BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022322
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 136/293 (46%), Gaps = 25/293 (8%)
Query: 15 TVKPFVNGGASGMLATCVIQPIDMIKVRIQLGQGSAGTVTK--------------TMLKN 60
TVK F+ G + +A + P+D KVR+Q+ S G V TM++
Sbjct: 2 TVK-FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 61 EGFGAFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIG 120
EG + Y GL AGL RQ ++ + R+G + + K + + + L G T GA+
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSV--KQFYTKGSEHAGIGSRLLAGSTTGALA 118
Query: 121 ASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMA 180
+V P D+ +R QA A A R Y + +A I +EG+ LWKG P V R
Sbjct: 119 VAVAQPTDVVKVRFQAQAR--AGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAI 176
Query: 181 LNMGMLASYDQSVEFFRDACGLS-ELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPD 239
+N L +YD + A ++ +LP ++ +GF + + P D VKT +
Sbjct: 177 VNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKT---RYMNS 233
Query: 240 AQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRIAPHVMMTWIFLNQIQK 292
A G+Y G CA+ L+ GP FY GF +R+ ++ ++ Q+++
Sbjct: 234 ALGQYHSAG--HCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 19 FVNGGASGMLATCVIQPIDMIKVRIQ---LGQ-GSAGTVTKTMLKNEGFGAFYKGLSAGL 74
F + +G T + P+D++K R LGQ SAG TML+ EG AFYKG
Sbjct: 206 FTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSF 265
Query: 75 LRQATYTTARLGSFRILTNKAIEANDGKPLPL 106
LR ++ ++ L + A + P
Sbjct: 266 LRLGSWNVVMFVTYEQLKRALMAAYQSREAPF 297
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 112/269 (41%), Gaps = 20/269 (7%)
Query: 16 VKPFVNGGASGMLATCVIQPIDMIKVRIQLGQGSAGTVTKTML-----------KNEGFG 64
+K F+ GG + ++ + PI+ +K+ +Q+ S + K +GF
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 65 AFYKGLSAGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQ----KALCGLTAGAIG 120
+F++G A ++R T A +F+ + + ++ G AGA
Sbjct: 68 SFWRGNLANVIRYFP-TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 126
Query: 121 ASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMA 180
P D A R+ AD AAQ R +T + +I +G+ L++G +V +
Sbjct: 127 LCFVYPLDFARTRLAADVGKGAAQ-REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIII 185
Query: 181 LNMGMLASYDQSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDA 240
YD + D + + + + A TV+ A S PFD V+ ++ MQ
Sbjct: 186 YRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTA-VAGLVSYPFDTVRRRMM-MQSGR 243
Query: 241 QG-KYPYTGSMDCAMKTLKAGGPFKFYTG 268
+G YTG++DC K K GP F+ G
Sbjct: 244 KGADIMYTGTVDCWRKIAKDEGPKAFFKG 272
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 77/184 (41%), Gaps = 14/184 (7%)
Query: 21 NGGASGMLATCVIQPIDMIKVRI--QLGQGSA-------GTVTKTMLKNEGFGAFYKGLS 71
+GGA+G + C + P+D + R+ +G+G+A G + K++G Y+G +
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 72 AGLLRQATYTTARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLAL 131
+ Y A G + T K + D K + + + T A+ V P D
Sbjct: 178 VSVQGIIIYRAAYFGVYD--TAKGM-LPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 234
Query: 132 IRMQADATLPAAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMGMLASYDQ 191
RM + A YT +I DEG A +KGA V+R M +L YD+
Sbjct: 235 RRMMMQSGRKGADIM-YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDE 292
Query: 192 SVEF 195
+F
Sbjct: 293 IKKF 296
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 10/178 (5%)
Query: 102 KPLPLYQKALCGLTAGAIGASVGSPADLALIRMQA-DATLPAAQRRNYTNAFQALYRIVA 160
+ L + L G A AI + +P + + +Q A+ + + Y + RI
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 62
Query: 161 DEGVLALWKGAGPTVVR---AMALNMGMLASYDQSVEFFRDACGLSELPTVIGASTVSGF 217
++G L+ W+G V+R ALN Y Q F + + SG
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQI--FLGGVDRHKQFWRYFAGNLASGG 120
Query: 218 FASACSL----PFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPV 271
A A SL P D+ +T++ + +TG +C K K+ G Y GF V
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 178
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 190 DQSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKT--QIQKMQPDAQGKYPYT 247
DQ++ F +D A V+ + P + VK Q+Q + Y
Sbjct: 2 DQALSFLKDFL----------AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYK 51
Query: 248 GSMDCAMKTLKAGGPFKFYTGFPVYCVRIAPHVMMTWIFLNQIQKL 293
G +DC ++ K G F+ G +R P + + F ++ +++
Sbjct: 52 GIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQI 97
>pdb|1NTJ|A Chain A, Model Of Rat Crry Determined By Solution Scattering, Curve
Fitting And Homology Modelling
Length = 320
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 177 RAMALNMGMLASYDQSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKM 236
R + + M DQSV + +A +P I S +G F S F Y +
Sbjct: 98 RLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQC 157
Query: 237 QPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRI----APHV 280
DA+GK + + ++ G ++G P C+ + PHV
Sbjct: 158 NTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHV 205
>pdb|2XRB|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
pdb|2XRD|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
Length = 290
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 177 RAMALNMGMLASYDQSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKM 236
R + + M DQSV + +A +P I S +G F S F Y +
Sbjct: 131 RLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQC 190
Query: 237 QPDAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRI----APHV 280
DA+GK + + ++ G ++G P C+ + PHV
Sbjct: 191 NTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHV 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,590,488
Number of Sequences: 62578
Number of extensions: 343156
Number of successful extensions: 870
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 10
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)