987542
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 121 SQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYK 164 (299)
Q Consensus 121 ~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k 164 (299)
....++++.|++++++.+|.++|+++|.+|+.+|..|+.+|+
T Consensus 76 --~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 76 --NRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred --hcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 112246778999999999999999999999999988876653
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.56 E-value=4e-14 Score=100.33 Aligned_cols=63 Identities=35% Similarity=0.501 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022319 210 ERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRK 272 (299)
Q Consensus 210 ~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk 272 (299)
+|+++|..|+++|.+|++||.+|+.+|.+||++||+|+.||+.|..++..|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999999999986
No 10
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.52 E-value=7e-13 Score=102.49 Aligned_cols=103 Identities=24% Similarity=0.343 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 022319 41 NLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRML 120 (299)
Q Consensus 41 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~ 120 (299)
+||.||++|++|+..|..|..++++|..+|.+++..++. +..++++|+.++.+|+.+++.|+..|+.|+..+..
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~--d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~---- 74 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQ--DSELKRELDELTDEIKQLFQKIKKRLKQLSKDNED---- 74 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----
Confidence 479999999999999999999999999999998877662 37889999999999999999999999999988541
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 022319 121 SQAFKEGSSVDRTRISVTNGLRVKLRDLM 149 (299)
Q Consensus 121 ~~~~~~~s~~~rir~~q~~~L~~~f~~~~ 149 (299)
+++.++.+++.|++++++..|+++|+++|
T Consensus 75 ~~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 75 SEGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 11345567789999999999999999987
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.44 E-value=4.6e-13 Score=93.46 Aligned_cols=59 Identities=37% Similarity=0.520 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 209 KERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYA 267 (299)
Q Consensus 209 ~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA 267 (299)
++|++++..|+.+|.+|++||.+|+.+|.+||++||+|++|++.+..++..|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999999999999999999999999999875
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.31 E-value=1.4e-11 Score=87.43 Aligned_cols=64 Identities=34% Similarity=0.487 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 204 DIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYA 267 (299)
Q Consensus 204 ~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA 267 (299)
....+++|+.+|.+|+++|.+|+.||.+|+.+|.+||++||+|++|++.+..++..|...|.+|
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 4567889999999999999999999999999999999999999999999999999999999875
No 13
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.2e-06 Score=75.77 Aligned_cols=225 Identities=19% Similarity=0.198 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhh
Q 022319 44 QFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQA 123 (299)
Q Consensus 44 ~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~ 123 (299)
.|+....++......++....+-..+-.. ..++. +.++..+. ..|...+++++.........|..
T Consensus 7 p~~~v~~e~~k~~~~~~~~~~r~~~~~~~-----~~~~~-------~~~t~~lr---~~i~~~~edl~~~~~il~~~~~~ 71 (235)
T KOG3202|consen 7 PFFRVKNETLKLSEEIQGLYQRRSELLKD-----TGSDA-------EELTSVLR---RSIEEDLEDLDELISILERNPSK 71 (235)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccchh-------HHHHHHHH---HHhHHHHHHHHHHHHHHHhCccc
Confidence 48888877777777777777776666653 11111 22222222 22333333333332221112212
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhC-CCccchhhhhch
Q 022319 124 FKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISG-SGKVEILEGKTE 202 (299)
Q Consensus 124 ~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~-~~~~~~~q~~~~ 202 (299)
.+....+..-|+..+..+..++...-..|... .+. ...-|. ...+++..+...+.+-.. |.. +.++..+
T Consensus 72 ~~ide~El~~R~~~i~~lr~q~~~~~~~~~~~--~~~----~~~~r~--~l~~~~~~~~~~~~~~~~~~~D--~v~~~~~ 141 (235)
T KOG3202|consen 72 FGIDEFELSRRRRFIDNLRTQLRQMKSKMAMS--GFA----NSNIRD--ILLGPEKSPNLDEAMSRASGLD--NVQEIVQ 141 (235)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccc----cccchh--hhcCCCCCCchhhhHHHhhccC--cHHHHHH
Confidence 22222345778888888888877777766651 111 001111 223343333211222111 111 1222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWA 282 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~k~~c~~i~ 282 (299)
..-..+++-...+..|+.+|.-++.+=..|+.=+++||.+||..++-++.+..-+..+.+.|.+-.+.+.....||++++
T Consensus 142 ~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~ 221 (235)
T KOG3202|consen 142 LQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILL 221 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence 44456778888999999999999999999999999999999999999999999999999999886662222244555544
Q ss_pred HHHHHHHHHHH
Q 022319 283 VGLIILLVCLI 293 (299)
Q Consensus 283 ~~iIv~lvi~~ 293 (299)
+++++++++++
T Consensus 222 l~~~~~lvv~i 232 (235)
T KOG3202|consen 222 LVGLLLLVVII 232 (235)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 14
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=98.55 E-value=4.1e-06 Score=64.79 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccCCChHH
Q 022319 52 IKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVD 131 (299)
Q Consensus 52 I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~~~~s~~~ 131 (299)
|...|..|+.++..|+++...+. ++.|..+++++|+.++..++.+++.+...|+.+.... ......
T Consensus 1 is~~l~~in~~v~~l~k~~~~lG---t~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~-----------~~~~~~ 66 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQLG---TPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS-----------SDRSND 66 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH---------------HH
T ss_pred CchHHHHHHHHHHHHHHHHHHhC---CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhhh
Confidence 56788999999999999998753 5678899999999999999999999999999997640 122356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 132 RTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYK 164 (299)
Q Consensus 132 rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k 164 (299)
+..+.+...|.+.|..++++|+.+|..|....+
T Consensus 67 ~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 67 RQQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777899999999999999999999887765543
No 15
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0075 Score=55.09 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVW 281 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i 281 (299)
.-+....+--++++.||+.+.|+..|=.-|+.=|-+|..-||.|-.++..|..++.+|+..|.+|.....+. +|+.+.+
T Consensus 222 ~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~l 301 (316)
T KOG3894|consen 222 RLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFL 301 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHH
Confidence 444555566789999999999999999999999999999999999999999999999999999999998888 8877776
Q ss_pred HHHHHHHHHH
Q 022319 282 AVGLIILLVC 291 (299)
Q Consensus 282 ~~~iIv~lvi 291 (299)
+++-.++|++
T Consensus 302 lvlsf~lLFl 311 (316)
T KOG3894|consen 302 LVLSFSLLFL 311 (316)
T ss_pred HHHHHHHHHH
Confidence 6655555543
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.83 E-value=0.00086 Score=50.55 Aligned_cols=83 Identities=11% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh-hHHHHHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRK-KR-SWVCWVWAVGLIILLV 290 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk-~~-k~~c~~i~~~iIv~lv 290 (299)
+.+.++...+.++..++.+=-.-+.+.|+-|+.++...+.-......-.+.-.+.++... ++ |+++++++++++++++
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~ 82 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILI 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhH
Confidence 357788999999999998888888899999999999876666555544443333322222 22 5555555555555555
Q ss_pred HHHHh
Q 022319 291 CLISL 295 (299)
Q Consensus 291 i~~~i 295 (299)
|++++
T Consensus 83 i~~~~ 87 (89)
T PF00957_consen 83 IIIVI 87 (89)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 55544
No 17
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0016 Score=51.04 Aligned_cols=85 Identities=14% Similarity=0.174 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHH
Q 022319 212 HEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANA---GNFISGGTNSLYYANQTRKKR-SWVCWVWAVGLII 287 (299)
Q Consensus 212 ~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a---~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~iIv 287 (299)
.+.+++++..+.|+-+++.+==.=|-+-|+-++.++.-.++- ...-+.+...|++ +|-=++ |++.|++++++|+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkr--k~wWkn~Km~~il~~v~~i~ 105 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKR--KMWWKNCKMRIILGLVIIIL 105 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999998888999999999998754433 2222222223321 222233 6666666666666
Q ss_pred HHHHHHHhhcc
Q 022319 288 LLVCLISLLTS 298 (299)
Q Consensus 288 ~lvi~~~i~~~ 298 (299)
++||++.+++|
T Consensus 106 l~iiii~~~~~ 116 (116)
T KOG0860|consen 106 LVVIIIYIFLW 116 (116)
T ss_pred HHHHHHHHhcC
Confidence 67777777654
No 18
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.44 Score=43.96 Aligned_cols=94 Identities=9% Similarity=0.187 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHH
Q 022319 201 TEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCW 279 (299)
Q Consensus 201 ~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~ 279 (299)
.+...+++..=.+-|..|..=..+++.|-..=+.||..=...+.+-..+|+++.++|.+|...-.+ -+|+. -++||
T Consensus 201 iq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkk---aRK~k~i~ii~ 277 (297)
T KOG0810|consen 201 IQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKK---ARKWKIIIIII 277 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhceeeeehH
Confidence 334555666667777788888888888888888888877777888888888888888888655444 44455 33444
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 022319 280 VWAVGLIILLVCLISLLT 297 (299)
Q Consensus 280 ~i~~~iIv~lvi~~~i~~ 297 (299)
++++++|++++|+.|+.+
T Consensus 278 ~iii~~v~v~~i~~~~~~ 295 (297)
T KOG0810|consen 278 LIIIIVVLVVVIVVPLVL 295 (297)
T ss_pred HHHHHHHHhhhhcccccc
Confidence 444444455556555543
No 19
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.03 Score=43.77 Aligned_cols=78 Identities=24% Similarity=0.473 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHH
Q 022319 210 ERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVWAVGLIIL 288 (299)
Q Consensus 210 ~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~iIv~ 288 (299)
+=.+.+..|...|.-|..|=.|+..=|..|..++|.++.....+.......-..++.-.+. +. +.+||+++..+|++
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~ 110 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAF 110 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 3355588999999999999999999999999999999999999999999998888764443 44 77888877655544
Q ss_pred H
Q 022319 289 L 289 (299)
Q Consensus 289 l 289 (299)
+
T Consensus 111 f 111 (118)
T KOG3385|consen 111 F 111 (118)
T ss_pred H
Confidence 3
No 20
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.40 E-value=0.054 Score=48.79 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHH
Q 022319 214 AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVWAVGLII 287 (299)
Q Consensus 214 eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~iIv 287 (299)
|+..|.+++.+=... ++..+.+-..+|++.+..++.....+..+...|.. |.+++ +||.|++++++++
T Consensus 171 em~~La~~LK~~s~~---~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~---~~~~~~~~~~~~~i~~v~~ 239 (251)
T PF09753_consen 171 EMLSLARQLKENSLA---FSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKE---HSSKSWGCWTWLMIFVVII 239 (251)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHH
Confidence 444444444444444 46779999999999999999999999998888864 44455 6666655544333
No 21
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.03 E-value=6.1 Score=35.02 Aligned_cols=83 Identities=14% Similarity=0.343 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHH
Q 022319 206 QRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVWAVG 284 (299)
Q Consensus 206 ~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~ 284 (299)
.++..=.+-+..|..-..++.+|..+=..+|.-=..-+-.-+.|++++..++++|.+... |.+..|-. --+|++|+++
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaR-aaRkkki~c~gI~~iii~v 263 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSAR-AARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHH-HHHhcceehhhhHHHHHHH
Confidence 344444445555555666667777777788877777788899999999999999999955 55556666 5577777777
Q ss_pred HHHHH
Q 022319 285 LIILL 289 (299)
Q Consensus 285 iIv~l 289 (299)
|++++
T Consensus 264 iv~vv 268 (280)
T COG5074 264 IVVVV 268 (280)
T ss_pred HHHHH
Confidence 66665
No 22
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.22 E-value=9.1 Score=35.06 Aligned_cols=229 Identities=10% Similarity=0.143 Sum_probs=132.2
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 022319 34 LNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGK---VLRGLRDRMESDVASILRKAKIVKARLES- 109 (299)
Q Consensus 34 ~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~---~~~~l~~~i~~l~~~i~~~~~~ik~~lk~- 109 (299)
..|.-.....+.-..+..++..|+.+ ......|-.=...-... +.+.++.+|-.+.....+..+.++.....
T Consensus 55 lpP~wvd~~~ev~~~l~rvrrk~~eL----gk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~ 130 (305)
T KOG0809|consen 55 LPPAWVDVAEEVDYYLSRVRRKIDEL----GKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQL 130 (305)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 34443444455556666777777655 44555555422221222 34456667777777777776666666532
Q ss_pred --HHHhhhHhhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhccCCCC---CCH
Q 022319 110 --LDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRG---KVLSDYKEDLKRRYYNATGEE---PSE 181 (299)
Q Consensus 110 --l~~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~---~~~~~~k~~~~rr~~~i~~~~---~td 181 (299)
++..... ...+.--.++..++.+|...=..|-+--. .--..|...... .+..|+ .++
T Consensus 131 ~~~e~~~~~------------n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~---~~~~~dd~d~~~ 195 (305)
T KOG0809|consen 131 SPSERLLRK------------NAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDN---TVDLPDDEDFSD 195 (305)
T ss_pred ChHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccc---cccCcchhhhhh
Confidence 2211110 01233345566777777777776654322 112234444432 122221 222
Q ss_pred HHH---HHHhhCCCccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 022319 182 DVI---EKVISGSGKVEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFIS 258 (299)
Q Consensus 182 eei---e~~le~~~~~~~~q~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve 258 (299)
... +-+...++.. .. ...-.+|..=.+-|..|-.=..+|..|..|=++.|.-=+--|+++-..|+.|...+.
