Query 022320
Match_columns 299
No_of_seqs 201 out of 1552
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 02:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 3.4E-48 7.4E-53 348.7 30.4 246 46-298 63-330 (365)
2 PTZ00224 protein phosphatase 2 100.0 8.2E-45 1.8E-49 327.9 29.1 250 32-298 6-271 (381)
3 COG0631 PTC1 Serine/threonine 100.0 6E-45 1.3E-49 316.1 25.0 239 46-298 6-252 (262)
4 KOG0697 Protein phosphatase 1B 100.0 4.3E-45 9.2E-50 303.1 20.4 259 33-298 7-291 (379)
5 KOG0698 Serine/threonine prote 100.0 1.2E-42 2.7E-47 311.3 27.3 249 48-299 39-305 (330)
6 PF00481 PP2C: Protein phospha 100.0 1.5E-43 3.2E-48 307.8 15.2 236 49-290 1-254 (254)
7 PRK14559 putative protein seri 100.0 7.1E-40 1.5E-44 311.2 25.7 240 47-298 374-635 (645)
8 cd00143 PP2Cc Serine/threonine 100.0 5.5E-39 1.2E-43 278.6 26.1 240 49-297 2-254 (254)
9 smart00332 PP2Cc Serine/threon 100.0 2.3E-38 5E-43 275.1 26.7 239 47-295 5-255 (255)
10 KOG0699 Serine/threonine prote 100.0 1.6E-37 3.6E-42 266.5 19.6 157 138-299 327-504 (542)
11 KOG0700 Protein phosphatase 2C 100.0 3.8E-32 8.1E-37 238.7 16.9 221 62-285 84-378 (390)
12 KOG1379 Serine/threonine prote 99.9 3.8E-25 8.3E-30 188.5 21.8 198 61-297 89-330 (330)
13 KOG1323 Serine/threonine phosp 99.9 5.7E-25 1.2E-29 187.7 17.7 222 76-298 141-487 (493)
14 KOG0618 Serine/threonine phosp 99.9 7.3E-23 1.6E-27 195.3 15.8 241 48-298 522-772 (1081)
15 PF13672 PP2C_2: Protein phosp 99.8 8.2E-21 1.8E-25 160.6 12.3 178 53-266 3-193 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 4.6E-18 1E-22 141.6 21.9 184 48-282 4-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 5.4E-16 1.2E-20 152.7 20.6 187 61-297 565-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.6 4.4E-14 9.6E-19 117.4 19.7 176 77-298 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.8 2.6E-06 5.6E-11 78.1 21.5 203 48-298 149-366 (367)
20 PRK10693 response regulator of 81.4 13 0.00029 33.0 9.3 102 63-171 150-257 (303)
21 COG2168 DsrH Uncharacterized c 44.7 14 0.00031 26.6 1.5 51 236-291 22-72 (96)
22 PF09436 DUF2016: Domain of un 42.5 16 0.00034 25.0 1.3 14 238-252 26-39 (72)
23 KOG0641 WD40 repeat protein [G 33.3 2.4E+02 0.0053 24.1 7.2 39 143-181 232-273 (350)
24 COG3700 AphA Acid phosphatase 30.7 88 0.0019 25.6 4.1 46 240-285 71-130 (237)
25 PF06972 DUF1296: Protein of u 30.6 61 0.0013 21.2 2.6 25 255-279 19-44 (60)
26 cd01457 vWA_ORF176_type VWA OR 25.6 2.4E+02 0.0051 23.0 6.1 12 241-252 109-120 (199)
27 cd01482 vWA_collagen_alphaI-XI 23.3 2.1E+02 0.0045 22.4 5.2 12 241-252 105-116 (164)
28 PF01436 NHL: NHL repeat; Int 22.1 1.4E+02 0.0031 15.8 3.9 18 151-168 11-28 (28)
29 TIGR02276 beta_rpt_yvtn 40-res 21.0 1.7E+02 0.0038 16.5 3.4 19 152-170 3-21 (42)
30 COG5518 Bacteriophage capsid p 20.3 88 0.0019 28.6 2.5 133 150-298 190-330 (492)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=3.4e-48 Score=348.74 Aligned_cols=246 Identities=35% Similarity=0.562 Sum_probs=208.4
Q ss_pred CceeEEEEeeccCCCCCCCceEEEEeecc--------CCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCccHHH
Q 022320 46 NKVSHGYHLVEGQSGHDMEDYLVAEYRKK--------KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKA 117 (299)
Q Consensus 46 ~~~~~~~~s~~G~r~~~neD~~~~~~~~~--------~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~ 117 (299)
.-++++.++++|.|+ .|||++++..... ......||+|||||||+.+++++++.+.+.+.+...+...+..
T Consensus 63 ~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 347999999999876 9999987543210 1223579999999999999999999999998876555556788
Q ss_pred HHHHHHHHHHHHHHhhcccc-CCCCcceEEEEEEeCCeEEEEEccCceeEEEecCcccccccCCCChh--HHHHHHHcCC
Q 022320 118 AITNAYRSTDQFILENSMQL-GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGG 194 (299)
Q Consensus 118 ~l~~~~~~~~~~l~~~~~~~-~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~rl~~~gg 194 (299)
.|.++|.++++.+.+..... ...+|||++++++.++++|++|+||||+|+++++++++||+||++.+ |+.||.+.||
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 89999999999987654322 34589999999999999999999999999999999999999999987 8899999999
Q ss_pred eeecCCCCcCccCCcccccccccCcCccC-------ccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHHHHHhh---
Q 022320 195 FVTSLPGDVPRVNGQLAVARAFGDQSLKA-------HLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQEAVDLV--- 264 (299)
Q Consensus 195 ~~~~~~~~~~~~~~~~~ltr~lG~~~~~~-------~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~i~~i~--- 264 (299)
.+.. .+.++.+.+||+||+..+|. .+.++|++..+++.++|+||||||||||| +++++++.+++
T Consensus 222 ~v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwd-vls~ee~v~~i~~~ 295 (365)
T PLN03145 222 YVYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWD-VFRSQNAVDFARRR 295 (365)
T ss_pred ceec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCcccc-CcCHHHHHHHHHHH
Confidence 8863 36677778999999976652 35789999999999988889999999999 99999976554
Q ss_pred -cCCCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022320 265 -KPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 298 (299)
Q Consensus 265 -~~~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~ 298 (299)
....+|+++|+.|++.|+.+++.||+|+|||+|+
T Consensus 296 l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~ 330 (365)
T PLN03145 296 LQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQ 330 (365)
T ss_pred HhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEee
Confidence 4456899999999999999999999999999986
No 2
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=8.2e-45 Score=327.86 Aligned_cols=250 Identities=34% Similarity=0.521 Sum_probs=204.0
Q ss_pred CCCCCCCCcccCCCCceeEEEEeeccCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCC
Q 022320 32 SSSDTGKGRSKSSSNKVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF 111 (299)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~ 111 (299)
+.|..++.+....+..+.+|+.+++|.|+ .|||++++... ....+|+|||||||.++|.++++.+...+.+....
T Consensus 6 ~~p~~~~~~~~~~~~~~~~g~~s~~G~R~-~nED~~~v~~~----~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~ 80 (381)
T PTZ00224 6 PKPVLSKLVDRAGNSIFRCASACVNGYRE-SMEDAHLLYLT----DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP 80 (381)
T ss_pred CCCccccccccCCCccEEEEEEeCCCCCC-CCCCeeEeccC----CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc
Confidence 45666666666667789999999999987 89999875422 34479999999999999999999988766543221
Q ss_pred CccHHHHHHHHHHHHHHHHHhhccccCCCCcceEEEEE-EeCCeEEEEEccCceeEEEecCcccccccCCCChh--HHHH
Q 022320 112 WKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIV-IDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRR 188 (299)
Q Consensus 112 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~-i~~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~r 188 (299)
. ....|+.++..+++.+.+... . +|||+++++ ..+.+++++||||||+|++|+|++++||+||++.+ |+.|
T Consensus 81 ~--~~~~l~~a~~~~d~~i~~~~~---~-~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~R 154 (381)
T PTZ00224 81 M--TDERMEELCLEIDEEWMDSGR---E-GGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQR 154 (381)
T ss_pred c--cHHHHHHHHHHHHHHHHhccc---C-CCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhH
Confidence 1 245689999999999986543 2 345555444 45689999999999999999999999999999987 7889
Q ss_pred HHHcCCeeecCCCCcCccCCcccccccccCcCccC---------ccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHH
Q 022320 189 IEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKA---------HLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQE 259 (299)
Q Consensus 189 l~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~---------~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~ 259 (299)
|.+.|+.+.. .+.+|.+.+||+||+..+|. .+.+.|++..+++.++ |+||||||||||..+++++
T Consensus 155 I~~~gg~v~~-----~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~-D~llLaSDGL~d~~ls~eE 228 (381)
T PTZ00224 155 IEACGGRVVS-----NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSN-DFIILACDGVFEGNFSNEE 228 (381)
T ss_pred HHHccCEecc-----ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCC-CEEEEECCCcCcCccCHHH
Confidence 9999987763 36677889999999976542 3557899999999987 8999999999973499999
Q ss_pred HHHhhcC----CCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022320 260 AVDLVKP----IKDPQAAAKRLTTEALARKSKDDISCIVIRFG 298 (299)
Q Consensus 260 i~~i~~~----~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~ 298 (299)
+.+++.. ..+++.+|+.|++.|+.+++.||||+|||+|.
