Query 022323
Match_columns 299
No_of_seqs 44 out of 46
Neff 2.6
Searched_HMMs 46136
Date Fri Mar 29 02:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03165 chaperone protein dna 98.4 2.2E-08 4.9E-13 82.9 -1.1 75 203-287 11-87 (111)
2 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.2 0.00017 3.6E-09 53.5 1.8 48 234-288 1-54 (66)
3 KOG2813 Predicted molecular ch 96.7 0.00065 1.4E-08 66.5 1.5 42 227-290 230-271 (406)
4 PF00684 DnaJ_CXXCXGXG: DnaJ c 96.6 0.0016 3.4E-08 48.4 2.6 39 229-285 13-66 (66)
5 PRK14296 chaperone protein Dna 96.5 0.00075 1.6E-08 64.4 0.2 34 224-257 142-181 (372)
6 PRK14285 chaperone protein Dna 96.4 0.0013 2.9E-08 62.5 1.1 32 224-255 139-176 (365)
7 PRK14286 chaperone protein Dna 96.3 0.0011 2.4E-08 63.2 0.4 34 224-257 143-182 (372)
8 PRK14282 chaperone protein Dna 96.3 0.0013 2.9E-08 62.4 1.0 34 224-257 145-184 (369)
9 TIGR02349 DnaJ_bact chaperone 96.3 0.0013 2.8E-08 61.6 0.8 34 224-257 136-175 (354)
10 PTZ00037 DnaJ_C chaperone prot 96.3 0.0015 3.2E-08 64.0 1.1 34 224-257 143-181 (421)
11 COG0484 DnaJ DnaJ-class molecu 96.3 0.0013 2.9E-08 64.2 0.7 35 224-258 135-175 (371)
12 PRK14301 chaperone protein Dna 96.2 0.0012 2.7E-08 62.9 0.2 33 224-256 137-175 (373)
13 PRK14279 chaperone protein Dna 96.2 0.0014 3E-08 63.0 0.5 33 224-256 166-204 (392)
14 PRK10767 chaperone protein Dna 96.2 0.0018 3.9E-08 61.3 0.9 33 224-256 135-173 (371)
15 PRK14276 chaperone protein Dna 96.2 0.0017 3.8E-08 61.9 0.8 34 224-257 139-178 (380)
16 PRK14284 chaperone protein Dna 96.1 0.003 6.6E-08 60.5 2.2 32 224-255 151-188 (391)
17 PRK14296 chaperone protein Dna 96.1 0.0033 7.1E-08 60.1 2.3 37 231-286 166-217 (372)
18 PRK14286 chaperone protein Dna 96.1 0.0033 7.1E-08 60.0 2.1 38 231-287 167-215 (372)
19 PRK14298 chaperone protein Dna 96.1 0.0019 4.2E-08 61.8 0.6 34 224-257 134-173 (377)
20 PRK14300 chaperone protein Dna 96.0 0.0033 7.2E-08 59.9 2.0 32 224-255 138-175 (372)
21 PRK14284 chaperone protein Dna 96.0 0.0022 4.7E-08 61.5 0.7 39 230-287 174-223 (391)
22 KOG2813 Predicted molecular ch 96.0 0.0048 1E-07 60.7 3.0 23 231-253 187-209 (406)
23 PRK10767 chaperone protein Dna 96.0 0.0042 9.2E-08 58.9 2.5 39 230-287 158-207 (371)
24 COG1107 Archaea-specific RecJ- 96.0 0.0038 8.2E-08 65.0 2.4 59 231-289 2-82 (715)
25 PRK14278 chaperone protein Dna 96.0 0.004 8.7E-08 59.6 2.2 34 224-257 132-171 (378)
26 PRK14285 chaperone protein Dna 96.0 0.0043 9.3E-08 59.1 2.4 37 231-286 163-210 (365)
27 PRK14288 chaperone protein Dna 96.0 0.0023 5E-08 61.0 0.5 33 224-256 133-170 (369)
28 PRK14294 chaperone protein Dna 95.9 0.0027 5.9E-08 60.2 0.7 32 224-255 137-174 (366)
29 PRK14301 chaperone protein Dna 95.9 0.0047 1E-07 59.0 2.2 38 231-287 161-209 (373)
30 PRK14279 chaperone protein Dna 95.9 0.0045 9.8E-08 59.6 2.1 39 230-287 189-238 (392)
31 PRK14278 chaperone protein Dna 95.8 0.0026 5.7E-08 60.8 0.5 38 231-287 156-208 (378)
32 PRK14288 chaperone protein Dna 95.8 0.0055 1.2E-07 58.5 2.6 39 230-287 155-204 (369)
33 PRK14280 chaperone protein Dna 95.8 0.0048 1E-07 58.9 2.1 34 224-257 136-175 (376)
34 PRK14293 chaperone protein Dna 95.8 0.0029 6.3E-08 60.2 0.6 33 224-256 136-174 (374)
35 PRK14287 chaperone protein Dna 95.8 0.0034 7.4E-08 59.9 1.1 33 224-256 131-169 (371)
36 PRK14280 chaperone protein Dna 95.8 0.0026 5.7E-08 60.7 0.3 39 230-287 159-212 (376)
37 PRK14289 chaperone protein Dna 95.8 0.0029 6.2E-08 60.4 0.5 62 224-287 147-223 (386)
38 PRK14295 chaperone protein Dna 95.8 0.0026 5.6E-08 61.2 0.1 34 224-257 159-198 (389)
39 PRK14276 chaperone protein Dna 95.8 0.0053 1.1E-07 58.7 2.1 39 230-287 162-215 (380)
40 PRK14282 chaperone protein Dna 95.7 0.0064 1.4E-07 57.8 2.6 37 230-285 168-219 (369)
41 PRK14291 chaperone protein Dna 95.7 0.0065 1.4E-07 58.1 2.4 33 224-256 149-187 (382)
42 PRK14297 chaperone protein Dna 95.6 0.0069 1.5E-07 57.8 2.3 34 224-257 141-180 (380)
43 PRK14297 chaperone protein Dna 95.6 0.0038 8.1E-08 59.6 0.4 36 231-285 165-215 (380)
44 PRK14277 chaperone protein Dna 95.5 0.0077 1.7E-07 57.7 2.3 34 224-257 148-187 (386)
45 PRK14294 chaperone protein Dna 95.5 0.0084 1.8E-07 57.0 2.4 38 231-287 161-209 (366)
46 PRK14277 chaperone protein Dna 95.4 0.0042 9.1E-08 59.5 0.2 39 230-287 171-224 (386)
47 PRK14281 chaperone protein Dna 95.4 0.0045 9.8E-08 59.6 0.3 34 224-257 156-194 (397)
48 PTZ00037 DnaJ_C chaperone prot 95.4 0.01 2.2E-07 58.2 2.6 41 230-287 165-220 (421)
49 PRK14293 chaperone protein Dna 95.4 0.0095 2E-07 56.8 2.4 37 231-286 160-211 (374)
50 TIGR02349 DnaJ_bact chaperone 95.4 0.0098 2.1E-07 55.9 2.4 38 231-287 160-212 (354)
51 PRK14291 chaperone protein Dna 95.3 0.0055 1.2E-07 58.6 0.6 38 230-287 172-220 (382)
52 PRK14295 chaperone protein Dna 95.2 0.01 2.2E-07 57.1 2.1 38 231-287 183-231 (389)
53 COG0484 DnaJ DnaJ-class molecu 95.2 0.013 2.8E-07 57.5 2.6 39 230-287 158-209 (371)
54 PRK14300 chaperone protein Dna 95.1 0.0068 1.5E-07 57.8 0.6 39 230-287 161-210 (372)
55 PRK14281 chaperone protein Dna 95.0 0.015 3.2E-07 56.1 2.5 39 230-287 178-231 (397)
56 PRK14292 chaperone protein Dna 95.0 0.014 3.1E-07 55.3 2.2 31 225-255 133-170 (371)
57 PRK14290 chaperone protein Dna 94.9 0.011 2.3E-07 56.3 1.3 34 224-257 142-180 (365)
58 PRK14283 chaperone protein Dna 94.9 0.0082 1.8E-07 57.3 0.4 34 224-257 139-178 (378)
59 PRK14287 chaperone protein Dna 94.8 0.014 3E-07 55.8 1.7 38 230-286 154-206 (371)
60 PRK14283 chaperone protein Dna 94.8 0.018 3.8E-07 55.1 2.4 25 230-254 162-201 (378)
61 PLN03165 chaperone protein dna 93.9 0.021 4.6E-07 47.7 0.7 26 229-254 73-98 (111)
62 PRK14292 chaperone protein Dna 93.9 0.019 4.2E-07 54.4 0.5 40 229-287 155-209 (371)
63 KOG2824 Glutaredoxin-related p 93.8 0.044 9.5E-07 52.4 2.6 53 228-283 226-281 (281)
64 TIGR02642 phage_xxxx uncharact 93.3 0.07 1.5E-06 48.0 3.0 26 231-256 99-129 (186)
65 TIGR02642 phage_xxxx uncharact 92.7 0.063 1.4E-06 48.3 1.8 32 242-290 99-130 (186)
66 cd03031 GRX_GRX_like Glutaredo 91.4 0.16 3.5E-06 43.7 2.8 48 230-287 98-145 (147)
67 COG1107 Archaea-specific RecJ- 87.7 0.27 5.8E-06 51.8 1.5 45 244-288 55-108 (715)
68 PRK14290 chaperone protein Dna 85.6 0.24 5.2E-06 47.2 -0.1 39 230-287 164-217 (365)
69 KOG0712 Molecular chaperone (D 85.3 0.55 1.2E-05 45.9 2.2 56 229-285 125-196 (337)
70 PRK14298 chaperone protein Dna 83.7 0.38 8.1E-06 46.4 0.3 38 231-287 158-210 (377)
71 PRK14289 chaperone protein Dna 83.0 0.45 9.8E-06 45.7 0.5 26 230-255 196-224 (386)
72 KOG0715 Molecular chaperone (D 76.2 0.98 2.1E-05 42.5 0.4 11 278-288 220-230 (288)
73 KOG2090 Metalloendopeptidase f 71.3 4.7 0.0001 43.0 3.9 56 68-136 299-354 (704)
74 KOG3088 Secretory carrier memb 71.0 13 0.00028 36.6 6.6 38 124-161 96-144 (313)
75 KOG0712 Molecular chaperone (D 63.9 2.8 6E-05 41.2 0.6 72 183-255 110-199 (337)
76 PF07295 DUF1451: Protein of u 63.7 8.5 0.00018 33.5 3.4 50 221-285 87-140 (146)
77 PF06677 Auto_anti-p27: Sjogre 61.8 4.7 0.0001 28.6 1.3 19 275-298 17-35 (41)
78 PF08271 TF_Zn_Ribbon: TFIIB z 61.5 5.5 0.00012 27.4 1.6 7 233-239 2-8 (43)
79 TIGR00595 priA primosomal prot 60.7 6.1 0.00013 39.6 2.3 61 213-284 181-262 (505)
80 PRK05580 primosome assembly pr 59.3 6.5 0.00014 40.8 2.3 61 213-284 349-430 (679)
