Query 022319
Match_columns 299
No_of_seqs 156 out of 1240
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 03:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 1.3E-46 4.3E-51 339.7 20.1 236 37-279 25-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 5.9E-41 2E-45 304.9 15.3 235 38-274 39-278 (279)
3 1fio_A SSO1 protein; four heli 100.0 3.9E-32 1.3E-36 234.4 19.2 185 41-240 3-196 (196)
4 3hd7_B Syntaxin-1A; membrane p 100.0 5E-29 1.7E-33 194.8 14.4 97 200-296 8-107 (109)
5 3c98_B Syntaxin-1A; protein co 99.9 1.7E-25 5.9E-30 201.1 18.6 238 35-279 35-279 (279)
6 1jth_B Syntaxin 1A; coiled-coi 99.9 6.5E-26 2.2E-30 166.4 10.0 76 204-279 1-77 (77)
7 2nps_B Syntaxin 13, vesicle-as 99.9 9.4E-24 3.2E-28 152.4 10.0 69 209-277 2-71 (71)
8 3b5n_B Protein SSO1; snare com 99.9 2.1E-23 7E-28 149.7 10.7 69 204-272 1-69 (69)
9 1sfc_B Protein (syntaxin 1A), 99.9 2.2E-23 7.5E-28 155.0 9.8 75 200-274 8-82 (83)
10 1s94_A S-syntaxin; three helix 99.9 2.2E-23 7.5E-28 177.4 9.7 147 38-191 34-180 (180)
11 1n7s_B Syntaxin 1A; neuronal s 99.9 6.4E-22 2.2E-26 141.5 9.0 66 203-268 2-67 (68)
12 1gl2_B Syntaxin 7; membrane pr 99.8 2.2E-21 7.5E-26 137.4 8.2 64 206-269 2-65 (65)
13 1ez3_A Syntaxin-1A; three heli 99.8 6.7E-19 2.3E-23 141.2 16.0 123 38-166 3-125 (127)
14 2dnx_A Syntaxin-12; snare, HAB 99.0 1.6E-08 5.6E-13 80.8 15.5 113 43-167 10-122 (130)
15 3hd7_B Syntaxin-1A; membrane p 97.3 0.0075 2.6E-07 46.2 13.1 82 204-288 19-102 (109)
16 3hd7_A Vesicle-associated memb 97.2 0.014 4.9E-07 43.1 13.0 59 213-274 5-63 (91)
17 1hs7_A Syntaxin VAM3; UP-and-D 97.0 0.01 3.5E-07 44.4 10.8 85 51-164 7-92 (97)
18 1n7s_D SNAP-25A; neuronal snar 96.3 0.045 1.5E-06 37.8 9.6 55 212-266 9-63 (66)
19 1gl2_D Syntaxin 8, vesicle tra 96.0 0.031 1.1E-06 38.5 7.4 58 209-266 5-62 (65)
20 2nps_D Syntaxin-6; vesicle fus 96.0 0.034 1.2E-06 40.2 7.9 62 208-269 14-75 (82)
21 1sfc_D Protein (SNAP-25B), pro 95.9 0.077 2.6E-06 38.7 9.6 57 210-266 26-82 (87)
22 1nhl_A Synaptosomal-associated 95.4 0.11 3.9E-06 34.3 8.2 45 221-265 8-52 (54)
23 1l4a_D S-SNAP25 fusion protein 94.7 0.13 4.4E-06 37.6 7.5 55 212-266 29-83 (87)
24 3b5n_D Protein transport prote 94.6 0.28 9.6E-06 33.6 8.6 54 212-265 9-62 (64)
25 3b5n_C Protein transport prote 94.1 0.46 1.6E-05 33.1 8.9 37 234-270 33-69 (70)
26 2kog_A Vesicle-associated memb 93.8 0.0074 2.5E-07 47.0 -0.9 38 214-251 34-71 (119)
27 1n7s_C SNAP-25A; neuronal snar 93.6 1.2 4E-05 31.8 10.5 52 215-266 25-76 (79)
28 1l4a_C S-SNAP25 fusion protein 90.9 1.1 3.7E-05 32.3 7.4 42 223-264 37-78 (83)
29 4dnd_A Syntaxin-10, SYN10; str 90.3 4.8 0.00016 31.4 11.4 95 45-147 29-123 (130)
30 3uun_A Dystrophin; triple heli 71.3 27 0.00091 25.4 12.7 73 39-111 35-109 (119)
31 1gl2_C VTI1B, vesicle transpor 70.6 21 0.00073 24.0 8.4 50 216-265 12-61 (65)
32 3uul_A Utrophin; spectrin repe 69.9 29 0.00099 25.2 12.6 73 39-111 35-109 (118)
33 2ke4_A CDC42-interacting prote 63.0 31 0.0011 25.3 7.2 56 42-97 17-72 (98)
34 2nps_B Syntaxin 13, vesicle-as 60.9 36 0.0012 23.1 8.4 63 207-269 7-69 (71)
35 1sfc_A VAMP 2, protein (synapt 60.8 45 0.0016 24.2 9.1 40 213-252 30-69 (96)
36 1m1j_B Fibrinogen beta chain; 60.6 1.1E+02 0.0039 28.8 13.1 31 41-71 86-117 (464)
37 1n7s_A Vesicle-associated memb 59.0 36 0.0012 22.5 8.4 40 213-252 4-43 (63)
38 3hd7_A Vesicle-associated memb 58.8 47 0.0016 23.8 12.5 22 203-224 23-44 (91)
39 2kog_A Vesicle-associated memb 56.9 11 0.00039 28.7 4.0 19 275-293 97-115 (119)
40 1deq_A Fibrinogen (alpha chain 56.5 1.2E+02 0.004 27.8 11.2 29 45-73 58-86 (390)
41 3efg_A Protein SLYX homolog; x 55.7 41 0.0014 23.5 6.5 47 214-260 15-61 (78)
42 3ghg_A Fibrinogen alpha chain; 55.6 1.5E+02 0.005 28.4 13.8 24 136-159 131-154 (562)
43 1spf_A Pulmonary surfactant-as 49.6 23 0.00078 20.5 3.4 8 275-282 11-18 (35)
44 3b5n_A Synaptobrevin homolog 1 49.2 54 0.0018 21.5 8.2 39 214-252 3-41 (61)
45 3c98_B Syntaxin-1A; protein co 46.1 1.3E+02 0.0044 25.1 10.0 219 39-270 43-276 (279)
46 2lf0_A Uncharacterized protein 43.7 85 0.0029 23.8 6.8 48 52-99 8-55 (123)
47 2nps_A VAMP-4, vesicle-associa 43.7 54 0.0018 22.5 5.5 38 215-252 10-47 (74)
48 1n7s_B Syntaxin 1A; neuronal s 43.1 72 0.0025 21.3 10.0 62 213-274 5-66 (68)
49 1zke_A Hypothetical protein HP 41.2 51 0.0017 23.0 4.8 51 7-75 30-80 (83)
50 2l5g_B Putative uncharacterize 40.0 62 0.0021 19.8 4.5 30 43-72 5-34 (42)
51 3b5n_B Protein SSO1; snare com 39.6 84 0.0029 21.1 10.0 61 214-274 4-64 (69)
52 3ajm_A Programmed cell death p 36.9 1.9E+02 0.0063 24.2 10.8 21 93-113 121-141 (213)
53 2ap3_A Conserved hypothetical 36.6 1.8E+02 0.0062 24.0 12.6 90 26-115 4-94 (199)
54 2p22_C Protein SRN2; endosome, 36.2 1.3E+02 0.0045 24.7 7.7 25 23-47 8-36 (192)
55 3okq_A BUD site selection prot 34.9 1.6E+02 0.0055 23.0 9.8 56 45-100 19-74 (141)
56 1m1j_C Fibrinogen gamma chain; 34.8 2.8E+02 0.0094 25.6 13.9 42 24-72 14-56 (409)
57 3t98_B Nucleoporin NUP58/NUP45 34.3 1.3E+02 0.0044 21.7 10.0 30 42-71 7-36 (93)
