Query 022322
Match_columns 299
No_of_seqs 148 out of 1769
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 03:36:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 6.6E-58 2.3E-62 392.2 25.8 279 13-294 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.2E-57 7.4E-62 389.9 24.8 270 17-295 3-287 (303)
3 1okc_A ADP, ATP carrier protei 100.0 5.2E-37 1.8E-41 262.5 19.5 192 104-295 5-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 1.7E-36 5.7E-41 260.0 16.0 187 109-296 4-194 (303)
5 3tgu_G UQCRQ, mitochondrial ub 69.9 5.6 0.00019 25.8 3.7 38 260-297 32-69 (81)
6 1pp9_G Ubiquinol-cytochrome C 64.6 12 0.00042 24.2 4.5 47 242-296 22-68 (81)
7 3cx5_H Cytochrome B-C1 complex 55.6 14 0.00049 24.6 3.7 37 260-296 42-78 (93)
8 3tgu_G UQCRQ, mitochondrial ub 34.7 69 0.0024 20.6 4.4 38 163-200 33-70 (81)
9 3f2e_A SIRV coat protein; four 33.3 92 0.0031 19.7 6.0 35 145-179 5-43 (100)
10 1pp9_G Ubiquinol-cytochrome C 24.4 1.5E+02 0.005 19.1 5.1 39 162-200 32-70 (81)
11 2acm_A Mucin-1; auto-catalytic 24.4 14 0.00046 22.2 -0.3 20 247-266 40-59 (66)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6.6e-58 Score=392.22 Aligned_cols=279 Identities=20% Similarity=0.291 Sum_probs=241.2
Q ss_pred CCchhHHHHHhHHhhhhhhhhchhhHHHHHHHhCC-----------CChhHHHHHHHhhhchhhhhcchhHHHHHHHhhh
Q 022322 13 WPTVKPFVNGGASGMLATCVIQPIDMIKVRIQLGQ-----------GSAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYT 81 (299)
Q Consensus 13 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~-----------~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~ 81 (299)
++.+..+++|++|++++.+++||+|++|+|+|++. .+..+++++|+++||++|||||+.|++++.+++.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45678999999999999999999999999999863 5788999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHhhcCCCCCC---chHHHHHHHHHHHHHHhhhcChHHHHHHHHHhccCCchhhcCCcccHHHHHHHH
Q 022322 82 TARLGSFRILTNKAIEANDGKPL---PLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRI 158 (299)
Q Consensus 82 ~~~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~a~~~~~~i~~P~e~vk~r~q~~~~~~~~~~~~~~~~~~~~~~i 158 (299)
+++|.+||.+++.+.+..+.... +....+++|++|++++.++++|+|+||+|+|++.... .....|.+++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-AAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-TTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-CcCcCCCCHHHHHHHH
Confidence 99999999999965432222211 2456789999999999999999999999999975422 2245789999999999
Q ss_pred HHhhhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhHhhhcccHHHHHHHHHhcCC
Q 022322 159 VADEGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQP 238 (299)
Q Consensus 159 ~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvi~~r~q~~~~ 238 (299)
+++||++|||||+.|++++++|.++++|.+||.+++.+.+.. ..+....+++|++||++++++++|+||||+|||.+..
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~ 242 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG 242 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999775543 3456677889999999999999999999999999865
Q ss_pred CCCCCCCCCCHHHHHHHHHHccccchhccchhhhHHhHhhhHHHHHHHHHHHHHHH
Q 022322 239 DAQGKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRIAPHVMMTWIFLNQIQKLE 294 (299)
Q Consensus 239 ~~~~~~~y~~~~~~~~~i~~~eG~~~l~rG~~~~~~~~~~~~~i~~~~ye~~~~~~ 294 (299)
.......|.++++|+++|+++||++|||||+.++++|. +..+++|.+||.+++.+
T Consensus 243 ~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 243 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp CCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 43344579999999999999999999999999999996 56889999999998754
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.2e-57 Score=389.86 Aligned_cols=270 Identities=27% Similarity=0.473 Sum_probs=244.5
Q ss_pred hHHHHHhHHhhhhhhhhchhhHHHHHHHhCC--------------CChhHHHHHHHhhhchhhhhcchhHHHHHHHhhhh
Q 022322 17 KPFVNGGASGMLATCVIQPIDMIKVRIQLGQ--------------GSAGTVTKTMLKNEGFGAFYKGLSAGLLRQATYTT 82 (299)
Q Consensus 17 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~--------------~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~ 82 (299)
.++++|++|++++.+++||+|++|+|+|++. .+..+++++|+++||++|||||+.|++++.+++.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999864 46889999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHhhhcChHHHHHHHHHhccCCchhhcCCcccHHHHHHHHHHhh
Q 022322 83 ARLGSFRILTNKAIEANDGKPLPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLPAAQRRNYTNAFQALYRIVADE 162 (299)
Q Consensus 83 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~e~vk~r~q~~~~~~~~~~~~~~~~~~~~~~i~~~~ 162 (299)
++|.+||.+++.+.+..+ ..+....+++|++||+++.++++|+|++|+|+|++... .....|.+.++++++++++|
T Consensus 83 i~f~~ye~~k~~~~~~~~--~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~e 158 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIAREE 158 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHhc
Confidence 999999999998864322 36677889999999999999999999999999997642 12357899999999999999
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHHhHhhhcccHHHHHHHHHhcCCCCC
Q 022322 163 GVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDACG-LSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQ 241 (299)
Q Consensus 163 G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~~~~~~t~P~dvi~~r~q~~~~~~~ 241 (299)
|+++||||+.|++++++|.++++|.+||.+++.+.+... .++....+++|++||++++++++|+|+||+|||.+..