T Consensus 229 i~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~ 271 (381)
T PTZ00224 229 VVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLK 271 (381)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence 9999863 46899999999999999999999999999985
No 3
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6e-45 Score=316.13 Aligned_cols=239 Identities=30% Similarity=0.434 Sum_probs=203.4
Q ss_pred CceeEEEEeeccCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccC---C-Ccc--HHHHH
Q 022320 46 NKVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESN---F-WKD--PKAAI 119 (299)
Q Consensus 46 ~~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~---~-~~~--~~~~l 119 (299)
..+.++..++.|..+..|||++.+........ ..+|+|||||||+++++++++.+...+.+... . ... ..+.+
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l 84 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELL 84 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHH
Confidence 34788999999999988999998765333233 67999999999999888888877777765421 1 111 57899
Q ss_pred HHHHHHHHHHHHhhcc--ccCCCCcceEEEEEEeCCeEEEEEccCceeEEEecCcccccccCCCChhHHHHHHHcCCeee
Q 022320 120 TNAYRSTDQFILENSM--QLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVT 197 (299)
Q Consensus 120 ~~~~~~~~~~l~~~~~--~~~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~rl~~~gg~~~ 197 (299)
.+++..+++.+..... ....+||||++++++.++++|+|||||||+|++|++++++||.||++.++ ++..+....
T Consensus 85 ~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~---~~~~~~~~~ 161 (262)
T COG0631 85 KEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNR---LEQRGIITP 161 (262)
T ss_pred HHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHH---HHHhcCCCH
Confidence 9999999999998764 33578999999999999999999999999999999999999999999885 444454555
Q ss_pred cCCCCcCccCCcccccccccCcCccCccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHHHHHhhcCCCCHHHHHHHH
Q 022320 198 SLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQEAVDLVKPIKDPQAAAKRL 277 (299)
Q Consensus 198 ~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~i~~i~~~~~~~~~~a~~L 277 (299)
.....+|+.+ .+||+||+.. ...|++...+++++ ++|||||||||| .++++++.+++....+|+++++.|
T Consensus 162 ~~~~~~~~~~---~ltralG~~~-----~~~p~~~~~~~~~~-d~llL~SDGl~d-~v~~~~i~~il~~~~~~~~~~~~l 231 (262)
T COG0631 162 EEARSHPRRN---ALTRALGDFD-----LLEPDITELELEPG-DFLLLCSDGLWD-VVSDDEIVDILKNSETPQEAADKL 231 (262)
T ss_pred HHHHhCccch---hhhhhcCCCc-----ccceeEEEEEcCCC-CEEEEECCCCcc-CcCHHHHHHHHhcCCCHHHHHHHH
Confidence 4455556776 9999999988 58999999999998 999999999999 999999999999889999999999
Q ss_pred HHHHHhCCCCCCcEEEEEEeC
Q 022320 278 TTEALARKSKDDISCIVIRFG 298 (299)
Q Consensus 278 ~~~a~~~~~~DNiTvivv~~~ 298 (299)
++.|+.+++.||+|+|+|++.
T Consensus 232 i~~a~~~g~~DNiT~ilv~~~ 252 (262)
T COG0631 232 IELALEGGGPDNITVVLVRLN 252 (262)
T ss_pred HHHHHhcCCCCceEEEEEEee
Confidence 999999999999999999875
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-45 Score=303.11 Aligned_cols=259 Identities=30% Similarity=0.496 Sum_probs=226.9
Q ss_pred CCCCCCCcccCCCCceeEEEEeeccCCCCCCCceEEEEeecc-CCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCC
Q 022320 33 SSDTGKGRSKSSSNKVSHGYHLVEGQSGHDMEDYLVAEYRKK-KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF 111 (299)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~s~~G~r~~~neD~~~~~~~~~-~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~ 111 (299)
.|.+.++--.-..|.++||.+|++|+|- .|||++.+..... .-.++.+|+|||||.|+++|.+++.+++..+.+..++
T Consensus 7 KPkteKhn~~G~GNglryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F 85 (379)
T KOG0697|consen 7 KPKTEKHNAEGEGNGLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEF 85 (379)
T ss_pred CcccccccccCcCCceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHH
Confidence 3455555555558889999999999999 8999997654433 3478899999999999999999999999999886554
Q ss_pred Cc--------cHHHHHHHHHHHHHHHHHhhcccc--CCCCcceEEEEEEeCCeEEEEEccCceeEEEecCcccccccCCC
Q 022320 112 WK--------DPKAAITNAYRSTDQFILENSMQL--GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHE 181 (299)
Q Consensus 112 ~~--------~~~~~l~~~~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~ 181 (299)
.. +.+.-|+..|.++++.+....... ...+|+|++++++...++|++|+||||+++.|+|+...-|.||.
T Consensus 86 ~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHK 165 (379)
T KOG0697|consen 86 RGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHK 165 (379)
T ss_pred hhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCC
Confidence 43 567889999999998887655332 34589999999999999999999999999999999999999999
Q ss_pred Chh--HHHHHHHcCCeeecCCCCcCccCCcccccccccCcCccC---------ccccCCceEEEEeCCCCeEEEEecCCC
Q 022320 182 PHA--ERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKA---------HLSSEPDVRHVPIDPSIEFLILASDGL 250 (299)
Q Consensus 182 ~~~--e~~rl~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~---------~v~~~p~~~~~~l~~g~d~llL~SDGv 250 (299)
+.. |++||..+||.+.. .|.||.++++|+||+..||. .++++|++........|+||||++||+
T Consensus 166 P~~p~EkeRIqnAGGSVMI-----qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGI 240 (379)
T KOG0697|consen 166 PYLPKEKERIQNAGGSVMI-----QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGI 240 (379)
T ss_pred CCChHHHHHHhcCCCeEEE-----EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccch
Confidence 997 99999999998875 59999999999999999984 389999999999888889999999999
Q ss_pred CCCCCCHHHHHHhhcC----CCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022320 251 WKQVMKNQEAVDLVKP----IKDPQAAAKRLTTEALARKSKDDISCIVIRFG 298 (299)
Q Consensus 251 ~d~~l~~~~i~~i~~~----~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~ 298 (299)
|| +++.+|++++++. ..+...+|+.+++.++.+|++||+|+|+|-|.
T Consensus 241 wD-VMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp 291 (379)
T KOG0697|consen 241 WD-VMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFP 291 (379)
T ss_pred hh-hcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecC
Confidence 99 9999999999976 47899999999999999999999999999874
No 5
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-42 Score=311.25 Aligned_cols=249 Identities=47% Similarity=0.689 Sum_probs=212.7
Q ss_pred eeEEEE-eeccCCCCCCCceEEEEeecc----CCc-eeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCcc---HHHH
Q 022320 48 VSHGYH-LVEGQSGHDMEDYLVAEYRKK----KNH-VLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKD---PKAA 118 (299)
Q Consensus 48 ~~~~~~-s~~G~r~~~neD~~~~~~~~~----~~~-~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~---~~~~ 118 (299)
+..++. +.+|.++ .|||++....... .+. ...+|+|||||||..+|.++.++++..+.+...+... .+..
T Consensus 39 ~~~~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a 117 (330)
T KOG0698|consen 39 YRLGSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDA 117 (330)
T ss_pred ccceEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHH
Confidence 444444 7777777 8999998654422 233 5799999999999999999999999999987766663 7899
Q ss_pred HHHHHH-HHHHHHHhhccccCCCCcceEEEEEEeCCeEEEEEccCceeEEEecC-cccccccCCCChh--HHHHHHHcCC
Q 022320 119 ITNAYR-STDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERG-SANQITVDHEPHA--ERRRIEKQGG 194 (299)
Q Consensus 119 l~~~~~-~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r~~-~~~~lt~dh~~~~--e~~rl~~~gg 194 (299)
++++|. .++..+..........|+|++++++..+.++|+||+||||+++.+.+ ..++||.||.+.. |+.||.+.||
T Consensus 118 ~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG 197 (330)
T KOG0698|consen 118 LRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGG 197 (330)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCC
Confidence 999999 69999987622223556666666666566999999999999999865 7999999999975 9999999999
Q ss_pred eeecCCCCcCccCCcccccccccCcCcc-CccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHHHHHhhcC----CCC
Q 022320 195 FVTSLPGDVPRVNGQLAVARAFGDQSLK-AHLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQEAVDLVKP----IKD 269 (299)
Q Consensus 195 ~~~~~~~~~~~~~~~~~ltr~lG~~~~~-~~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~i~~i~~~----~~~ 269 (299)
.+..... ..|.+|.++++|+||+..+| +.+.++|++...++...++||||+|||||| +++.+++.++++. ...