58 2jwa_A Receptor tyrosine-prote 34.2 21 0.00072 22.3 1.8 8 291-298 29-36 (44)
59 1gl2_B Syntaxin 7; membrane pr 32.6 1.1E+02 0.0037 20.2 8.5 48 213-260 16-63 (65)
60 2ww9_B Protein transport prote 32.1 22 0.00075 25.2 1.9 32 241-272 13-44 (80)
61 1jth_B Syntaxin 1A; coiled-coi 30.9 1.3E+02 0.0043 20.6 9.9 62 207-268 11-72 (77)
62 2c5k_T Syntaxin TLG1, T-snare 29.5 1.6E+02 0.0054 21.2 10.2 84 45-152 8-91 (95)
63 2l5g_A GPS2 protein, G protein 27.3 85 0.0029 18.7 3.5 23 209-231 11-37 (38)
64 3swy_A Cyclic nucleotide-gated 26.3 1.2E+02 0.0042 18.9 5.0 24 135-158 11-34 (46)
65 3fym_A Putative uncharacterize 25.2 15 0.00051 28.1 0.0 8 276-283 107-114 (130)
66 1l4a_A Synaptobrevin; snare, s 24.2 1.8E+02 0.0061 20.1 5.7 39 214-252 16-54 (80)
67 3swf_A CGMP-gated cation chann 24.0 1.6E+02 0.0053 20.4 5.0 24 135-158 13-36 (74)
68 2k9y_A Ephrin type-A receptor 23.6 95 0.0033 18.3 3.5 12 276-287 14-25 (41)
69 1qu7_A Methyl-accepting chemot 23.6 3.2E+02 0.011 22.7 8.7 49 211-259 145-193 (227)
70 1sfc_B Protein (syntaxin 1A), 23.4 1.9E+02 0.0065 20.0 9.9 56 207-262 22-77 (83)
71 4aj5_K Spindle and kinetochore 23.2 2.5E+02 0.0085 21.3 7.2 37 222-261 59-95 (123)
72 1m1j_A Fibrinogen alpha subuni 23.1 4.7E+02 0.016 24.5 15.4 37 36-72 47-83 (491)
73 3n27_A Fusion glycoprotein F0, 22.0 2.1E+02 0.0071 20.0 9.6 61 208-270 15-75 (80)
74 2beq_A E2 glycoprotein; viral 20.7 1.5E+02 0.005 17.8 4.3 31 216-246 2-32 (38)
75 2nps_C Vesicle transport throu 20.6 2.2E+02 0.0075 19.7 8.6 52 215-266 21-72 (81)
76 1m56_D Cytochrome C oxidase; m 20.4 70 0.0024 20.5 2.5 6 275-280 33-38 (51)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=1.3e-46 Score=339.69 Aligned_cols=236 Identities=20% Similarity=0.354 Sum_probs=195.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 022319 37 RDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMI 116 (299)
Q Consensus 37 ~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~ 116 (299)
.++++|+.||..|++|+..|..|..++.+|.++|.++++.+++ ...++.+|+.++.+++++++.|+.+|+.|+..+..
T Consensus 25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~ 102 (267)
T 1dn1_B 25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 102 (267)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999988776554 34789999999999999999999999999987542
Q ss_pred hhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCccch
Q 022319 117 NRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVEI 196 (299)
Q Consensus 117 ~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~~~~ 196 (299)
.+ ++.+++++.|+|++|+.+|+++|+++|.+|+.+|..|+.+++.++.| |+.|.||++|++++++++++|+++.|
T Consensus 103 ---~~-~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~R-q~~i~~~~~tdeeie~~ie~g~~~~f 177 (267)
T 1dn1_B 103 ---EE-GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR-QLEITGRTTTSEELEDMLESGNPAIF 177 (267)
T ss_dssp ---HH-HTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCCCHHHHHHHHHTCSSCTT
T ss_pred ---cc-ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhhccCCCCCHHHHHHHHhCCcHHHH
Confidence 12 23344567899999999999999999999999999999999999985 67788999999999999999988888
Q ss_pred hhh------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 197 LEG------KTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQT 270 (299)
Q Consensus 197 ~q~------~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~ 270 (299)
.++ .++.++.++++||++|.+||++|.|||+||.|||.||++||++||+||+||++|..||+.|..+|.+|.+|
T Consensus 178 ~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 257 (267)
T 1dn1_B 178 ASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 257 (267)
T ss_dssp TTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 34589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh-hHHHH
Q 022319 271 RKKR-SWVCW 279 (299)
Q Consensus 271 qk~~-k~~c~ 279 (299)
|+++ ||.||
T Consensus 258 q~~~rkk~~~ 267 (267)
T 1dn1_B 258 QSKARRKKIM 267 (267)
T ss_dssp ----------
T ss_pred HHHhcCcccC
Confidence 9999 77775
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=5.9e-41 Score=304.87 Aligned_cols=235 Identities=24% Similarity=0.380 Sum_probs=181.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 022319 38 DEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMIN 117 (299)
Q Consensus 38 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~ 117 (299)
+++.|+.|+..|++|+..|..|..++..|.++|.+.++.+.+.+...++.+|+.++.+|+++++.|+..|+.|...+...
T Consensus 39 ~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~ 118 (279)
T 2xhe_B 39 PEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRA 118 (279)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999998777677666668999999999999999999999999999876432
Q ss_pred hhhhhhccCCC-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCccc
Q 022319 118 RMLSQAFKEGS-S-VDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKVE 195 (299)
Q Consensus 118 ~~~~~~~~~~s-~-~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~~~ 195 (299)
+..+ ++..++ + +.|++++++..|+++|+++|.+|+.+|..|...++.++. |++.+.+|.+++++++.++++|++..