81 PF04216 FdhE: Protein involve 54.9 5.5 0.00012 36.8 0.9 75 179-254 117-209 (290)
82 PRK14873 primosome assembly pr 51.6 10 0.00022 39.9 2.2 59 215-284 354-431 (665)
83 TIGR00630 uvra excinuclease AB 50.9 7.4 0.00016 42.4 1.2 20 73-92 427-446 (924)
84 PF14257 DUF4349: Domain of un 50.4 29 0.00062 31.4 4.7 37 138-175 213-249 (262)
85 TIGR01562 FdhE formate dehydro 49.7 14 0.00031 35.6 2.8 126 167-296 117-271 (305)
86 PF08792 A2L_zn_ribbon: A2L zi 49.1 8.7 0.00019 26.0 0.9 10 231-240 3-12 (33)
87 PF07092 DUF1356: Protein of u 47.6 9.3 0.0002 36.1 1.2 20 235-254 31-50 (238)
88 PF13901 DUF4206: Domain of un 46.4 21 0.00046 31.9 3.2 32 227-262 138-169 (202)
89 PF13453 zf-TFIIB: Transcripti 45.9 11 0.00024 25.7 1.0 28 244-284 1-28 (41)
90 COG1198 PriA Primosomal protei 45.2 15 0.00032 39.4 2.3 42 232-284 436-484 (730)
91 PF04170 NlpE: NlpE N-terminal 44.7 6.7 0.00015 30.6 -0.2 18 240-257 2-19 (87)
92 PRK11032 hypothetical protein; 43.4 27 0.00058 31.1 3.3 52 219-285 97-152 (160)
93 PF13719 zinc_ribbon_5: zinc-r 42.2 13 0.00027 25.3 0.9 30 243-282 3-32 (37)
94 TIGR02098 MJ0042_CXXC MJ0042 f 40.4 14 0.00031 24.3 0.9 32 243-284 3-34 (38)
95 TIGR03007 pepcterm_ChnLen poly 40.1 2.5E+02 0.0054 27.4 9.6 67 155-223 418-498 (498)
96 TIGR00757 RNaseEG ribonuclease 40.1 5.2 0.00011 39.7 -1.8 62 178-244 327-403 (414)
97 PF00831 Ribosomal_L29: Riboso 39.7 45 0.00097 24.6 3.5 34 75-115 1-34 (58)
98 COG1405 SUA7 Transcription ini 38.6 14 0.0003 35.3 0.9 17 232-248 2-26 (285)
99 PRK14810 formamidopyrimidine-D 37.6 17 0.00037 33.7 1.3 33 142-188 192-224 (272)
100 PRK03564 formate dehydrogenase 37.6 24 0.00051 34.3 2.2 86 168-254 121-224 (309)
101 TIGR01010 BexC_CtrB_KpsE polys 36.7 1.8E+02 0.0039 27.4 7.8 37 82-118 279-315 (362)
102 PRK10445 endonuclease VIII; Pr 36.6 18 0.0004 33.4 1.3 25 142-166 189-213 (263)
103 TIGR03655 anti_R_Lar restricti 36.4 20 0.00043 25.7 1.1 11 277-287 28-38 (53)
104 PRK00349 uvrA excinuclease ABC 35.0 24 0.00052 38.7 2.0 20 73-92 429-448 (943)
105 PHA01745 hypothetical protein 34.7 34 0.00074 33.7 2.8 37 135-172 102-138 (306)
106 PRK00349 uvrA excinuclease ABC 34.0 19 0.00041 39.4 1.1 12 274-285 760-771 (943)
107 PRK11712 ribonuclease G; Provi 33.9 7.3 0.00016 39.7 -1.9 62 178-244 339-415 (489)
108 COG2976 Uncharacterized protei 33.6 22 0.00047 33.3 1.2 73 156-228 24-107 (207)
109 COG5041 SKB2 Casein kinase II, 31.8 26 0.00057 33.4 1.5 23 223-245 113-137 (242)
110 PF05237 MoeZ_MoeB: MoeZ/MoeB 31.7 39 0.00085 25.9 2.2 40 184-227 6-45 (84)
111 TIGR00209 galT_1 galactose-1-p 31.1 87 0.0019 30.4 4.9 80 67-155 108-193 (347)
112 PRK13945 formamidopyrimidine-D 31.1 25 0.00055 32.7 1.3 34 141-188 201-234 (282)
113 PRK00423 tfb transcription ini 30.6 21 0.00045 33.6 0.6 22 231-255 11-40 (310)
114 PRK00464 nrdR transcriptional 29.6 34 0.00074 30.1 1.7 10 276-285 29-38 (154)
115 TIGR00630 uvra excinuclease AB 29.4 35 0.00076 37.4 2.1 32 244-285 738-769 (924)
116 PF03589 Antiterm: Antitermina 29.4 21 0.00046 29.0 0.4 37 244-286 7-43 (95)
117 PLN02643 ADP-glucose phosphory 28.9 91 0.002 30.1 4.6 82 67-155 110-197 (336)
118 PRK00635 excinuclease ABC subu 28.9 27 0.00059 41.1 1.3 19 233-251 1609-1639(1809)
119 PF05283 MGC-24: Multi-glycosy 27.2 28 0.0006 31.8 0.8 22 198-221 156-177 (186)
120 PRK04406 hypothetical protein; 27.0 2.4E+02 0.0052 22.1 5.8 34 82-117 26-59 (75)
121 PRK01103 formamidopyrimidine/5 26.9 36 0.00079 31.4 1.5 33 142-188 193-225 (274)
122 PRK00295 hypothetical protein; 26.0 2.5E+02 0.0054 21.5 5.7 38 78-117 16-53 (68)
123 PRK14811 formamidopyrimidine-D 25.9 36 0.00077 31.7 1.3 22 142-163 181-202 (269)
124 TIGR00757 RNaseEG ribonuclease 25.5 33 0.00072 34.2 1.0 37 249-290 369-405 (414)
125 PF03276 Gag_spuma: Spumavirus 25.3 2.5E+02 0.0055 30.0 7.3 44 72-115 124-179 (582)
126 PHA03029 hypothetical protein; 25.0 55 0.0012 27.1 2.1 19 84-102 39-57 (92)
127 cd02432 Nodulin-21_like_1 Nodu 24.8 26 0.00056 31.9 0.2 34 137-171 153-187 (218)
128 PHA02683 ORF078 thioredoxin-li 24.6 58 0.0013 26.4 2.1 40 68-107 28-73 (75)
129 PRK02793 phi X174 lysis protei 24.5 2.9E+02 0.0064 21.3 5.9 37 79-117 20-56 (72)
130 PRK02119 hypothetical protein; 24.4 3.4E+02 0.0074 21.1 6.5 38 78-117 20-57 (73)
131 TIGR00577 fpg formamidopyrimid 24.2 41 0.00089 31.2 1.4 33 142-188 193-225 (272)
132 PRK11712 ribonuclease G; Provi 24.2 39 0.00084 34.6 1.3 35 250-289 382-416 (489)
133 PF07092 DUF1356: Protein of u 23.7 32 0.0007 32.6 0.6 17 229-245 36-52 (238)
134 PRK00846 hypothetical protein; 23.3 3.7E+02 0.0081 21.5 6.4 39 78-118 24-62 (77)
135 PF14353 CpXC: CpXC protein 23.0 43 0.00093 27.2 1.1 43 243-288 2-51 (128)
136 PF05277 DUF726: Protein of un 22.7 49 0.0011 32.5 1.6 44 148-191 3-54 (345)
137 PRK00306 50S ribosomal protein 22.4 1.9E+02 0.004 21.8 4.3 32 75-113 3-34 (66)
138 KOG2802 Membrane protein HUEL 22.3 1.3E+02 0.0027 31.4 4.4 37 75-112 443-489 (503)
139 COG5349 Uncharacterized protei 22.2 41 0.00089 29.5 0.9 23 268-291 14-36 (126)
140 COG4044 Uncharacterized protei 21.9 61 0.0013 31.1 2.0 28 169-196 108-139 (247)
141 PF01486 K-box: K-box region; 21.8 1.8E+02 0.0038 23.0 4.3 37 74-112 47-85 (100)
142 PF13543 KSR1-SAM: SAM like do 21.7 1.2E+02 0.0026 26.4 3.6 34 72-109 90-123 (129)
143 PF13717 zinc_ribbon_4: zinc-r 21.3 48 0.001 22.5 0.9 30 243-282 3-32 (36)
144 PRK00736 hypothetical protein; 21.0 3.7E+02 0.008 20.5 5.8 38 78-117 16-53 (68)
145 PF02185 HR1: Hr1 repeat; Int 20.8 1.7E+02 0.0037 21.7 3.9 29 82-110 34-62 (70)
146 PF10146 zf-C4H2: Zinc finger- 20.5 2.4E+02 0.0051 26.4 5.5 36 85-120 71-107 (230)
147 PRK11720 galactose-1-phosphate 20.5 66 0.0014 31.2 2.0 35 64-98 103-139 (346)
148 PF12794 MscS_TM: Mechanosensi 20.5 4.1E+02 0.0089 25.5 7.2 12 141-152 293-304 (340)
149 PF05283 MGC-24: Multi-glycosy 20.5 43 0.00093 30.6 0.7 19 155-173 160-178 (186)
150 PF06698 DUF1192: Protein of u 20.4 1.3E+02 0.0028 23.1 3.2 36 73-115 13-48 (59)
151 PF13771 zf-HC5HC2H: PHD-like 20.4 61 0.0013 24.4 1.4 27 224-252 29-56 (90)
152 CHL00154 rpl29 ribosomal prote 20.3 2E+02 0.0044 22.1 4.2 33 75-114 6-38 (67)
153 TIGR03147 cyt_nit_nrfF cytochr 20.3 78 0.0017 27.4 2.1 31 132-162 86-116 (126)
154 cd00427 Ribosomal_L29_HIP Ribo 20.2 1.9E+02 0.0041 21.2 3.9 32 76-114 1-32 (57)
No 1
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.45 E-value=2.2e-08 Score=82.89 Aligned_cols=75 Identities=24% Similarity=0.455 Sum_probs=52.8
Q ss_pred ceeeccCCchhH-HHHHHHHHhhhh-hhHhhcccccccCccccccccccCCceecccCCccCCCCCCCCCCCCCcccCCC
Q 022323 203 IVASFSGGAVGV-ISALMLIEANNV-EQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPN 280 (299)
Q Consensus 203 IVASFsGGAVGV-isaLmvvEinnv-kqQEkkRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpN 280 (299)
|.|...|=|||. |-.||+-+++|. |+++...|..|+|+|+-.|.+|.|+|.+.... . + .. .....|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~--~-g---~~----q~~~~C~~ 80 (111)
T PLN03165 11 ISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVEL--G-G---GE----KEVSKCIN 80 (111)
T ss_pred hhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEe--C-C---cE----EEEEECCC
Confidence 334444445554 567889999988 77888999999999999999999999885432 0 0 00 02556777
Q ss_pred CCCCCcc
Q 022323 281 CSGDVPE 287 (299)
Q Consensus 281 CSGaGKv 287 (299)
|.|.|+.