T Consensus 159 G~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~--- 235 (303)
T 2lck_A 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL--- 235 (303)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---
T ss_pred ChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---
Confidence 999999999999999999999999999999998866543 3456678899999999999999999999999999753
Q ss_pred CCCCCCCHHHHHHHHHHccccchhccchhhhHHhHhhhHHHHHHHHHHHHHHHH
Q 022322 242 GKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRIAPHVMMTWIFLNQIQKLEK 295 (299)
Q Consensus 242 ~~~~y~~~~~~~~~i~~~eG~~~l~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~ 295 (299)
.+|.++++|+++|+++||++|||||+.++++|.+|..+++|.+||.+++.+.
T Consensus 236 --~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 236 --GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp --SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred --cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2489999999999999999999999999999999999999999999998653
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=5.2e-37 Score=262.52 Aligned_cols=192 Identities=18% Similarity=0.304 Sum_probs=167.0
Q ss_pred CchHHHHHHHHHHHHHHhhhcChHHHHHHHHHhccCCc-hhhcCCcccHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHH
Q 022322 104 LPLYQKALCGLTAGAIGASVGSPADLALIRMQADATLP-AAQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALN 182 (299)
Q Consensus 104 ~~~~~~~~~g~~a~~~~~~i~~P~e~vk~r~q~~~~~~-~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~ 182 (299)
.+....+++|++||+++.++++|+|++|+|+|++.... ......|+++++++++++++||+++||||+.+.+++++|.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 34567899999999999999999999999999986421 12235789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCC----chhHHHHHHHHHHhHhhhcccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHH
Q 022322 183 MGMLASYDQSVEFFRDACG-LSE----LPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTL 257 (299)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~-~~~----~~~~~~~~~~a~~~~~~~t~P~dvi~~r~q~~~~~~~~~~~y~~~~~~~~~i~ 257 (299)
+++|.+||.+++.+.+..+ .++ ....+++|++||+++.++++|+|+||+|||.+.........|.++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 9999999999996544322 222 24578899999999999999999999999998654334567899999999999
Q ss_pred HccccchhccchhhhHHhHhhhHHHHHHHHHHHHHHHH
Q 022322 258 KAGGPFKFYTGFPVYCVRIAPHVMMTWIFLNQIQKLEK 295 (299)
Q Consensus 258 ~~eG~~~l~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~ 295 (299)
++||++|||||+.+++++.+|..++.|.+||.+++.+.