T Consensus 119 ~~~~-~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~-R~~~i~~~~~~~ee~~~~~e~g~~~~ 196 (279)
T 2xhe_B 119 QQEG-TFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVA-RQCRVVEPSLSDDAIQKVIEHGTEGI 196 (279)
T ss_dssp HHHH-CCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCCSSCCCCSSTTHHHHHHHC----
T ss_pred hhcc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHhCCchHH
Confidence 2111 122232 3 669999999999999999999999999999988888876 46778889999999999999887777
Q ss_pred hhh---hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022319 196 ILE---GKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRK 272 (299)
Q Consensus 196 ~~q---~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk 272 (299)
|.+ .....++.++++||++|.+||++|.|||+||.|||.||++||++||+||+||+.|..||++|..+|.+|.+|||
T Consensus 197 f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk 276 (279)
T 2xhe_B 197 FSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQE 276 (279)
T ss_dssp -------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 764 22346778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh
Q 022319 273 KR 274 (299)
Q Consensus 273 ~~ 274 (299)
++
T Consensus 277 ~~ 278 (279)
T 2xhe_B 277 SA 278 (279)
T ss_dssp --
T ss_pred cc
Confidence 86
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=100.00 E-value=3.9e-32 Score=234.37 Aligned_cols=185 Identities=19% Similarity=0.350 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 022319 41 NLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRML 120 (299)
Q Consensus 41 ~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~ 120 (299)
.||.||+.|++|+..|..|+.++..|.++|.++++.+++.+...++.+|+.++.+|+++++.|+..|+.|+...
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~------ 76 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG------ 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 47899999999999999999999999999999888887776678999999999999999999999999998642
Q ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhC-CCccchhhh
Q 022319 121 SQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISG-SGKVEILEG 199 (299)
Q Consensus 121 ~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~-~~~~~~~q~ 199 (299)
...|++++++.+|+++|+++|.+|+.+|..|..+||.++.|+| .+.+|++++++++.++++ |+++.|.++
T Consensus 77 --------~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~-~i~~~~~~~~e~~~~~~~~~~~~~f~~~ 147 (196)
T 1fio_A 77 --------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQY-MIIQPEATEDEVEAAISDVGGQQIFSQA 147 (196)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTTCCHHHHHHHTSHHHHHHHHHHH
T ss_pred --------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCHHHHHHHHHcCCchhHHHHH
Confidence 1248999999999999999999999999999999999999665 456789999999988875 334444431
Q ss_pred --------hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022319 200 --------KTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQE 240 (299)
Q Consensus 200 --------~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQG 240 (299)
....++.+|++||++|.+||++|.|||+||.|||+||++||
T Consensus 148 ~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 148 LLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp TC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23478999999999999999999999999999999999998
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.96 E-value=5e-29 Score=194.79 Aligned_cols=97 Identities=25% Similarity=0.415 Sum_probs=81.6
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHH
Q 022319 200 KTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVC 278 (299)
Q Consensus 200 ~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c 278 (299)
.++++++++++||++|.+||++|.|||+||.|||.||++||++||+||+||++|.+||++|+.+|.+|.+|||++ ||+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 345899999999999999999999999999999999999999999999999999999999999999999999999 5554
Q ss_pred HHHHHHHHH--HHHHHHHhh
Q 022319 279 WVWAVGLII--LLVCLISLL 296 (299)
Q Consensus 279 ~~i~~~iIv--~lvi~~~i~ 296 (299)
|++++++|+ ++++++|+.
T Consensus 88 i~l~~~~i~~~i~~~~~~~~ 107 (109)
T 3hd7_B 88 MIIICCVILGIIIASTIGGI 107 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHHHHHhccc
Confidence 444433333 334444443
No 5
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.94 E-value=1.7e-25 Score=201.09 Aligned_cols=238 Identities=19% Similarity=0.345 Sum_probs=180.2
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022319 35 NPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSN 114 (299)
Q Consensus 35 ~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~ 114 (299)
....+.+|++||.+|++|...|..+...+.+|..++.+.+..+. ........++.++.+++.++..++..++.+....
T Consensus 35 ~~~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~ 112 (279)
T 3c98_B 35 TVDRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI 112 (279)
T ss_dssp ----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456789999999999999999999999999999998665433 3456678899999999999999999999998765
Q ss_pred hHhhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhCCCcc
Q 022319 115 MINRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGSGKV 194 (299)
Q Consensus 115 ~~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~~~~~ 194 (299)
... . ..+....+.+.+.+|+..|...|..++.+|...+..|...+++.+++ +....++..++.+.......+.+.
T Consensus 113 ~~~---~-~i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~-la~~~~~~~~~~~~~~~~~~~~~~ 187 (279)
T 3c98_B 113 EQE---E-GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR-QLEITGRTTTSEELEDMLESGNPA 187 (279)
T ss_dssp HHH---H-TTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCCCCHHHHHHHHHSCCTT
T ss_pred HHh---h-hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCccchHHHHHHHhhhhH
Confidence 431 1 23344567789999999999999999999999999998888888864 445566777776655444444444
Q ss_pred chhh------hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 195 EILE------GKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYAN 268 (299)
Q Consensus 195 ~~~q------~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~ 268 (299)
.+.. ......+.++++|+.+|..|+.+|.+|+++|.+|+.+|++||+++|+|++||+++..+|+.|..+|.+|.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~ 267 (279)
T 3c98_B 188 IFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 267 (279)
T ss_dssp SSTTTSCSCSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 1234788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh-hHHHH
Q 022319 269 QTRKKR-SWVCW 279 (299)
Q Consensus 269 ~~qk~~-k~~c~ 279 (299)
+|++++ ||.||
T Consensus 268 ~~q~~~Rkkk~i 279 (279)
T 3c98_B 268 KYQSKARRKKIM 279 (279)
T ss_dssp ------------
T ss_pred HHHHHHhCcCcC
Confidence 999999 77654
No 6
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.93 E-value=6.5e-26 Score=166.41 Aligned_cols=76 Identities=29% Similarity=0.457 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHH
Q 022319 204 DIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWVCW 279 (299)
Q Consensus 204 ~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~c~ 279 (299)
+|+++++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|..+|.+|.+|++++ ||+||
T Consensus 1 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999 66554
No 7
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.90 E-value=9.4e-24 Score=152.39 Aligned_cols=69 Identities=23% Similarity=0.397 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHH
Q 022319 209 KERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR-SWV 277 (299)
Q Consensus 209 ~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~-k~~ 277 (299)
++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|..||+.|..+|.+|.+|++++ ||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999 653
No 8
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.90 E-value=2.1e-23 Score=149.72 Aligned_cols=69 Identities=28% Similarity=0.437 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022319 204 DIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRK 272 (299)
Q Consensus 204 ~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk 272 (299)
+|.++++||++|.+||++|.||++||.||+.||.+||++||+||+||+.|..||++|..+|.+|.+|||
T Consensus 1 al~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999999999999999999999999999999999999986
No 9
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.89 E-value=2.2e-23 Score=154.96 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=70.3
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022319 200 KTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR 274 (299)
Q Consensus 200 ~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~ 274 (299)
.++.++.++++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|..+|.+|.+|++++
T Consensus 8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~ 82 (83)
T 1sfc_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 82 (83)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999986
No 10
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.89 E-value=2.2e-23 Score=177.40 Aligned_cols=147 Identities=16% Similarity=0.278 Sum_probs=103.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 022319 38 DEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMIN 117 (299)
Q Consensus 38 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~ 117 (299)
++++|+.||.+|++|+..|..|..++..|..+|.++++.+. ....++.+|+.++.+|+++++.|+.+|+.|+..+..