T Consensus 81 C~G~Gk~ 87 (111)
T PLN03165 81 CDGAGSL 87 (111)
T ss_pred CCCccee
Confidence 7777764
No 2
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.21 E-value=0.00017 Score=53.54 Aligned_cols=48 Identities=29% Similarity=0.704 Sum_probs=31.3
Q ss_pred cccccCccc------cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCccc
Q 022323 234 CKYCHGSGY------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPEL 288 (299)
Q Consensus 234 CkYC~GTGY------L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKvl 288 (299)
|..|+|+|. -.|..|.|+|.+..... .+.+ .--....|+.|.|+|+++
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~--~~~~-----~~~~~~~C~~C~G~G~~i 54 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQ--TPGG-----VFQMQQTCPKCGGTGKII 54 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEE--SSST-----TEEEEEE-TTTSSSSEE-
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEe--CCCe-----EEEEEEECCCCcceeeEE
Confidence 788999998 67999999999866532 1110 011366799999999987
No 3
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.00065 Score=66.53 Aligned_cols=42 Identities=31% Similarity=0.741 Sum_probs=32.9
Q ss_pred hhHhhcccccccCccccccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCccccc
Q 022323 227 EQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELPL 290 (299)
Q Consensus 227 kqQEkkRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKvlp~ 290 (299)
|.....+|.-|+|.|.+.|.+|+|.| +..|..|+|+|+++--
T Consensus 230 k~gt~~~C~~C~G~G~~~C~tC~grG----------------------~k~C~TC~gtgsll~~ 271 (406)
T KOG2813|consen 230 KIGTHDLCYMCHGRGIKECHTCKGRG----------------------KKPCTTCSGTGSLLNY 271 (406)
T ss_pred CCCccchhhhccCCCcccCCcccCCC----------------------CcccccccCccceeee
Confidence 44566778888888888888888877 4569999999998743
No 4
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=96.62 E-value=0.0016 Score=48.40 Aligned_cols=39 Identities=31% Similarity=0.898 Sum_probs=28.3
Q ss_pred HhhcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCC
Q 022323 229 QEKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDV 285 (299)
Q Consensus 229 QEkkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaG 285 (299)
...+.|+.|+|+|+. +|..|.|+|.+. . +..|++|.|.|
T Consensus 13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-----~-------------~~~C~~C~G~g 66 (66)
T PF00684_consen 13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-----E-------------KDPCKTCKGSG 66 (66)
T ss_dssp TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE------T-------------SSB-SSSTTSS
T ss_pred CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-----C-------------CCCCCCCCCcC
Confidence 346789999999986 699999999872 1 56899999986
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.48 E-value=0.00075 Score=64.43 Aligned_cols=34 Identities=29% Similarity=0.598 Sum_probs=27.8
Q ss_pred hhhhhHhhcccccccCcccc------ccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL------ACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL------~CArCSgSGtl~~i 257 (299)
.+++-++...|..|+|+|.- .|..|.|+|.+...
T Consensus 142 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 181 (372)
T PRK14296 142 KIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQ 181 (372)
T ss_pred EEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEE
Confidence 45566788899999999974 59999999987554
No 6
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.35 E-value=0.0013 Score=62.52 Aligned_cols=32 Identities=28% Similarity=0.630 Sum_probs=26.9
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceec
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCL 255 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~ 255 (299)
.+++-.+...|..|+|+|. -.|..|.|+|.+.
T Consensus 139 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 176 (365)
T PRK14285 139 NNINITRNMLCESCLGKKSEKGTSPSICNMCNGSGRVM 176 (365)
T ss_pred EEEEeeecccCCCCCCcccCCCCCCccCCCccCceeEE
Confidence 4667788899999999996 4699999999874
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.33 E-value=0.0011 Score=63.18 Aligned_cols=34 Identities=29% Similarity=0.619 Sum_probs=27.8
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~i 257 (299)
.+++-.+.+.|..|+|+|. -.|..|.|+|.+...
T Consensus 143 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~ 182 (372)
T PRK14286 143 YKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRT 182 (372)
T ss_pred EEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeEEEEEE
Confidence 4566778889999999997 579999999987443
No 8
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.33 E-value=0.0013 Score=62.35 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=27.6
Q ss_pred hhhhhHhhcccccccCcccc------ccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL------ACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL------~CArCSgSGtl~~i 257 (299)
.+++-.+...|.-|+|+|.. .|.+|.|+|.+...
T Consensus 145 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 184 (369)
T PRK14282 145 IPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREE 184 (369)
T ss_pred EEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEE
Confidence 45666788899999999964 69999999987543
No 9
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.31 E-value=0.0013 Score=61.64 Aligned_cols=34 Identities=29% Similarity=0.753 Sum_probs=27.6
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~i 257 (299)
.+++-.+.+.|.-|+|+|. -.|..|.|+|.+...
T Consensus 136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 175 (354)
T TIGR02349 136 KEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQ 175 (354)
T ss_pred EEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEE
Confidence 4566778899999999995 469999999987543
No 10
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=96.30 E-value=0.0015 Score=63.96 Aligned_cols=34 Identities=21% Similarity=0.606 Sum_probs=26.9
Q ss_pred hhhhhHhhcccccccCcccc-----ccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL-----ACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL-----~CArCSgSGtl~~i 257 (299)
.+++-.....|.-|+|+|.. .|..|.|+|.....
T Consensus 143 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~ 181 (421)
T PTZ00037 143 RKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQI 181 (421)
T ss_pred eEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEE
Confidence 45566778899999999964 69999999975443
No 11
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0013 Score=64.24 Aligned_cols=35 Identities=29% Similarity=0.658 Sum_probs=29.3
Q ss_pred hhhhhHhhcccccccCc------cccccccccCCceecccC
Q 022323 224 NNVEQQEKKRCKYCHGS------GYLACARCSSSGVCLSVD 258 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GT------GYL~CArCSgSGtl~~id 258 (299)
.+++-.....|.-|+|+ .-..|.+|.|+|.+...+
T Consensus 135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~ 175 (371)
T COG0484 135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQ 175 (371)
T ss_pred eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEE
Confidence 56777888999999998 578999999999985544
No 12
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.24 E-value=0.0012 Score=62.88 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=26.8
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceecc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLS 256 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~ 256 (299)
.+++-.+...|.-|+|+|. -.|..|.|+|.+..
T Consensus 137 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~ 175 (373)
T PRK14301 137 VTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQ 175 (373)
T ss_pred EEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEE
Confidence 4556677889999999997 46999999998743
No 13
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.23 E-value=0.0014 Score=63.03 Aligned_cols=33 Identities=33% Similarity=0.680 Sum_probs=27.1
Q ss_pred hhhhhHhhcccccccCcccc------ccccccCCceecc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL------ACARCSSSGVCLS 256 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL------~CArCSgSGtl~~ 256 (299)
.+++......|.-|+|+|.. .|..|.|+|.+..
T Consensus 166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~ 204 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISR 204 (392)
T ss_pred EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEE
Confidence 45666788899999999974 5999999998754
No 14
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.17 E-value=0.0018 Score=61.30 Aligned_cols=33 Identities=27% Similarity=0.649 Sum_probs=26.6
Q ss_pred hhhhhHhhcccccccCcccc------ccccccCCceecc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL------ACARCSSSGVCLS 256 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL------~CArCSgSGtl~~ 256 (299)
.+++-.....|.-|+|+|.. .|..|.|+|.+..
T Consensus 135 ~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~ 173 (371)
T PRK10767 135 KEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRM 173 (371)
T ss_pred EEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEE
Confidence 45666788899999999964 7999999998643
No 15
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.16 E-value=0.0017 Score=61.93 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=27.4
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~i 257 (299)
.+++-.+.+.|.-|+|+|. -.|..|.|+|.+...
T Consensus 139 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 178 (380)
T PRK14276 139 KEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVD 178 (380)
T ss_pred EEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEE
Confidence 4556678889999999996 469999999987443
No 16
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.12 E-value=0.003 Score=60.53 Aligned_cols=32 Identities=34% Similarity=0.707 Sum_probs=24.9
Q ss_pred hhhhhHhhcccccccCcccc------ccccccCCceec
Q 022323 224 NNVEQQEKKRCKYCHGSGYL------ACARCSSSGVCL 255 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL------~CArCSgSGtl~ 255 (299)
.+++..+...|.-|+|+|.- .|..|.|+|.+.
T Consensus 151 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~ 188 (391)
T PRK14284 151 KELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVV 188 (391)
T ss_pred EEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEE
Confidence 34555778889999999864 589999999764
No 17
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.10 E-value=0.0033 Score=60.13 Aligned_cols=37 Identities=32% Similarity=0.875 Sum_probs=29.4
Q ss_pred hcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCc
Q 022323 231 KKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVP 286 (299)
Q Consensus 231 kkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGK 286 (299)
.+.|+.|+|+|.. +|..|.|+|.+ .+..|+.|.|.|.
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~ 217 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKI-------------------IKNKCKNCKGKGK 217 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCccee-------------------ecccccCCCCceE
Confidence 4679999999864 79999999976 1456999999884
No 18
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.06 E-value=0.0033 Score=60.03 Aligned_cols=38 Identities=29% Similarity=0.838 Sum_probs=27.7
Q ss_pred hcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
.+.|+.|+|+|.. +|..|.|+|.+. +..|++|.|.|-+
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~~ 215 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-------------------SNPCKTCGGQGLQ 215 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-------------------cccCCCCCCCcEE
Confidence 4678888888865 688888888751 3458888887754
No 19
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.06 E-value=0.0019 Score=61.75 Aligned_cols=34 Identities=24% Similarity=0.731 Sum_probs=27.5
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~i 257 (299)
.+++-.+...|.-|+|+|. -.|..|.|+|.+...
T Consensus 134 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 173 (377)
T PRK14298 134 KDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTT 173 (377)
T ss_pred EEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEE
Confidence 4555677889999999997 579999999987544
No 20
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0033 Score=59.91 Aligned_cols=32 Identities=34% Similarity=0.792 Sum_probs=25.2
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceec
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCL 255 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~ 255 (299)
.+++-.+.+.|..|+|+|. -.|..|.|+|.+.
T Consensus 138 k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~ 175 (372)
T PRK14300 138 KNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATR 175 (372)
T ss_pred EEEEeeeccccCCCCCcccCCCCCCccCCCccCeEEEE
Confidence 3455567788999999996 4689999999874
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.03 E-value=0.0022 Score=61.51 Aligned_cols=39 Identities=33% Similarity=0.761 Sum_probs=32.5
Q ss_pred hhcccccccCccc-----------cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGY-----------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGY-----------L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|+ -+|..|.|+|.+. +..|+.|.|.|.+
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 223 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-------------------TDPCSVCRGQGRI 223 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-------------------CCcCCCCCCccee
Confidence 4688999999998 5899999999751 3469999998854
No 22
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0048 Score=60.66 Aligned_cols=23 Identities=39% Similarity=0.869 Sum_probs=21.1
Q ss_pred hcccccccCccccccccccCCce
Q 022323 231 KKRCKYCHGSGYLACARCSSSGV 253 (299)
Q Consensus 231 kkRCkYC~GTGYL~CArCSgSGt 253 (299)
.+-|..|+|-|...|..|+|+|.
T Consensus 187 v~~ch~c~gRG~~vc~gc~g~G~ 209 (406)
T KOG2813|consen 187 VTFCHACLGRGAMVCHGCSGSGS 209 (406)
T ss_pred hhhhhcccCCCceeccCcCCCCc
Confidence 46799999999999999999993
No 23
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.00 E-value=0.0042 Score=58.85 Aligned_cols=39 Identities=31% Similarity=0.840 Sum_probs=30.7
Q ss_pred hhcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|.. +|..|.|+|.+. +..|+.|.|.|.+
T Consensus 158 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 207 (371)
T PRK10767 158 SPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-------------------KDPCKKCHGQGRV 207 (371)
T ss_pred CCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-------------------CCCCCCCCCCceE
Confidence 34689999999976 599999999761 3469999998854
No 24
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.00 E-value=0.0038 Score=64.95 Aligned_cols=59 Identities=29% Similarity=0.683 Sum_probs=41.3
Q ss_pred hcccccccCccccc-----cccccCCceecccCC--ccC-CCCCC-----CCCCCC---------CcccCCCCCCCCccc
Q 022323 231 KKRCKYCHGSGYLA-----CARCSSSGVCLSVDP--IST-SNASN-----GPLRVP---------TTQRCPNCSGDVPEL 288 (299)
Q Consensus 231 kkRCkYC~GTGYL~-----CArCSgSGtl~~idp--vS~-~~g~~-----~pl~cP---------gterCpNCSGaGKvl 288 (299)
.+.|+.|+|+||.. |..|.|+|-....+| +++ .+++. .-.+|| ....|+.|-|+||++
T Consensus 2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~ 81 (715)
T COG1107 2 IKKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL 81 (715)
T ss_pred CccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence 36799999999875 999999998855555 111 12221 125777 255699999999987
Q ss_pred c
Q 022323 289 P 289 (299)
Q Consensus 289 p 289 (299)
-
T Consensus 82 ~ 82 (715)
T COG1107 82 T 82 (715)
T ss_pred e
Confidence 4
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=95.97 E-value=0.004 Score=59.55 Aligned_cols=34 Identities=29% Similarity=0.710 Sum_probs=26.9
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~i 257 (299)
..++-.+...|.-|+|+|. -.|..|.|+|.+...