T Consensus 196 ~~~qe~ql~~~e~~~~-~~----~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~ 270 (305)
T KOG0809|consen 196 RTFQEQQLMLFENNEE-VV----REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELH 270 (305)
T ss_pred hhHHHHHHHHHhcchH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHH
Confidence 211 1222222221 12 244457777778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHH
Q 022319 259 GGTNSLYYANQTRKKR-SWVCWVWAVGLIILL 289 (299)
Q Consensus 259 ~a~~eL~kA~~~qk~~-k~~c~~i~~~iIv~l 289 (299)
+|...=+ +.++.- -++..++|+++++++
T Consensus 271 KAe~yQk---~~~k~~~i~~L~l~ii~llvll 299 (305)
T KOG0809|consen 271 KAERYQK---RNKKMKVILMLTLLIIALLVLL 299 (305)
T ss_pred HHHHHHh---cCCceEehHHHHHHHHHHHHHH
Confidence 9987654 567777 454444444444433
No 23
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=7.4 Score=33.98 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 022319 227 QVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLIIL 288 (299)
Q Consensus 227 ~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~k~~c~~i~~~iIv~ 288 (299)
+|=.+|-.=.+.|-+.|.+--.-.-++.+++.++.+-|..-.+.--++||.|..|+++.+++
T Consensus 149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~ 210 (220)
T KOG1666|consen 149 QIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLA 210 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333456789999888888888999999998888875555555588887776655443
No 24
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.74 E-value=2.2 Score=38.96 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 212 HEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY 266 (299)
Q Consensus 212 ~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~k 266 (299)
+..+.+|-.-+..|..|=.||+.=|+.|.+.||+|+++|+.+...|..++..+.+
T Consensus 217 D~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 217 DENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 4557788888888999999999999999999999999999999999988877653
No 25
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=88.07 E-value=14 Score=33.19 Aligned_cols=90 Identities=9% Similarity=0.161 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHH-H
Q 022319 203 KDIQRSKERHEAVM-DIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVC-W 279 (299)
Q Consensus 203 ~~l~~i~~R~~eI~-~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c-~ 279 (299)
..+..+-.+|+.++ +|...|..|..-.++=+... +..|..=..-++.+...++.-...|..+...-+.. +.-| |
T Consensus 152 ~~~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~ 228 (251)
T PF09753_consen 152 ASLEKILQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGC 228 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 45556666777777 67778777777777665554 44454444556777777777777777776666666 6666 3
Q ss_pred HHHHHHHHHHHHHHHh
Q 022319 280 VWAVGLIILLVCLISL 295 (299)
Q Consensus 280 ~i~~~iIv~lvi~~~i 295 (299)
+.++++++++++++..
T Consensus 229 ~~~~~i~~v~~~Fi~m 244 (251)
T PF09753_consen 229 WTWLMIFVVIIVFIMM 244 (251)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444443
No 26
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=86.03 E-value=13 Score=28.16 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 022319 45 FFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMI 116 (299)
Q Consensus 45 f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~ 116 (299)
|+...+++...|..++.....-..+.... . ...++..+..++......+...|.+|++.+..
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~----~------~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDT----S------SSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHC----C-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccC----C------CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899888888877666665554321 1 24556666777777777788888888877654
No 27
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=85.62 E-value=52 Score=34.78 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 215 VMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQT 270 (299)
Q Consensus 215 I~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~ 270 (299)
+..+-+.+..+..-+.+++.-+-.+ +...+..-..++..++........++..|
T Consensus 359 v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y 412 (806)
T PF05478_consen 359 VPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY 412 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 4466666666677777777777666 55566666666666666666665554444
No 28
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=84.76 E-value=3.4 Score=28.62 Aligned_cols=28 Identities=4% Similarity=0.118 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 022319 261 TNSLYYANQTRKKRSWVCWVWAVGLIIL 288 (299)
Q Consensus 261 ~~eL~kA~~~qk~~k~~c~~i~~~iIv~ 288 (299)
.++..+..+..++.+|+.++++++++++
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v 52 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAV 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444467766666554443
No 29
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.61 E-value=32 Score=31.40 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWA 282 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~k~~c~~i~ 282 (299)
.....+++=+.+|..+..=+.+|..|..+=+.+|..=.+-|++-..||+++..++.+|...=.++++.. --.+|++++
T Consensus 177 eR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~--~~ll~v~~~ 254 (269)
T KOG0811|consen 177 EREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK--CILLLVGGP 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hhhhHHHHH
Confidence 445567777899999999999999999999999999999999999999999999999998876543333 244566666
Q ss_pred HHHHHHHHHH
Q 022319 283 VGLIILLVCL 292 (299)
Q Consensus 283 ~~iIv~lvi~ 292 (299)
+++||+++|+
T Consensus 255 v~lii~l~i~ 264 (269)
T KOG0811|consen 255 VGLIIGLIIA 264 (269)
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 30
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=84.33 E-value=32 Score=31.29 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSW 276 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~k~ 276 (299)
....+|..=++-|..|-.=..+|..+..+=+.+|.-=+.-|+++-.|...|.....+|..+=+ +.+|+...
T Consensus 192 er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqr---rt~k~~~~ 262 (283)
T COG5325 192 ERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQR---RTKKCRFY 262 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHh---hhccchhh
Confidence 555678888899999999999999999999999999999999999999999999999998876 45566633
No 31
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=83.43 E-value=17 Score=27.28 Aligned_cols=61 Identities=10% Similarity=0.202 Sum_probs=30.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 022319 236 VETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLISLLTSR 299 (299)
Q Consensus 236 V~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~k~~c~~i~~~iIv~lvi~~~i~~~~ 299 (299)
..+|-+.+.....-...-..-+..+.+=+.+-.+..+.-||+.|+.++ +++++++-|++||
T Consensus 31 L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~---~f~~~v~yI~~rR 91 (92)
T PF03908_consen 31 LEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFL---FFLLVVLYILWRR 91 (92)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHhhhc
Confidence 344555555555555555556666666655433333333665544332 2233444444554
No 32
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=82.37 E-value=19 Score=28.50 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=17.1
Q ss_pred CCchhhhhhhhhHHhhHhhh
Q 022319 1 MNDLMTKSFLSYVELKKQAQ 20 (299)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (299)
++|++.|.++|+.-|+++..
T Consensus 4 ~~~~l~G~liGgiiGa~aaL 23 (115)
T COG4980 4 GKDFLFGILIGGIIGAAAAL 23 (115)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 46899999999998888865
No 33
>PRK14762 membrane protein; Provisional
Probab=82.27 E-value=2.1 Score=24.09 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 022319 277 VCWVWAVGLIILLVCLISLL 296 (299)
Q Consensus 277 ~c~~i~~~iIv~lvi~~~i~ 296 (299)
+.|++.++.++.+.++.|++
T Consensus 4 ~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 4 ILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777764
No 34
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=81.28 E-value=18 Score=26.30 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=43.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 022319 38 DEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIV 103 (299)
Q Consensus 38 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i 103 (299)
+...+...+.....+...|......++.|......+. ...+.+...++..++.+...-..+...+
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~-~~~~~~~~~i~~~~~~l~~~w~~l~~~~ 96 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLI-DSGPEDSDEIQEKLEELNQRWEALCELV 96 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888999999999999999999988888763 3334455555555555544444333333
No 35
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=79.67 E-value=12 Score=25.69 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 022319 214 AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFIS 258 (299)
Q Consensus 214 eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve 258 (299)
+++.++..+..|-..|.....=-..+++.|++.|.+++.-..|+-
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv 46 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMV 46 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999988776653
No 36
>PRK04325 hypothetical protein; Provisional
Probab=79.24 E-value=21 Score=25.80 Aligned_cols=51 Identities=10% Similarity=0.188 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 022319 207 RSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGG 260 (299)
Q Consensus 207 ~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a 260 (299)
.+++| |..||..+.-.-+...+|+..|.+|...|++....+..-...+...
T Consensus 6 ~~e~R---i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 6 EMEDR---ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455 8999999999999999999999999999999998887776655543
No 37
>PRK00295 hypothetical protein; Provisional
Probab=77.88 E-value=22 Score=25.23 Aligned_cols=46 Identities=7% Similarity=0.041 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 022319 215 VMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGG 260 (299)
Q Consensus 215 I~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a 260 (299)
|..||..+.-.-+...+|+..|..|...||.....+..-...+...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999998887776665543
No 38
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=77.33 E-value=26 Score=25.82 Aligned_cols=8 Identities=38% Similarity=0.409 Sum_probs=3.3
Q ss_pred HHHHhhhh
Q 022319 267 ANQTRKKR 274 (299)
Q Consensus 267 A~~~qk~~ 274 (299)
|..+++++
T Consensus 47 a~~F~k~a 54 (89)
T PF00957_consen 47 AKQFKKNA 54 (89)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 44444433
No 39
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.70 E-value=18 Score=28.58 Aligned_cols=8 Identities=38% Similarity=0.289 Sum_probs=3.8
Q ss_pred HHHHhhhh
Q 022319 267 ANQTRKKR 274 (299)
Q Consensus 267 A~~~qk~~ 274 (299)
|..+.+++
T Consensus 73 as~F~~~A 80 (116)
T KOG0860|consen 73 ASQFEKTA 80 (116)
T ss_pred HHHHHHHH
Confidence 44444444
No 40
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=76.67 E-value=0.84 Score=37.58 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 022319 278 CWVWAVGLIILLVCLISLLT 297 (299)
Q Consensus 278 c~~i~~~iIv~lvi~~~i~~ 297 (299)
++++++++++++||++||.+
T Consensus 137 ~Li~~~vc~~ilVivVpi~t 156 (159)
T PF06789_consen 137 ALIVLAVCAVILVIVVPICT 156 (159)
T ss_pred HHHHHHHHHheEEEEEEEEe
Confidence 44444444666777777754
No 41
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=75.97 E-value=56 Score=28.88 Aligned_cols=50 Identities=12% Similarity=0.204 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLY 265 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~ 265 (299)
+++..|.+++.+-.--|++ -+.+-.+++-.-+.-+.....-......-+.
T Consensus 158 esll~LArslKtnalAfqs---alkeDnQvl~~~~k~~D~N~~~L~~~Serve 207 (244)
T KOG2678|consen 158 ESLLKLARSLKTNALAFQS---ALKEDNQVLGAAEKGIDVNSQGLMDVSERVE 207 (244)
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHhhHHHHHHHHHHHhHHHHHHHhhhHHHH
Confidence 3444555554444444432 2333333333333334444444444444443
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.83 E-value=54 Score=28.63 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 225 LHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY 266 (299)
Q Consensus 225 L~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~k 266 (299)
..+.-.+|..-+.+-...+..++..-......++.+..++..
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777777777777777777777654
No 43
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=75.80 E-value=2.8 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Q 022319 276 WVCWVWAVGLIILLVCLISLLTSR 299 (299)
Q Consensus 276 ~~c~~i~~~iIv~lvi~~~i~~~~ 299 (299)
|+.++.++++++++++.++++.+|
T Consensus 6 ~Iy~~~Vi~l~vl~~~~Ftl~IRr 29 (58)
T PF13314_consen 6 LIYYILVIILIVLFGASFTLFIRR 29 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443444444555555666665543
No 44
>PHA02844 putative transmembrane protein; Provisional
Probab=75.73 E-value=3.7 Score=29.62 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Q 022319 275 SWVCWVWAVGLIILLVCLISLLTS 298 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~~~ 298 (299)
.|+.|+|+++.++++++++-.++|
T Consensus 47 ~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 47 STKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666555555555555544443
No 45
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=75.20 E-value=1.1e+02 Score=32.11 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 022319 224 KLHQVFLDMAVLVETQEEKMDDIEENVAN 252 (299)
Q Consensus 224 EL~~lF~dla~LV~eQGe~Id~Ie~nv~~ 252 (299)
+..-.-.++-..|.++|+.+|..-.++..
T Consensus 369 q~s~vv~~~~r~l~q~~~~l~~~a~~l~~ 397 (865)
T KOG4331|consen 369 QTSGVVDDVMRDLPQIPGDLDGLAEKLPS 397 (865)
T ss_pred cccccchHHHHHHHhCCchHHHHHhhccH
Confidence 33334445555668899999998888877
No 46
>PRK10404 hypothetical protein; Provisional
Probab=74.66 E-value=37 Score=26.15 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 022319 243 MDDIEENVANAGNFISG--------GTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLISLLTSR 299 (299)
Q Consensus 243 Id~Ie~nv~~a~~~ve~--------a~~eL~kA~~~qk~~k~~c~~i~~~iIv~lvi~~~i~~~~ 299 (299)
=++++..+..+...... +..-...+..|-+.+.|--++|..+ +-+++|+++.|
T Consensus 40 R~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avGiaag----vGlllG~Ll~R 100 (101)
T PRK10404 40 KARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAA----VGLVLGLLLAR 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH----HHHHHHHHHhc
Confidence 35666666666654443 3344444556666667776665433 33455555443
No 47
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.23 E-value=9.6 Score=32.96 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022319 215 VMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKK 273 (299)
Q Consensus 215 I~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~ 273 (299)
|.++-..+.|+..++.+==..|-+-||- ||--|+.|..-..++..--+.+++.+++
T Consensus 127 lskvkaqv~evk~vM~eNIekvldRGek---iELLVdKTenl~~~s~~fr~q~r~~~r~ 182 (217)
T KOG0859|consen 127 LAKVKAQVTEVKGVMMENIEKVLDRGEK---IELLVDKTENLRSKSFDFRTQGRKLRRK 182 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCe---EEeeechhhhhhhhhHHHHHHHHHHHHH
Confidence 3444556666766666655566666663 3444555555555555544455555544
No 48
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=73.58 E-value=4 Score=30.14 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022319 276 WVCWVWAVGLIILLVCLI 293 (299)
Q Consensus 276 ~~c~~i~~~iIv~lvi~~ 293 (299)
.+.|++.+||||+||+++
T Consensus 27 lMtILivLVIIiLlImlf 44 (85)
T PF10717_consen 27 LMTILIVLVIIILLIMLF 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 49
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.39 E-value=25 Score=24.94 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGT 261 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~ 261 (299)
.-|..||..+.-.-....+|+..|..|...||+.+..+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3477899999999999999999999999999999999988877776654
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=70.11 E-value=3.9 Score=30.22 Aligned_cols=28 Identities=11% Similarity=-0.027 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 022319 260 GTNSLYYANQTRKKRSWVCWVWAVGLII 287 (299)
Q Consensus 260 a~~eL~kA~~~qk~~k~~c~~i~~~iIv 287 (299)
...+...|+++.+++|+++++-+++.++
T Consensus 49 ~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~ 76 (82)
T PF04505_consen 49 AAGDYEGARRASRKAKKWSIIAIIIGIV 76 (82)
T ss_pred HCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456777888888887666554444333
No 51
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=68.54 E-value=40 Score=23.98 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHH
Q 022319 240 EEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVWAVGLII 287 (299)
Q Consensus 240 Ge~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~iIv 287 (299)
.+-++.+|.+.......+......|. .=+.+ ||++.+++.++|.