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~--~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~- 110 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQ--TDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQ- 110 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 56899999999999999999999999999999999887543 566889999999999999999999999999987653
Q ss_pred hhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCHHHHHHHhhCC
Q 022319 118 RMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYYNATGEEPSEDVIEKVISGS 191 (299)
Q Consensus 118 ~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~~i~~~~~tdeeie~~le~~ 191 (299)
.+ ++++++++.|+|++|+.+|+++|+++|.+|+.+|..|+.+||++++ ||+.|+||++|++++++|+++|
T Consensus 111 --~~-~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~-Rq~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 111 --EE-HSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIK-RQMEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp --TC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-------------------------
T ss_pred --hh-ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCHHHHHHHHhCc
Confidence 22 3456677889999999999999999999999999999999999998 6788999999999999999876
No 11
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.86 E-value=6.4e-22 Score=141.55 Aligned_cols=66 Identities=32% Similarity=0.545 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYAN 268 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~ 268 (299)
++|+++++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|..||++|..+|.+|.
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999999999999999999999999999999986
No 12
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.85 E-value=2.2e-21 Score=137.41 Aligned_cols=64 Identities=20% Similarity=0.427 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 206 QRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQ 269 (299)
Q Consensus 206 ~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~ 269 (299)
+++++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999999999999999999999999999999999864
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.81 E-value=6.7e-19 Score=141.17 Aligned_cols=123 Identities=16% Similarity=0.295 Sum_probs=107.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 022319 38 DEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMIN 117 (299)
Q Consensus 38 ~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~ 117 (299)
++++|+.||.+|++|+..|..|..++.+|..+|.++++.+++ .+.++++|+.++.+|+++++.|+.+|+.|+..+..
T Consensus 3 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~--~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~- 79 (127)
T 1ez3_A 3 RDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ- 79 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 357899999999999999999999999999999998876554 56799999999999999999999999999988753
Q ss_pred hhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 118 RMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKED 166 (299)
Q Consensus 118 ~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~ 166 (299)
.+ ++++++++.|+|++|+.+|+++|+++|.+|+.+|..|+..++.+
T Consensus 80 --~~-~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 80 --EE-GLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp --HH-TTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --hc-ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 46677888999999999999999999999999987666555543
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.6e-08 Score=80.84 Aligned_cols=113 Identities=18% Similarity=0.219 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhh
Q 022319 43 TQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQ 122 (299)
Q Consensus 43 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~ 122 (299)
++|-..++.|...|..|+.++..|+++...+. ++.|..+++++|+.+...++.+++.+...|+.|..-.
T Consensus 10 ~ef~~l~~~is~~I~~In~~vs~l~r~v~~LG---T~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~-------- 78 (130)
T 2dnx_A 10 RDFSSIIQTCSGNIQRISQATAQIKNLMSQLG---TKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLP-------- 78 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 56888999999999999999999999988643 4667899999999999999999999999999997631
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 123 AFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDL 167 (299)
Q Consensus 123 ~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~ 167 (299)
.....++.|.++.+...|.+.|..+++.|+.+|..+..+.|.-+
T Consensus 79 -~~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~ 122 (130)
T 2dnx_A 79 -LPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESI 122 (130)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 01112356889999999999999999999999988876665544
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.28 E-value=0.0075 Score=46.19 Aligned_cols=82 Identities=10% Similarity=0.105 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHH
Q 022319 204 DIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR--SWVCWVW 281 (299)
Q Consensus 204 ~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~--k~~c~~i 281 (299)
...++..=++.|.+|-.-..+|+.|..+=+.+|..=...+++...||+.+...+.+|.+.=++ ++|+. -.+|+++
T Consensus 19 R~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~---~rkk~~i~l~~~~i 95 (109)
T 3hd7_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK---ARRKKIMIIICCVI 95 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcceehHHHHHH
Confidence 344555556677777777888999999999999998999999999999999999999876443 34444 3344444
Q ss_pred HHHHHHH
Q 022319 282 AVGLIIL 288 (299)
Q Consensus 282 ~~~iIv~ 288 (299)
+++++.+
T Consensus 96 ~~~i~~~ 102 (109)
T 3hd7_B 96 LGIIIAS 102 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 16
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.15 E-value=0.014 Score=43.10 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR 274 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~ 274 (299)
..+.++...+.|+..++.+==.-|-+.||-||.++.-.++-.. .|..--..|++-+++.
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~---~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA---GASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4578888999999999998888899999999888776654433 3333333444444443
No 17
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=96.99 E-value=0.01 Score=44.38 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhccCCCh
Q 022319 51 AIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRME-SDVASILRKAKIVKARLESLDKSNMINRMLSQAFKEGSS 129 (299)
Q Consensus 51 ~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~-~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~~~~s~ 129 (299)
+...-|..+..+|..|+++..++ .+..|..+++..|+ .++..++.+.+.+. ... .+
T Consensus 7 d~~~li~t~s~niq~l~k~~~ql---GTkrD~~~LR~~l~~~l~~~~~~L~k~~~--------~l~---~l--------- 63 (97)
T 1hs7_A 7 ELSNLIETFAEQSRVLEKECTKI---GSKRDSKELRYKIETELIPNCTSVRDKIE--------SNI---LI--------- 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---TSSSCCHHHHHHHHHTHHHHHHHHHHHHH--------HST---HH---------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh---CCCcchHHHHHHHHHHHHHHHHHHHHHHH--------Hhc---cc---------
Confidence 44455666666677888888764 34567889999999 89988888777765 110 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 130 VDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYK 164 (299)
Q Consensus 130 ~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k 164 (299)
.+.+.|.+.|..+.+.|+.+|..|..+-+
T Consensus 64 ------~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~ 92 (97)
T 1hs7_A 64 ------HQNGKLSADFKNLKTKYQSLQQSYNQRKS 92 (97)
T ss_dssp ------HHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 14567889999999999999987765543
No 18
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.31 E-value=0.045 Score=37.76 Aligned_cols=55 Identities=20% Similarity=0.273 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 212 HEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY 266 (299)
Q Consensus 212 ~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~k 266 (299)
.+.+..|..+|..|+.|-.+|+.=|..|..+||+|+..++.+...+..+.+.+.+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999999999999999999999999999999999998887754
No 19
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.98 E-value=0.031 Score=38.48 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 209 KERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY 266 (299)
Q Consensus 209 ~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~k 266 (299)
++-.+.+..|..++..|++|-.+|+.=|..|..+||+++..++.+...+..+.+.+.+
T Consensus 5 ~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 5 QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999999999999999999999988877643
No 20
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=95.96 E-value=0.034 Score=40.20 Aligned_cols=62 Identities=11% Similarity=0.141 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 208 SKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQ 269 (299)
Q Consensus 208 i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~ 269 (299)
+++-.+.+..|..+|..|++|-.+|+.=|..|.++||.++..++.+...+..+.+.+.+-.+
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446678899999999999999999999999999999999999999999999998876444
No 21
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=95.89 E-value=0.077 Score=38.74 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 210 ERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY 266 (299)
Q Consensus 210 ~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~k 266 (299)
+=.+.+..|...|..|+.|-.+|+.=|..|.++||+|+..++.+...+..+.+.+.+
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999988887754
No 22
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.45 E-value=0.11 Score=34.28 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 221 SLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLY 265 (299)
Q Consensus 221 sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~ 265 (299)
-+.|-.++=..-......|||.|++|+.++.....++..|.+.|.