T Consensus 132 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 171 (378)
T PRK14278 132 KQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTV 171 (378)
T ss_pred EEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEE
Confidence 4555677889999999996 369999999987554
No 26
>PRK14285 chaperone protein DnaJ; Provisional
Probab=95.96 E-value=0.0043 Score=59.11 Aligned_cols=37 Identities=30% Similarity=0.859 Sum_probs=29.6
Q ss_pred hcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCc
Q 022323 231 KKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVP 286 (299)
Q Consensus 231 kkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGK 286 (299)
.+.|+.|+|+|.. +|..|.|.|.+ -+..|+.|.|.|.
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~ 210 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKI-------------------ISNPCKSCKGKGS 210 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCcccc-------------------cCCCCCCCCCCCE
Confidence 5679999999864 79999999976 1346999999884
No 27
>PRK14288 chaperone protein DnaJ; Provisional
Probab=95.95 E-value=0.0023 Score=61.02 Aligned_cols=33 Identities=24% Similarity=0.694 Sum_probs=25.7
Q ss_pred hhhhhHhhcccccccCcccc-----ccccccCCceecc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL-----ACARCSSSGVCLS 256 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL-----~CArCSgSGtl~~ 256 (299)
.+++-++.+.|.-|+|+|.- .|..|.|+|.+..
T Consensus 133 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~ 170 (369)
T PRK14288 133 KTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQVFM 170 (369)
T ss_pred EEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEEEE
Confidence 45566777899999999954 5999999998743
No 28
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.88 E-value=0.0027 Score=60.23 Aligned_cols=32 Identities=34% Similarity=0.811 Sum_probs=26.1
Q ss_pred hhhhhHhhcccccccCcccc------ccccccCCceec
Q 022323 224 NNVEQQEKKRCKYCHGSGYL------ACARCSSSGVCL 255 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL------~CArCSgSGtl~ 255 (299)
.+++-.+...|..|+|+|.- .|..|.|+|.+.
T Consensus 137 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 174 (366)
T PRK14294 137 KEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVT 174 (366)
T ss_pred EEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEE
Confidence 45666788899999999974 699999999874
No 29
>PRK14301 chaperone protein DnaJ; Provisional
Probab=95.85 E-value=0.0047 Score=59.00 Aligned_cols=38 Identities=34% Similarity=0.856 Sum_probs=27.3
Q ss_pred hcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
.+.|+.|+|+|.. +|..|.|+|.+ .+..|+.|.|.|.+
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~v 209 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRV-------------------ITHPCPKCKGSGIV 209 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeee-------------------cCCCCCCCCCCcee
Confidence 4568888888864 68888888875 13458888887743
No 30
>PRK14279 chaperone protein DnaJ; Provisional
Probab=95.85 E-value=0.0045 Score=59.58 Aligned_cols=39 Identities=31% Similarity=0.800 Sum_probs=29.7
Q ss_pred hhcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|.. +|..|.|+|.+ -+..|.+|.|.|.+
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------------i~~~C~~C~G~g~v 238 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSI-------------------IEDPCEECKGTGVT 238 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEE-------------------eCCcCCCCCCCeEE
Confidence 35779999999865 69999999976 13468889888743
No 31
>PRK14278 chaperone protein DnaJ; Provisional
Probab=95.85 E-value=0.0026 Score=60.78 Aligned_cols=38 Identities=29% Similarity=0.747 Sum_probs=31.0
Q ss_pred hcccccccCccc---------------cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGY---------------L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
.+.|+.|+|+|. -+|..|.|+|.+. +..|+.|.|.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-------------------PDPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-------------------CCCCCCCCCceeE
Confidence 467999999995 3699999999861 3459999999964
No 32
>PRK14288 chaperone protein DnaJ; Provisional
Probab=95.83 E-value=0.0055 Score=58.46 Aligned_cols=39 Identities=28% Similarity=0.757 Sum_probs=31.6
Q ss_pred hhcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|.. +|..|.|+|.+ -+..|+.|.|.|.+
T Consensus 155 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~v 204 (369)
T PRK14288 155 ALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKI-------------------IKTPCQACKGKTYI 204 (369)
T ss_pred CCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceE-------------------ccccCccCCCcceE
Confidence 45789999999965 59999999986 13469999998854
No 33
>PRK14280 chaperone protein DnaJ; Provisional
Probab=95.83 E-value=0.0048 Score=58.92 Aligned_cols=34 Identities=32% Similarity=0.746 Sum_probs=27.2
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~i 257 (299)
.+++-.+...|.-|+|+|. -.|..|.|+|.+...
T Consensus 136 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 175 (376)
T PRK14280 136 KEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVE 175 (376)
T ss_pred eEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEE
Confidence 4566677889999999995 469999999987443
No 34
>PRK14293 chaperone protein DnaJ; Provisional
Probab=95.83 E-value=0.0029 Score=60.22 Aligned_cols=33 Identities=24% Similarity=0.659 Sum_probs=27.1
Q ss_pred hhhhhHhhcccccccCccccc------cccccCCceecc
Q 022323 224 NNVEQQEKKRCKYCHGSGYLA------CARCSSSGVCLS 256 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL~------CArCSgSGtl~~ 256 (299)
.+++-++.+.|..|.|+|+-+ |..|.|+|.+..
T Consensus 136 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~ 174 (374)
T PRK14293 136 KEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRR 174 (374)
T ss_pred EEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEE
Confidence 456667889999999999854 999999998743
No 35
>PRK14287 chaperone protein DnaJ; Provisional
Probab=95.81 E-value=0.0034 Score=59.91 Aligned_cols=33 Identities=33% Similarity=0.743 Sum_probs=26.8
Q ss_pred hhhhhHhhcccccccCcccc------ccccccCCceecc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL------ACARCSSSGVCLS 256 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL------~CArCSgSGtl~~ 256 (299)
.+++-.+...|.-|+|+|.. .|..|.|+|.+..
T Consensus 131 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~ 169 (371)
T PRK14287 131 TEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNV 169 (371)
T ss_pred EEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEE
Confidence 45667788899999999964 5999999998743
No 36
>PRK14280 chaperone protein DnaJ; Provisional
Probab=95.81 E-value=0.0026 Score=60.67 Aligned_cols=39 Identities=33% Similarity=0.925 Sum_probs=32.0
Q ss_pred hhcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|.. +|..|.|+|.+. +..|++|.|.|.+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 212 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-------------------KEKCPTCHGKGKV 212 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-------------------cCCCCCCCCceEE
Confidence 45789999999964 799999999861 3469999999964
No 37
>PRK14289 chaperone protein DnaJ; Provisional
Probab=95.80 E-value=0.0029 Score=60.40 Aligned_cols=62 Identities=23% Similarity=0.523 Sum_probs=39.9
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceecccCCccCCCCCC-CCCCCC--------CcccCCCCCCCCcc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSVDPISTSNASN-GPLRVP--------TTQRCPNCSGDVPE 287 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~idpvS~~~g~~-~pl~cP--------gterCpNCSGaGKv 287 (299)
.+++-.+.+.|.-|+|+|+ -.|..|.|+|.+.....+. .|.. ...+|+ .+.+|+.|.|.|.+
T Consensus 147 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~--~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 223 (386)
T PRK14289 147 KKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTI--LGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV 223 (386)
T ss_pred EEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecc--cceEEEEEecCCCCccccccCcCCCCCCCCcEE
Confidence 4556677899999999997 4699999999875543211 1111 122333 14568888888743
No 38
>PRK14295 chaperone protein DnaJ; Provisional
Probab=95.78 E-value=0.0026 Score=61.16 Aligned_cols=34 Identities=24% Similarity=0.551 Sum_probs=27.4
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~i 257 (299)
..++-.+...|.-|+|+|. -.|..|.|+|.+...
T Consensus 159 k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 198 (389)
T PRK14295 159 VPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRN 198 (389)
T ss_pred EEEEeeccccCCCCcccccCCCCCCcCCCCCCCEeEEEEE
Confidence 4566678889999999996 469999999987543
No 39
>PRK14276 chaperone protein DnaJ; Provisional
Probab=95.75 E-value=0.0053 Score=58.70 Aligned_cols=39 Identities=33% Similarity=0.809 Sum_probs=29.1
Q ss_pred hhcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|+. +|..|.|+|.+ -+..|+.|.|.|.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~~ 215 (380)
T PRK14276 162 SPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKE-------------------IKEPCQTCHGTGHE 215 (380)
T ss_pred CCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCcc-------------------ccCCCCCCCCceEE
Confidence 35679999998864 68888888865 13468889888853
No 40
>PRK14282 chaperone protein DnaJ; Provisional
Probab=95.75 E-value=0.0064 Score=57.83 Aligned_cols=37 Identities=32% Similarity=0.856 Sum_probs=28.9
Q ss_pred hhcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCC
Q 022323 230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDV 285 (299)
Q Consensus 230 EkkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaG 285 (299)
..+.|+-|+|+|+. +|..|.|+|.+. +..|+.|.|.|
T Consensus 168 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g 219 (369)
T PRK14282 168 GYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-------------------GEYCHECGGSG 219 (369)
T ss_pred CCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-------------------CCCCCCCCCce
Confidence 35689999999865 688999999751 34688999888
No 41
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.70 E-value=0.0065 Score=58.15 Aligned_cols=33 Identities=30% Similarity=0.698 Sum_probs=26.5
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceecc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLS 256 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~ 256 (299)
.+++-.+.+.|..|+|+|. -.|..|.|+|.+..
T Consensus 149 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~ 187 (382)
T PRK14291 149 VSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQ 187 (382)
T ss_pred EEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEE
Confidence 4556677888999999995 56999999998744
No 42
>PRK14297 chaperone protein DnaJ; Provisional
Probab=95.63 E-value=0.0069 Score=57.84 Aligned_cols=34 Identities=21% Similarity=0.664 Sum_probs=27.1
Q ss_pred hhhhhHhhcccccccCccc------cccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGY------LACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~~i 257 (299)
..++-.+...|.-|+|+|. -.|..|.|+|.+...
T Consensus 141 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 180 (380)
T PRK14297 141 KEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQ 180 (380)
T ss_pred EEEEeeeeccCCCcccccccCCCcCccCCCccCeEEEEEE
Confidence 4556677888999999996 469999999987544
No 43
>PRK14297 chaperone protein DnaJ; Provisional
Probab=95.60 E-value=0.0038 Score=59.60 Aligned_cols=36 Identities=33% Similarity=0.906 Sum_probs=30.4
Q ss_pred hcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCC
Q 022323 231 KKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDV 285 (299)
Q Consensus 231 kkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaG 285 (299)
...|+.|+|+|+. +|..|.|+|.+ .+..|++|.|.|
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g 215 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKV-------------------IEDPCNKCHGKG 215 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceE-------------------cCCCCCCCCCCe
Confidence 5779999999965 69999999976 135699999988
No 44
>PRK14277 chaperone protein DnaJ; Provisional
Probab=95.53 E-value=0.0077 Score=57.70 Aligned_cols=34 Identities=26% Similarity=0.684 Sum_probs=27.0
Q ss_pred hhhhhHhhcccccccCcccc------ccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL------ACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL------~CArCSgSGtl~~i 257 (299)
.+++-.+.+.|.-|+|+|.. .|..|.|+|.+...