T Consensus 198 ~v~~~~~-~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwD-v~s~qeav~~V~~~~~~~~~ 275 (330)
T KOG0698|consen 198 RVSNWGG-VWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWD-VVSNQEAVDLVRDELASISS 275 (330)
T ss_pred EEEEcCC-cceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhc-ccChHHHHHHHHHHhhcccc
Confidence 9986444 46999999999999999999 789999999999999988999999999999 9999999999988 568
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEEEeCC
Q 022320 270 PQAAAKRLTTEALARKSKDDISCIVIRFGQ 299 (299)
Q Consensus 270 ~~~~a~~L~~~a~~~~~~DNiTvivv~~~~ 299 (299)
+..++..|.+.|..+++.||+|||||.|..
T Consensus 276 ~~~a~~~l~~~a~~~~s~DnitvvvV~l~~ 305 (330)
T KOG0698|consen 276 PLAAAKLLATEALSRGSKDNITVVVVRLKS 305 (330)
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEEEecC
Confidence 999999999999999999999999999863
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.5e-43 Score=307.82 Aligned_cols=236 Identities=43% Similarity=0.660 Sum_probs=194.9
Q ss_pred eEEEEeeccCCCCCCCceEEEEeecc---CCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCc--cHHHHHHHHH
Q 022320 49 SHGYHLVEGQSGHDMEDYLVAEYRKK---KNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWK--DPKAAITNAY 123 (299)
Q Consensus 49 ~~~~~s~~G~r~~~neD~~~~~~~~~---~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 123 (299)
.+|+.+.+|.|. .|||.+++..... ......+|+|||||||.+++.++...+...+.+...... .+...|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 478999999999 8999999766442 456789999999999999999999999876665433222 5789999999
Q ss_pred HH-HHHHHHhhccc-cCCCCcceEEEEEEeCCeEEEEEccCceeEEEecCccc-ccccCCCChh--HHHHHHHcCCeeec
Q 022320 124 RS-TDQFILENSMQ-LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSAN-QITVDHEPHA--ERRRIEKQGGFVTS 198 (299)
Q Consensus 124 ~~-~~~~l~~~~~~-~~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r~~~~~-~lt~dh~~~~--e~~rl~~~gg~~~~ 198 (299)
.. +++.+...... ....+|||++++++.++++|+||+||||+|+++.+... +||+||++.+ |+.||++.||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 88888763221 33568888888999999999999999999999998888 9999999997 99999999999885
Q ss_pred CCCCcCccCCcccccccccCcCccC----ccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHHHHHhhcCCCC----H
Q 022320 199 LPGDVPRVNGQLAVARAFGDQSLKA----HLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQEAVDLVKPIKD----P 270 (299)
Q Consensus 199 ~~~~~~~~~~~~~ltr~lG~~~~~~----~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~i~~i~~~~~~----~ 270 (299)
..+.++.+.+||+||+..+|+ .++++|++..+++.+++.+|||||||||| +++++++.+++....+ |
T Consensus 160 ----~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd-~l~~~ei~~~v~~~~~~~~~~ 234 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWD-VLSNEEIVDIVRESLNSGRSP 234 (254)
T ss_dssp ----TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHT-TSHHHHHHHHHHHHHHHHSHH
T ss_pred ----chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccc-cCCHHHHHHHHHHHHhcCCcH
Confidence 358888889999999999998 79999999999999986799999999999 9999999999987544 8
Q ss_pred HHHHHHHHHHHHhCCCCCCc
Q 022320 271 QAAAKRLTTEALARKSKDDI 290 (299)
Q Consensus 271 ~~~a~~L~~~a~~~~~~DNi 290 (299)
+.+|+.|++.|+++++.|||
T Consensus 235 ~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 235 QEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999997
No 7
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=7.1e-40 Score=311.15 Aligned_cols=240 Identities=21% Similarity=0.288 Sum_probs=180.7
Q ss_pred ceeEEEEeeccCCCCCCCceEEEEeec-----cCC---ceeEEEEEEcCCCCChHHH----HHHHHHHHHHHhccCCCcc
Q 022320 47 KVSHGYHLVEGQSGHDMEDYLVAEYRK-----KKN---HVLGLFAIFDGHLGDRVPT----YLKDNLFNNILEESNFWKD 114 (299)
Q Consensus 47 ~~~~~~~s~~G~r~~~neD~~~~~~~~-----~~~---~~~~l~~V~DG~GG~~~a~----~~~~~~~~~~~~~~~~~~~ 114 (299)
.++++..+++|.+++.|||++.+.... ..+ ....+|+|||||||+.+++ ++++.+...+.+.......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 488999999998766999998653210 111 1346999999999986544 4444444333322111112
Q ss_pred HHHHHHHHHHHHHHHHHhhccc----cCCCCcceEEEEEEeCCeEEEEEccCceeEEE-ecCcccccccCCCChhHHHHH
Q 022320 115 PKAAITNAYRSTDQFILENSMQ----LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVC-ERGSANQITVDHEPHAERRRI 189 (299)
Q Consensus 115 ~~~~l~~~~~~~~~~l~~~~~~----~~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~-r~~~~~~lt~dh~~~~e~~rl 189 (299)
....+++++..+|+.|.+.... ....||||++++++.++++|++||||||+|++ |+|++++||+||++.++ +
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~---l 530 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR---E 530 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH---H
Confidence 4677999999999999875432 23468999999999999999999999999998 57899999999998864 4
Q ss_pred HHcCCeeecCCCCcCccCCcccccccccCcCccCccccCCceEEEEeCCCCeEEEEecCCCCCCC--CCH---HHHHHhh
Q 022320 190 EKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKQV--MKN---QEAVDLV 264 (299)
Q Consensus 190 ~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~--l~~---~~i~~i~ 264 (299)
++.| .....+..+ ++++.+||+||+...+ ..+|++..+.+.++ |+|||||||||| . +.. +++..++
T Consensus 531 v~~G-i~~~~a~~~---p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~g-D~lLLCSDGL~D-~~~ve~~~~~~l~~il 601 (645)
T PRK14559 531 IQRG-VEPQIAYAR---PDAYQLTQALGPRDNS---AIQPDIQFLEIEED-TLLLLCSDGLSD-NDLLETHWQTHLLPLL 601 (645)
T ss_pred HHhC-CCHHHHhcC---cccceeeeccCCCCCC---cccceEEEEEcCCC-CEEEEECCCCCC-CcccchHHHHHHHHHH
Confidence 4555 322222223 3445999999986533 35899999999987 999999999998 4 333 3456777
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCcEEEEEEeC
Q 022320 265 KPIKDPQAAAKRLTTEALARKSKDDISCIVIRFG 298 (299)
Q Consensus 265 ~~~~~~~~~a~~L~~~a~~~~~~DNiTvivv~~~ 298 (299)
....+++++++.|++.|+.++++||+|+|||+++
T Consensus 602 ~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 602 SSSANLDQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred hcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 7777899999999999999999999999999985
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=5.5e-39 Score=278.56 Aligned_cols=240 Identities=44% Similarity=0.632 Sum_probs=201.7
Q ss_pred eEEEEeeccCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCC-----CccHHHHHHHHH
Q 022320 49 SHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF-----WKDPKAAITNAY 123 (299)
Q Consensus 49 ~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 123 (299)
.+++.+..|.|. .|||++++...... .+..+|+|||||||+..+.++++.+...+.+.... ...+...|+++|
T Consensus 2 ~~~~~~~~g~r~-~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGDRK-TNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCCCC-CCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 467788888887 89999986532110 25689999999999988888888877777654322 245678899999
Q ss_pred HHHHHHHHhhccc--cCCCCcceEEEEEEeCCeEEEEEccCceeEEEecCcccccccCCCChh--HHHHHHHcCCeeecC
Q 022320 124 RSTDQFILENSMQ--LGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSL 199 (299)
Q Consensus 124 ~~~~~~l~~~~~~--~~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~rl~~~gg~~~~~ 199 (299)
..+++.+...... ....++||++++++.++.++++|+||||+|++++++++++|.||++.+ +..|+...++....