T Consensus 8 l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 8 LAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 344555555666677889999999999999999999999998874
No 23
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.74 E-value=0.13 Score=37.58 Aligned_cols=55 Identities=13% Similarity=0.253 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 212 HEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY 266 (299)
Q Consensus 212 ~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~k 266 (299)
.+.+..|...+..|+.|=.+|+.=|..|.++||+|+..++.+...+..+++.+.+
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999988877754
No 24
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.28 Score=33.60 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 212 HEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLY 265 (299)
Q Consensus 212 ~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~ 265 (299)
...+..|...+.-|+.|=.+|+.=|..|-++||+|+..++.+...+..++.-|.
T Consensus 9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445778999999999999999999999999999999999999999998887765
No 25
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.12 E-value=0.46 Score=33.12 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=32.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 234 VLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQT 270 (299)
Q Consensus 234 ~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~ 270 (299)
.+...|||.|+|||.|++.+..+...|.+.|..=..+
T Consensus 33 ~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 33 GMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999999998765544
No 26
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=93.83 E-value=0.0074 Score=46.97 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 022319 214 AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVA 251 (299)
Q Consensus 214 eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~ 251 (299)
.|.++...+.|+..++.+==.-|-+.||-||.++.-.+
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe 71 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRAD 71 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45667777888888888777778889998887776544
No 27
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=93.64 E-value=1.2 Score=31.80 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 215 VMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY 266 (299)
Q Consensus 215 I~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~k 266 (299)
+++-.+-+.|-.++=.........|||.|++|+.++..+..++..|.+.|..
T Consensus 25 ~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 25 TRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 3444444555566666677788999999999999999999999999988753
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=90.88 E-value=1.1 Score=32.31 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 223 TKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSL 264 (299)
Q Consensus 223 ~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL 264 (299)
.+-.+.=..=..+...|||.|+|||.+++....+...|.+.|
T Consensus 37 ~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 37 EESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555778899999999999999998888777655
No 29
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=90.28 E-value=4.8 Score=31.38 Aligned_cols=95 Identities=14% Similarity=0.153 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhc
Q 022319 45 FFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAF 124 (299)
Q Consensus 45 f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~ 124 (299)
||...++|...|..++.....-..+.... .++ -+.+++.+..++......|...|.+|.+.+.....-|...
T Consensus 29 F~~Vk~EVq~sl~~l~~l~~~w~~l~~~~---~~~-----s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF 100 (130)
T 4dnd_A 29 FFVVRGEVQKAVNTARGLYQRWCELLQES---AAV-----GREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc
Confidence 99999999999998877776655544321 111 1245556666777777777888888887765432212112
Q ss_pred cCCChHHHHHHHHHHHHHHHHHH
Q 022319 125 KEGSSVDRTRISVTNGLRVKLRD 147 (299)
Q Consensus 125 ~~~s~~~rir~~q~~~L~~~f~~ 147 (299)
+-+..+..-|+..+..+.+++.+
T Consensus 101 ~l~~~Ei~~Rr~fV~~~r~~I~~ 123 (130)
T 4dnd_A 101 KLPAGDLQERKVFVERMREAVQE 123 (130)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 21222334455555555544443
No 30
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=71.29 E-value=27 Score=25.37 Aligned_cols=73 Identities=8% Similarity=-0.003 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 39 EENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKS--THSGKVLRGLRDRMESDVASILRKAKIVKARLESLD 111 (299)
Q Consensus 39 ~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~--~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~ 111 (299)
...+...+.....+..+|..-...+..+...-..+.. .+++.+...++.+++.+...-..+...+..+-+.|.
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le 109 (119)
T 3uun_A 35 VEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLH 109 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888888888877776542 223333445555555555444444444444333333
No 31
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=70.60 E-value=21 Score=23.97 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 216 MDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLY 265 (299)
Q Consensus 216 ~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~ 265 (299)
.+-.+-+.|--++=.+...-...|+|.|.+....+..+..++..|.+-|.
T Consensus 12 ~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 12 ERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 33344455555666666667889999999999999999999999987775
No 32
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=69.86 E-value=29 Score=25.21 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=45.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 39 EENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKST--HSGKVLRGLRDRMESDVASILRKAKIVKARLESLD 111 (299)
Q Consensus 39 ~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~--~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~ 111 (299)
...+..-+.....+..+|..-...+..+...-..+... +++.+...++.+++.+...-..+...+..+-..|.
T Consensus 35 ~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~ 109 (118)
T 3uul_A 35 VEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLH 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888877765432 23334445566555555444444444444434433
No 33
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=62.99 E-value=31 Score=25.34 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHH
Q 022319 42 LTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASIL 97 (299)
Q Consensus 42 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~ 97 (299)
-......+.++..+|.+-...-+-|.+++.-+...+...+...+..+|+.....+.
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid 72 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIE 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHH
Confidence 34688899999999998888888888888765544444444555555555544333
No 34
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=60.93 E-value=36 Score=23.11 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 207 RSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQ 269 (299)
Q Consensus 207 ~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~ 269 (299)
++..=...|..|-.=..+|+.|..+=+.+|..=..-++....||+.+...+.+|...-.++++
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk 69 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444455667777777888999999999999888888999999999999999998877665544
No 35
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=60.78 E-value=45 Score=24.23 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVAN 252 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~ 252 (299)
..|.+|...+.|+..++.+==.-|-+.||-||.++.-.+.
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4577788888899888888888899999999888766544
No 36
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=60.64 E-value=1.1e+02 Score=28.76 Aligned_cols=31 Identities=6% Similarity=0.235 Sum_probs=23.1
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 022319 41 NLTQFFQEVDA-IKGEMEEITNLLLDLQNLNE 71 (299)
Q Consensus 41 ~~~~f~~~v~~-I~~~I~~i~~~i~~L~~l~~ 71 (299)
.+..||...+. |+.+|..++..+++|.....
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts 117 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTST 117 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhh
Confidence 35567666644 89999999999988876554
No 37
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=58.98 E-value=36 Score=22.52 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVAN 252 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~ 252 (299)
..|..+...+.|+..++.+==.-|-+.||-||.++.-.+.