T Consensus 148 ~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 187 (386)
T PRK14277 148 KEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTR 187 (386)
T ss_pred EEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEE
Confidence 45666788899999999964 59999999987443
No 45
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.49 E-value=0.0084 Score=56.98 Aligned_cols=38 Identities=32% Similarity=0.812 Sum_probs=27.1
Q ss_pred hcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
.+.|+.|+|+|.. +|..|.|+|.+. +..|+.|.|.|.+
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 209 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-------------------VSPCKTCHGQGRV 209 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-------------------CcCCCCCCCceEe
Confidence 4578888888854 688888888751 3458888887743
No 46
>PRK14277 chaperone protein DnaJ; Provisional
Probab=95.45 E-value=0.0042 Score=59.49 Aligned_cols=39 Identities=33% Similarity=0.865 Sum_probs=31.9
Q ss_pred hhcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|.. +|..|.|+|.+. +..|..|.|.|-+
T Consensus 171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 224 (386)
T PRK14277 171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-------------------TDPCNKCGGTGRI 224 (386)
T ss_pred CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-------------------cCCCCCCCCCcEE
Confidence 46789999999864 699999999861 3469999999854
No 47
>PRK14281 chaperone protein DnaJ; Provisional
Probab=95.40 E-value=0.0045 Score=59.56 Aligned_cols=34 Identities=26% Similarity=0.670 Sum_probs=27.0
Q ss_pred hhhhhHhhcccccccCcccc-----ccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL-----ACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL-----~CArCSgSGtl~~i 257 (299)
.+++-.+...|.-|+|+|.. .|..|.|+|.+...
T Consensus 156 ~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~ 194 (397)
T PRK14281 156 KTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQA 194 (397)
T ss_pred EEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEE
Confidence 45566778899999999975 59999999987443
No 48
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=95.40 E-value=0.01 Score=58.23 Aligned_cols=41 Identities=32% Similarity=0.810 Sum_probs=29.8
Q ss_pred hhcccccccCccc---------------cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGY---------------L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+-|+|+|. -+|..|.|+|.+... +..|++|.|.|-+
T Consensus 165 ~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~-----------------~~~C~~C~G~g~v 220 (421)
T PTZ00037 165 AFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE-----------------SKKCKNCSGKGVK 220 (421)
T ss_pred CCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc-----------------cccCCcCCCccee
Confidence 3567999999884 279999999976211 4568888888844
No 49
>PRK14293 chaperone protein DnaJ; Provisional
Probab=95.39 E-value=0.0095 Score=56.79 Aligned_cols=37 Identities=27% Similarity=0.798 Sum_probs=27.4
Q ss_pred hcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCc
Q 022323 231 KKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVP 286 (299)
Q Consensus 231 kkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGK 286 (299)
...|+.|+|+|.. .|..|.|.|.+ .+..|..|.|.|.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~ 211 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQV-------------------IEDPCDACGGQGV 211 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeE-------------------eccCCCCCCCCcc
Confidence 4678888888863 58888888865 1345888888774
No 50
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=95.38 E-value=0.0098 Score=55.87 Aligned_cols=38 Identities=29% Similarity=0.790 Sum_probs=28.7
Q ss_pred hcccccccCccc---------------cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGY---------------L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
.+.|+.|+|+|. -+|..|.|+|.+. +..|++|.|.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 212 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-------------------KEPCSTCKGKGRV 212 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-------------------CCCCCCCCCCcEe
Confidence 577999999885 3699999999761 3358888888843
No 51
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.34 E-value=0.0055 Score=58.61 Aligned_cols=38 Identities=34% Similarity=0.823 Sum_probs=31.3
Q ss_pred hhcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|.. +|..|.|+|.+ +..|+.|.|.|-+
T Consensus 172 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--------------------~~~C~~C~G~g~v 220 (382)
T PRK14291 172 GEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL--------------------REPCSKCNGRGLV 220 (382)
T ss_pred CCccCCCCCCceEEEEecceEEEEecCCCCCCceEE--------------------ccCCCCCCCCceE
Confidence 35789999999965 79999999964 3469999998853
No 52
>PRK14295 chaperone protein DnaJ; Provisional
Probab=95.23 E-value=0.01 Score=57.10 Aligned_cols=38 Identities=26% Similarity=0.733 Sum_probs=28.6
Q ss_pred hcccccccCccc-----------cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGY-----------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGY-----------L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
.+.|..|+|+|. .+|..|.|+|.+ -+..|+.|.|.|.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~~ 231 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLI-------------------ADDPCLVCKGSGRA 231 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEE-------------------eccCCCCCCCCceE
Confidence 577889998886 478888888875 13468888888743
No 53
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.013 Score=57.49 Aligned_cols=39 Identities=31% Similarity=0.786 Sum_probs=31.4
Q ss_pred hhcccccccCccc-------------cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGY-------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGY-------------L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+-|+|+|. -.|.+|.|+|.+ -+..|+.|-|.|.+
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~-------------------i~~pC~~C~G~G~v 209 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKI-------------------IKDPCGKCKGKGRV 209 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeE-------------------CCCCCCCCCCCCeE
Confidence 6778999999984 469999999986 14578899998874
No 54
>PRK14300 chaperone protein DnaJ; Provisional
Probab=95.14 E-value=0.0068 Score=57.80 Aligned_cols=39 Identities=28% Similarity=0.681 Sum_probs=32.1
Q ss_pred hhcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|.. +|..|.|.|.+ -+..|++|.|.|.+
T Consensus 161 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~v 210 (372)
T PRK14300 161 TVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQI-------------------IKNPCKKCHGMGRY 210 (372)
T ss_pred CCccCCCccCeEEEEEeeceEEEEEeCCCCCccceE-------------------eCCCCCCCCCceEE
Confidence 45789999999954 69999999976 13569999999986
No 55
>PRK14281 chaperone protein DnaJ; Provisional
Probab=95.04 E-value=0.015 Score=56.14 Aligned_cols=39 Identities=38% Similarity=0.971 Sum_probs=29.7
Q ss_pred hhcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+.|+|+|+. +|..|.|+|.+. +..|+.|.|.|.+
T Consensus 178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~v 231 (397)
T PRK14281 178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-------------------KDRCPACYGEGIK 231 (397)
T ss_pred CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-------------------CCCCCCCCCCccE
Confidence 35689999999853 699999999751 3468888888764
No 56
>PRK14292 chaperone protein DnaJ; Provisional
Probab=94.96 E-value=0.014 Score=55.31 Aligned_cols=31 Identities=32% Similarity=0.725 Sum_probs=24.2
Q ss_pred hhhhHhhcccccccCccc-------cccccccCCceec
Q 022323 225 NVEQQEKKRCKYCHGSGY-------LACARCSSSGVCL 255 (299)
Q Consensus 225 nvkqQEkkRCkYC~GTGY-------L~CArCSgSGtl~ 255 (299)
.++-.+...|..|.|+|. -.|..|.|+|.+.
T Consensus 133 ~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~ 170 (371)
T PRK14292 133 EVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVR 170 (371)
T ss_pred EEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEE
Confidence 445566778999999986 3589999999774
No 57
>PRK14290 chaperone protein DnaJ; Provisional
Probab=94.94 E-value=0.011 Score=56.26 Aligned_cols=34 Identities=24% Similarity=0.652 Sum_probs=27.4
Q ss_pred hhhhhHhhcccccccCccc-----cccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGY-----LACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGY-----L~CArCSgSGtl~~i 257 (299)
.+++-...+.|.-|+|+|. -.|..|.|+|.+...
T Consensus 142 ~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~ 180 (365)
T PRK14290 142 KRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIV 180 (365)
T ss_pred EEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEE
Confidence 4566778889999999997 469999999986443
No 58
>PRK14283 chaperone protein DnaJ; Provisional
Probab=94.90 E-value=0.0082 Score=57.27 Aligned_cols=34 Identities=26% Similarity=0.702 Sum_probs=26.4
Q ss_pred hhhhhHhhcccccccCcccc------ccccccCCceeccc
Q 022323 224 NNVEQQEKKRCKYCHGSGYL------ACARCSSSGVCLSV 257 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTGYL------~CArCSgSGtl~~i 257 (299)
.+++-.+.+.|..|+|+|.- .|..|.|+|.+...
T Consensus 139 ~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~ 178 (378)
T PRK14283 139 KDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQV 178 (378)
T ss_pred eEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEE
Confidence 35556677889999998864 59999999987543
No 59
>PRK14287 chaperone protein DnaJ; Provisional
Probab=94.83 E-value=0.014 Score=55.82 Aligned_cols=38 Identities=34% Similarity=0.906 Sum_probs=28.0
Q ss_pred hhcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCc
Q 022323 230 EKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVP 286 (299)
Q Consensus 230 EkkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGK 286 (299)
..+.|+.|+|+|+. +|..|.|+|.+. +..|+.|.|.|.
T Consensus 154 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~g~ 206 (371)
T PRK14287 154 KPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-------------------KQKCATCGGKGK 206 (371)
T ss_pred CCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-------------------cccCCCCCCeeE
Confidence 35679999998863 588888888751 345888888774
No 60
>PRK14283 chaperone protein DnaJ; Provisional
Probab=94.81 E-value=0.018 Score=55.07 Aligned_cols=25 Identities=36% Similarity=0.893 Sum_probs=17.5
Q ss_pred hhcccccccCcccc---------------ccccccCCcee
Q 022323 230 EKKRCKYCHGSGYL---------------ACARCSSSGVC 254 (299)
Q Consensus 230 EkkRCkYC~GTGYL---------------~CArCSgSGtl 254 (299)
..+.|+-|.|+|.+ .|..|.|+|.+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~ 201 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKI 201 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCcccee
Confidence 34668888887764 47777777765
No 61
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=93.93 E-value=0.021 Score=47.72 Aligned_cols=26 Identities=38% Similarity=0.981 Sum_probs=14.9
Q ss_pred HhhcccccccCccccccccccCCcee
Q 022323 229 QEKKRCKYCHGSGYLACARCSSSGVC 254 (299)
Q Consensus 229 QEkkRCkYC~GTGYL~CArCSgSGtl 254 (299)
|....|+.|+|+|+..|..|.|+|+.
T Consensus 73 q~~~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 73 KEVSKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred EEEEECCCCCCcceeeCCCCCCCEEE
Confidence 44555666666665556666665554
No 62
>PRK14292 chaperone protein DnaJ; Provisional
Probab=93.87 E-value=0.019 Score=54.44 Aligned_cols=40 Identities=30% Similarity=0.757 Sum_probs=32.8
Q ss_pred HhhcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 229 QEKKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 229 QEkkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
+....|+.|.|+|+. .|..|.|.|.. -...|+.|.|.|.+
T Consensus 155 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~v 209 (371)
T PRK14292 155 KPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQI-------------------ITDPCTVCRGRGRT 209 (371)
T ss_pred CCCccCCCCCCccEEEEEEeccCceEEEeeecCCCccccee-------------------cCCCCCCCCCceEE
Confidence 446889999999975 59999999975 14579999999855
No 63
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.044 Score=52.44 Aligned_cols=53 Identities=25% Similarity=0.526 Sum_probs=36.2
Q ss_pred hHhhcccccccCccccccccccCCceecccCCccCCCCCC-CCCCCC--CcccCCCCCC
Q 022323 228 QQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASN-GPLRVP--TTQRCPNCSG 283 (299)
Q Consensus 228 qQEkkRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~-~pl~cP--gterCpNCSG 283 (299)
++.--.|-.|.|-++|+|..|+||=.+.-. .+.++.. +=..|. |-.|||.|+.