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.7e-36 Score=260.01 Aligned_cols=187 Identities=21% Similarity=0.264 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHhhhcChHHHHHHHHHhccCCch----hhcCCcccHHHHHHHHHHhhhhhhhhcchhhHHHHHHHHHHH
Q 022322 109 KALCGLTAGAIGASVGSPADLALIRMQADATLPA----AQRRNYTNAFQALYRIVADEGVLALWKGAGPTVVRAMALNMG 184 (299)
Q Consensus 109 ~~~~g~~a~~~~~~i~~P~e~vk~r~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 184 (299)
.+++|++|++++.++++|+|++|+|+|++..... .....|+++++++++++++||+++||||+.+.+++.+|.+++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999764221 123568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHhHhhhcccHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHccccch
Q 022322 185 MLASYDQSVEFFRDACGLSELPTVIGASTVSGFFASACSLPFDYVKTQIQKMQPDAQGKYPYTGSMDCAMKTLKAGGPFK 264 (299)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~t~P~dvi~~r~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~ 264 (299)
+|.+||.+++.+.+..+..+....+++|++||+++.++++|+|+||+|+|.+... ....+|.++++++++|+++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-GGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-CCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-CCCCCCCCHHHHHHHHHHhcChhh
Confidence 9999999999886543335567788999999999999999999999999998653 234568999999999999999999
Q ss_pred hccchhhhHHhHhhhHHHHHHHHHHHHHHHHH
Q 022322 265 FYTGFPVYCVRIAPHVMMTWIFLNQIQKLEKK 296 (299)
Q Consensus 265 l~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~~ 296 (299)
||||+.+++++.+|..++.|.+||.+++.+.+
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999997754
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=69.91 E-value=5.6 Score=25.81 Aligned_cols=38 Identities=8% Similarity=0.185 Sum_probs=32.2
Q ss_pred cccchhccchhhhHHhHhhhHHHHHHHHHHHHHHHHHc
Q 022322 260 GGPFKFYTGFPVYCVRIAPHVMMTWIFLNQIQKLEKKV 297 (299)
Q Consensus 260 eG~~~l~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~~~ 297 (299)
.|+...+|-+..+++.++|..++.+.+|+...+.-+.+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888999999999999999999988876543
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=64.55 E-value=12 Score=24.20 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHccccchhccchhhhHHhHhhhHHHHHHHHHHHHHHHHH
Q 022322 242 GKYPYTGSMDCAMKTLKAGGPFKFYTGFPVYCVRIAPHVMMTWIFLNQIQKLEKK 296 (299)
Q Consensus 242 ~~~~y~~~~~~~~~i~~~eG~~~l~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~~ 296 (299)
.++...+.++ .|+...+|-+..+++.++|+.++.+.+|+...+.-+.
T Consensus 22 ~Qr~~~g~~~--------~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~ 68 (81)
T 1pp9_G 22 EQRAFPHYFS--------KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (81)
T ss_dssp TBCSSTTHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchHh--------hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHH
Confidence 4455556554 6677788888899999999999999999998886654
No 7
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=55.65 E-value=14 Score=24.56 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=32.2
Q ss_pred cccchhccchhhhHHhHhhhHHHHHHHHHHHHHHHHH
Q 022322 260 GGPFKFYTGFPVYCVRIAPHVMMTWIFLNQIQKLEKK 296 (299)
Q Consensus 260 eG~~~l~rG~~~~~~~~~~~~~i~~~~ye~~~~~~~~ 296 (299)
+|+...+|-+..+++.++|...+.+.+|+...+.-+.
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~ 78 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEF 78 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHH
Confidence 6788888999999999999999999999988876543
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=34.75 E-value=69 Score=20.62 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=27.7
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022322 163 GVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDAC 200 (299)
Q Consensus 163 G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (299)
|+...+|-+...++..+|..++.+.+|+...+..+...
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~ 70 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLK 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566778899999999999998888765544
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=33.27 E-value=92 Score=19.66 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=25.0
Q ss_pred cCCcccHHHHHHHHHHhhhhh----hhhcchhhHHHHHH
Q 022322 145 RRNYTNAFQALYRIVADEGVL----ALWKGAGPTVVRAM 179 (299)
Q Consensus 145 ~~~~~~~~~~~~~i~~~~G~~----~ly~G~~~~~~~~~ 179 (299)
.+++.++-+.+..++.+-|+. .+|+|+...+.|..
T Consensus 5 vpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 5 VPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp ---CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 357888888888888888864 57888887777654
No 10
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=24.39 E-value=1.5e+02 Score=19.07 Aligned_cols=39 Identities=10% Similarity=0.219 Sum_probs=28.8
Q ss_pred hhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022322 162 EGVLALWKGAGPTVVRAMALNMGMLASYDQSVEFFRDAC 200 (299)
Q Consensus 162 ~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (299)
+|+...+|-+...++..+|..++.+.+|+...+..+...
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~ 70 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHh
Confidence 344555666677777889999999999998887765544
No 11
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=24.37 E-value=14 Score=22.16 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHccccchhc
Q 022322 247 TGSMDCAMKTLKAGGPFKFY 266 (299)
Q Consensus 247 ~~~~~~~~~i~~~eG~~~l~ 266 (299)
+++.+.+.+||+++|+.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788999999999998876
Done!