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~ 43 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4577888999999999999888999999999888766544
No 38
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=58.81 E-value=47 Score=23.81 Aligned_cols=22 Identities=9% Similarity=0.287 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022319 203 KDIQRSKERHEAVMDIQRSLTK 224 (299)
Q Consensus 203 ~~l~~i~~R~~eI~~LE~sI~E 224 (299)
..++.+-+|.+.|..|+..-.+
T Consensus 23 ~NI~kvL~RgekL~~L~~kt~~ 44 (91)
T 3hd7_A 23 VNVDKVLERDQKLSELDDRADA 44 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHH
Confidence 4444555555555544444333
No 39
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=56.92 E-value=11 Score=28.74 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 022319 275 SWVCWVWAVGLIILLVCLI 293 (299)
Q Consensus 275 k~~c~~i~~~iIv~lvi~~ 293 (299)
|+++++++++++++++|++
T Consensus 97 K~~iii~~iv~iii~iIi~ 115 (119)
T 2kog_A 97 KMMIILGVICAIILIIIIV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4444433333333333333
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.46 E-value=1.2e+02 Score=27.79 Aligned_cols=29 Identities=7% Similarity=0.181 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022319 45 FFQEVDAIKGEMEEITNLLLDLQNLNEGT 73 (299)
Q Consensus 45 f~~~v~~I~~~I~~i~~~i~~L~~l~~~~ 73 (299)
....-..+...|.+|.+++..+.+.+..+
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~ 86 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDS 86 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 33444678888888888888888877653
No 41
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.71 E-value=41 Score=23.54 Aligned_cols=47 Identities=6% Similarity=0.030 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 022319 214 AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGG 260 (299)
Q Consensus 214 eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a 260 (299)
-|..||..+.-.-+...+|+..|..|...||+....+..-...+...
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788999999999999999999999999999999887776666543
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.63 E-value=1.5e+02 Score=28.45 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 136 SVTNGLRVKLRDLMNDFQSLRGKV 159 (299)
Q Consensus 136 ~q~~~L~~~f~~~~~~f~~~Q~~~ 159 (299)
.++..|...+.+...+-++++...
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666777667777766544
No 43
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=49.56 E-value=23 Score=20.45 Aligned_cols=8 Identities=13% Similarity=-0.118 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 022319 275 SWVCWVWA 282 (299)
Q Consensus 275 k~~c~~i~ 282 (299)
|++.|..+
T Consensus 11 KrLlivVv 18 (35)
T 1spf_A 11 KRLLVVVV 18 (35)
T ss_dssp HHHHHHHH
T ss_pred heEEEEEe
Confidence 44433333
No 44
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=49.16 E-value=54 Score=21.54 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 022319 214 AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVAN 252 (299)
Q Consensus 214 eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~ 252 (299)
.|.++...+.|+..++.+==.-|-+.||-||.+..-.++
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467888899999999988888889999999887765543
No 45
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=46.08 E-value=1.3e+02 Score=25.08 Aligned_cols=219 Identities=10% Similarity=0.076 Sum_probs=104.5
Q ss_pred cchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 022319 39 EENLT---QFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNM 115 (299)
Q Consensus 39 ~~~~~---~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~ 115 (299)
+.++. ..-..+..|...+..+......+..... ...........+...+..+...+......+....+....-..
T Consensus 43 ~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~ 120 (279)
T 3c98_B 43 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNR 120 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 44444 4566677777777777766655432221 111122334556667777777777777777665555443211
Q ss_pred HhhhhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------ccCCCCCCHHHHH
Q 022319 116 INRMLSQAFKEGSSVDRTRISVTNGLRVKLRDLMNDFQSLRGKVLSDYKEDLKRRYY----------NATGEEPSEDVIE 185 (299)
Q Consensus 116 ~~~~~~~~~~~~s~~~rir~~q~~~L~~~f~~~~~~f~~~Q~~~~~~~k~~~~rr~~----------~i~~~~~tdeeie 185 (299)
....+. .. ......-.........+|.+.-..|..+- ....+....+-.. .+.+ .+.....
T Consensus 121 ~~~~i~--~~--~~qtn~La~n~a~~~a~~~~~~~~~~~vv---a~evr~la~~~~~~~~~~~~~~~~~~~--~~~~~~~ 191 (279)
T 3c98_B 121 SSADLR--IR--KTQHSTLSRKFVEVMSEYNATQSDYRERC---KGRIQRQLEITGRTTTSEELEDMLESG--NPAIFAS 191 (279)
T ss_dssp CSHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCCCCHHHHHHHHHSC--CTTSSTT
T ss_pred chHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccCccchHHHHHHHhh--hhHHHHH
Confidence 000000 00 00111122233446677777777777442 2233333322100 0000 0100011
Q ss_pred HHhhCCCccchhh--hhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022319 186 KVISGSGKVEILE--GKTEKDIQRSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNS 263 (299)
Q Consensus 186 ~~le~~~~~~~~q--~~~~~~l~~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~e 263 (299)
.+. .+. ...-+ .........+..=...|..|...+.++..+..+-+..+.+=...|..+-.+|+.+...+.+|...
T Consensus 192 ~~~-~~~-~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~ 269 (279)
T 3c98_B 192 GII-MDS-SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269 (279)
T ss_dssp TSC-SCS-SSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111 11111 11223444455556677777788888888999999999888888888999999999999999887
Q ss_pred HHHHHHH
Q 022319 264 LYYANQT 270 (299)
Q Consensus 264 L~kA~~~ 270 (299)
-.+++++
T Consensus 270 q~~~Rkk 276 (279)
T 3c98_B 270 QSKARRK 276 (279)
T ss_dssp -------
T ss_pred HHHHhCc
Confidence 7776664
No 46
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=43.70 E-value=85 Score=23.77 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHH
Q 022319 52 IKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRK 99 (299)
Q Consensus 52 I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~ 99 (299)
.+.+|..+++.++.++..........+..-.....++++.++.+|.++
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~l 55 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARL 55 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776665555555554556666777776666544
No 47
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=43.68 E-value=54 Score=22.46 Aligned_cols=38 Identities=13% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 022319 215 VMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVAN 252 (299)
Q Consensus 215 I~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~ 252 (299)
|.++...+.|+..++.+==.-|-+.||-||.+..-.+.
T Consensus 10 l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 10 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55677778888888887777888899988877665544
No 48
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=43.13 E-value=72 Score=21.31 Aligned_cols=62 Identities=10% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR 274 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~ 274 (299)
.+|..=++.|..|..-..+|+.|..+=+.++..=..-++....+|+.+...+.+|...=+++
T Consensus 5 ~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 5 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666666666666666666666666666666666666666666666666554443
No 49
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=41.20 E-value=51 Score=22.98 Aligned_cols=51 Identities=25% Similarity=0.550 Sum_probs=33.6
Q ss_pred hhhhhhHHhhHhhhhhhhhcccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022319 7 KSFLSYVELKKQAQKDLEADLDIERGQLNPRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEGTKS 75 (299)
Q Consensus 7 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~ 75 (299)
=||+.|.--|.|++ |-|.+ ++ -.|+. .|...+.++...++.|.++.+..+.