T Consensus 226 ~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~---~~~~~~~~rC~~CNENGLvrCp~Cs~ 281 (281)
T KOG2824|consen 226 CEGGGVCESCGGARFLPCSNCHGSCKVHEE---EEDDGGVLRCLECNENGLVRCPVCSN 281 (281)
T ss_pred CCCCCcCCCcCCcceEecCCCCCceeeeee---ccCCCcEEECcccCCCCceeCCccCC
Confidence 445589999999999999999999765321 2222211 114444 7889999974
No 64
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=93.34 E-value=0.07 Score=48.02 Aligned_cols=26 Identities=27% Similarity=0.846 Sum_probs=19.3
Q ss_pred hcccccccCccccc-----cccccCCceecc
Q 022323 231 KKRCKYCHGSGYLA-----CARCSSSGVCLS 256 (299)
Q Consensus 231 kkRCkYC~GTGYL~-----CArCSgSGtl~~ 256 (299)
...|+-|+|+|+.. |..|.|+|.+..
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~ 129 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRP 129 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEee
Confidence 67788888888753 888888887633
No 65
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=92.73 E-value=0.063 Score=48.32 Aligned_cols=32 Identities=25% Similarity=0.603 Sum_probs=26.1
Q ss_pred ccccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCccccc
Q 022323 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELPL 290 (299)
Q Consensus 242 YL~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKvlp~ 290 (299)
.-.|.+|.|+|.+... ...|+.|.|+|++-+-
T Consensus 99 ~~~C~~C~G~G~~i~~-----------------~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRR-----------------QRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecC-----------------CCCCCCCCCccEEeee
Confidence 8899999999987221 3579999999998764
No 66
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=91.43 E-value=0.16 Score=43.65 Aligned_cols=48 Identities=21% Similarity=0.559 Sum_probs=35.4
Q ss_pred hhcccccccCccccccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
....|.-|.|.++++|..|+||=-+..-+... . -...||+.|-=+|-+
T Consensus 98 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~--~--------~~~~rC~~Cnengl~ 145 (147)
T cd03031 98 GGGVCEGCGGARFVPCSECNGSCKVFAENATA--A--------GGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCCcCeEECCCCCCcceEEeccCcc--c--------ccEEECCCCCccccc
Confidence 34569999999999999999998774433210 1 147899999877754
No 67
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=87.74 E-value=0.27 Score=51.82 Aligned_cols=45 Identities=18% Similarity=0.449 Sum_probs=32.0
Q ss_pred ccccccCCceecccCCccCCCCCCCCCCCCC---------cccCCCCCCCCccc
Q 022323 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPT---------TQRCPNCSGDVPEL 288 (299)
Q Consensus 244 ~CArCSgSGtl~~idpvS~~~g~~~pl~cPg---------terCpNCSGaGKvl 288 (299)
+|..|.|+|++...++.+.+.|+-.-+.|+. -.-|+.|.-.+|.+
T Consensus 55 pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~~v 108 (715)
T COG1107 55 PCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPKIV 108 (715)
T ss_pred CCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCcee
Confidence 6777777777777777777776665566661 12599999998833
No 68
>PRK14290 chaperone protein DnaJ; Provisional
Probab=85.62 E-value=0.24 Score=47.24 Aligned_cols=39 Identities=31% Similarity=0.851 Sum_probs=28.4
Q ss_pred hhcccccccCccc---------------cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 230 EKKRCKYCHGSGY---------------LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 230 EkkRCkYC~GTGY---------------L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
..+.|+-|+|+|. -+|..|.|.|.+ -+..|+.|.|.|-+
T Consensus 164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~v 217 (365)
T PRK14290 164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI-------------------PEEKCPRCNGTGTV 217 (365)
T ss_pred CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE-------------------ccCCCCCCCCceeE
Confidence 3567888888884 478888888865 14568888887764
No 69
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=0.55 Score=45.90 Aligned_cols=56 Identities=30% Similarity=0.611 Sum_probs=32.7
Q ss_pred HhhcccccccCccc-----cccccccCCceecccCCccCCCCCCCC-CCCC-----C-----cccCCCCCCCC
Q 022323 229 QEKKRCKYCHGSGY-----LACARCSSSGVCLSVDPISTSNASNGP-LRVP-----T-----TQRCPNCSGDV 285 (299)
Q Consensus 229 QEkkRCkYC~GTGY-----L~CArCSgSGtl~~idpvS~~~g~~~p-l~cP-----g-----terCpNCSGaG 285 (299)
+....|.-|+|.|- -+|..|.|+|....+.-... --..++ +.|+ + +.+|+.|+|++
T Consensus 125 ~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gP-g~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~ 196 (337)
T KOG0712|consen 125 SRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGP-GMVQSPQLVCDSCNGSGETISLKDRCKTCSGAK 196 (337)
T ss_pred ccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccc-cccccceeEeccCCCccccccccccCcccccch
Confidence 45678888888552 35889999988654432221 000111 3333 1 34788888886
No 70
>PRK14298 chaperone protein DnaJ; Provisional
Probab=83.67 E-value=0.38 Score=46.39 Aligned_cols=38 Identities=37% Similarity=0.884 Sum_probs=29.2
Q ss_pred hcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
.++|+-|+|+|+. +|..|.|+|.+ -+..|+.|.|.|.+
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~-------------------~~~~C~~C~G~g~v 210 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQV-------------------IESPCPVCSGTGKV 210 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcc-------------------cCCCCCCCCCccEE
Confidence 4679999999864 69999999975 13468899988854
No 71
>PRK14289 chaperone protein DnaJ; Provisional
Probab=82.99 E-value=0.45 Score=45.65 Aligned_cols=26 Identities=27% Similarity=0.931 Sum_probs=19.8
Q ss_pred hhcccccccCcccc---ccccccCCceec
Q 022323 230 EKKRCKYCHGSGYL---ACARCSSSGVCL 255 (299)
Q Consensus 230 EkkRCkYC~GTGYL---~CArCSgSGtl~ 255 (299)
....|+.|.|+|+. +|..|.|+|.+.
T Consensus 196 ~~~~C~~C~G~G~~~~~~C~~C~G~g~v~ 224 (386)
T PRK14289 196 TQSTCPTCNGEGKIIKKKCKKCGGEGIVY 224 (386)
T ss_pred EEEecCCCCccccccCcCCCCCCCCcEEe
Confidence 36778888888875 688888888763
No 72
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.23 E-value=0.98 Score=42.54 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=8.0
Q ss_pred CCCCCCCCccc
Q 022323 278 CPNCSGDVPEL 288 (299)
Q Consensus 278 CpNCSGaGKvl 288 (299)
|.-|.|+|+|.
T Consensus 220 c~~~~g~~~v~ 230 (288)
T KOG0715|consen 220 CQACSGAGQVR 230 (288)
T ss_pred HHHhhcchhhh
Confidence 77888888553
No 73
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=71.28 E-value=4.7 Score=42.98 Aligned_cols=56 Identities=18% Similarity=0.401 Sum_probs=44.1
Q ss_pred EEeCchhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCC
Q 022323 68 IIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPEIPSS 136 (299)
Q Consensus 68 iiegpetv~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~~~~~~~~ee~~e~pe~~S~ 136 (299)
+.|+|++|++| ++|+.++.+.|-.|+|-+|.++ |..+.+..+.|-+.|+.|-|.+.
T Consensus 299 ~a~~pk~V~~F----l~~Ls~k~~~~~~kel~~i~~m---------k~k~~~~~~~e~~~WD~~YYT~~ 354 (704)
T KOG2090|consen 299 LAKNPKTVRSF----LEELSEKLSEKTDKELAVIRDM---------KKKENNNNNAEIEPWDRPYYTSM 354 (704)
T ss_pred ccCChHHHHHH----HHHHHHhhhHHHHHHHHHHHHH---------HhhhcCCCCCccccccchhhhhH
Confidence 58999999999 5799999999999999999988 22344544546678888866554
No 74
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.00 E-value=13 Score=36.56 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=26.3
Q ss_pred ccccCCCCCCCCCCCCCCCC-----------CHHHHHHHHHHHHHHHHH
Q 022323 124 EEEASEMPEIPSSIPFLPYV-----------TPKTLKQLYLTSLSFISG 161 (299)
Q Consensus 124 ~ee~~e~pe~~S~iPflp~l-----------t~~tlk~yy~~~~~~i~~ 161 (299)
..++|.-|-.||.||+.|=. =+||.|..|.+|...+..
T Consensus 96 ~~~~nNWPPLP~~~pv~PcfyqD~s~EIPv~~Qk~vk~~yylwm~~~~t 144 (313)
T KOG3088|consen 96 VIRENNWPPLPSFIPVFPCFYQDISNEIPVEFQKLVKRAYYLWMGLVLT 144 (313)
T ss_pred cccccCCCCCCCCCCcccccccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 34456677799999999844 257888777776655443
No 75
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=63.92 E-value=2.8 Score=41.18 Aligned_cols=72 Identities=26% Similarity=0.349 Sum_probs=47.5
Q ss_pred cHHHHHHhcCcccccccc-CcceeeccCCch------------hHHHHHHHHHhhhhhhHhhcccccccCcccc-----c
Q 022323 183 SYEDFIRNMHLPMQLSQV-DPIVASFSGGAV------------GVISALMLIEANNVEQQEKKRCKYCHGSGYL-----A 244 (299)
Q Consensus 183 sY~dFI~s~hLP~QLsqV-DPIVASFsGGAV------------GVisaLmvvEinnvkqQEkkRCkYC~GTGYL-----~ 244 (299)
+++|+....+.|+.|+.= =....+=+||.= ||.+.+--+. --+.||...+|.-|.|+|.- .
T Consensus 110 ~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~g-Pg~~qs~q~~C~~C~G~G~~~~~kd~ 188 (337)
T KOG0712|consen 110 TLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMG-PGMVQSPQLVCDSCNGSGETISLKDR 188 (337)
T ss_pred EHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEecc-ccccccceeEeccCCCcccccccccc
Confidence 589999999999988751 111112222221 3332221111 12568999999999999998 9
Q ss_pred cccccCCceec
Q 022323 245 CARCSSSGVCL 255 (299)
Q Consensus 245 CArCSgSGtl~ 255 (299)
|.+|+|++++.
T Consensus 189 C~~C~G~~~v~ 199 (337)
T KOG0712|consen 189 CKTCSGAKVVR 199 (337)
T ss_pred Ccccccchhhh
Confidence 99999999873
No 76
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=63.65 E-value=8.5 Score=33.54 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=33.1
Q ss_pred HHhhhhhhHhhcccccccC----ccccccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCC
Q 022323 221 IEANNVEQQEKKRCKYCHG----SGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDV 285 (299)
Q Consensus 221 vEinnvkqQEkkRCkYC~G----TGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaG 285 (299)
||...+.+.-+..=.|..| .|-|.|..|.-.-.+..++. =..||+|.++.
T Consensus 87 vEw~el~~d~~h~g~Y~sGE~~g~G~l~C~~Cg~~~~~~~~~~---------------l~~Cp~C~~~~ 140 (146)
T PF07295_consen 87 VEWAELAQDLEHHGVYHSGEVVGPGTLVCENCGHEVELTHPER---------------LPPCPKCGHTE 140 (146)
T ss_pred HHHHHHHHHHHhcCCeecCcEecCceEecccCCCEEEecCCCc---------------CCCCCCCCCCe
Confidence 4444444443333378877 99999999988877643322 23599998863
No 77
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=61.84 E-value=4.7 Score=28.61 Aligned_cols=19 Identities=47% Similarity=1.100 Sum_probs=14.2
Q ss_pred cccCCCCCCCCccccceecCCCCC
Q 022323 275 TQRCPNCSGDVPELPLHRNDDGKR 298 (299)
Q Consensus 275 terCpNCSGaGKvlp~~~n~~~~~ 298 (299)
-+.||.| ..||++++||+.