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~----~I~~n~kW~~r~iiGaiI~ 63 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLE----KIKSNTKWIWRTIIGAIIT 63 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444444444443 23344 7776665554443
No 52
>PHA02650 hypothetical protein; Provisional
Probab=68.23 E-value=5.8 Score=28.94 Aligned_cols=22 Identities=5% Similarity=0.149 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 022319 275 SWVCWVWAVGLIILLVCLISLL 296 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~ 296 (299)
.|+.++++++.++++++++-.+
T Consensus 48 ~~~~~ii~i~~v~i~~l~~flY 69 (81)
T PHA02650 48 NGQNFIFLIFSLIIVALFSFFV 69 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444444444444444443
No 53
>PHA03240 envelope glycoprotein M; Provisional
Probab=68.16 E-value=4.8 Score=35.15 Aligned_cols=15 Identities=20% Similarity=0.636 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHH
Q 022319 275 SWVCWVWAVGLIILL 289 (299)
Q Consensus 275 k~~c~~i~~~iIv~l 289 (299)
-|++++|++++||||
T Consensus 214 ~WIiilIIiIiIIIL 228 (258)
T PHA03240 214 AWIFIAIIIIIVIIL 228 (258)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666666655444444
No 54
>PHA03054 IMV membrane protein; Provisional
Probab=67.84 E-value=7 Score=27.89 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Q 022319 275 SWVCWVWAVGLIILLVCLISLLTS 298 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~~~ 298 (299)
.|+.++++++.++++++++-.++|
T Consensus 47 ~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 47 GWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555544443
No 55
>PHA02819 hypothetical protein; Provisional
Probab=67.75 E-value=6.8 Score=27.95 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Q 022319 275 SWVCWVWAVGLIILLVCLISLLTS 298 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~~~ 298 (299)
.|+.++++++.++++++++-.++|
T Consensus 45 ~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 45 LRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554444445454444443
No 56
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=67.01 E-value=2.1e+02 Score=31.70 Aligned_cols=64 Identities=11% Similarity=0.143 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 202 EKDIQRSKERHEA----VMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLY 265 (299)
Q Consensus 202 ~~~l~~i~~R~~e----I~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~ 265 (299)
++.|..|+++-.. +.+--+.+.+|-..+..|-.=..+++.---.|+.-+..|......|...+.
T Consensus 1597 ~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~ 1664 (1758)
T KOG0994|consen 1597 QQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE 1664 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555333 333344556666666666666777777777888877777766666655444
No 57
>PHA02975 hypothetical protein; Provisional
Probab=66.78 E-value=6 Score=28.08 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Q 022319 275 SWVCWVWAVGLIILLVCLISLLTS 298 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~~~ 298 (299)
.|+.++|+++.++++++++-.++|
T Consensus 43 ~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 43 LSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444445555444443
No 58
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.77 E-value=23 Score=31.03 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHH--HHHHHHHHHHHHHHHhh
Q 022319 249 NVANAGNFISGGTNSLYYANQTRKKR-SWVCW--VWAVGLIILLVCLISLL 296 (299)
Q Consensus 249 nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~--~i~~~iIv~lvi~~~i~ 296 (299)
.++.|.+-.-....+|.++.+.=+.- +++|- +++.+||+++|++++++
T Consensus 164 ~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~i 214 (220)
T KOG1666|consen 164 QLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLI 214 (220)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777776666 55542 44444555555555554
No 59
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=65.04 E-value=10 Score=37.47 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022319 242 KMDDIEENVANAGNFISGGTNSLYYANQTRKKR 274 (299)
Q Consensus 242 ~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~ 274 (299)
.+| |..++.++...+++|...|.++.++=.+.
T Consensus 433 PlD-IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v 464 (490)
T PF00523_consen 433 PLD-ISSELGQVNNSLNNAKDLLDKSNQILDSV 464 (490)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 55555666666666666666666555544
No 60
>PRK00736 hypothetical protein; Provisional
Probab=64.28 E-value=49 Score=23.46 Aligned_cols=45 Identities=2% Similarity=0.131 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 022319 215 VMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISG 259 (299)
Q Consensus 215 I~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~ 259 (299)
|..||..+.-.-....+|+..|..|...||.....+..-.+.+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999888777666544
No 61
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.00 E-value=34 Score=30.53 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=14.0
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 022319 235 LVETQEEKMDDIEENVANAG 254 (299)
Q Consensus 235 LV~eQGe~Id~Ie~nv~~a~ 254 (299)
|+.+|++.+|.|+..|....
T Consensus 146 m~~eQDe~Ld~ls~ti~rlk 165 (235)
T KOG3202|consen 146 MLQEQDEGLDGLSATVQRLK 165 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788888888877765443
No 62
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=63.93 E-value=19 Score=24.91 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 022319 275 SWVCWVWAVGLIILLVCLISL 295 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i 295 (299)
++.-+++++++++++++.+-+
T Consensus 36 ~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 36 RKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667788777777666665543
No 63
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.18 E-value=1.1e+02 Score=26.96 Aligned_cols=52 Identities=4% Similarity=0.091 Sum_probs=31.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 022319 236 VETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLII 287 (299)
Q Consensus 236 V~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~k~~c~~i~~~iIv 287 (299)
+.+|+-.+-.+-.-+-....-+.=.+.-+.--.+.-+.-||++|+-+++++|
T Consensus 152 l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v 203 (213)
T KOG3251|consen 152 LVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLV 203 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3467777777776666666666666666654444444447776665544444
No 64
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=61.92 E-value=77 Score=24.98 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=15.4
Q ss_pred CchhhhhhhhhHHhhHhhh
Q 022319 2 NDLMTKSFLSYVELKKQAQ 20 (299)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (299)
.|.+.++|+-|.|+.+-.+
T Consensus 3 ~~~~rki~LAGLGa~a~~~ 21 (118)
T TIGR01837 3 GESARKVWLAGIGALARVQ 21 (118)
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 4778999999998877655
No 65
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=61.42 E-value=66 Score=24.00 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhhhHHHHHHHHHHHHH
Q 022319 218 IQRSLTKLHQVFLDMAVLVETQE-EKMDDIEENVANAGNFISGGTNSLYY--------ANQTRKKRSWVCWVWAVGLIIL 288 (299)
Q Consensus 218 LE~sI~EL~~lF~dla~LV~eQG-e~Id~Ie~nv~~a~~~ve~a~~eL~k--------A~~~qk~~k~~c~~i~~~iIv~ 288 (299)
|+.-+.++..|...++....... +.-++++..++++.+....+...+.. +..|-+.+.|.-++|.++
T Consensus 7 l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAag---- 82 (94)
T PF05957_consen 7 LEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSVGIAAG---- 82 (94)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH----
Confidence 34444445555555544444333 33356666666666666554443322 233333335655554433
Q ss_pred HHHHHHhhccC
Q 022319 289 LVCLISLLTSR 299 (299)
Q Consensus 289 lvi~~~i~~~~ 299 (299)
+-+++|.++.|
T Consensus 83 vG~llG~Ll~R 93 (94)
T PF05957_consen 83 VGFLLGLLLRR 93 (94)
T ss_pred HHHHHHHHHhC
Confidence 34455655544
No 66
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=61.28 E-value=11 Score=27.65 Aligned_cols=9 Identities=11% Similarity=0.552 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 022319 287 ILLVCLISL 295 (299)
Q Consensus 287 v~lvi~~~i 295 (299)
+++++++|.
T Consensus 45 lvVvvivg~ 53 (93)
T PF08999_consen 45 LVVVVIVGA 53 (93)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333444444
No 67
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=60.52 E-value=12 Score=26.86 Aligned_cols=22 Identities=18% Similarity=0.534 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 022319 276 WVCWVWAVGLIILLVCLISLLT 297 (299)
Q Consensus 276 ~~c~~i~~~iIv~lvi~~~i~~ 297 (299)
|+.++|.+++++++++++-.++
T Consensus 48 ~~~~ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 48 WIILIISIIFVLIIVLLTFLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334443333333333333333
No 68
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=60.29 E-value=1.4e+02 Score=27.78 Aligned_cols=89 Identities=20% Similarity=0.407 Sum_probs=53.6
Q ss_pred hhhhhhhHHhhHh-hhhhhhhcccccccCCCCCCcchHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhc--
Q 022319 6 TKSFLSYVELKKQ-AQKDLEADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEE--------ITNLLLDLQNLNEGTK-- 74 (299)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~--------i~~~i~~L~~l~~~~~-- 74 (299)
.+.|..|+++|+- -+ ..++++..+|.+. .-..|+. .....|.+ -...+.+|+.++.++.
T Consensus 16 ~~~yinYk~LKK~lK~------~~~~~~~~~~~~~-~e~dFv~---~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~~ 85 (310)
T KOG1161|consen 16 KDKYINYKELKKLLKQ------YSIQTADSSPDSR-DESDFVR---LLDAELEKVNGFQLEKESELIIRLKELEEKIDAL 85 (310)
T ss_pred hhhhcCHHHHHHHHHH------hccccccCCcccc-hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5789999999874 22 2355555555432 3445654 33444443 3455677777777753
Q ss_pred --cCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022319 75 --STHSGKVLRGLRDRMESDVASILRKAKIVK 104 (299)
Q Consensus 75 --~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik 104 (299)
..++..+...+++++.+...+...+.+-+.
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~ 117 (310)
T KOG1161|consen 86 SLEPPSAEEMKELREELVDFHGEMVLLENFSR 117 (310)
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334456788888888877776665543
No 69
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=59.91 E-value=14 Score=27.20 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q 022319 242 KMDDIEENVANA 253 (299)
Q Consensus 242 ~Id~Ie~nv~~a 253 (299)
.++.||.+....
T Consensus 10 ~L~eiEr~L~~~ 21 (82)
T PF11239_consen 10 RLEEIERQLRAD 21 (82)
T ss_pred HHHHHHHHHHhc
Confidence 778888877543
No 70
>PRK10132 hypothetical protein; Provisional
Probab=59.85 E-value=81 Score=24.57 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhHHHHHHHHH
Q 022319 242 KMDDIEENVANAGNFIS-------GGTNSLYYANQTRKKRSWVCWVWAVG 284 (299)
Q Consensus 242 ~Id~Ie~nv~~a~~~ve-------~a~~eL~kA~~~qk~~k~~c~~i~~~ 284 (299)
+=++++.....+.+... .+..-...+..|-+.+.|.-++|..+
T Consensus 46 lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~svgiaag 95 (108)
T PRK10132 46 ARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWCSVGTAAA 95 (108)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 33466666666654333 23333334445555557777765544
No 71
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=59.26 E-value=1.7e+02 Score=28.08 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 022319 204 DIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257 (299)
Q Consensus 204 ~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~v 257 (299)
+|++=.-|+.-+.+.-....|||+ .+++.|=.++--|=.++.|.-..=..++
T Consensus 300 tLQEERyR~erLEEqLNdlteLqQ--nEi~nLKqElasmeervaYQsyERaRdI 351 (455)
T KOG3850|consen 300 TLQEERYRYERLEEQLNDLTELQQ--NEIANLKQELASMEERVAYQSYERARDI 351 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433344444444444444443 4666666666666666655543333333
No 72
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=59.07 E-value=1.3e+02 Score=26.67 Aligned_cols=43 Identities=7% Similarity=0.020 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHH
Q 022319 246 IEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVWAVGLIIL 288 (299)
Q Consensus 246 Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~iIv~ 288 (299)
+-.++..+.+..+...+++++|.+.-+++ +|+|.++..++.|+
T Consensus 118 ~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf 161 (230)
T PF03904_consen 118 AQNEIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVF 161 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34456666677777888888887777777 99988877655444
No 73
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=58.98 E-value=34 Score=23.62 Aligned_cols=10 Identities=20% Similarity=0.126 Sum_probs=4.9
Q ss_pred HHHHHHhhcc
Q 022319 289 LVCLISLLTS 298 (299)
Q Consensus 289 lvi~~~i~~~ 298 (299)
+..++|.+++
T Consensus 48 ~S~~lG~~~~ 57 (60)
T PF06072_consen 48 LSGGLGALVA 57 (60)
T ss_pred HHHHHHHHhh
Confidence 4445555543
No 74
>PHA02675 ORF104 fusion protein; Provisional
Probab=58.55 E-value=63 Score=23.92 Aligned_cols=42 Identities=10% Similarity=0.241 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 022319 217 DIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFIS 258 (299)
Q Consensus 217 ~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve 258 (299)
.||..+..|-+.|..+..=...=++.|+|.|.+.+.-...+=
T Consensus 34 sle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml 75 (90)
T PHA02675 34 SVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALL 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666688888888888899999999999987665543
No 75
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=57.70 E-value=22 Score=23.03 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 022319 279 WVWAVGLIILL 289 (299)
Q Consensus 279 ~~i~~~iIv~l 289 (299)
++||+++|.++
T Consensus 38 ilicllli~ii 48 (52)
T TIGR01294 38 ILICLLLICII 48 (52)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 76
>PRK02793 phi X174 lysis protein; Provisional
Probab=57.34 E-value=69 Score=22.95 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISG 259 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~ 259 (299)
.-|..||..+.-.-++..+|+..|.+|...||+....+..-...+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35778899999999999999999999999999999888777665554
No 77
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=56.60 E-value=69 Score=22.72 Aligned_cols=13 Identities=38% Similarity=0.624 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHH
Q 022319 241 EKMDDIEENVANA 253 (299)
Q Consensus 241 e~Id~Ie~nv~~a 253 (299)
+-+.+||..+++-
T Consensus 6 e~l~~ie~~l~~~ 18 (71)
T PF10779_consen 6 EKLNRIETKLDNH 18 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 3455666655543
No 78
>PHA03046 Hypothetical protein; Provisional
Probab=55.74 E-value=1.1e+02 Score=24.72 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=50.3
Q ss_pred CCHHHHHHHhhCCCccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 022319 179 PSEDVIEKVISGSGKVEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257 (299)
Q Consensus 179 ~tdeeie~~le~~~~~~~~q~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~v 257 (299)
..++++...+.+. |. ..-.-+|..+.-.+.-|-.+|+....-...-|+.|+|+|.+++....++
T Consensus 65 i~eddisdILkDs----FI-----------~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 65 IHEDDISDILKDS----FI-----------HKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred ccHHHHHHHHhhh----cc-----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888887653 33 2344567888888889999999999999999999999999998766554
No 79
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=55.41 E-value=9.7 Score=37.69 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 022319 242 KMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWA 282 (299)
Q Consensus 242 ~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~k~~c~~i~ 282 (299)
-|++|...+++|.++++++++-|.+..... .+-|..|+++
T Consensus 439 eL~~vn~sL~~A~~~L~~Sn~iL~~v~~~~-~~~~~iI~li 478 (490)
T PF00523_consen 439 ELGQVNNSLNNAKDLLDKSNQILDSVNPGI-SSNSIIIILI 478 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHH
Confidence 456777788899999999999998655422 2244444333
No 80
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=55.36 E-value=13 Score=30.60 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 022319 275 SWVCWVWAVGLIILLVCLISLL 296 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~ 296 (299)
.|+.+++|+++|+++++++.++
T Consensus 118 ~~~i~~~i~g~ll~i~~giy~~ 139 (145)
T PF10661_consen 118 SPTILLSIGGILLAICGGIYVV 139 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 81
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=55.09 E-value=1.4e+02 Score=25.90 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 46 FQEVDAIKGEMEEITNLLLDLQNLNEGTKSTH---SGKVLRGLRDRMESDVASILRKAKIVKARLESLDK 112 (299)
Q Consensus 46 ~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~---~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~ 112 (299)
|..+......+......+..|...-..+-... +..+...+....+..+..+..+...+..--+.|..