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~- 158 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN- 158 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEe-
Confidence 9999999877643 235688999999999999999999999999999999999999999996 78889998887541
Q ss_pred CCCcCccCCcccccccccCcCccCccccCCceEEEEe-CCCCeEEEEecCCCCCCCCCHHHHHHhhcCCC---CHHHHHH
Q 022320 200 PGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPI-DPSIEFLILASDGLWKQVMKNQEAVDLVKPIK---DPQAAAK 275 (299)
Q Consensus 200 ~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l-~~g~d~llL~SDGv~d~~l~~~~i~~i~~~~~---~~~~~a~ 275 (299)
...+....+|++||...+++.+...|++..+++ +++ ++|||||||||+ ++++++|.+++.... +++++|+
T Consensus 159 ----~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~-d~ill~SDG~~~-~l~~~~i~~~~~~~~~~~~~~~~a~ 232 (254)
T cd00143 159 ----GRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDD-DFLILASDGLWD-VLSNQEAVDIVRSELAKEDLQEAAQ 232 (254)
T ss_pred ----CEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCC-cEEEEECCCCee-ccChHHHHHHHHHHhcccCHHHHHH
Confidence 244555699999999987766688999999999 776 999999999999 999999999998876 7999999
Q ss_pred HHHHHHHhCCCCCCcEEEEEEe
Q 022320 276 RLTTEALARKSKDDISCIVIRF 297 (299)
Q Consensus 276 ~L~~~a~~~~~~DNiTvivv~~ 297 (299)
.|++.|..+++.||+|+|+++|
T Consensus 233 ~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 233 ELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHHHhCCCCCCEEEEEEeC
Confidence 9999999999999999999975
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.3e-38 Score=275.14 Aligned_cols=239 Identities=46% Similarity=0.669 Sum_probs=203.1
Q ss_pred ceeEEEEeeccCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCC----ccHHHHHHHH
Q 022320 47 KVSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFW----KDPKAAITNA 122 (299)
Q Consensus 47 ~~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~----~~~~~~l~~~ 122 (299)
.+.+++.+..|.|. .|||++++... ......+|+|||||||..+|.++++.+...+.+..... ..+...|+++
T Consensus 5 ~~~~~~~~~~~~r~-~neD~~~~~~~--~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (255)
T smart00332 5 GLRYGLSSMQGVRK-PMEDAHVITPD--LSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKA 81 (255)
T ss_pred ceeEEEecCCCCCC-CCcceEEEecc--CCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHH
Confidence 37788877777776 99999986532 12456899999999999999999999988877654322 2478889999
Q ss_pred HHHHHHHHHhhcccc--CCCCcceEEEEEEeCCeEEEEEccCceeEEEecCcccccccCCCChh--HHHHHHHcCCeeec
Q 022320 123 YRSTDQFILENSMQL--GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTS 198 (299)
Q Consensus 123 ~~~~~~~l~~~~~~~--~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~rl~~~gg~~~~ 198 (299)
+..+++.+....... ...++||++++++..+.++++|+||||+|+++++++.++|.||++.+ |..|+...++.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~ 161 (255)
T smart00332 82 FLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN 161 (255)
T ss_pred HHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEEC
Confidence 999999998776543 25689999999999999999999999999999999999999999976 78889888887653
Q ss_pred CCCCcCccCCcccccccccCcCccCccccCCceEEEEe-CCCCeEEEEecCCCCCCCCCHHHHHHhhcCCC---CHHHHH
Q 022320 199 LPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPI-DPSIEFLILASDGLWKQVMKNQEAVDLVKPIK---DPQAAA 274 (299)
Q Consensus 199 ~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l-~~g~d~llL~SDGv~d~~l~~~~i~~i~~~~~---~~~~~a 274 (299)
. +.+....+||++|...+++.+...|++...++ .++ |+|||||||||+ +++++++.+++.+.. ++.+++
T Consensus 162 ~-----~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~-d~ill~SDGv~~-~l~~~~i~~~~~~~~~~~~~~~~~ 234 (255)
T smart00332 162 G-----RVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKD-DFLILASDGLWD-VLSNQEVVDIVRKHLSKSDPEEAA 234 (255)
T ss_pred C-----eECCeEecccccCCHhhcCCeEeeeEEEEEEecCCC-cEEEEECCcccc-CCCHHHHHHHHHHHhhcCCHHHHH
Confidence 1 34445699999999998888889999999996 776 999999999999 999999999998765 699999
Q ss_pred HHHHHHHHhCCCCCCcEEEEE
Q 022320 275 KRLTTEALARKSKDDISCIVI 295 (299)
Q Consensus 275 ~~L~~~a~~~~~~DNiTvivv 295 (299)
+.|++.|..++..||+|+|||
T Consensus 235 ~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 235 KRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHHcCCCCCeEEEEC
Confidence 999999999999999999985
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-37 Score=266.50 Aligned_cols=157 Identities=37% Similarity=0.646 Sum_probs=142.1
Q ss_pred CCCCcceEEEEEEeCCeEEEEEccCceeEEEecCcccccccCCCChh--HHHHHHHcCCeeecCCCCcCccCCccccccc
Q 022320 138 GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHA--ERRRIEKQGGFVTSLPGDVPRVNGQLAVARA 215 (299)
Q Consensus 138 ~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~--e~~rl~~~gg~~~~~~~~~~~~~~~~~ltr~ 215 (299)
+..+|||.+++++.++++|+||.|||||++.|+|+.+-++.||.+.. |..||..+||.+.- ..|.||.++|+|+
T Consensus 327 G~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtl----DGRVNGGLNLSRA 402 (542)
T KOG0699|consen 327 GEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTL----DGRVNGGLNLSRA 402 (542)
T ss_pred CCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEee----cceecCccchhhh
Confidence 45678999999999999999999999999999999999999999997 89999999998873 2799999999999
Q ss_pred ccCcCccCc---------cccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHHHHHhhcC----CCCHHHHHHHHHHHHH
Q 022320 216 FGDQSLKAH---------LSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQEAVDLVKP----IKDPQAAAKRLTTEAL 282 (299)
Q Consensus 216 lG~~~~~~~---------v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~i~~i~~~----~~~~~~~a~~L~~~a~ 282 (299)
||+..||.. |+.-|+|....|.+.++|+|+++||+|+ +++.+++.++++. +.....+|+.|++.++
T Consensus 403 ~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN-~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CL 481 (542)
T KOG0699|consen 403 FGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWN-SMSSQEVVDFVRDLLAKNSSLSEICEELCDACL 481 (542)
T ss_pred hhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhh-hccHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence 999999953 7889999999999999999999999999 9999999988764 5677899999999999
Q ss_pred hCC------CCCCcEEEEEEeCC
Q 022320 283 ARK------SKDDISCIVIRFGQ 299 (299)
Q Consensus 283 ~~~------~~DNiTvivv~~~~ 299 (299)
... +.||+|+|++.|++
T Consensus 482 Ap~T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 482 APSTDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred CCCCCCCCcCCCcceEEEEEecc
Confidence 742 57999999999864
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-32 Score=238.74 Aligned_cols=221 Identities=35% Similarity=0.481 Sum_probs=174.6
Q ss_pred CCCceEEEEeeccCCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhcc--------------------------------
Q 022320 62 DMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEES-------------------------------- 109 (299)
Q Consensus 62 ~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~-------------------------------- 109 (299)
.-||.+-+... ...+..|+||+|||||.++++++.++++..+..+.
T Consensus 84 ~~edrv~~~~s--~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~ 161 (390)
T KOG0700|consen 84 AEEDRVSVAVS--EENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSS 161 (390)
T ss_pred cccCcceeeee--ccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccc
Confidence 35777754433 35678999999999999999999999998776210
Q ss_pred --CCCccHHHHHHHHHHHHHHHHHhhcccc------CCCCcceEEEEEEeCCeEEEEEccCceeEEEe---cC---cccc
Q 022320 110 --NFWKDPKAAITNAYRSTDQFILENSMQL------GPGGSTAVTAIVIDGKDLWVANVGDSRAVVCE---RG---SANQ 175 (299)
Q Consensus 110 --~~~~~~~~~l~~~~~~~~~~l~~~~~~~------~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r---~~---~~~~ 175 (299)
.......++|.+||.++.+.+....... --.+|+++++.++.+..+|+||+|||||++-+ ++ ...|
T Consensus 162 ~~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~q 241 (390)
T KOG0700|consen 162 ADQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQ 241 (390)
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEe
Confidence 0034568899999999999987544322 12356666666888999999999999999954 33 4689
Q ss_pred cccCCCChh--HHHHHHHcCCeeecC-CCCcCccCCcccccccccCcCcc---------------------CccccCCce
Q 022320 176 ITVDHEPHA--ERRRIEKQGGFVTSL-PGDVPRVNGQLAVARAFGDQSLK---------------------AHLSSEPDV 231 (299)
Q Consensus 176 lt~dh~~~~--e~~rl~~~gg~~~~~-~~~~~~~~~~~~ltr~lG~~~~~---------------------~~v~~~p~~ 231 (299)
||.||+..+ |+.||+..+...... -..+-|..|.+.+||+||+..+| |+++++|++
T Consensus 242 LS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i 321 (390)
T KOG0700|consen 242 LSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSI 321 (390)
T ss_pred cChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceE
Confidence 999999997 899999997633321 12234889999999999999998 458999999
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCCCHHHHHHhhcCC----CCHHHHHHHHHHHHHhCC
Q 022320 232 RHVPIDPSIEFLILASDGLWKQVMKNQEAVDLVKPI----KDPQAAAKRLTTEALARK 285 (299)
Q Consensus 232 ~~~~l~~g~d~llL~SDGv~d~~l~~~~i~~i~~~~----~~~~~~a~~L~~~a~~~~ 285 (299)
+.++|.+.|.||||+|||||+ +++++|+..++... ..-+.+|+.|+++|+.+.