T Consensus 30 iSl~DyImiKRGS~-------DmPe~-L~-------~~~~~---QideeV~~LKe~IdaLNK~Kke~lv 80 (83)
T 1zke_A 30 LSLGDFIEIKRGSM-------DMPKG-VN-------EAFFT---QLSEEVERLKELINALNKIKKGLLV 80 (83)
T ss_dssp CCHHHHHHHHTTSS-------CCCTT-CC-------GGGHH---HHHHHHHHHHHHHHHHHHHHGGGCS
T ss_pred hhhHHHhheeccCc-------cCccc-cC-------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36677777777777 44443 11 13454 5677788888888888888877553
No 50
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.02 E-value=62 Score=19.83 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022319 43 TQFFQEVDAIKGEMEEITNLLLDLQNLNEG 72 (299)
Q Consensus 43 ~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~ 72 (299)
++.++.++.|...|.+.+..|..++.....
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888888888877766654
No 51
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=39.60 E-value=84 Score=21.06 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 022319 214 AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQTRKKR 274 (299)
Q Consensus 214 eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk~~ 274 (299)
+|..=++.|..|..-..+|+.|..+=+.++..=..-++....+|+.+...+.+|...=+++
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (69)
T 3b5n_B 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666666666666666666666666555444
No 52
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=36.85 E-value=1.9e+02 Score=24.23 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022319 93 VASILRKAKIVKARLESLDKS 113 (299)
Q Consensus 93 ~~~i~~~~~~ik~~lk~l~~~ 113 (299)
...|++.+..||.-|..++.-
T Consensus 121 L~tIKeIAsaIKklLDAvn~v 141 (213)
T 3ajm_A 121 LQTIKDIASAIKELLDTVNNV 141 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444666677777777777654
No 53
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=36.57 E-value=1.8e+02 Score=24.05 Aligned_cols=90 Identities=7% Similarity=0.061 Sum_probs=55.4
Q ss_pred cccccccCCCCCCcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022319 26 DLDIERGQLNPRDEENLT-QFFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVK 104 (299)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~-~f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik 104 (299)
|.-..+||++|++...+- .=|..+-..-..+......+..|.+.-..+-......+...+...++..+..+.++-..+.
T Consensus 4 ~~~~LtgC~~~~~e~~~y~~~leka~~~Ek~~~~~qkkL~~LEkk~q~LY~qI~~~~~~~v~~~adqa~~nv~eRek~l~ 83 (199)
T 2ap3_A 4 GIQRPTSTTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKAVKDLIKNADDRLKEFE 83 (199)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTGGGCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 333456776543222222 3346666667777777788888777665533222234456677778888888888777777
Q ss_pred HHHHHHHHhhh
Q 022319 105 ARLESLDKSNM 115 (299)
Q Consensus 105 ~~lk~l~~~~~ 115 (299)
.--+.|...-.
T Consensus 84 kEk~si~~s~k 94 (199)
T 2ap3_A 84 KEEDAIKKSEQ 94 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 54
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=36.19 E-value=1.3e+02 Score=24.69 Aligned_cols=25 Identities=12% Similarity=0.022 Sum_probs=9.4
Q ss_pred hhhc----ccccccCCCCCCcchHHHHHH
Q 022319 23 LEAD----LDIERGQLNPRDEENLTQFFQ 47 (299)
Q Consensus 23 ~e~~----~~~~~~~~~~~~~~~~~~f~~ 47 (299)
+||| +++|.+..+|..+-.+|.-++
T Consensus 8 ~~~~~p~~~~~~~~~~~~~~~~~LP~~L~ 36 (192)
T 2p22_C 8 AEMDVVPSPGLPEKVNEKSKNIPLPEGIN 36 (192)
T ss_dssp HHHHHSCCCCCC------CCCCCCSSGGG
T ss_pred hccCCCCCCCCCCCCCCcccCCCCCHHHH
Confidence 4565 334444445555555555443
No 55
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=34.91 E-value=1.6e+02 Score=22.96 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHH
Q 022319 45 FFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKA 100 (299)
Q Consensus 45 f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~ 100 (299)
.-..++.+=..++.++..|+.|++=.-.....|.+.....+...|+....+++.+.
T Consensus 19 L~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~ 74 (141)
T 3okq_A 19 LGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQ 74 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777778888887776665677777666666666666665555443
No 56
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=34.83 E-value=2.8e+02 Score=25.62 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=31.1
Q ss_pred hhcccccccCCCCCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 022319 24 EADLDIERGQLNPRDEENLTQFFQEVDA-IKGEMEEITNLLLDLQNLNEG 72 (299)
Q Consensus 24 e~~~~~~~~~~~~~~~~~~~~f~~~v~~-I~~~I~~i~~~i~~L~~l~~~ 72 (299)
++|.==||+|+ +..|+...+. +...|..++..+++|+.+...
T Consensus 14 ~~G~~CPT~C~-------i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~ 56 (409)
T 1m1j_C 14 RFGSYCPTTCG-------IADFFNKYRLTTDGELLEIEGLLQQATNSTGS 56 (409)
T ss_dssp GGCCEEECTTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCCCccc-------HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence 45555566664 6778877776 888888888888888877664
No 57
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=34.33 E-value=1.3e+02 Score=21.70 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 42 LTQFFQEVDAIKGEMEEITNLLLDLQNLNE 71 (299)
Q Consensus 42 ~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~ 71 (299)
.+=|...|.+-...|...+..|++++....
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~ 36 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLA 36 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344568889999999999999999988764
No 58
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=34.23 E-value=21 Score=22.26 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.4
Q ss_pred HHHHhhcc
Q 022319 291 CLISLLTS 298 (299)
Q Consensus 291 i~~~i~~~ 298 (299)
++++++++
T Consensus 29 l~~~~~~R 36 (44)
T 2jwa_A 29 VVFGILIK 36 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhee
Confidence 33444444
No 59
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=32.60 E-value=1.1e+02 Score=20.25 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 022319 213 EAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGG 260 (299)
Q Consensus 213 ~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a 260 (299)
+.|..|-.=..+|+.|..+=+.+|..=..-+++...||+.+...+.+|
T Consensus 16 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 16 ADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555444
No 60
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=32.12 E-value=22 Score=25.18 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022319 241 EKMDDIEENVANAGNFISGGTNSLYYANQTRK 272 (299)
Q Consensus 241 e~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~qk 272 (299)
.|.|.++..++...+.+....+=|..|++--+
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr 44 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKCKKPDL 44 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSCCCCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 35678888888888999988888887654333
No 61
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=30.94 E-value=1.3e+02 Score=20.56 Aligned_cols=62 Identities=6% Similarity=0.056 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 207 RSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYAN 268 (299)
Q Consensus 207 ~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~ 268 (299)
++..=.+.|..|-.=..+|+.|..+=+.+|..=..-++....||+.+...+.+|...-.+++
T Consensus 11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~r 72 (77)
T 1jth_B 11 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333445555555566666666666666666666666666666666666666666554443
No 62
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=29.53 E-value=1.6e+02 Score=21.22 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhhhc
Q 022319 45 FFQEVDAIKGEMEEITNLLLDLQNLNEGTKSTHSGKVLRGLRDRMESDVASILRKAKIVKARLESLDKSNMINRMLSQAF 124 (299)
Q Consensus 45 f~~~v~~I~~~I~~i~~~i~~L~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ik~~lk~l~~~~~~~~~~~~~~ 124 (299)
|.....++...|..+...+.. . ...++ .....++...+.++ ...|.+|.+.+...+ ..