T Consensus 24 le~a~~~Ek~~~~~~k~L~~lE~~~q~lY~~ii~~~~~d~~~v~~~~~~a~~nv~~R~k~l~~Ek~ai~~ 93 (204)
T PF10368_consen 24 LEKAVKQEKPFKEQQKKLNELEKKEQELYEQIIQLGKDDNDEVKKLSDEALKNVDEREKELKKEKEAIEK 93 (204)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGG---G-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555554444322111 22344555666666666666655555443333433
No 82
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=55.03 E-value=43 Score=24.61 Aligned_cols=34 Identities=12% Similarity=0.235 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022319 39 EENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEG 72 (299)
Q Consensus 39 ~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~ 72 (299)
......|+.++.+|...|..+...+.+++.-+-.
T Consensus 35 ~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL~ 68 (87)
T PF10496_consen 35 TKPKDEFLKEAYRILSHITSLRKFLKSIRKAYLS 68 (87)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455689999999999999999999999988743
No 83
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=54.97 E-value=2.1e+02 Score=27.89 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCccchhhhhchHHHHHHHHHH
Q 022319 133 TRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEILEGKTEKDIQRSKERH 212 (299)
Q Consensus 133 ir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~~~~~q~~~~~~l~~i~~R~ 212 (299)
....++..+...+..+-.+....+. |....+..-+ .+. +.|++.+++. ++|+. .-.
T Consensus 243 p~~~qle~v~kdi~~a~~~L~~m~~-~i~~~kp~Wk----KiW-----E~EL~~V~eE---QqfL~-----------~Qe 298 (424)
T PF03915_consen 243 PSPKQLETVAKDISRASKELKKMKE-YIKTEKPIWK----KIW-----ESELQKVCEE---QQFLK-----------LQE 298 (424)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HHH-----HHHHHHHHHH---HHHHH-----------HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCHHHH----HHH-----HHHHHHHHHH---HHHHH-----------HHH
Confidence 3456667777777777777776654 3333333222 122 5567776654 34442 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDI 246 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~I 246 (299)
.-+..|...+.-+.+.|.-+...+.+|+..--+.
T Consensus 299 dL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~ 332 (424)
T PF03915_consen 299 DLLSDLKEDLKKASETFALVEQCTEEQEKSPSRS 332 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 3466777777788888888888888887654444
No 84
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=54.74 E-value=29 Score=22.66 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 022319 216 MDIQRSLTKLHQVFLDMAVLVETQEEK 242 (299)
Q Consensus 216 ~~LE~sI~EL~~lF~dla~LV~eQGe~ 242 (299)
..|-+.+.+|++++.+|-.++.+|=.=
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~kE 30 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIKE 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357789999999999999999887443
No 85
>PHA03240 envelope glycoprotein M; Provisional
Probab=54.31 E-value=12 Score=32.82 Aligned_cols=27 Identities=15% Similarity=0.613 Sum_probs=18.1
Q ss_pred HHhhhh--hHHHHHHHHHHHHHHHHHHHh
Q 022319 269 QTRKKR--SWVCWVWAVGLIILLVCLISL 295 (299)
Q Consensus 269 ~~qk~~--k~~c~~i~~~iIv~lvi~~~i 295 (299)
++|+.. --..|+|+++|||++||++-.
T Consensus 203 eaqr~~~aaH~~WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 203 EAHRSKDAAHIAWIFIAIIIIIVIILFFF 231 (258)
T ss_pred eeecccccchHhHHHHHHHHHHHHHHHHH
Confidence 344443 678888888887777766543
No 86
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=53.71 E-value=13 Score=35.50 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhccC
Q 022319 280 VWAVGLIILLVCLISLLTSR 299 (299)
Q Consensus 280 ~i~~~iIv~lvi~~~i~~~~ 299 (299)
+|++-++++++.++|+++||
T Consensus 351 ii~~N~v~lllg~~~~~~~r 370 (374)
T TIGR03503 351 IIVGNVVILLLGGIGFFVWR 370 (374)
T ss_pred hHhhhhhhhhhheeeEEEEE
Confidence 33333444455556666554
No 87
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=53.44 E-value=12 Score=32.59 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHH
Q 022319 275 SWVCWVWAVGLIIL 288 (299)
Q Consensus 275 k~~c~~i~~~iIv~ 288 (299)
..+|++||.|+++|
T Consensus 130 mLIClIIIAVLfLI 143 (227)
T PF05399_consen 130 MLICLIIIAVLFLI 143 (227)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555544443
No 88
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=53.34 E-value=87 Score=22.89 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022319 42 LTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVK 104 (299)
Q Consensus 42 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik 104 (299)
-...-..+..+...+..+.-.-..|....+.+-...+......+..+|+.++..+-..+.+|.
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888888888888888877777766555555556666677777666655555554
No 89
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=53.28 E-value=52 Score=27.74 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhh-h-HHHHHHHHHHHHHH
Q 022319 261 TNSLYYANQTRKKR-S-WVCWVWAVGLIILL 289 (299)
Q Consensus 261 ~~eL~kA~~~qk~~-k-~~c~~i~~~iIv~l 289 (299)
..++.+|+..++++ | |-|+++++.+.+++
T Consensus 138 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvI 168 (171)
T PRK08307 138 EREEEEAEEEQKKNEKMYKYLGFLAGLLIVI 168 (171)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 56667777887777 4 44777766655443
No 90
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=53.22 E-value=28 Score=22.59 Aligned_cols=7 Identities=29% Similarity=0.145 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 022319 281 WAVGLII 287 (299)
Q Consensus 281 i~~~iIv 287 (299)
||+++|.
T Consensus 40 icllli~ 46 (52)
T PF04272_consen 40 ICLLLIC 46 (52)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 91
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=51.77 E-value=2.3e+02 Score=27.36 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=26.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 39 EENLTQFFQEVDAIKGEMEEITNLLLDLQNLN 70 (299)
Q Consensus 39 ~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~ 70 (299)
...+..++.++.+|+.....+...++.|+...
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~ 242 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQY 242 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577899999999999999999999888743
No 92
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=51.66 E-value=57 Score=27.45 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhh-h-HHHHHHHHHHHHHH
Q 022319 261 TNSLYYANQTRKKR-S-WVCWVWAVGLIILL 289 (299)
Q Consensus 261 ~~eL~kA~~~qk~~-k-~~c~~i~~~iIv~l 289 (299)
..++..|+.-++++ | |-++++++.+.+++
T Consensus 137 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvI 167 (170)
T TIGR02833 137 ERQLTEAEDEQKKNEKMYRYLGVLVGLMIVL 167 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 55666777777777 4 34677666655443
No 93
>PHA02692 hypothetical protein; Provisional
Probab=51.49 E-value=19 Score=25.74 Aligned_cols=24 Identities=13% Similarity=0.029 Sum_probs=10.6
Q ss_pred hHHHHHHH-HHHHHHHHHHHHhhcc
Q 022319 275 SWVCWVWA-VGLIILLVCLISLLTS 298 (299)
Q Consensus 275 k~~c~~i~-~~iIv~lvi~~~i~~~ 298 (299)
.|+.++++ ++.++++++++-.++|
T Consensus 44 ~~~~~ii~~~~~~~~~vll~flYLK 68 (70)
T PHA02692 44 PWTTVFLIGLIAAAIGVLLCFHYLK 68 (70)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45444444 3334444444444443
No 94
>PRK04406 hypothetical protein; Provisional
Probab=51.44 E-value=91 Score=22.57 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISG 259 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~ 259 (299)
.-|..||..+.-.-.+..+|+..|..|...||.....+..-...+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34778899999999999999999999999999998888777665543
No 95
>smart00150 SPEC Spectrin repeats.
Probab=50.96 E-value=90 Score=22.35 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 022319 39 EENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKST 76 (299)
Q Consensus 39 ~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~ 76 (299)
.+.+...+.+.+.+...|......+..+..+-..+...
T Consensus 30 ~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~ 67 (101)
T smart00150 30 LESVEALLKKHEALEAELEAHEERVEALNELGEQLIEE 67 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 45677888888899999998888888888887765443
No 96
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=50.58 E-value=57 Score=22.53 Aligned_cols=31 Identities=10% Similarity=0.165 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022319 262 NSLYYANQTRKKRSWVCWVWAVGLIILLVCLIS 294 (299)
Q Consensus 262 ~eL~kA~~~qk~~k~~c~~i~~~iIv~lvi~~~ 294 (299)
+=|.+-++.+|..+.+.++++++ +++.++++
T Consensus 31 eil~ker~R~r~~~~~~~li~aL--i~v~vvL~ 61 (64)
T COG4068 31 EILNKERKRQRNFMILMFLILAL--ILVMVVLP 61 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhc
Confidence 33444444444444434443333 33334444
No 97
>PRK02119 hypothetical protein; Provisional
Probab=49.90 E-value=95 Score=22.32 Aligned_cols=47 Identities=6% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISG 259 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~ 259 (299)
.-|.+||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999888777666544
No 98
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.88 E-value=4e+02 Score=29.53 Aligned_cols=53 Identities=13% Similarity=0.215 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 022319 205 IQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257 (299)
Q Consensus 205 l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~v 257 (299)
...+.+-.+++...+..+..|++.+.++-.-..++..-+..-+.++..+....
T Consensus 941 q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~ 993 (1293)
T KOG0996|consen 941 QKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKEL 993 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566778888888888888888887777765554444444444433333
No 99
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=49.58 E-value=1e+02 Score=22.48 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHH
Q 022319 51 AIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAK 101 (299)
Q Consensus 51 ~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~ 101 (299)
.|+.+|..+..++..|+.......... .+..++..+|+.+...+..+.+
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~--~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNL--PDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHH
Confidence 577778888888877777776543322 2345677777777766655444
No 100
>COG4640 Predicted membrane protein [Function unknown]
Probab=48.83 E-value=17 Score=34.70 Aligned_cols=24 Identities=29% Similarity=0.237 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhhh--hHHHHHHH
Q 022319 259 GGTNSLYYANQTRKKR--SWVCWVWA 282 (299)
Q Consensus 259 ~a~~eL~kA~~~qk~~--k~~c~~i~ 282 (299)
.|++.+..-...+|++ |++++.+.
T Consensus 31 qan~~tn~i~~trrkniskK~ii~wa 56 (465)
T COG4640 31 QANKSTNEIIQTRRKNISKKKIIPWA 56 (465)
T ss_pred hhhHHHHHHHHhhccCCccceeehhH
Confidence 4455555544555666 44443333
No 101
>PHA03049 IMV membrane protein; Provisional
Probab=48.61 E-value=24 Score=24.94 Aligned_cols=7 Identities=0% Similarity=0.178 Sum_probs=3.8
Q ss_pred HHHHhhc
Q 022319 291 CLISLLT 297 (299)
Q Consensus 291 i~~~i~~ 297 (299)
|+-||+-
T Consensus 18 IvYgiYn 24 (68)
T PHA03049 18 IVYGIYN 24 (68)
T ss_pred HHHHHHh
Confidence 5556653
No 102
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=48.22 E-value=72 Score=26.72 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhh-h-HHHHHHHHHHHHH
Q 022319 261 TNSLYYANQTRKKR-S-WVCWVWAVGLIIL 288 (299)
Q Consensus 261 ~~eL~kA~~~qk~~-k-~~c~~i~~~iIv~ 288 (299)
..++..|+.-++++ | |-++++++.+.++
T Consensus 137 ~~~~~~a~~~~~~~~Klyr~LGvl~G~~lv 166 (170)
T PF09548_consen 137 EQQLEEAREEAKKKGKLYRSLGVLGGLFLV 166 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45556666666666 3 3466665554443
No 103
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=47.13 E-value=68 Score=23.57 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccCCChHHHH
Q 022319 54 GEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVDRT 133 (299)
Q Consensus 54 ~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~~~~s~~~ri 133 (299)
..+..|...+..|.....++...+...-.... .. .....++..+...|+..+..+...+..++. ..........
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~-~d-~~~~~el~~l~~~i~~~~~~~~~~lk~l~~----~~~~~~~~~~ 80 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSSPD-QD-SELKRELDELTDEIKQLFQKIKKRLKQLSK----DNEDSEGEEP 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhcccCC
Confidence 44566666677666666654433321111111 11 345666666667777777777666543211 1000000122
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022319 134 RISVTNGLRVKLRDLMNDFQS 154 (299)
Q Consensus 134 r~~q~~~L~~~f~~~~~~f~~ 154 (299)
..+........+..+..+|+.