T Consensus 322 ~~HrL~p~DkFLIlASDGLwE-~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 322 THHKLTPNDKFLILASDGLWE-YLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred EEEEcCCCCeEEEEeccchhh-hcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 999999999999999999999 99999999999873 333568999999998653
No 12
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=3.8e-25 Score=188.50 Aligned_cols=198 Identities=21% Similarity=0.229 Sum_probs=142.8
Q ss_pred CCCCceEEEEeeccCCceeEEEEEEcCCCCC--------hHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHh
Q 022320 61 HDMEDYLVAEYRKKKNHVLGLFAIFDGHLGD--------RVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILE 132 (299)
Q Consensus 61 ~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~--------~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 132 (299)
...||++++..+ ....+.+||||+||| ..+..+++.+.+.+.+......++...|.+++.++-++
T Consensus 89 ~~GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~--- 161 (330)
T KOG1379|consen 89 KGGEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ--- 161 (330)
T ss_pred CCCCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc---
Confidence 357999997532 456799999999998 34455555555555555555558888888887764433
Q ss_pred hccccCCCCcceEEEEEEe-CCeEEEEEccCceeEEEecCcccccccCCCChhHHHHHHHcCCeeecCCCCcCccCCccc
Q 022320 133 NSMQLGPGGSTAVTAIVID-GKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLA 211 (299)
Q Consensus 133 ~~~~~~~~~~tt~~~~~i~-~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~rl~~~gg~~~~~~~~~~~~~~~~~ 211 (299)
+...-+++|+|++++.+ +++|+++|+|||-+.++|+|+++.-|..+... .|...+
T Consensus 162 --~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~----------------------FN~PyQ 217 (330)
T KOG1379|consen 162 --KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY----------------------FNTPYQ 217 (330)
T ss_pred --CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec----------------------cCCcee
Confidence 22223556666666554 78999999999999999999999888765321 111111
Q ss_pred c-------cccccCcCccCccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHHHHHhhcC-----CCCHHHHHHHHHH
Q 022320 212 V-------ARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQEAVDLVKP-----IKDPQAAAKRLTT 279 (299)
Q Consensus 212 l-------tr~lG~~~~~~~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~i~~i~~~-----~~~~~~~a~~L~~ 279 (299)
| ..++++. ....+...+++++| |+|||+|||||| ++.+++|.+++.. ..+++..|+.|.+
T Consensus 218 Ls~~p~~~~~~~~d~------p~~ad~~~~~v~~G-DvIilATDGlfD-Nl~e~~Il~il~~~~~~~~~~lq~~A~~ia~ 289 (330)
T KOG1379|consen 218 LSSPPEGYSSYISDV------PDSADVTSFDVQKG-DVIILATDGLFD-NLPEKEILSILKGLDARGNLDLQVTAQKIAE 289 (330)
T ss_pred eccCCccccccccCC------ccccceEEEeccCC-CEEEEecccccc-cccHHHHHHHHHHhhccccccHHHHHHHHHH
Confidence 1 2223332 24567899999998 999999999999 9999999999865 3578999999999
Q ss_pred HHHh-----------------------CCCCCCcEEEEEEe
Q 022320 280 EALA-----------------------RKSKDDISCIVIRF 297 (299)
Q Consensus 280 ~a~~-----------------------~~~~DNiTvivv~~ 297 (299)
.|.. .|..||||+||..+
T Consensus 290 ~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 290 KARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred HHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 9952 23589999999753
No 13
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=5.7e-25 Score=187.66 Aligned_cols=222 Identities=30% Similarity=0.457 Sum_probs=163.3
Q ss_pred CceeEEEEEEcCCCCChHHHHHHHHHHHHHHhcc----------C----------------------------C--CccH
Q 022320 76 NHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEES----------N----------------------------F--WKDP 115 (299)
Q Consensus 76 ~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~----------~----------------------------~--~~~~ 115 (299)
..+..+|.+||||.|..+|-.+++-+...+.+.. + . ..-.
T Consensus 141 ~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LV 220 (493)
T KOG1323|consen 141 RADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLV 220 (493)
T ss_pred CCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhh
Confidence 3556899999999999888766655544443210 0 0 0012
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCcceEEEEEEeCCeEEEEEccCceeEEEecCcccccccCCCChhHHHHHHHcCCe
Q 022320 116 KAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGF 195 (299)
Q Consensus 116 ~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~rl~~~gg~ 195 (299)
.-+|..||++.+++|..........||||+++++.--+++|++|+||||++++|++++++|+++-++..|++||...+-.
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf~ 300 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAFR 300 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhhc
Confidence 45688999999999987766665666666666666689999999999999999999999999999999999999876321
Q ss_pred eec----------C----------------------------------------CCCcCccCCcccccccccCcCcc---
Q 022320 196 VTS----------L----------------------------------------PGDVPRVNGQLAVARAFGDQSLK--- 222 (299)
Q Consensus 196 ~~~----------~----------------------------------------~~~~~~~~~~~~ltr~lG~~~~~--- 222 (299)
-.+ + .+...+.-+.+.+||.||+..++
T Consensus 301 ~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~d 380 (493)
T KOG1323|consen 301 NPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVD 380 (493)
T ss_pred ChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeec
Confidence 110 0 01112222346789999988766
Q ss_pred ------CccccCCceEEEEeCC----CCeEEEEecCCCCCCCCCHHHHHHhhcCC------CCH---HHHHHHHHHHHHh
Q 022320 223 ------AHLSSEPDVRHVPIDP----SIEFLILASDGLWKQVMKNQEAVDLVKPI------KDP---QAAAKRLTTEALA 283 (299)
Q Consensus 223 ------~~v~~~p~~~~~~l~~----g~d~llL~SDGv~d~~l~~~~i~~i~~~~------~~~---~~~a~~L~~~a~~ 283 (299)
|.+.+.|+++...+.+ .||++||+|||+|| +++++++..+++.. .+| ..+|+.|+..|..
T Consensus 381 snl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWD-VlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg 459 (493)
T KOG1323|consen 381 SNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWD-VLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARG 459 (493)
T ss_pred CCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhh-hcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcC
Confidence 4467888888887663 26899999999999 99999999998762 233 3578888888853
Q ss_pred -------------CCCCCCcEEEEEEeC
Q 022320 284 -------------RKSKDDISCIVIRFG 298 (299)
Q Consensus 284 -------------~~~~DNiTvivv~~~ 298 (299)
.++.|||||.||.+.
T Consensus 460 ~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 460 QQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred ccCCCceeccCCCcCCCCceEEEEEecc
Confidence 246799999999864
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=7.3e-23 Score=195.35 Aligned_cols=241 Identities=27% Similarity=0.393 Sum_probs=201.0
Q ss_pred eeEEEEeeccCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHH
Q 022320 48 VSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTD 127 (299)
Q Consensus 48 ~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (299)
|.||++...|.|.+ +-=+.. ....+.++....|+.+||-+..+..+.+...+...+.++.....+-.+.|+.+|...+
T Consensus 522 ~t~Gv~~~~gqrnk-~c~~~~-~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr~~fl~~~ 599 (1081)
T KOG0618|consen 522 WTYGVAGVSGQRNK-VCSRAV-WVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMRNTFLRLN 599 (1081)
T ss_pred eeeccchhcccccc-hhhhhh-hhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHh
Confidence 77999999999983 433332 2333334566899999999999999999999888888876655555777999999999
Q ss_pred HHHHhhccccCCCCcceEEEEEEeC-------CeEEEEEccCceeEEEecCcccccccCCCCh--h-HHHHHHHcCCeee
Q 022320 128 QFILENSMQLGPGGSTAVTAIVIDG-------KDLWVANVGDSRAVVCERGSANQITVDHEPH--A-ERRRIEKQGGFVT 197 (299)
Q Consensus 128 ~~l~~~~~~~~~~~~tt~~~~~i~~-------~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~--~-e~~rl~~~gg~~~ 197 (299)
+++...+. ..++..+.+-+..+ ..++.||+|+|.+++.++|+..++|+-.... . |.+|+++.+|++.