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~------~-~~~~~----~~~~~El~~~l~el-------~e~l~DL~~SI~i~e----~~ 65 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITR------H-NTAGD----DDQEEEIQDILKDV-------EETIVDLDRSIIVMK----RD 65 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------T-CCC------CTTHHHHHHHHHHH-------HHHHHHHHHHHHHHH----TS
T ss_pred HHHHHHHHHHHHHHHHHHHHH------c-cCCCC----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH----cC
Confidence 888888999999888777443 1 11122 23344444444444 444444444433211 01
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 125 KEGSSVDRTRISVTNGLRVKLRDLMNDF 152 (299)
Q Consensus 125 ~~~s~~~rir~~q~~~L~~~f~~~~~~f 152 (299)
...+..-|+..+..+..++..+-..+
T Consensus 66 --~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 66 --ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp --TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233456666666776665554444
No 63
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.34 E-value=85 Score=18.66 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHH
Q 022319 209 KERHEAVMDIQRSLTKL----HQVFLD 231 (299)
Q Consensus 209 ~~R~~eI~~LE~sI~EL----~~lF~d 231 (299)
.+-...|.+++..+..| |+||.+
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555677777666655 677765
No 64
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.27 E-value=1.2e+02 Score=18.89 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 135 ISVTNGLRVKLRDLMNDFQSLRGK 158 (299)
Q Consensus 135 ~~q~~~L~~~f~~~~~~f~~~Q~~ 158 (299)
.+.++.|..+|..++.+|...|..
T Consensus 11 e~~ld~LqTr~ArLlae~~ssq~K 34 (46)
T 3swy_A 11 GSSLDTLQTRFARLLAEYNATQMK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999998753
No 65
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=25.23 E-value=15 Score=28.07 Aligned_cols=8 Identities=0% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 022319 276 WVCWVWAV 283 (299)
Q Consensus 276 ~~c~~i~~ 283 (299)
|.++++++
T Consensus 107 ~~~i~~~~ 114 (130)
T 3fym_A 107 QLLVIMGI 114 (130)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33444333
No 66
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=24.21 E-value=1.8e+02 Score=20.06 Aligned_cols=39 Identities=8% Similarity=0.179 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 022319 214 AVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVAN 252 (299)
Q Consensus 214 eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~ 252 (299)
.|..+...+.|+..++.+==.-|-+.||-||.++.-.+.
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 466777888888888888888888999999888766543
No 67
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.02 E-value=1.6e+02 Score=20.40 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 135 ISVTNGLRVKLRDLMNDFQSLRGK 158 (299)
Q Consensus 135 ~~q~~~L~~~f~~~~~~f~~~Q~~ 158 (299)
.+.++.|..+|..++.+|...|..
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~K 36 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQK 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999998753
No 68
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=23.65 E-value=95 Score=18.33 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 022319 276 WVCWVWAVGLII 287 (299)
Q Consensus 276 ~~c~~i~~~iIv 287 (299)
+++...+..+++
T Consensus 14 ~I~~~vv~Gv~l 25 (41)
T 2k9y_A 14 AVIGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEeehhHHHHH
Confidence 334444433333
No 69
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=23.62 E-value=3.2e+02 Score=22.70 Aligned_cols=49 Identities=16% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 022319 211 RHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISG 259 (299)
Q Consensus 211 R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~ 259 (299)
-...+..|...+.++..++.+++..+.+|...++.|-.++.....-++.
T Consensus 145 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 193 (227)
T 1qu7_A 145 AGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 193 (227)
T ss_dssp HTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888888888888888888888777665544443
No 70
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=23.38 E-value=1.9e+02 Score=20.02 Aligned_cols=56 Identities=5% Similarity=0.090 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022319 207 RSKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTN 262 (299)
Q Consensus 207 ~i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~ 262 (299)
++..=.+.|..|-.=..+|+.|..+=+.+|..=..-++....||+.+...+.+|.+
T Consensus 22 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 22 EIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555566666666666666666666666666666666666666654
No 71
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=23.22 E-value=2.5e+02 Score=21.33 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 022319 222 LTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGT 261 (299)
Q Consensus 222 I~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~ 261 (299)
..-|...|.++ -.+|-+.+|+|-..+..+..-|+.=.
T Consensus 59 y~~L~~q~~~i---aaeQke~~d~ir~tL~~tm~miQ~LQ 95 (123)
T 4aj5_K 59 YQTLYARFKPV---AVEQKESKSRICATVKKTMNMIQKLQ 95 (123)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666644 46889999999999988877766543
No 72
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.12 E-value=4.7e+02 Score=24.52 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=27.1
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022319 36 PRDEENLTQFFQEVDAIKGEMEEITNLLLDLQNLNEG 72 (299)
Q Consensus 36 ~~~~~~~~~f~~~v~~I~~~I~~i~~~i~~L~~l~~~ 72 (299)
|++=.........=..+...|.+|++++.++.+.+..
T Consensus 47 PSGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~ 83 (491)
T 1m1j_A 47 PSGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKT 83 (491)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred CCccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcch
Confidence 4333444556666778999999999999998888764
No 73
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=21.97 E-value=2.1e+02 Score=20.01 Aligned_cols=61 Identities=18% Similarity=0.154 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 208 SKERHEAVMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYYANQT 270 (299)
Q Consensus 208 i~~R~~eI~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~kA~~~ 270 (299)
++...+.|..|-.+...+.-..+-+..-|..+|.+ .|--|...|..+.++....|.+|+..
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554 46677788888888888888887653
No 74
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=20.72 E-value=1.5e+02 Score=17.76 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 022319 216 MDIQRSLTKLHQVFLDMAVLVETQEEKMDDI 246 (299)
Q Consensus 216 ~~LE~sI~EL~~lF~dla~LV~eQGe~Id~I 246 (299)
..+.+++...+.-+.-+...|.+||..+...
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~L 32 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTL 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567788888888888999999999888764
No 75
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=20.63 E-value=2.2e+02 Score=19.72 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022319 215 VMDIQRSLTKLHQVFLDMAVLVETQEEKMDDIEENVANAGNFISGGTNSLYY 266 (299)
Q Consensus 215 I~~LE~sI~EL~~lF~dla~LV~eQGe~Id~Ie~nv~~a~~~ve~a~~eL~k 266 (299)
|.+-.+-+.|=-++=.+...=...|.|.|.+....+..+..++..+.+-|..
T Consensus 21 L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~ 72 (81)
T 2nps_C 21 LEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTG 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 4444444555555556666667889999999999999999999999988765
No 76
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=20.43 E-value=70 Score=20.49 Aligned_cols=6 Identities=33% Similarity=0.949 Sum_probs=2.4
Q ss_pred hHHHHH
Q 022319 275 SWVCWV 280 (299)
Q Consensus 275 k~~c~~ 280 (299)
||-++.
T Consensus 33 k~gt~~ 38 (51)
T 1m56_D 33 TWAAVV 38 (51)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
Done!