T Consensus 81 ~~~~~ri~~nq~~~L~~kf~~ 101 (103)
T PF00804_consen 81 SSNEVRIRKNQVQALSKKFQE 101 (103)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666654
No 104
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=46.71 E-value=22 Score=26.43 Aligned_cols=7 Identities=14% Similarity=-0.064 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 022319 262 NSLYYAN 268 (299)
Q Consensus 262 ~eL~kA~ 268 (299)
.+|.+=.
T Consensus 20 DQL~qlV 26 (84)
T PF06143_consen 20 DQLEQLV 26 (84)
T ss_pred HHHHHHH
Confidence 3444444
No 105
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=45.98 E-value=85 Score=28.79 Aligned_cols=39 Identities=10% Similarity=0.034 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHH
Q 022319 251 ANAGNFISGGTNSLYYANQTRKKR---SWVCWVWAVGLIILL 289 (299)
Q Consensus 251 ~~a~~~ve~a~~eL~kA~~~qk~~---k~~c~~i~~~iIv~l 289 (299)
.+..++-++-.+..++|.+-+|.. |-+-|++.++-+|..
T Consensus 33 ~~~~e~~~~~~e~~~kaeeaqK~Gi~~kIf~wi~~avsvv~~ 74 (306)
T PF04888_consen 33 KKAEEKAEEIEEAQEKAEEAQKAGIFSKIFGWIGTAVSVVAG 74 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554 556666665544443
No 106
>PRK00846 hypothetical protein; Provisional
Probab=45.60 E-value=1.2e+02 Score=22.20 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGT 261 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~ 261 (299)
.-|..||..+.-.-.+..+|+..|..|...|++....+..-.+.+....
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4477888999999999999999999999999999988877777665543
No 107
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=44.86 E-value=2.1e+02 Score=24.97 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=9.1
Q ss_pred HHHHHhhhh-hHHHHHHHHH
Q 022319 266 YANQTRKKR-SWVCWVWAVG 284 (299)
Q Consensus 266 kA~~~qk~~-k~~c~~i~~~ 284 (299)
.+.+.+.++ .|..|.++++
T Consensus 172 ~~~~~q~~a~~~~~~~li~~ 191 (207)
T COG5278 172 QALAEQQNAARTLRIALIIG 191 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 344555555 6644444433
No 108
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=44.20 E-value=1.7e+02 Score=23.64 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHH
Q 022319 52 IKGEMEEITNLLL-DLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKA 100 (299)
Q Consensus 52 I~~~I~~i~~~i~-~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~ 100 (299)
+....++++..++ ++....++ +..|+..+...|+.+|+.|...+.++.
T Consensus 81 ~~~~~dklE~~fd~rV~~aL~r-LgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 81 ATGQWDKLEQAFDERVARALNR-LGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666665 36666665 567777777777777777776665543
No 109
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=43.92 E-value=57 Score=21.57 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhh
Q 022319 284 GLIILLVCLISLL 296 (299)
Q Consensus 284 ~iIv~lvi~~~i~ 296 (299)
+++++++++.|++
T Consensus 26 ~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 26 LILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHHHHHHc
Confidence 3344445555554
No 110
>TIGR02791 VirB5 P-type DNA transfer protein VirB5. The VirB5 protein is involved in the type IV DNA secretion systems typified by the Agrobacterium Ti plasmid vir system where it interacts with several other proteins essential for proper pilus formation. VirB5 is homologous to the IncN (N-type) conjugation system protein TraC as well as the P-type protein TrbJ and the F-type protein TraE.
Probab=43.70 E-value=1.9e+02 Score=25.32 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHH
Q 022319 54 GEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVA 94 (299)
Q Consensus 54 ~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~ 94 (299)
..-..+...++.|..|..++....++.+..++..+|..-..
T Consensus 151 ~~y~~~~~rl~~i~~L~~~I~~a~d~K~~~DLq~rI~~Eqa 191 (220)
T TIGR02791 151 RAYDAATKRLSNIEQLRQKINEAGDPKAIADLQARIQVEQA 191 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 34556777888889999988888887766666665554443
No 111
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=43.36 E-value=21 Score=27.39 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 022319 278 CWVWAVGLIILLVCLISL 295 (299)
Q Consensus 278 c~~i~~~iIv~lvi~~~i 295 (299)
+|++++.+++++||+..|
T Consensus 64 ili~lls~v~IlVily~I 81 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAI 81 (101)
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 333333344444444333
No 112
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=43.22 E-value=25 Score=30.76 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh
Q 022319 273 KRSWVCWVWAVGLIILLVCLISLL 296 (299)
Q Consensus 273 ~~k~~c~~i~~~iIv~lvi~~~i~ 296 (299)
.+-++-++||++||.+||++-.++
T Consensus 124 n~~K~amLIClIIIAVLfLICT~L 147 (227)
T PF05399_consen 124 NNNKMAMLICLIIIAVLFLICTLL 147 (227)
T ss_pred CccchhHHHHHHHHHHHHHHHHHH
Confidence 334666777777777776665544
No 113
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=43.07 E-value=2.4e+02 Score=25.03 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 208 SKERHEAVM-DIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYAN 268 (299)
Q Consensus 208 i~~R~~eI~-~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~ 268 (299)
.-++++-++ +|..++.-|..-|..++.-- | ..|+.=-.-+..+..-+.....-|..+.
T Consensus 145 ~l~~q~~lQeeLaesll~LArslKtnalAf--q-salkeDnQvl~~~~k~~D~N~~~L~~~S 203 (244)
T KOG2678|consen 145 QLEDQDTLQEELAESLLKLARSLKTNALAF--Q-SALKEDNQVLGAAEKGIDVNSQGLMDVS 203 (244)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhHHHH--H-HHHHhhHHHHHHHHHHHhHHHHHHHhhh
Confidence 334444443 67778888888787766443 3 3333222224444455555555555543
No 114
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=42.02 E-value=34 Score=25.20 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=9.5
Q ss_pred hhhh-hHHHHHHHHHHHHHH
Q 022319 271 RKKR-SWVCWVWAVGLIILL 289 (299)
Q Consensus 271 qk~~-k~~c~~i~~~iIv~l 289 (299)
+++. |++++.++++.|+++
T Consensus 8 k~~~~kkFl~~l~~vfiia~ 27 (85)
T PF10749_consen 8 KTKEGKKFLLALAIVFIIAA 27 (85)
T ss_pred cChhhhHHHHHHHHHHHHHH
Confidence 3444 666555555444443
No 115
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=41.77 E-value=98 Score=20.18 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022319 217 DIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKK 273 (299)
Q Consensus 217 ~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~ 273 (299)
.-.+.+..|.....++..|..+=|.+|..=..-+.....+++.+...+..|.+.-++
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345778888888899999998888888888888888999999998888888765443
No 116
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.67 E-value=39 Score=30.88 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=30.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 231 DMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY 266 (299)
Q Consensus 231 dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~k 266 (299)
--..+..+||+.|++||.|+..-......|.+.|..
T Consensus 97 ~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~ 132 (273)
T KOG3065|consen 97 RTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTE 132 (273)
T ss_pred HHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHH
Confidence 344567789999999999999999988888888764
No 117
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=41.34 E-value=2.7e+02 Score=26.48 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhhhh---hHHHHH
Q 022319 245 DIEENVANAGNFISGGTNSLYYA----NQTRKKR---SWVCWV 280 (299)
Q Consensus 245 ~Ie~nv~~a~~~ve~a~~eL~kA----~~~qk~~---k~~c~~ 280 (299)
.||.-.++-..+++.+...++++ .+-+++. |.+-|+
T Consensus 137 ~ne~~m~qn~kkme~nqqkikk~eeeak~~~ksg~askIfgw~ 179 (400)
T COG5613 137 SNEIYMDQNTKKMENNQQKIKKQEEEAKKAEKSGQASKIFGWV 179 (400)
T ss_pred ccHHHHHhhHHHHHhhHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 34443444444444444444443 3334443 555555
No 118
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=41.03 E-value=58 Score=24.37 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022319 204 DIQRSKERHEAVMDIQRSLT 223 (299)
Q Consensus 204 ~l~~i~~R~~eI~~LE~sI~ 223 (299)
.+..+..+-+.=..++..+.
T Consensus 34 ~~~~~~~~l~~G~~~~~al~ 53 (124)
T PF00482_consen 34 ELQKIRRRLRNGGSLEEALE 53 (124)
T ss_dssp HHHHHHHHHHTT--HHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 33344444333334455544
No 119
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=40.94 E-value=35 Score=24.16 Aligned_cols=6 Identities=17% Similarity=0.301 Sum_probs=3.0
Q ss_pred HHHHhh
Q 022319 291 CLISLL 296 (299)
Q Consensus 291 i~~~i~ 296 (299)
|+-||+
T Consensus 18 IlY~iY 23 (68)
T PF05961_consen 18 ILYGIY 23 (68)
T ss_pred HHHHHH
Confidence 445554
No 120
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=40.92 E-value=1.8e+02 Score=28.99 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=54.0
Q ss_pred hhhhHHhhHhhhhhhhhcccccc------cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cc
Q 022319 9 FLSYVELKKQAQKDLEADLDIER------GQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGT-------KS 75 (299)
Q Consensus 9 ~~~~~~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~-------~~ 75 (299)
.+|+.-.+.-+..++|-|++... .+.. |.++...+.....|+..+.++..|..+.... +.
T Consensus 373 Ivg~~~~a~~~v~a~~iGs~i~~~~t~~~vG~d-------pe~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~i~~~~ 445 (543)
T COG1315 373 IVGGNTEAFEDVYAREIGSDIGSLKTAIDVGMD-------PEIVERLKELTEEISLHEERLKKLTKLLVALVKVKIESKK 445 (543)
T ss_pred ccccchhhhHhhhHhhcCCcccccceeeEeccC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444446667777776661 2233 3455555555555555555554444433221 11
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022319 76 THSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNM 115 (299)
Q Consensus 76 ~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~ 115 (299)
..-+.+...+...++...-+......+++..|..++....
T Consensus 446 ~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lqe~le 485 (543)
T COG1315 446 NILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQEELE 485 (543)
T ss_pred CCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHh
Confidence 1112233355566666666667777888888888887644
No 121
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=40.00 E-value=2.7e+02 Score=27.33 Aligned_cols=9 Identities=0% Similarity=-0.009 Sum_probs=3.9
Q ss_pred hHHHHHHHH
Q 022319 275 SWVCWVWAV 283 (299)
Q Consensus 275 k~~c~~i~~ 283 (299)
.|+++++++
T Consensus 151 ~~~~~~~~~ 159 (565)
T PRK10935 151 AAISLLGLI 159 (565)
T ss_pred HHHHHHHHH
Confidence 444444333
No 122
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=39.28 E-value=1.1e+02 Score=22.17 Aligned_cols=49 Identities=20% Similarity=0.382 Sum_probs=29.1
Q ss_pred hhhhhHHhhHhhhhhhhhcccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022319 8 SFLSYVELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTK 74 (299)
Q Consensus 8 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~ 74 (299)
||..|.--|.|++ |.|.+- -..||. .|...+.++...++.|.++.+..+
T Consensus 29 Sl~DyImiKRGS~-------DmPe~l--------~~~~~~---QideeV~~LKe~IdaLNK~KkE~l 77 (79)
T PF10398_consen 29 SLVDYIMIKRGSQ-------DMPEHL--------NMAFLA---QIDEEVEKLKEHIDALNKIKKELL 77 (79)
T ss_dssp -HHHHHHHHTTSS----------TTS---------HHHHH---HHHHHHHHHHHHHHHHHHHHGGG-
T ss_pred cHHHHHHhcccCC-------cCcccc--------cHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666666666 444331 124555 567788888888888888877643
No 123
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.04 E-value=67 Score=21.91 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022319 42 LTQFFQEVDAIKGEMEEITNLLLDLQNLNEG 72 (299)
Q Consensus 42 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~ 72 (299)
+...-.+.++|+..+..++.++.+|=.++.-
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666655555543
No 124
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=38.64 E-value=23 Score=33.76 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 022319 278 CWVWAVGLIILLVCLISLL 296 (299)
Q Consensus 278 c~~i~~~iIv~lvi~~~i~ 296 (299)
|+++++++++++..++|.+
T Consensus 305 c~~~~i~~lL~ig~~~gFv 323 (387)
T PF12751_consen 305 CIYLSILLLLVIGFAIGFV 323 (387)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4333333333333344443
No 125
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.92 E-value=3.4e+02 Score=26.44 Aligned_cols=62 Identities=6% Similarity=0.157 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 207 RSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYAN 268 (299)
Q Consensus 207 ~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~ 268 (299)
.+.+-..+|..+++.|.+-.+-+..|...+.++.+-|++|+..+-.+.....+-...+....
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 34455778999999999999999999999999999999999999888888877776665543
No 126
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=37.40 E-value=1.7e+02 Score=27.78 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 022319 218 IQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISG 259 (299)
Q Consensus 218 LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~ 259 (299)
+...+.+- .+|-++..-...-||.-.+++.-...+.++.++
T Consensus 316 ls~al~~~-~~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~~ 356 (399)
T TIGR02120 316 LSRALRAT-GLFPPLLVHMIASGEKSGQLETMLERAADNQER 356 (399)
T ss_pred HHHHHhcC-CCCCHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 44445442 266667666777888888888888777777654
No 127
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=36.74 E-value=4.7e+02 Score=26.53 Aligned_cols=90 Identities=10% Similarity=0.141 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccCCCh
Q 022319 50 DAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSS 129 (299)
Q Consensus 50 ~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~~~~s~ 129 (299)
++|..-+.+|..-|+.....++++.+..++..-..++..|. .+|+++ ++.+.+||.-....
T Consensus 8 ~eIdr~lkKv~Egve~Fd~i~ek~~~~~n~sqkeK~e~DLK---kEIKKL-QRlRdQIKtW~ss~--------------- 68 (575)
T KOG2150|consen 8 QEIDRCLKKVDEGVEIFDEIYEKLHSANNVSQKEKLESDLK---KEIKKL-QRLRDQIKTWQSSS--------------- 68 (575)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHH---HHHHHH-HHHHHHHHhhhccc---------------
Confidence 57788888888889988888888776666554333333222 223222 33444444443221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 130 VDRTRISVTNGLRVKLRDLMNDFQSLRGKV 159 (299)
Q Consensus 130 ~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~ 159 (299)
+..= +..+..-++-.-..|.+|..++...