T Consensus 600 rklg~~g~---~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ 676 (1081)
T KOG0618|consen 600 RKLGEEGQ---VLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFIT 676 (1081)
T ss_pred hhhhhhhc---cccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeec
Confidence 99955443 23444444333322 3689999999999999999988888754322 2 9999999999998
Q ss_pred cCCCCcCccCCcccccccccCcCccCccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHHHHHhhcCCCCHHHHHHHH
Q 022320 198 SLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQEAVDLVKPIKDPQAAAKRL 277 (299)
Q Consensus 198 ~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~i~~i~~~~~~~~~~a~~L 277 (299)
+ ..+.+|....||++|.+...|.+.+.|++....|.+.|++||+++-++|+ +++-+++.+.+++..+|-.+|++|
T Consensus 677 e----d~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~-~Lsid~a~~~vRn~~dpL~AAkKL 751 (1081)
T KOG0618|consen 677 E----DNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWS-VLSIDTAVDAVRNVEDPLLAAKKL 751 (1081)
T ss_pred C----CCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhh-hccHHHHHHHHhcCCchHHHHHHH
Confidence 4 25889999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHhCCCCCCcEEEEEEeC
Q 022320 278 TTEALARKSKDDISCIVIRFG 298 (299)
Q Consensus 278 ~~~a~~~~~~DNiTvivv~~~ 298 (299)
++.|+++|+.||++|+||++.
T Consensus 752 ~d~AqSYgc~~nv~vlVv~l~ 772 (1081)
T KOG0618|consen 752 CDLAQSYGCAENVSVLVVRLN 772 (1081)
T ss_pred HHHHHhcccccCeeEEEEEee
Confidence 999999999999999999975
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.85 E-value=8.2e-21 Score=160.58 Aligned_cols=178 Identities=19% Similarity=0.269 Sum_probs=97.2
Q ss_pred EeeccCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCCh----HHHHHHHHHHHHHHhccCCCcc--HHHHHHHHHHHH
Q 022320 53 HLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDR----VPTYLKDNLFNNILEESNFWKD--PKAAITNAYRST 126 (299)
Q Consensus 53 ~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~----~a~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 126 (299)
.+++|.+. .|||++.+... .+..+++|+||+||.. +|..+++.+...+......... ....++.+..++
T Consensus 3 ~sh~~~~~-~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGA-PNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSS-S--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCC-CCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 46778887 89999984322 3346779999999874 4555555555555544332221 122333333333
Q ss_pred HHHH-----HhhccccCCCCcceEEEEEEeCCeEEEEEccCceeEEE-ecCcccccccCCCChhHHHHHHHcCCeeecCC
Q 022320 127 DQFI-----LENSMQLGPGGSTAVTAIVIDGKDLWVANVGDSRAVVC-ERGSANQITVDHEPHAERRRIEKQGGFVTSLP 200 (299)
Q Consensus 127 ~~~l-----~~~~~~~~~~~~tt~~~~~i~~~~l~~a~vGDsr~~l~-r~~~~~~lt~dh~~~~e~~rl~~~gg~~~~~~ 200 (299)
...+ ..........++||++++++.++.++++|+||||+|++ +++++.+++.+|+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~--------------- 142 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYP--------------- 142 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHH---------------
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhh---------------
Confidence 3221 11112334678999999999999999999999999764 79999999999862211
Q ss_pred CCcCccCCcccccccccCcCccCccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHH-HHHHhhcC
Q 022320 201 GDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQ-EAVDLVKP 266 (299)
Q Consensus 201 ~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~-~i~~i~~~ 266 (299)
..++.+..... ....++..+++.++ +.|||||||||+ .+... .+..++..
T Consensus 143 ----------~~~~~~~~~~~----~~~~~~~~~~~~~~-d~ilL~SDG~~~-~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 143 ----------NQTRSLTGDDP----EPDVQYGSIPLEEG-DVILLCSDGVWD-NLRSYEDLEQFLKD 193 (212)
T ss_dssp ----------HCTTSCCHHCC----CTETEEEEEE--TT--EEEEE-HHHHT-TS-HHHHHHHH---
T ss_pred ----------hhhhccCcccc----ccCCeEEEEEcCCC-CEEEEECcCccc-cCCCHHHHHHHhhh
Confidence 11222222110 23446777888887 999999999999 88754 47777655
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.82 E-value=4.6e-18 Score=141.60 Aligned_cols=184 Identities=18% Similarity=0.165 Sum_probs=134.7
Q ss_pred eeEEEEeeccCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHH
Q 022320 48 VSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTD 127 (299)
Q Consensus 48 ~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (299)
+.++.....+.. ...|.+.+... +++..+++|+||+|++..|..++..+...+.+...... .+...+..+|
T Consensus 4 ~~~~~~~~p~~~--~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDATQ--VGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLN 74 (193)
T ss_pred eEEEEEEcchHh--cCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHH
Confidence 566677776664 48898865432 23468999999999998888888777776655432222 2555667778
Q ss_pred HHHHhhccccCCCCcceEEEEEE--eCCeEEEEEccCceeEEEe-cCcccccccCCCChhHHHHHHHcCCeeecCCCCcC
Q 022320 128 QFILENSMQLGPGGSTAVTAIVI--DGKDLWVANVGDSRAVVCE-RGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVP 204 (299)
Q Consensus 128 ~~l~~~~~~~~~~~~tt~~~~~i--~~~~l~~a~vGDsr~~l~r-~~~~~~lt~dh~~~~e~~rl~~~gg~~~~~~~~~~ 204 (299)
+.+.... ...+++|++++++ .+++++++|+||+|+|+++ ++...+.+.+
T Consensus 75 ~~l~~~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~------------------------- 126 (193)
T smart00331 75 RAIYENG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDD------------------------- 126 (193)
T ss_pred HHHHhcC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCC-------------------------
Confidence 8776652 2346777777776 5789999999999999998 5554444433
Q ss_pred ccCCcccccccccCcCccCccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHHHHHhhcCC--CCHHHHHHHHHHHHH
Q 022320 205 RVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQEAVDLVKPI--KDPQAAAKRLTTEAL 282 (299)
Q Consensus 205 ~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~i~~i~~~~--~~~~~~a~~L~~~a~ 282 (299)
.+..+|... ..+++...+++.+| |.|+|+|||||+ .++++++.+++.+. .++++++++|.+.+.
T Consensus 127 -------~~~~lG~~~-----~~~~~~~~~~l~~g-d~l~l~TDGl~e-~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 127 -------LGAPLGLEP-----DVEVDVRELTLEPG-DLLLLYTDGLTE-ARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred -------CCceeeeCC-----CCcceeEEEeeCCC-CEEEEECCCccc-cCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 234566544 34577888999998 999999999999 99999999999875 468888888887654
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.72 E-value=5.4e-16 Score=152.70 Aligned_cols=187 Identities=17% Similarity=0.125 Sum_probs=131.4
Q ss_pred CCCCceEEEEeeccCCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhhccccCCC
Q 022320 61 HDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPG 140 (299)
Q Consensus 61 ~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 140 (299)
..+.|.+.+... +++..+++|+||+|++..|...+..+...+.+......+ ...++..+|+.+..... ..
T Consensus 565 ~vsGD~y~~~~l---~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~lN~~L~~~~~---~~ 634 (764)
T TIGR02865 565 LVSGDSYSFGKL---SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKTVNSILSLRST---DE 634 (764)
T ss_pred cccCceEEEEEE---CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHhCCC---CC
Confidence 378999864322 244578999999998766666555444433221111112 35567777877755422 23
Q ss_pred CcceEEEEEEe--CCeEEEEEccCceeEEEecCcccccccCCCChhHHHHHHHcCCeeecCCCCcCccCCcccccccccC
Q 022320 141 GSTAVTAIVID--GKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGD 218 (299)
Q Consensus 141 ~~tt~~~~~i~--~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~rl~~~gg~~~~~~~~~~~~~~~~~ltr~lG~ 218 (299)
..+|+.+++++ .+++.++++|+++.|+.|++++.+++..+. .+|.