T Consensus 17 ~~~Cp~C-----~~PL~~~k~g~~ 35 (41)
T PF06677_consen 17 DEHCPDC-----GTPLMRDKDGKI 35 (41)
T ss_pred cCccCCC-----CCeeEEecCCCE
Confidence 3568888 278998888864
No 78
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=61.52 E-value=5.5 Score=27.36 Aligned_cols=7 Identities=29% Similarity=1.080 Sum_probs=4.2
Q ss_pred ccccccC
Q 022323 233 RCKYCHG 239 (299)
Q Consensus 233 RCkYC~G 239 (299)
+|++|..
T Consensus 2 ~Cp~Cg~ 8 (43)
T PF08271_consen 2 KCPNCGS 8 (43)
T ss_dssp SBTTTSS
T ss_pred CCcCCcC
Confidence 4666665
No 79
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.74 E-value=6.1 Score=39.62 Aligned_cols=61 Identities=21% Similarity=0.492 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhhhhhhHhh--------------cccccccCccccccccccCCceecccCCccCCCCCCCCCCCC-----
Q 022323 213 GVISALMLIEANNVEQQEK--------------KRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVP----- 273 (299)
Q Consensus 213 GVisaLmvvEinnvkqQEk--------------kRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cP----- 273 (299)
|.+|.-++-++++.-++.+ ..|..|.-+ ..|.+|+++-+.-+. ...+.|.
T Consensus 181 ~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~--~~C~~C~~~l~~h~~---------~~~l~Ch~Cg~~ 249 (505)
T TIGR00595 181 SFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI--LCCPNCDVSLTYHKK---------EGKLRCHYCGYQ 249 (505)
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc--cCCCCCCCceEEecC---------CCeEEcCCCcCc
Confidence 5677766666654433221 246666543 568888777665211 1245555
Q ss_pred --CcccCCCCCCC
Q 022323 274 --TTQRCPNCSGD 284 (299)
Q Consensus 274 --gterCpNCSGa 284 (299)
-..+||+|.+.
T Consensus 250 ~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 250 EPIPKTCPQCGSE 262 (505)
T ss_pred CCCCCCCCCCCCC
Confidence 35689999764
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=59.29 E-value=6.5 Score=40.79 Aligned_cols=61 Identities=20% Similarity=0.397 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhhhhhhHh--------------hcccccccCccccccccccCCceecccCCccCCCCCCCCCCCC-----
Q 022323 213 GVISALMLIEANNVEQQE--------------KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVP----- 273 (299)
Q Consensus 213 GVisaLmvvEinnvkqQE--------------kkRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cP----- 273 (299)
..||..++-++++.-+.. ...|.-|.-+ +.|.+|+++-+.-.. ...+.|.
T Consensus 349 ~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~--~~C~~C~~~l~~h~~---------~~~l~Ch~Cg~~ 417 (679)
T PRK05580 349 SFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWV--AECPHCDASLTLHRF---------QRRLRCHHCGYQ 417 (679)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCc--cCCCCCCCceeEECC---------CCeEECCCCcCC
Confidence 357777776676544322 1234444322 357777775544111 1234444
Q ss_pred --CcccCCCCCCC
Q 022323 274 --TTQRCPNCSGD 284 (299)
Q Consensus 274 --gterCpNCSGa 284 (299)
-..+||+|.+.
T Consensus 418 ~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 418 EPIPKACPECGST 430 (679)
T ss_pred CCCCCCCCCCcCC
Confidence 25579999765
No 81
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=54.87 E-value=5.5 Score=36.77 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=35.1
Q ss_pred CCCccHHHHHHhcCccccccccCcceeeccCCchhHHHHHHHHHh----hhhhhHhhcccccccCc------------c-
Q 022323 179 LGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEA----NNVEQQEKKRCKYCHGS------------G- 241 (299)
Q Consensus 179 lGgtsY~dFI~s~hLP~QLsqVDPIVASFsGGAVGVisaLmvvEi----nnvkqQEkkRCkYC~GT------------G- 241 (299)
.+.....++++.+= =-+....++..+-|...++.++=+.+.-.+ ...+.-++-.|+-|.+. |
T Consensus 117 ~~~~~~~~~~~~~l-~~~~~~~~~~l~~~~~aaL~~~~~~~a~~l~~~~~~~~~w~~g~CPvCGs~P~~s~l~~~~~~G~ 195 (290)
T PF04216_consen 117 ADEEDLEALAEALL-AGEMPVDPEALAFFLWAALQPFLAALAAALDAALLPPEGWQRGYCPVCGSPPVLSVLRGGEREGK 195 (290)
T ss_dssp --HHHHHHHHHHHH-TT-GGGS-GGGHHHHHHHHHHHHHHHHHT--TTSSS---TT-SS-TTT---EEEEEEE------E
T ss_pred CCHHHHHHHHHHHH-hcccCCCcHHHHHHHHHHHHHHHHHHHHhccccccccCCccCCcCCCCCCcCceEEEecCCCCcc
Confidence 34444555655331 145556666666666677776655554421 11233346799999762 3
Q ss_pred -ccccccccCCcee
Q 022323 242 -YLACARCSSSGVC 254 (299)
Q Consensus 242 -YL~CArCSgSGtl 254 (299)
||.|..|...=-.
T Consensus 196 R~L~Cs~C~t~W~~ 209 (290)
T PF04216_consen 196 RYLHCSLCGTEWRF 209 (290)
T ss_dssp EEEEETTT--EEE-
T ss_pred EEEEcCCCCCeeee
Confidence 7888888765544
No 82
>PRK14873 primosome assembly protein PriA; Provisional
Probab=51.64 E-value=10 Score=39.86 Aligned_cols=59 Identities=24% Similarity=0.515 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhhhhHh-------------hcccccccCccccccccccCCceecccCCccCCCCCCCCCCCC------Cc
Q 022323 215 ISALMLIEANNVEQQE-------------KKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVP------TT 275 (299)
Q Consensus 215 isaLmvvEinnvkqQE-------------kkRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cP------gt 275 (299)
||..++=++++.-+.. ...|..|.-+ ..|.+|++.-+.-.- ...+.|. ..
T Consensus 354 ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~~--~~C~~C~~~L~~h~~---------~~~l~Ch~CG~~~~p 422 (665)
T PRK14873 354 LPSLAFRAARDALEHGPVLVQVPRRGYVPSLACARCRTP--ARCRHCTGPLGLPSA---------GGTPRCRWCGRAAPD 422 (665)
T ss_pred cCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcCe--eECCCCCCceeEecC---------CCeeECCCCcCCCcC
Confidence 6666665665443322 2356667554 579999988876221 1234444 35
Q ss_pred ccCCCCCCC
Q 022323 276 QRCPNCSGD 284 (299)
Q Consensus 276 erCpNCSGa 284 (299)
.+||+|.+.
T Consensus 423 ~~Cp~Cgs~ 431 (665)
T PRK14873 423 WRCPRCGSD 431 (665)
T ss_pred ccCCCCcCC
Confidence 689999765
No 83
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.91 E-value=7.4 Score=42.39 Aligned_cols=20 Identities=10% Similarity=0.420 Sum_probs=15.9
Q ss_pred hhHHHHHhhcHHHHHHHHHh
Q 022323 73 ETLQDFVQMQLKEIEDNIKH 92 (299)
Q Consensus 73 etv~Dfa~mql~EI~dNI~s 92 (299)
-++-|+.+|.++|+.+=+++
T Consensus 427 ~~I~e~~~~~v~~~~~~~~~ 446 (924)
T TIGR00630 427 KSIADVSELSIREAHEFFNQ 446 (924)
T ss_pred EEHHHHhcCCHHHHHHHHHh
Confidence 56899999999888776554
No 84
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=50.36 E-value=29 Score=31.40 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=19.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccchhhh
Q 022323 138 PFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLEL 175 (299)
Q Consensus 138 Pflp~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~lEl 175 (299)
+|..++. ..++.-+.....++.++|.|-..+.|++=+
T Consensus 213 ~~~~~~~-~al~~~~~~~~~~~~~lv~~l~~l~p~~~~ 249 (262)
T PF14257_consen 213 SFGSRFR-DALKNGWNALVSFLSGLVVFLVGLLPWLPL 249 (262)
T ss_pred CcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554544 345555555555555555555555555433
No 85
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=49.74 E-value=14 Score=35.62 Aligned_cols=126 Identities=19% Similarity=0.318 Sum_probs=73.3
Q ss_pred ccccchhhhhhcCCCccHHHHHHhcCccccccccCcceeeccCCchhHHHHHHHHHhhhhh----hHhhcccccccCc--
Q 022323 167 GLIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVE----QQEKKRCKYCHGS-- 240 (299)
Q Consensus 167 GLiAP~lElkLGlGgtsY~dFI~s~hLP~QLsqVDPIVASFsGGAVGVisaLmvvEinnvk----qQEkkRCkYC~GT-- 240 (299)
+=++.+|+-....+-.--+.+ -.-.|--+.++|+.-.+-|...|.-|.-+.+.--+..-. ...+-.|+-|.+.
T Consensus 117 ~~~~~~l~~l~~~~~~~le~~-a~alL~~~~~~~~~a~apfi~AALq~~~~~~a~~l~~~~~~~~~~~~~~CPvCGs~P~ 195 (305)
T TIGR01562 117 AAAGAALEQLREAEEGQLKAM-AIALLAGDFDLLSAALVPFLGAALQVAWAHWALGLEGGAVVETRESRTLCPACGSPPV 195 (305)
T ss_pred HHHHHHHHHHHhCCHHHHHHH-HHHHhcCCccccchhhhHHHHHHHHHHHHHHHHhCCccccCcccCCCCcCCCCCChhh
Confidence 334556665444443334444 445678888899988888988888888888776554222 1236689999762
Q ss_pred -----------c--ccccccccCCceecccCCccCCCCCCCC--CCCC--------CcccCCCCCCCCccccceecCCC
Q 022323 241 -----------G--YLACARCSSSGVCLSVDPISTSNASNGP--LRVP--------TTQRCPNCSGDVPELPLHRNDDG 296 (299)
Q Consensus 241 -----------G--YL~CArCSgSGtl~~idpvS~~~g~~~p--l~cP--------gterCpNCSGaGKvlp~~~n~~~ 296 (299)
| ||.|..|...=-..++ +...++.+++- ..-. .-+.|.+|.+==|++ ++.+|+
T Consensus 196 ~s~~~~~~~~~G~RyL~CslC~teW~~~R~-~C~~Cg~~~~l~y~~~e~~~~~~~~r~e~C~~C~~YlK~~--~~~~d~ 271 (305)
T TIGR01562 196 ASMVRQGGKETGLRYLSCSLCATEWHYVRV-KCSHCEESKHLAYLSLEHDAEKAVLKAETCDSCQGYLKIL--YQEKDP 271 (305)
T ss_pred hhhhcccCCCCCceEEEcCCCCCcccccCc-cCCCCCCCCceeeEeecCCCCCcceEEeeccccccchhhh--ccccCC
Confidence 1 8888888776655333 22222222211 1111 123477777766666 444554
No 86
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=49.12 E-value=8.7 Score=26.04 Aligned_cols=10 Identities=40% Similarity=1.029 Sum_probs=7.1
Q ss_pred hcccccccCc
Q 022323 231 KKRCKYCHGS 240 (299)
Q Consensus 231 kkRCkYC~GT 240 (299)
.++|++|.+.