T Consensus 69 dIKD-K~~L~d~RrlIE~~MErfK~vEke~ 97 (575)
T KOG2150|consen 69 DIKD-KDSLLDNRRLIEQRMERFKAVEKEM 97 (575)
T ss_pred cccc-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 1233334455566789999887543
No 128
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=36.40 E-value=3.5e+02 Score=25.07 Aligned_cols=67 Identities=25% Similarity=0.245 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 87 DRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKV 159 (299)
Q Consensus 87 ~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~ 159 (299)
.+|+.+-..|-.....+...|+.|..++.. .++ +-.|. ...-.+++..|.++|+.+......++..|
T Consensus 230 ~QM~s~~~nIe~~~~~~~~~Ldklh~eit~--~LE---kI~SR-EK~lNnqL~~l~q~fr~a~~~lse~~e~y 296 (384)
T KOG0972|consen 230 EQMNSMHKNIEQKVGNVGPYLDKLHKEITK--ALE---KIASR-EKSLNNQLASLMQKFRRATDTLSELREKY 296 (384)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666667777777777766542 121 00011 11224555555555555555555444333
No 129
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=35.00 E-value=66 Score=20.86 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 022319 276 WVCWVWAVGLIILLVCLISL 295 (299)
Q Consensus 276 ~~c~~i~~~iIv~lvi~~~i 295 (299)
|+.+++-++||+.++.-+|+
T Consensus 4 wlt~iFsvvIil~If~~iGl 23 (49)
T PF11044_consen 4 WLTTIFSVVIILGIFAWIGL 23 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555544444443
No 130
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=34.30 E-value=1.3e+02 Score=29.06 Aligned_cols=7 Identities=14% Similarity=0.866 Sum_probs=3.7
Q ss_pred hHHHHHH
Q 022319 275 SWVCWVW 281 (299)
Q Consensus 275 k~~c~~i 281 (299)
||+..+.
T Consensus 185 Rw~~~~~ 191 (406)
T PF04906_consen 185 RWLAYLG 191 (406)
T ss_pred HHHHHHH
Confidence 7764433
No 131
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=34.29 E-value=2.1e+02 Score=21.78 Aligned_cols=43 Identities=5% Similarity=0.034 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 022319 212 HEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAG 254 (299)
Q Consensus 212 ~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~ 254 (299)
..-|.+||..-..+..-+.++-.=++.|..+-++.+.+++.-.
T Consensus 10 e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 10 EWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 3457888888887777777777788889999988888887743
No 132
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.06 E-value=2.3e+02 Score=24.69 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022319 210 ERHEAVMDIQRSLTKLH 226 (299)
Q Consensus 210 ~R~~eI~~LE~sI~EL~ 226 (299)
+|..+.-..|.++.+++
T Consensus 128 ~~~~~~~~mena~~~I~ 144 (209)
T KOG1693|consen 128 NRDTALTQMENAIVEIH 144 (209)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 44445555555555444
No 133
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=33.70 E-value=2.4e+02 Score=26.81 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 022319 217 DIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNF 256 (299)
Q Consensus 217 ~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ 256 (299)
.+...+.....+|-++-.-...-||.=-+++.-...+.+|
T Consensus 110 sls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~~ 149 (399)
T PRK10573 110 AFSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLARQ 149 (399)
T ss_pred cHHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 3555666555566555444445566666666666666655
No 134
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=33.05 E-value=2.5e+02 Score=23.37 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 206 QRSKERHEAVMDIQRSLTKLHQVFLDMAV 234 (299)
Q Consensus 206 ~~i~~R~~eI~~LE~sI~EL~~lF~dla~ 234 (299)
.-+..|+..++.+-..++ .+..|+|+
T Consensus 55 ~~lr~Rydrlr~va~rvQ---~vlgd~At 80 (156)
T PF08372_consen 55 DSLRMRYDRLRSVAGRVQ---NVLGDVAT 80 (156)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 355679998888877654 34555544
No 135
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=33.04 E-value=38 Score=24.39 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=13.4
Q ss_pred hhh-hHHHHHHHHHHHHHHHHHH
Q 022319 272 KKR-SWVCWVWAVGLIILLVCLI 293 (299)
Q Consensus 272 k~~-k~~c~~i~~~iIv~lvi~~ 293 (299)
++. +|.-|+++++.++++++++
T Consensus 40 ~~~~~~~~~~~~ii~ii~v~ii~ 62 (72)
T PF12575_consen 40 NKNNKNFNWIILIISIIFVLIIV 62 (72)
T ss_pred cCCCCcchHHHHHHHHHHHHHHH
Confidence 344 7777777766665555444
No 136
>PF15102 TMEM154: TMEM154 protein family
Probab=32.50 E-value=29 Score=28.54 Aligned_cols=9 Identities=11% Similarity=0.176 Sum_probs=3.4
Q ss_pred HHHHHhhcc
Q 022319 290 VCLISLLTS 298 (299)
Q Consensus 290 vi~~~i~~~ 298 (299)
||++.++.|
T Consensus 75 vV~lv~~~k 83 (146)
T PF15102_consen 75 VVCLVIYYK 83 (146)
T ss_pred HHHheeEEe
Confidence 333333433
No 137
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=32.44 E-value=33 Score=33.08 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 022319 275 SWVCWVWAVGLIILLVCLISLLT 297 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~~ 297 (299)
.+++++++++++++++|.+|+++
T Consensus 62 ~K~~~G~~~~~~li~iiw~PLll 84 (422)
T PF12166_consen 62 VKYLMGGLLLLLLIIIIWFPLLL 84 (422)
T ss_pred EEeeehHHHHHHHHHHHHHHHHH
Confidence 45677788788888888888864
No 138
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=31.91 E-value=90 Score=22.08 Aligned_cols=15 Identities=0% Similarity=0.144 Sum_probs=11.5
Q ss_pred CCCCCHHHHHHHhhC
Q 022319 176 GEEPSEDVIEKVISG 190 (299)
Q Consensus 176 ~~~~tdeeie~~le~ 190 (299)
-|++++.++.++++.
T Consensus 26 ~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 26 LPDATPTELKELVEK 40 (68)
T ss_dssp -TTS-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 388999999999875
No 139
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.63 E-value=45 Score=23.88 Aligned_cols=9 Identities=0% Similarity=-0.142 Sum_probs=4.0
Q ss_pred HHHHHHhhc
Q 022319 289 LVCLISLLT 297 (299)
Q Consensus 289 lvi~~~i~~ 297 (299)
+.+++|.++
T Consensus 16 ~G~~~G~fi 24 (71)
T COG3763 16 AGLIGGFFI 24 (71)
T ss_pred HHHHHHHHH
Confidence 334445443
No 140
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=31.36 E-value=1.1e+02 Score=26.69 Aligned_cols=15 Identities=7% Similarity=0.198 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q 022319 211 RHEAVMDIQRSLTKL 225 (299)
Q Consensus 211 R~~eI~~LE~sI~EL 225 (299)
-++++.+++..|.++
T Consensus 106 W~~~i~~~~~~i~~l 120 (204)
T PF00517_consen 106 WEKEISNYTGNIYNL 120 (204)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHH
Confidence 556666666555444
No 141
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=31.02 E-value=1.3e+02 Score=30.50 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 022319 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKM 243 (299)
Q Consensus 211 R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~I 243 (299)
=+.++..++.+|..|++=..-|+.+|-+----+
T Consensus 433 ~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~l 465 (561)
T PF00429_consen 433 LEEDLQALEDSISALQEQLTSLAEVVLQNRRAL 465 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 355566666666666666655555555443333
No 142
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=30.36 E-value=2.6e+02 Score=21.67 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=13.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 022319 268 NQTRKKRSWVCWVWAVGLIILLVCLISLLTSR 299 (299)
Q Consensus 268 ~~~qk~~k~~c~~i~~~iIv~lvi~~~i~~~~ 299 (299)
..|-+-+.|.-++|...+ -+++|+++.|
T Consensus 76 D~yV~e~PWq~VGvaAaV----GlllGlLlsR 103 (104)
T COG4575 76 DDYVRENPWQGVGVAAAV----GLLLGLLLSR 103 (104)
T ss_pred HHHHHcCCchHHHHHHHH----HHHHHHHHhc
Confidence 334444456655554433 3445555443
No 143
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=30.01 E-value=53 Score=31.57 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022319 50 DAIKGEMEEITNLLLDLQ 67 (299)
Q Consensus 50 ~~I~~~I~~i~~~i~~L~ 67 (299)
..|..++..|..-++.|.
T Consensus 69 ~~i~~~~dri~~wLe~l~ 86 (436)
T PTZ00208 69 GYIEFELDRLDYWLEKLN 86 (436)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 344445555555555554
No 144
>PRK11901 hypothetical protein; Reviewed
Probab=29.51 E-value=53 Score=30.71 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 022319 277 VCWVWAVGLIILLVCLISLLTS 298 (299)
Q Consensus 277 ~c~~i~~~iIv~lvi~~~i~~~ 298 (299)
|+|+|-|+++++|||.||--+|
T Consensus 38 ~MiGiGilVLlLLIi~IgSALk 59 (327)
T PRK11901 38 MMIGIGILVLLLLIIAIGSALK 59 (327)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 4566555555666666665544
No 145
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=29.46 E-value=7.1e+02 Score=26.41 Aligned_cols=72 Identities=18% Similarity=0.319 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHH-HHHHHHH-HHHHHHHHHHh
Q 022319 222 LTKLHQVFLDMAVLVETQEEKMDD-IEENVANAGNFISGGTNSLYYANQTRKKR---SWV-CWVWAVG-LIILLVCLISL 295 (299)
Q Consensus 222 I~EL~~lF~dla~LV~eQGe~Id~-Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~---k~~-c~~i~~~-iIv~lvi~~~i 295 (299)
+.++.....+...-+..+.+.+-. +..++...... ..+.+..+..+-.+. ||+ ++++|++ ++|+++.++|+
T Consensus 359 v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~---~~~~~~~~~~~~~~y~~yR~~~~lil~~~llLIv~~~~lGL 435 (806)
T PF05478_consen 359 VPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNN---TERSSRSFEDEYEKYDSYRWIVGLILCCVLLLIVLCLLLGL 435 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555554443 33333333333 334444444444444 775 3333333 33334555555
Q ss_pred h
Q 022319 296 L 296 (299)
Q Consensus 296 ~ 296 (299)
+
T Consensus 436 l 436 (806)
T PF05478_consen 436 L 436 (806)
T ss_pred H
Confidence 3
No 146
>PHA02662 ORF131 putative membrane protein; Provisional
Probab=29.18 E-value=45 Score=29.38 Aligned_cols=25 Identities=4% Similarity=-0.008 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 135 ISVTNGLRVKLRDLMNDFQSLRGKV 159 (299)
Q Consensus 135 ~~q~~~L~~~f~~~~~~f~~~Q~~~ 159 (299)
..++..+.+.|.+++...-..|..|
T Consensus 73 ~~sf~lll~Al~Et~~~Lp~~qK~~ 97 (226)
T PHA02662 73 ADALALASAALAETLAELPRADRLA 97 (226)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4567778888888888887766544
No 147
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.02 E-value=6.1e+02 Score=25.57 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=45.4
Q ss_pred CCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 36 PRDEENLTQFFQEVDAIK-GEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDK 112 (299)
Q Consensus 36 ~~~~~~~~~f~~~v~~I~-~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~ 112 (299)
+.+...+..|-..-++|- ..+..|...+.+......+.. .......-..++..++.+......|...|..+..
T Consensus 56 Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~r----f~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~ 129 (560)
T PF06160_consen 56 GQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYR----FKKAKQAIKEIEEQLDEIEEDIKEILDELDELLE 129 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677888887887 678888888888888876532 2223333445555555555555555555555543
No 148
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=28.93 E-value=3.3e+02 Score=25.82 Aligned_cols=56 Identities=7% Similarity=0.142 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISG 259 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~ 259 (299)
..+..+.++-++=..+...+.+.. +|-.+..-...-||.--+.+.-.....++.++
T Consensus 300 ~~~~~i~~~v~~G~sls~al~~~~-~fp~~~~~~i~~GE~sG~L~~~L~~la~~~~~ 355 (399)
T PRK10573 300 QALTQIQQQIAQGIPLWLALKNHP-LFPPLCLQLVRVGEESGSLDLMLENLAHWHQE 355 (399)
T ss_pred HHHHHHHHHHHCcccHHHHHhhCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 344444444444445666666655 77777766677888777777777776666654
No 149
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=28.71 E-value=1.9e+02 Score=19.68 Aligned_cols=53 Identities=8% Similarity=0.106 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 215 VMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYA 267 (299)
Q Consensus 215 I~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA 267 (299)
|.+-.+.+.|.-++=.+...-...|++.|.++...+..+..++..+..-|..-
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I 62 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRI 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44445555666666677777788999999999999999999999998888654
No 150
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.58 E-value=5.5e+02 Score=24.91 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 022319 214 AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANA 253 (299)
Q Consensus 214 eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a 253 (299)
+...+.++-.+|+.-..+|-.+| ++-|+|..++.++
T Consensus 378 e~d~v~k~~~~l~~qiremkq~v----~~t~ni~~~~a~~ 413 (497)
T KOG3838|consen 378 ENDDVAKVQALLLGQIREMKQLV----EMTDNIVRMAAHA 413 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhcc
Confidence 44556677777777788888888 7788888775544
No 151
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.47 E-value=46 Score=26.59 Aligned_cols=10 Identities=10% Similarity=0.119 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 022319 276 WVCWVWAVGL 285 (299)
Q Consensus 276 ~~c~~i~~~i 285 (299)
++|+++++.+
T Consensus 68 ~Ii~gv~aGv 77 (122)
T PF01102_consen 68 GIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHH
T ss_pred ehhHHHHHHH
Confidence 4455544444
No 152
>PHA02414 hypothetical protein
Probab=28.29 E-value=2.7e+02 Score=21.27 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 022319 214 AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFIS 258 (299)
Q Consensus 214 eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve 258 (299)
+-..|+..+.||++|..-|..=|.-|.|-=-.|-|.++.-..-++
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~ 74 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS 74 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH
Confidence 445788889999999887777777777777777777766554443
No 153
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.95 E-value=1.3e+02 Score=22.15 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 208 SKERHEAVMDIQRSLTKLHQVFLDMAVLV 236 (299)
Q Consensus 208 i~~R~~eI~~LE~sI~EL~~lF~dla~LV 236 (299)
+++...+|..|+..+.-..++..++..+|
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677788888888888888888887765
No 154
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=27.56 E-value=9.2e+02 Score=27.11 Aligned_cols=21 Identities=14% Similarity=0.346 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 022319 240 EEKMDDIEENVANAGNFISGG 260 (299)
Q Consensus 240 Ge~Id~Ie~nv~~a~~~ve~a 260 (299)
++.|+.|+.-...|..-+..|
T Consensus 1597 ~~~l~kv~~~t~~aE~~~~~a 1617 (1758)
T KOG0994|consen 1597 QQLLAKVQEETAAAEKLATSA 1617 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333
No 155
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=27.34 E-value=2.9e+02 Score=23.81 Aligned_cols=64 Identities=16% Similarity=0.348 Sum_probs=42.2
Q ss_pred HHhhCCCccchhh-------h-hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 022319 186 KVISGSGKVEILE-------G-KTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNF 256 (299)
Q Consensus 186 ~~le~~~~~~~~q-------~-~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ 256 (299)
.++++|++--|.. | -....+..+++|+..+.+|++.-.++-. .+.+||-+-+.+...+..|..-
T Consensus 17 ~Ll~eG~TvPFIARYRKe~TG~Lde~~lR~i~~~~~~~~~L~~Rk~~il~-------~i~eqgkLt~eL~~~I~~a~tl 88 (193)
T PF09371_consen 17 KLLDEGNTVPFIARYRKEMTGGLDEVQLREIQDRYEYLRELEKRKESILK-------SIEEQGKLTPELKQAIENATTL 88 (193)
T ss_dssp HHHHTT--HHHHHHH-HHHHTS--HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTT---HHHHHHHHH--SH
T ss_pred HHHhCCCCcchhhhhhhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcccCCHHHHHHHHhcCCH
Confidence 3667777655653 2 2347889999999999999998887765 4668888888888888777653
No 156
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=26.99 E-value=2.6e+02 Score=20.65 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 022319 223 TKLHQVFLDMAVLVE 237 (299)
Q Consensus 223 ~EL~~lF~dla~LV~ 237 (299)
.+|+++..|+..|+.