T Consensus 635 ~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~l---------------------------------PlGi 681 (764)
T TIGR02865 635 KFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNL---------------------------------PIGI 681 (764)
T ss_pred eEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCc---------------------------------eeEe
Confidence 56777777775 689999999999999999888777654322 1333
Q ss_pred cCccCccccCCceEEEEeCCCCeEEEEecCCCCCCCCCHHH-----HHHhhcC--CCCHHHHHHHHHHHHHhCC---CCC
Q 022320 219 QSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWKQVMKNQE-----AVDLVKP--IKDPQAAAKRLTTEALARK---SKD 288 (299)
Q Consensus 219 ~~~~~~v~~~p~~~~~~l~~g~d~llL~SDGv~d~~l~~~~-----i~~i~~~--~~~~~~~a~~L~~~a~~~~---~~D 288 (299)
.. ..+++....++.+| |+|||+|||++| ..++.+ +.+++.. ..+|+++++.|++.+.+.. ..|
T Consensus 682 l~-----~~~~~~~~~~L~~G-D~Lll~SDGv~E-~~~~~~~~~~~l~~~l~~~~~~~p~ela~~Il~~a~~~~~~~~~D 754 (764)
T TIGR02865 682 LD-----EVDVELVRKKLKNG-DLIVMVSDGVLE-GEKEVEGKVLWLVRKLKETNTNDPEEIAEYLLEKAKELRSGKIKD 754 (764)
T ss_pred cc-----CCccceEEEEeCCC-CEEEEECCCCCc-CCcccccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCCCC
Confidence 22 34677788999998 999999999999 765432 7777754 3689999999999998643 479
Q ss_pred CcEEEEEEe
Q 022320 289 DISCIVIRF 297 (299)
Q Consensus 289 NiTvivv~~ 297 (299)
|+|++++++
T Consensus 755 D~Tvlvirv 763 (764)
T TIGR02865 755 DMTVIVAKV 763 (764)
T ss_pred CeEEEEEEe
Confidence 999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.64 E-value=4.4e-14 Score=117.45 Aligned_cols=176 Identities=18% Similarity=0.192 Sum_probs=114.1
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhhccccCCCCcceEEEEEEe--CCe
Q 022320 77 HVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNFWKDPKAAITNAYRSTDQFILENSMQLGPGGSTAVTAIVID--GKD 154 (299)
Q Consensus 77 ~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~i~--~~~ 154 (299)
++..+++|+|+.|.+-.|...+..+...+........+ ....+..+|+.+....... ...+|++++.++ .+.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~~~~ 75 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD--NRYATACYAIIDPETGT 75 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETTTTE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc--cccceEEEEEecccceE
Confidence 34578999999997766655555444444332222222 4556666777775544332 244555555544 578
Q ss_pred EEEEEccCceeEEEecCc--ccccccCCCChhHHHHHHHcCCeeecCCCCcCccCCcccccccccCcCccCccccCCceE
Q 022320 155 LWVANVGDSRAVVCERGS--ANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVR 232 (299)
Q Consensus 155 l~~a~vGDsr~~l~r~~~--~~~lt~dh~~~~e~~rl~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~ 232 (299)
++++|+|+++++++++++ ...+... .-.||... ...+...
T Consensus 76 l~~~~aG~~~~l~~~~~~~~~~~~~~~---------------------------------~~~lG~~~-----~~~~~~~ 117 (193)
T PF07228_consen 76 LTYANAGHPPPLLLRPGGREIEQLESE---------------------------------GPPLGIFE-----DIDYQEQ 117 (193)
T ss_dssp EEEEEESSSEEEEEETTCTEEEEETCS---------------------------------SBBCSSSC-----TTCEEEE
T ss_pred EEEeCCCCCCEEEEeccccceeecccC---------------------------------ccceeeec-----cccccce
Confidence 999999999999999843 2211111 11255543 3456677
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCCHH-------HHHHhhcC--CCCHHHHHHHHHHHHHhC---CCCCCcEEEEEEeC
Q 022320 233 HVPIDPSIEFLILASDGLWKQVMKNQ-------EAVDLVKP--IKDPQAAAKRLTTEALAR---KSKDDISCIVIRFG 298 (299)
Q Consensus 233 ~~~l~~g~d~llL~SDGv~d~~l~~~-------~i~~i~~~--~~~~~~~a~~L~~~a~~~---~~~DNiTvivv~~~ 298 (299)
.+++++| |.|+|+||||+| ....+ .+.+++.+ ..++++.++.|++.+... ...||+|+++++++
T Consensus 118 ~~~l~~g-d~l~l~TDGl~e-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 118 EIQLEPG-DRLLLYTDGLFE-ALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EEE--TT-EEEEEECHHHCT-TTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred EEEeccc-cEEEEeCCChhh-ccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 8999998 999999999999 76433 34566653 467899999999999873 47899999999985
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.76 E-value=2.6e-06 Score=78.07 Aligned_cols=203 Identities=14% Similarity=0.099 Sum_probs=126.7
Q ss_pred eeEEEEeeccCCCCCCCceEEEEeeccCCceeEEEEEEcCCCCChHHHHHHHHHHHHHHhccCC-CccHHHHHHHHHHHH
Q 022320 48 VSHGYHLVEGQSGHDMEDYLVAEYRKKKNHVLGLFAIFDGHLGDRVPTYLKDNLFNNILEESNF-WKDPKAAITNAYRST 126 (299)
Q Consensus 48 ~~~~~~s~~G~r~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 126 (299)
+.++..+.+-.. ..-|+|-+... +.....++|.|..|-+-.|..........+...... .-++ ...+..+
T Consensus 149 ~~i~~~~~~a~~--vGGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~~~~p----~~~l~~~ 219 (367)
T COG2208 149 IDIEAILVPASE--VGGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESGPLDP----ADVLETL 219 (367)
T ss_pred ccceeeEeEHHH--cCCceEEEEEE---CCcEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcccCCH----HHHHHHH
Confidence 444444443332 46677754433 235688999999995544444433222222221111 1222 3345556
Q ss_pred HHHHHhhccccCCCCcceEEEEEEe--CCeEEEEEccCceeEEEecCcccccccCCCChhHHHHHHHcCCeeecCCCCcC
Q 022320 127 DQFILENSMQLGPGGSTAVTAIVID--GKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVP 204 (299)
Q Consensus 127 ~~~l~~~~~~~~~~~~tt~~~~~i~--~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~rl~~~gg~~~~~~~~~~ 204 (299)
|+.+....... +-+|+...+++ .+.+.++++|---.++++.++.....
T Consensus 220 n~~~~~~~~~~---~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~--------------------------- 269 (367)
T COG2208 220 NRVLKQNLEED---MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVE--------------------------- 269 (367)
T ss_pred HHHHHhcccCC---cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeE---------------------------
Confidence 66665554432 56666666665 58899999999999999865321000
Q ss_pred ccCCcccccccccCcCccCccccCCceEEEEeCCCCeEEEEecCCCCC------CCCCHHHHHHhhcC--CCCHHHHHHH
Q 022320 205 RVNGQLAVARAFGDQSLKAHLSSEPDVRHVPIDPSIEFLILASDGLWK------QVMKNQEAVDLVKP--IKDPQAAAKR 276 (299)
Q Consensus 205 ~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~g~d~llL~SDGv~d------~~l~~~~i~~i~~~--~~~~~~~a~~ 276 (299)
... .....+|... ...+.+...++++| |.|+|.|||+.+ ..+..+...+++.. ..+++++++.
T Consensus 270 ~l~---~~g~piG~~~-----~~~~~~~~~~l~~g-d~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 340 (367)
T COG2208 270 DLT---ALGLPIGLLP-----DYQYEVASLQLEPG-DLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEA 340 (367)
T ss_pred Ecc---CCCceeeecC-----CccchheeEEecCC-CEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHH
Confidence 111 4445666655 56777889999997 999999999998 23445666666663 4678888888
Q ss_pred HHHHHHhC----CCCCCcEEEEEEeC
Q 022320 277 LTTEALAR----KSKDDISCIVIRFG 298 (299)
Q Consensus 277 L~~~a~~~----~~~DNiTvivv~~~ 298 (299)
+.+...+. ...||+|++++++.
T Consensus 341 i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 341 ILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHHHHhhCCccccCceEEEEEEec
Confidence 88877763 34688999999985
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=81.39 E-value=13 Score=32.96 Aligned_cols=102 Identities=12% Similarity=0.053 Sum_probs=55.3
Q ss_pred CCceEEEEeeccCCceeEEEEEEc--CCCCCh-HHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHhhccccC
Q 022320 63 MEDYLVAEYRKKKNHVLGLFAIFD--GHLGDR-VPTYLKDNLFNNILEESN-FWKDPKAAITNAYRSTDQFILENSMQLG 138 (299)
Q Consensus 63 neD~~~~~~~~~~~~~~~l~~V~D--G~GG~~-~a~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 138 (299)
.-|.+-+..- +++...|.++| |||++. .|..+...++..++.... ............+..+|+.+.......