T Consensus 5 ~~l~~l~~d~~~l~~ 19 (94)
T PF05957_consen 5 AELEQLRADLEDLAR 19 (94)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666663
No 157
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=26.84 E-value=4.9e+02 Score=23.70 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 206 QRSKERHEAVMDIQRSLTKLHQVFLD 231 (299)
Q Consensus 206 ~~i~~R~~eI~~LE~sI~EL~~lF~d 231 (299)
..+++...+|+.|++....+.+...|
T Consensus 285 q~Lketr~~Iq~l~k~~~q~sqav~d 310 (330)
T KOG2991|consen 285 QKLKETRKEIQRLKKGLEQVSQAVGD 310 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46778899999999999888877654
No 158
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=26.59 E-value=40 Score=25.85 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 022319 275 SWVCWVWAVGLIILLVCL 292 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~ 292 (299)
-|+.++.|+.++|++.++
T Consensus 64 ili~lls~v~IlVily~I 81 (101)
T PF06024_consen 64 ILISLLSFVCILVILYAI 81 (101)
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 676555555555554333
No 159
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=26.18 E-value=92 Score=20.08 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 022319 276 WVCWVWAVGLIILLVC 291 (299)
Q Consensus 276 ~~c~~i~~~iIv~lvi 291 (299)
|.++.+.+++++++++
T Consensus 8 W~sYg~t~~~l~~l~~ 23 (46)
T PF04995_consen 8 WSSYGVTALVLAGLIV 23 (46)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777766665533
No 160
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=26.17 E-value=73 Score=23.61 Aligned_cols=17 Identities=12% Similarity=0.534 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022319 280 VWAVGLIILLVCLISLL 296 (299)
Q Consensus 280 ~i~~~iIv~lvi~~~i~ 296 (299)
++.+++++++||++-++
T Consensus 27 lMtILivLVIIiLlIml 43 (85)
T PF10717_consen 27 LMTILIVLVIIILLIML 43 (85)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 161
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=26.09 E-value=99 Score=22.18 Aligned_cols=6 Identities=0% Similarity=0.230 Sum_probs=3.1
Q ss_pred HHhhhh
Q 022319 269 QTRKKR 274 (299)
Q Consensus 269 ~~qk~~ 274 (299)
+|-|++
T Consensus 8 ~Y~rrS 13 (72)
T PF13198_consen 8 EYPRRS 13 (72)
T ss_pred Hccchh
Confidence 455555
No 162
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.94 E-value=4.7e+02 Score=23.23 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=6.9
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 022319 231 DMAVLVETQEEKMDDIEE 248 (299)
Q Consensus 231 dla~LV~eQGe~Id~Ie~ 248 (299)
++..+-.++..+-+++++
T Consensus 177 eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 177 EIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHhhce
Confidence 333333333333344443
No 163
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=25.53 E-value=6.4e+02 Score=24.63 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 87 DRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKED 166 (299)
Q Consensus 87 ~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~ 166 (299)
.+|+...+.+-..+..++..++.|.+.+.. | +..| ...|+..+.+.+..+..+.+..+. |....+-.
T Consensus 213 ~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~-R----gVRp-------~~~qLe~v~kdi~~a~keL~~m~~-~i~~eKP~ 279 (426)
T smart00806 213 KKLSEDSDSLLTKVDDLQDIIEALRKDVAQ-R----GVRP-------SKKQLETVQKELETARKELKKMEE-YIDIEKPI 279 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c----CCCC-------CHHHHHHHHHHHHHHHHHHHHHHH-HHhhcChH
Confidence 344444444444455555556666655432 0 2222 245666777777777777777653 22211111
Q ss_pred HHhhhhccCCCCCCHHHHHHHhhCCCccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022319 167 LKRRYYNATGEEPSEDVIEKVISGSGKVEILEGKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQ 239 (299)
Q Consensus 167 ~~rr~~~i~~~~~tdeeie~~le~~~~~~~~q~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQ 239 (299)
...+ =+.|++.+++. ++|+. --..=+..|...+.-+.+.|.-+...+.+|
T Consensus 280 ----WkKi-----WE~EL~~VcEE---qqfL~-----------lQedL~~DL~dDL~ka~eTf~lVeq~~~eQ 329 (426)
T smart00806 280 ----WKKI-----WEAELDKVCEE---QQFLT-----------LQEDLIADLKEDLEKAEETFDLVEQCCEEQ 329 (426)
T ss_pred ----HHHH-----HHHHHHHHHHH---HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 25577777764 34542 011224556666667777777777777777
No 164
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.35 E-value=5.5e+02 Score=23.76 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR--SWVCWV 280 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~--k~~c~~ 280 (299)
.+...|+.+-.||-.| ..+|..|..+=..+|.-=+..+|.++-||+.|...+-+--..+ ..-|.. |.+.++
T Consensus 227 ~~~q~IEstIsElG~I---F~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~v----SSNRwLmvkiF~i~ 299 (311)
T KOG0812|consen 227 KTMQNIESTISELGGI---FQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERV----SSNRWLMVKIFGIL 299 (311)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHh----ccchHHHHHHHHHH
Confidence 4555666666666655 6677788888888888888899999999999998886655554 445666 665555
Q ss_pred HHHHHHHHH
Q 022319 281 WAVGLIILL 289 (299)
Q Consensus 281 i~~~iIv~l 289 (299)
|++.+|-+|
T Consensus 300 ivFflvfvl 308 (311)
T KOG0812|consen 300 IVFFLVFVL 308 (311)
T ss_pred HHHHHHHHH
Confidence 555444433
No 165
>PRK13673 hypothetical protein; Provisional
Probab=24.78 E-value=1.6e+02 Score=23.44 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHh
Q 022319 260 GTNSLYYANQTRKKR---SWVCWVWAVGLIILLVCLISL 295 (299)
Q Consensus 260 a~~eL~kA~~~qk~~---k~~c~~i~~~iIv~lvi~~~i 295 (299)
|--|..-+++.+.+. -|+.+++++++++.+-+.+|.
T Consensus 75 g~mEm~l~r~kk~k~~~~~~~~~ii~lvlti~lG~~Lp~ 113 (118)
T PRK13673 75 GLMEMSLAKRKKGKPTGGFWWIFIIVLVLTILLGLILPL 113 (118)
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555444 444444444444434444443
No 166
>PRK14710 hypothetical protein; Provisional
Probab=24.61 E-value=98 Score=22.18 Aligned_cols=13 Identities=23% Similarity=-0.002 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHH
Q 022319 275 SWVCWVWAVGLII 287 (299)
Q Consensus 275 k~~c~~i~~~iIv 287 (299)
.+|.+.|+.+||+
T Consensus 9 skm~ififaiii~ 21 (86)
T PRK14710 9 SKMIIFIFAIIII 21 (86)
T ss_pred hHHHHHHHHHHHH
Confidence 4455554444333
No 167
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=24.46 E-value=2.6e+02 Score=21.53 Aligned_cols=20 Identities=5% Similarity=-0.004 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 022319 255 NFISGGTNSLYYANQTRKKR 274 (299)
Q Consensus 255 ~~ve~a~~eL~kA~~~qk~~ 274 (299)
..|.....-..+|++..+++
T Consensus 18 ~~v~~~~~R~~~a~r~~~~~ 37 (100)
T TIGR02230 18 KRVGDKELRKLRARKNATRS 37 (100)
T ss_pred HHHHHHHHHHHHHHhcCCCc
Confidence 34444444555666644444
No 168
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=24.40 E-value=4.3e+02 Score=22.21 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=9.0
Q ss_pred cchHHHHHHHHHHH
Q 022319 39 EENLTQFFQEVDAI 52 (299)
Q Consensus 39 ~~~~~~f~~~v~~I 52 (299)
..+++.||+....|
T Consensus 82 K~Pf~~~~k~~~~i 95 (163)
T PF03233_consen 82 KSPFESFFKDLSKI 95 (163)
T ss_pred CCcHHHHHHHHHHH
Confidence 34567888766655
No 169
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=24.38 E-value=1.1e+02 Score=25.83 Aligned_cols=29 Identities=7% Similarity=0.192 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-hHHH
Q 022319 250 VANAGNFISGGTNSLYYANQTRKKR-SWVC 278 (299)
Q Consensus 250 v~~a~~~ve~a~~eL~kA~~~qk~~-k~~c 278 (299)
+..-.-..++|.+.|.+-.+..... +|+-
T Consensus 77 ~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~ 106 (193)
T PF06738_consen 77 IVAGQLSLEEAIERLDEIDREPPRYPPWLV 106 (193)
T ss_pred HhcCCCCHHHHHHHHHHHhhCCCCCCHHHH
Confidence 3334455667788887765555455 6643
No 170
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=24.13 E-value=3.2e+02 Score=20.59 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 203 KDIQRSKERHEAVM-DIQRSLTKLHQVFLDMAVLVETQ-EEKMDDIEENVANAGNFISGGTNSLYYA 267 (299)
Q Consensus 203 ~~l~~i~~R~~eI~-~LE~sI~EL~~lF~dla~LV~eQ-Ge~Id~Ie~nv~~a~~~ve~a~~eL~kA 267 (299)
..+..+.+....+. +.+.--.++..-|..|-.++.+. ..+++.|+..-......+..-...+...
T Consensus 21 ~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~ 87 (127)
T smart00502 21 DALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQK 87 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544443 34444556677777777666644 5778888887766666665555555543
No 171
>PRK11020 hypothetical protein; Provisional
Probab=23.46 E-value=3.7e+02 Score=21.18 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHH
Q 022319 52 IKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRK 99 (299)
Q Consensus 52 I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~ 99 (299)
++.+|..+++.++.++..........+..-......+++.+..+|.++
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 50 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARL 50 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777666666655555555544555666666666665544
No 172
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=23.37 E-value=8.1e+02 Score=25.07 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 022319 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEEN 249 (299)
Q Consensus 211 R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~n 249 (299)
+....++.-+.+..||+.|.+|-..|.+=|...-.|..-
T Consensus 545 kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdL 583 (594)
T PF05667_consen 545 KDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDL 583 (594)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666788999999999999999999999999988766543
No 173
>PF12438 DUF3679: Protein of unknown function (DUF3679) ; InterPro: IPR020534 This entry contains proteins with no known function.
Probab=23.01 E-value=77 Score=21.69 Aligned_cols=11 Identities=18% Similarity=0.615 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 022319 285 LIILLVCLISL 295 (299)
Q Consensus 285 iIv~lvi~~~i 295 (299)
+|+++.|++|+
T Consensus 7 ~il~~gVl~Gm 17 (56)
T PF12438_consen 7 IILFFGVLLGM 17 (56)
T ss_pred HHHHHHHHHhH
Confidence 34444555554
No 174
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=22.97 E-value=70 Score=29.35 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccC
Q 022319 275 SWVCWVWAVGLIILLVCLISLLTSR 299 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~~~~ 299 (299)
+.+-+++++.+|++++++.-+++|+
T Consensus 276 ~l~piil~IG~vl~i~~Ig~~ifK~ 300 (305)
T PF04639_consen 276 SLLPIILIIGGVLLIVFIGYFIFKR 300 (305)
T ss_pred hhhHHHHHHHHHHHHHHhhheeeEe
Confidence 6666666666655554444455553
No 175
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=22.69 E-value=83 Score=24.18 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=4.8
Q ss_pred hHHHHHHHHH
Q 022319 275 SWVCWVWAVG 284 (299)
Q Consensus 275 k~~c~~i~~~ 284 (299)
-|+.|++.++
T Consensus 21 ~w~FWlv~~l 30 (102)
T PF11669_consen 21 LWYFWLVWVL 30 (102)
T ss_pred HHHHHHHHHH
Confidence 3555554433
No 176
>PTZ00464 SNF-7-like protein; Provisional
Probab=22.58 E-value=3.3e+02 Score=23.85 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=9.6
Q ss_pred ChhhhhHHHHHHHHHHHHHHHH
Q 022319 78 SGKVLRGLRDRMESDVASILRK 99 (299)
Q Consensus 78 ~~~~~~~l~~~i~~l~~~i~~~ 99 (299)
+.++...+-.+|.+.+....+.
T Consensus 122 ~id~Vd~l~Dei~E~~e~~~EI 143 (211)
T PTZ00464 122 NVDKVEDLQDELADLYEDTQEI 143 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333
No 177
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.49 E-value=8.5e+02 Score=24.99 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=25.5
Q ss_pred hhhhhHHhhHhhhhhhhhc-ccccccCCCCCCcchHHHHHHHHHHHHH
Q 022319 8 SFLSYVELKKQAQKDLEAD-LDIERGQLNPRDEENLTQFFQEVDAIKG 54 (299)
Q Consensus 8 ~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~f~~~v~~I~~ 54 (299)
+-.||...+..+.+-+|.- .+|...+. ...|..||.-.+++..
T Consensus 90 s~~~~~~~~~~~l~~le~if~e~~~~gl----~~~l~~ff~al~~ls~ 133 (627)
T PRK06665 90 GRLGYWKTKDKYLSQLEQVYNEPEDQSL----RTRLDDFWDSWQDLSN 133 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcH----HHHHHHHHHHHHHHHh
Confidence 3446666666666666654 23333332 4567888887776654
No 178
>COG3162 Predicted membrane protein [Function unknown]
Probab=22.48 E-value=83 Score=24.15 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=5.8
Q ss_pred hhhh-hHHHHHHHHH
Q 022319 271 RKKR-SWVCWVWAVG 284 (299)
Q Consensus 271 qk~~-k~~c~~i~~~ 284 (299)
||++ -|..-++.++
T Consensus 21 kr~~Fa~~ltl~flv 35 (102)
T COG3162 21 KRRRFAVPLTLIFLV 35 (102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3444 4444443333
No 179
>PF14992 TMCO5: TMCO5 family
Probab=22.40 E-value=6.1e+02 Score=23.29 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 022319 202 EKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFI 257 (299)
Q Consensus 202 ~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~v 257 (299)
+.....+..-.++|.+++....+++++=.|=+.-+..=-+.+.+||...+-..-+.
T Consensus 119 qql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~ 174 (280)
T PF14992_consen 119 QQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEK 174 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777778888888888888888888888888877778888887655544433
No 180
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=22.23 E-value=54 Score=33.48 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccC
Q 022319 275 SWVCWVWAVGLIILLVCLISLLTSR 299 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~~~~ 299 (299)
..+.|+|++.|+.++++++.+++||
T Consensus 390 t~~~~~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 390 TAILIIIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666665
No 181
>PHA02690 hypothetical protein; Provisional
Probab=22.09 E-value=3.3e+02 Score=20.02 Aligned_cols=54 Identities=9% Similarity=0.154 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022319 241 EKMDDIEENVANAGNFISGGTNSLYYANQTRKKRSWVCWVWAVGLIILLVCLIS 294 (299)
Q Consensus 241 e~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~k~~c~~i~~~iIv~lvi~~~ 294 (299)
|-+|.|+.-.-....|.+.-..+++...---+..+++.+=+|+-+.|+.-|++-
T Consensus 8 erV~gi~~Ra~adrrYLeAIqrhlEgs~plLR~~~RlLfDL~lTvfV~myiv~R 61 (90)
T PHA02690 8 ERVDGIVERARADRRYLEAIQRHLEGSTPLLRQMWRLLFDLLLTVFVVMYIVFR 61 (90)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666667777777766654433333333333333333333334443
No 182
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.94 E-value=3e+02 Score=19.45 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 209 KERHEAVMDIQRSLTKLHQVFLDMAVLVE 237 (299)
Q Consensus 209 ~~R~~eI~~LE~sI~EL~~lF~dla~LV~ 237 (299)
.+|+..|..++..+.|..++...|..-|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999987774
No 183
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=21.94 E-value=4.4e+02 Score=24.54 Aligned_cols=34 Identities=3% Similarity=0.211 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 38 DEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNE 71 (299)
Q Consensus 38 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~ 71 (299)
+.+.+.++...+++....|..++..+.+|...|.
T Consensus 166 ~lPD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~ 199 (325)
T PF06694_consen 166 PLPDVSELEKKASELSKQLQSLQQQVAELASKHP 199 (325)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5677889999999999999999999999888876
No 184
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=21.89 E-value=3.1e+02 Score=19.63 Aligned_cols=37 Identities=5% Similarity=0.262 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 022319 210 ERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDI 246 (299)
Q Consensus 210 ~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~I 246 (299)
.+|+++...-..|..|..-+..|..++.+.+..++++
T Consensus 48 ~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 48 ENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555555555555444
No 185
>PRK10132 hypothetical protein; Provisional
Probab=21.62 E-value=3.9e+02 Score=20.74 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHHH
Q 022319 220 RSLTKLHQVFLDMAVLV----ETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR--------SWVCWVWAVGLII 287 (299)
Q Consensus 220 ~sI~EL~~lF~dla~LV----~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~--------k~~c~~i~~~iIv 287 (299)
+-..||+.|..++..|. ..-|+-++.+=..++.....+...-.+...+....+.+ +---|- .+.|..
T Consensus 16 ~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw~-svgiaa 94 (108)
T PRK10132 16 DIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPWC-SVGTAA 94 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcHH-HHHHHH
Confidence 33344444444544443 33344455555555554444444444333332222221 112344 445666
Q ss_pred HHHHHHHhhccC
Q 022319 288 LLVCLISLLTSR 299 (299)
Q Consensus 288 ~lvi~~~i~~~~ 299 (299)
++-+++|+++.|
T Consensus 95 gvG~llG~Ll~R 106 (108)
T PRK10132 95 AVGIFIGALLSL 106 (108)
T ss_pred HHHHHHHHHHhc
Confidence 677888887765
No 186
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=21.38 E-value=3.3e+02 Score=19.79 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022319 240 EEKMDDIEENVANAGNFISGGTNSLYYANQTRK 272 (299)
Q Consensus 240 Ge~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk 272 (299)
.--+|+.|..++.+...+..|..+-..|...--
T Consensus 38 nAkv~qLe~dv~a~~~~~qAAk~eaarAn~rld 70 (78)
T COG4238 38 NAKVDQLENDVNAMRSDVQAAKDEAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 345688899999999999999888777665433
No 187
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=21.17 E-value=2.9e+02 Score=21.06 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022319 43 TQFFQEVDAIKGEMEEITNLLLDLQNLNEG 72 (299)
Q Consensus 43 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~ 72 (299)
++|...++++..++++|...++.|....+.
T Consensus 69 d~~~e~ie~i~~dl~ei~e~~~~i~e~~~~ 98 (101)
T COG3388 69 DDFPEFIEEIIGDLSEINEEAENIEEDVAK 98 (101)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777778899999998888888877654
No 188
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=21.15 E-value=4.9e+02 Score=24.67 Aligned_cols=56 Identities=7% Similarity=0.119 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 022319 205 IQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGG 260 (299)
Q Consensus 205 l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a 260 (299)
+.++.++-+.=..+...+......|-++..-...-||.=-+++.....+.++.+.-
T Consensus 100 ~~~i~~~l~~G~sls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~~ 155 (399)
T TIGR02120 100 LAAIRSRVLEGKSLADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEER 155 (399)
T ss_pred HHHHHHHHHCCccHHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 33443333333345555655556677766655566666667777777777777653
No 189
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.15 E-value=1.1e+03 Score=25.89 Aligned_cols=53 Identities=11% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTKLHQVF-LDMAVLVETQEEKMDDIEENVANAGN 255 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~EL~~lF-~dla~LV~eQGe~Id~Ie~nv~~a~~ 255 (299)
...+.+++-..++..+++.|.+++.-+ +++.....+=..-+.++..-|+....
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~ 415 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE 415 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666667777777777766 55555555444445555555544444
No 190
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.01 E-value=72 Score=30.17 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 022319 275 SWVCWVWAVGLIILLVCLISL 295 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i 295 (299)
+|+.++++++++++.++++|+
T Consensus 189 ~~~vl~~~fvl~tlaivLFPL 209 (372)
T KOG2927|consen 189 MWQVLGVLFVLVTLAIVLFPL 209 (372)
T ss_pred hHHHHHHHHHHHHHHHHhccc
Confidence 666666666666666677665
No 191
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=20.92 E-value=81 Score=31.38 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 022319 275 SWVCWVWAVGLIILLVCLISLLT 297 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~~i~~ 297 (299)
-..|++++++.+++|+|+.||+.
T Consensus 44 Nlg~LilL~lGLL~LFigyPIlt 66 (504)
T PF03935_consen 44 NLGGLILLILGLLMLFIGYPILT 66 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhee
Confidence 44677777778888889998864
No 192
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=20.80 E-value=1.5e+02 Score=26.66 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHH
Q 022319 244 DDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVWAVG 284 (299)
Q Consensus 244 d~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~ 284 (299)
++|-..|++=..+++.|.++|.+=.+...+. +|++.+...+
T Consensus 93 ~~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~ 134 (250)
T COG2966 93 NRISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGL 134 (250)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHH
Confidence 3444455555667888888888766566666 8876554433
No 193
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=20.74 E-value=1.4e+02 Score=19.19 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q 022319 276 WVCWVWAVGLIILLV 290 (299)
Q Consensus 276 ~~c~~i~~~iIv~lv 290 (299)
|.++.+.++++++++
T Consensus 9 W~sYg~t~l~l~~li 23 (45)
T TIGR03141 9 WLAYGITALVLAGLI 23 (45)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777766665543
No 194
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=20.62 E-value=1.1e+02 Score=25.40 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 022319 259 GGTNSLYYANQTRKKRSWVCWVWAVGL 285 (299)
Q Consensus 259 ~a~~eL~kA~~~qk~~k~~c~~i~~~i 285 (299)
-|-..|.+=++-+-+..++|=++++++
T Consensus 114 PGyDsLLKkKEae~kr~K~Cki~~Li~ 140 (159)
T PF06789_consen 114 PGYDSLLKKKEAELKRSKVCKIFALIV 140 (159)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666664444444444454434333
No 195
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=20.56 E-value=3.1e+02 Score=21.73 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022319 41 NLTQFFQEVDAIKGEMEEITNLLLDLQNLNEG 72 (299)
Q Consensus 41 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~ 72 (299)
....|+..+.++-....+.+..+.+|++....
T Consensus 71 v~~~y~~~~~evL~sv~KtEeSL~rlkk~~~~ 102 (125)
T PF12022_consen 71 VTERYYEIASEVLTSVRKTEESLKRLKKRRKR 102 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34578888888888888888888888888654
No 196
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=20.50 E-value=3.1e+02 Score=24.62 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.3
Q ss_pred HHHHHh
Q 022319 290 VCLISL 295 (299)
Q Consensus 290 vi~~~i 295 (299)
++++|+
T Consensus 62 a~llPL 67 (239)
T COG3736 62 AILLPL 67 (239)
T ss_pred Hhhccc
Confidence 333443
No 197
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=20.26 E-value=7.5e+02 Score=23.46 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 130 VDRTRISVTNGLRVKLRDLMNDFQSLRG 157 (299)
Q Consensus 130 ~~rir~~q~~~L~~~f~~~~~~f~~~Q~ 157 (299)
..+.|+.....|.++.+++|.+++++-.
T Consensus 195 ml~kRQ~yI~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 195 MLDKRQAYIGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999998743
No 198
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.24 E-value=5.2e+02 Score=21.62 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=6.5
Q ss_pred HHHHHHHHhhhh--hHH
Q 022319 263 SLYYANQTRKKR--SWV 277 (299)
Q Consensus 263 eL~kA~~~qk~~--k~~ 277 (299)
.|+......|.- ||+
T Consensus 142 ~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 142 NLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 344444444444 553
No 199
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.14 E-value=4.4e+02 Score=25.43 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISG 259 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~ 259 (299)
..+..+...-+.=..+-..+..+...|-++-.....-||.--+++.-.+...+|.++
T Consensus 95 ~~l~~i~~~l~~G~sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~ 151 (397)
T COG1459 95 QVLTSILEELESGKSLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEK 151 (397)
T ss_pred HHHHHHHHHHHCCCcHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444444444444445555666666677777777777788877777777777777764
No 200
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=20.14 E-value=4.6e+02 Score=20.92 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022319 44 QFFQEVDAIKGEMEEITNLLLDL 66 (299)
Q Consensus 44 ~f~~~v~~I~~~I~~i~~~i~~L 66 (299)
+...++.++...+..+...+..|
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ai 25 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAI 25 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665555555
No 201
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=1.1e+02 Score=27.15 Aligned_cols=52 Identities=10% Similarity=-0.062 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHhh
Q 022319 245 DIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCWVWAVGLIILLVCLISLL 296 (299)
Q Consensus 245 ~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~~i~~~iIv~lvi~~~i~ 296 (299)
.|..|-+....-.+..-....+-+++.++. +|..+.+--+++|+..++++++
T Consensus 33 ~i~~~~~~~~~~~~c~c~~c~~~r~~~~~~~~k~~~~~~~i~lv~~W~v~~fL 85 (230)
T KOG0721|consen 33 LIPRNPEPPKRKEECQCHGCDKKRRKKAKVSPKSISTKRKVFLVVGWAVIAFL 85 (230)
T ss_pred HhccccchhhhhhHHhhhhhhhhhhhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 344344444444444444555555555555 4433332333334444454444
No 202
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=20.08 E-value=5.9 Score=29.26 Aligned_cols=6 Identities=17% Similarity=0.579 Sum_probs=0.7
Q ss_pred HHHHHH
Q 022319 277 VCWVWA 282 (299)
Q Consensus 277 ~c~~i~ 282 (299)
|+||++
T Consensus 67 wlwLli 72 (81)
T PF14812_consen 67 WLWLLI 72 (81)
T ss_dssp ----TT
T ss_pred hHHHHH
Confidence 344433
Done!