T Consensus 150 ~GD~~d~~~l---~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~p~~~l~~lN~~l~~~~~~~- 225 (303)
T PRK10693 150 PGLVLDIAAL---SDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPG- 225 (303)
T ss_pred CccEEeeeec---CCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHhcCCCc-
Confidence 5566643221 24456677777 788775 334445554554544321 000000114556667788777653221
Q ss_pred CCCcceEEEEEEe--CCeEEEEEccCceeEEEecC
Q 022320 139 PGGSTAVTAIVID--GKDLWVANVGDSRAVVCERG 171 (299)
Q Consensus 139 ~~~~tt~~~~~i~--~~~l~~a~vGDsr~~l~r~~ 171 (299)
. -|+...+++ .+.+.+++.|....++..++
T Consensus 226 --~-~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~ 257 (303)
T PRK10693 226 --Q-FPLLVGYYHRELKNLILVSAGLNATLNTGEH 257 (303)
T ss_pred --e-eeEEEEEEEcCCCeEEEEeCCCCCEEecCCe
Confidence 2 344444554 47899999999998853343
No 21
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=44.72 E-value=14 Score=26.63 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=31.8
Q ss_pred eCCCCeEEEEecCCCCCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHhCCCCCCcE
Q 022320 236 IDPSIEFLILASDGLWKQVMKNQEAVDLVKPIKDPQAAAKRLTTEALARKSKDDIS 291 (299)
Q Consensus 236 l~~g~d~llL~SDGv~d~~l~~~~i~~i~~~~~~~~~~a~~L~~~a~~~~~~DNiT 291 (299)
+.++ |-++|+.|||+- .+...+..+-+...+ ..+-.|.+-..+||-.+.++
T Consensus 22 l~~~-D~vlL~qdGV~a-Al~~~~~~~sl~~~p---~~~~alkeDl~ARGl~~~~s 72 (96)
T COG2168 22 LTEG-DAVLLLQDGVYA-ALKGNRYLASLRESP---IKVYALKEDLLARGLTGQIS 72 (96)
T ss_pred hccc-CeEEEEcccchh-hhcCcHHHHHHhcCc---cceeeehhhHHhccchhhcC
Confidence 4566 788899999998 887777666665522 22333444445555444333
No 22
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=42.49 E-value=16 Score=25.01 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=12.2
Q ss_pred CCCeEEEEecCCCCC
Q 022320 238 PSIEFLILASDGLWK 252 (299)
Q Consensus 238 ~g~d~llL~SDGv~d 252 (299)
+| ..+|+++||+|=
T Consensus 26 ~G-~Rllva~nGv~l 39 (72)
T PF09436_consen 26 PG-HRLLVASNGVFL 39 (72)
T ss_pred CC-cEEEEecCcEEE
Confidence 45 899999999995
No 23
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=33.34 E-value=2.4e+02 Score=24.05 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=26.0
Q ss_pred ceEEEEEEeC-CeEEEEEccCceeEE--EecCcccccccCCC
Q 022320 143 TAVTAIVIDG-KDLWVANVGDSRAVV--CERGSANQITVDHE 181 (299)
Q Consensus 143 tt~~~~~i~~-~~l~~a~vGDsr~~l--~r~~~~~~lt~dh~ 181 (299)
++++++-++. +++...---||.|.+ +|.|..+|--.+|+
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phs 273 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHS 273 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCc
Confidence 4455454553 677776667877666 47888887777775
No 24
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=30.69 E-value=88 Score=25.65 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=30.2
Q ss_pred CeEEEEecCCCCC--C--------CCCHHHHHHhhcC----CCCHHHHHHHHHHHHHhCC
Q 022320 240 IEFLILASDGLWK--Q--------VMKNQEAVDLVKP----IKDPQAAAKRLTTEALARK 285 (299)
Q Consensus 240 ~d~llL~SDGv~d--~--------~l~~~~i~~i~~~----~~~~~~~a~~L~~~a~~~~ 285 (299)
||.+|..|.|+|. - +|..+..=+.+.+ ..-|.+.|+.|+++-.++|
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 4789999999994 0 2222222233322 2457899999999988876
No 25
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=30.62 E-value=61 Score=21.18 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.0
Q ss_pred CCHHHHHHhhcC-CCCHHHHHHHHHH
Q 022320 255 MKNQEAVDLVKP-IKDPQAAAKRLTT 279 (299)
Q Consensus 255 l~~~~i~~i~~~-~~~~~~~a~~L~~ 279 (299)
-++++|..++.. +.+|.+++++|+.
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 478899988876 5799999999986
No 26
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=25.60 E-value=2.4e+02 Score=23.00 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=10.8
Q ss_pred eEEEEecCCCCC
Q 022320 241 EFLILASDGLWK 252 (299)
Q Consensus 241 d~llL~SDGv~d 252 (299)
..||+.|||..+
T Consensus 109 ~~vIiiTDG~~~ 120 (199)
T cd01457 109 ETFLVITDGAPD 120 (199)
T ss_pred eEEEEEcCCCCC
Confidence 789999999986
No 27
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=23.28 E-value=2.1e+02 Score=22.38 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.0
Q ss_pred eEEEEecCCCCC
Q 022320 241 EFLILASDGLWK 252 (299)
Q Consensus 241 d~llL~SDGv~d 252 (299)
..|||.|||..+
T Consensus 105 k~iillTDG~~~ 116 (164)
T cd01482 105 KVVILITDGKSQ 116 (164)
T ss_pred EEEEEEcCCCCC
Confidence 578899999875
No 28
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=22.06 E-value=1.4e+02 Score=15.79 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.3
Q ss_pred eCCeEEEEEccCceeEEE
Q 022320 151 DGKDLWVANVGDSRAVVC 168 (299)
Q Consensus 151 ~~~~l~~a~vGDsr~~l~ 168 (299)
.++.+|++-.|..|+..+
T Consensus 11 ~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 11 SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp TTSEEEEEECCCTEEEEE
T ss_pred CCCCEEEEECCCCEEEEC
Confidence 689999999999988754
No 29
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=21.00 E-value=1.7e+02 Score=16.46 Aligned_cols=19 Identities=32% Similarity=0.594 Sum_probs=15.3
Q ss_pred CCeEEEEEccCceeEEEec
Q 022320 152 GKDLWVANVGDSRAVVCER 170 (299)
Q Consensus 152 ~~~l~~a~vGDsr~~l~r~ 170 (299)
++++|+++-|+-.+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 5678999998888888864
No 30
>COG5518 Bacteriophage capsid portal protein [General function prediction only]
Probab=20.26 E-value=88 Score=28.60 Aligned_cols=133 Identities=20% Similarity=0.253 Sum_probs=75.3
Q ss_pred EeCCeEEEEEccCceeEEEecCcccccccCCCChhHHHHHHHcCCeeecCCCCcCccCCcccccccccCcCccCccccCC
Q 022320 150 IDGKDLWVANVGDSRAVVCERGSANQITVDHEPHAERRRIEKQGGFVTSLPGDVPRVNGQLAVARAFGDQSLKAHLSSEP 229 (299)
Q Consensus 150 i~~~~l~~a~vGDsr~~l~r~~~~~~lt~dh~~~~e~~rl~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p 229 (299)
|+.+++|+-.-||-|.|=++.|...-.+.-..+++|....+- | .+...+.|.||.-..- +..-..
T Consensus 190 ID~k~v~FkeyGdpr~~d~~~G~yv~~~~le~~ane~ih~kI-g-------------s~~YG~Prwig~ivsl-ygarkA 254 (492)
T COG5518 190 IDLKTVWFKEYGDPRPYDFTTGNYVSMFHLEEPANEDIHQKI-G-------------SGAYGLPRWIGAIVSL-YGARKA 254 (492)
T ss_pred eccceEEEEecCCCcceeeccCccchhhhhhcchhhhHHHhh-c-------------ccccCchHHHHHHHHH-HhhhhH
Confidence 566789999999999999999966655555444554221111 1 1111233333321100 000000
Q ss_pred -ceEEEEeCCC--CeEEEEecCCCCCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHhC-----CCCCCcEEEEEEeC
Q 022320 230 -DVRHVPIDPS--IEFLILASDGLWKQVMKNQEAVDLVKPIKDPQAAAKRLTTEALAR-----KSKDDISCIVIRFG 298 (299)
Q Consensus 230 -~~~~~~l~~g--~d~llL~SDGv~d~~l~~~~i~~i~~~~~~~~~~a~~L~~~a~~~-----~~~DNiTvivv~~~ 298 (299)
++...-..+| --++|..+||..+ .-+-..+.+.+.....++.+-+-|+-++... .+..|||-|-|++.
T Consensus 255 eeln~~YfknGrH~paai~~~~g~l~-e~~y~~L~eyMk~~~g~eNa~~flm~e~~G~~~kn~hgd~~i~~vkV~Ik 330 (492)
T COG5518 255 EELNRMYFKNGRHAPAAIYMTDGALS-EEDYNNLREYMKSAKGPENARNFLMYEPNGKKIKNAHGDGNISPVKVQIK 330 (492)
T ss_pred HHHHHHHHhcCccCceEEEecccccc-hHHHHHHHHHHhhcCCchhhhhheeeccCCeeccccCCCCCcCceeEEee
Confidence 1111111222 2478899999998 7777888888888777777666665554322 23567777766653
Done!