T Consensus 3 ~~~C~~C~~~ 12 (33)
T PF08792_consen 3 LKKCSKCGGN 12 (33)
T ss_pred ceEcCCCCCC
Confidence 3678888774
No 87
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=47.61 E-value=9.3 Score=36.11 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=16.0
Q ss_pred ccccCccccccccccCCcee
Q 022323 235 KYCHGSGYLACARCSSSGVC 254 (299)
Q Consensus 235 kYC~GTGYL~CArCSgSGtl 254 (299)
....|.+..+|++|+|+|-|
T Consensus 31 ~e~~g~~~vtCPTCqGtGrI 50 (238)
T PF07092_consen 31 VEFTGRDSVTCPTCQGTGRI 50 (238)
T ss_pred ccccCCCCCcCCCCcCCccC
Confidence 33556789999999999977
No 88
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=46.36 E-value=21 Score=31.86 Aligned_cols=32 Identities=22% Similarity=0.677 Sum_probs=24.1
Q ss_pred hhHhhcccccccCccccccccccCCceecccCCccC
Q 022323 227 EQQEKKRCKYCHGSGYLACARCSSSGVCLSVDPIST 262 (299)
Q Consensus 227 kqQEkkRCkYC~GTGYL~CArCSgSGtl~~idpvS~ 262 (299)
-.+-...|.=|.+.|+ .|.-|.....| -|...
T Consensus 138 ~~~HV~~C~lC~~kGf-iCe~C~~~~~I---fPF~~ 169 (202)
T PF13901_consen 138 AEKHVYSCELCQQKGF-ICEICNSDDII---FPFQI 169 (202)
T ss_pred HHHHHHHhHHHHhCCC-CCccCCCCCCC---CCCCC
Confidence 3344558999999997 89999988655 55553
No 89
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=45.93 E-value=11 Score=25.71 Aligned_cols=28 Identities=25% Similarity=0.707 Sum_probs=17.2
Q ss_pred ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCC
Q 022323 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGD 284 (299)
Q Consensus 244 ~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGa 284 (299)
.|++|.........+.+. -.+|++|.|.
T Consensus 1 ~CP~C~~~l~~~~~~~~~-------------id~C~~C~G~ 28 (41)
T PF13453_consen 1 KCPRCGTELEPVRLGDVE-------------IDVCPSCGGI 28 (41)
T ss_pred CcCCCCcccceEEECCEE-------------EEECCCCCeE
Confidence 488887754443332222 5679999883
No 90
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=45.15 E-value=15 Score=39.43 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=28.5
Q ss_pred cccccccCccccccccccCCceecccCCccCCCCCCCCCCCC-------CcccCCCCCCC
Q 022323 232 KRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVP-------TTQRCPNCSGD 284 (299)
Q Consensus 232 kRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cP-------gterCpNCSGa 284 (299)
..|.-|.-+ ..|.+|+.+-+.-.-. ..|.|. ....||+|.+.
T Consensus 436 l~C~~Cg~v--~~Cp~Cd~~lt~H~~~---------~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 436 LLCRDCGYI--AECPNCDSPLTLHKAT---------GQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred eecccCCCc--ccCCCCCcceEEecCC---------CeeEeCCCCCCCCCCCCCCCCCCC
Confidence 467777443 5699999988763221 345665 46789999887
No 91
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=44.72 E-value=6.7 Score=30.63 Aligned_cols=18 Identities=33% Similarity=0.722 Sum_probs=13.9
Q ss_pred ccccccccccCCceeccc
Q 022323 240 SGYLACARCSSSGVCLSV 257 (299)
Q Consensus 240 TGYL~CArCSgSGtl~~i 257 (299)
.|-||||-|.|-=+-+..
T Consensus 2 ~G~LPCADC~GI~t~L~L 19 (87)
T PF04170_consen 2 EGTLPCADCPGIKTTLTL 19 (87)
T ss_dssp EEEEEETTSSEEEEEEEE
T ss_pred ccEeECCCCCCeEEEEEE
Confidence 588999999987665444
No 92
>PRK11032 hypothetical protein; Provisional
Probab=43.42 E-value=27 Score=31.14 Aligned_cols=52 Identities=25% Similarity=0.486 Sum_probs=35.6
Q ss_pred HHHHhhhhhhHhhcccccccC----ccccccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCC
Q 022323 219 MLIEANNVEQQEKKRCKYCHG----SGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDV 285 (299)
Q Consensus 219 mvvEinnvkqQEkkRCkYC~G----TGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaG 285 (299)
-.||...+-|.=+..=-|..| .|-|.|-.|.-.-.+..+.++. .||+|.++.
T Consensus 97 TqvEw~el~~dl~h~g~Y~sGEvvg~G~LvC~~Cg~~~~~~~p~~i~---------------pCp~C~~~~ 152 (160)
T PRK11032 97 TQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHHHLAFYTPEVLP---------------LCPKCGHDQ 152 (160)
T ss_pred hHHHHHHHHHHhhhcCeeecceeeecceEEecCCCCEEEecCCCcCC---------------CCCCCCCCe
Confidence 345665555555444556665 8999999999888775554444 599998763
No 93
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=42.17 E-value=13 Score=25.28 Aligned_cols=30 Identities=23% Similarity=0.628 Sum_probs=17.4
Q ss_pred cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCC
Q 022323 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCS 282 (299)
Q Consensus 243 L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCS 282 (299)
..|..|++.-.+.. +.+. . -.++.||++|.
T Consensus 3 i~CP~C~~~f~v~~-~~l~--~-------~~~~vrC~~C~ 32 (37)
T PF13719_consen 3 ITCPNCQTRFRVPD-DKLP--A-------GGRKVRCPKCG 32 (37)
T ss_pred EECCCCCceEEcCH-HHcc--c-------CCcEEECCCCC
Confidence 46778877776511 1111 1 11588999996
No 94
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=40.38 E-value=14 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.506 Sum_probs=17.7
Q ss_pred cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCC
Q 022323 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGD 284 (299)
Q Consensus 243 L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGa 284 (299)
+.|++|...-.+. .++... + ....+||+|...
T Consensus 3 ~~CP~C~~~~~v~-~~~~~~-~--------~~~v~C~~C~~~ 34 (38)
T TIGR02098 3 IQCPNCKTSFRVV-DSQLGA-N--------GGKVRCGKCGHV 34 (38)
T ss_pred EECCCCCCEEEeC-HHHcCC-C--------CCEEECCCCCCE
Confidence 5677777766552 111111 1 136889999753
No 95
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=40.12 E-value=2.5e+02 Score=27.44 Aligned_cols=67 Identities=24% Similarity=0.190 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcccccchhhhhhcCCCccHHHHHHhcCcccc--ccccCcc----------eee--ccCCchhHHHHHHH
Q 022323 155 SLSFISGIILFGGLIAPTLELKLGLGGTSYEDFIRNMHLPMQ--LSQVDPI----------VAS--FSGGAVGVISALML 220 (299)
Q Consensus 155 ~~~~i~~ii~FGGLiAP~lElkLGlGgtsY~dFI~s~hLP~Q--LsqVDPI----------VAS--FsGGAVGVisaLmv 220 (299)
-.++++|+++ |..+|=++|+ +-=.-.+-+|.-+.++||.- +-.++++ ++= -.|=+..|.+|||+
T Consensus 418 ~~g~~~Gl~l-g~~~~~l~e~-ld~~i~~~~~ie~~lglpvLg~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (498)
T TIGR03007 418 LAGLLGGLGA-GIGLAFLLSQ-LRPTVRSVRDLRELTGLPVLGVIPMIATPEERRRRRRRLAAFLASAGLLIAVYGALMA 495 (498)
T ss_pred HHHHHHHHHH-HHHHHHHHHH-hcCcCCCHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555533 5555555665 44344566777777788752 2223331 111 12444467788888
Q ss_pred HHh
Q 022323 221 IEA 223 (299)
Q Consensus 221 vEi 223 (299)
.|+
T Consensus 496 ~~~ 498 (498)
T TIGR03007 496 MEL 498 (498)
T ss_pred HhC
Confidence 874
No 96
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=40.08 E-value=5.2 Score=39.67 Aligned_cols=62 Identities=29% Similarity=0.425 Sum_probs=36.6
Q ss_pred cCCCccHHHHHHhcC------cccc---ccccCcceeeccCCchhHHHHHHHHHhhhhhhHh------hcccccccCccc
Q 022323 178 GLGGTSYEDFIRNMH------LPMQ---LSQVDPIVASFSGGAVGVISALMLIEANNVEQQE------KKRCKYCHGSGY 242 (299)
Q Consensus 178 GlGgtsY~dFI~s~h------LP~Q---LsqVDPIVASFsGGAVGVisaLmvvEinnvkqQE------kkRCkYC~GTGY 242 (299)
+|||.=--|||...+ |=.. ...=|+.-..+.| +|.|=+||+-.-|.++ ...|++|+|+|+
T Consensus 327 nigGiIvIDFIdM~~~~~~~~v~~~l~~~~~~D~~k~~v~~-----~T~lGLvE~TRkr~~~sL~e~~~~~Cp~C~G~G~ 401 (414)
T TIGR00757 327 NLGGIIIIDFIDMKSEKNQRRVLERLKEALRRDRARIQISG-----ISEFGLVEMTRKRLRESLMEVLGTVCPHCSGTGI 401 (414)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCcEEcc-----cCCCcceEEeccccCcChHHHhcCCCCCCcCeeE
Confidence 455555667775332 1111 1234555554433 6788889987655443 367999999988
Q ss_pred cc
Q 022323 243 LA 244 (299)
Q Consensus 243 L~ 244 (299)
..
T Consensus 402 v~ 403 (414)
T TIGR00757 402 VK 403 (414)
T ss_pred Ec
Confidence 53
No 97
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=39.72 E-value=45 Score=24.56 Aligned_cols=34 Identities=18% Similarity=0.360 Sum_probs=26.9
Q ss_pred HHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc
Q 022323 75 LQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKG 115 (299)
Q Consensus 75 v~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~ 115 (299)
++|+-+|..+|+++-|..=|. |.-.||.|..+..
T Consensus 1 ~~elr~ls~~eL~~~l~elk~-------eL~~Lr~q~~~~~ 34 (58)
T PF00831_consen 1 AKELRELSDEELQEKLEELKK-------ELFNLRFQKATGQ 34 (58)
T ss_dssp CHHHCHSHHHHHHHHHHHHHH-------HHHHHHHHHHHSS
T ss_pred CHHHHhCCHHHHHHHHHHHHH-------HHHHHHHHHHhcc
Confidence 368889999999998877554 6778999988743
No 98
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=38.60 E-value=14 Score=35.25 Aligned_cols=17 Identities=35% Similarity=0.989 Sum_probs=15.6
Q ss_pred cccccccCc--------cccccccc
Q 022323 232 KRCKYCHGS--------GYLACARC 248 (299)
Q Consensus 232 kRCkYC~GT--------GYL~CArC 248 (299)
..|++|+++ |...|+.|
T Consensus 2 ~~CpeCg~~~~~~d~~~ge~VC~~C 26 (285)
T COG1405 2 MSCPECGSTNIITDYERGEIVCADC 26 (285)
T ss_pred CCCCCCCCccceeeccCCeEEeccC
Confidence 479999998 99999999
No 99
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=37.65 E-value=17 Score=33.70 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCccHHHHH
Q 022323 142 YVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFI 188 (299)
Q Consensus 142 ~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~lElkLGlGgtsY~dFI 188 (299)
.||++.++.+|...-.++.-.| -.||+++.||.
T Consensus 192 ~l~~~~~~~l~~a~~~vl~~ai--------------~~gg~~~~~~~ 224 (272)
T PRK14810 192 SLSRERLRKLHDAIGEVLREAI--------------ELGGSSVSDYV 224 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH--------------HcCCCcccccc
Confidence 5788888888776655554433 35788888876
No 100
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=37.60 E-value=24 Score=34.34 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=53.2
Q ss_pred cccchhhhhhcCCCccHHHHHHhcCccccccccCcceeeccCCchhHHHHHHHHHhhhhhhH----hhcccccccCc---
Q 022323 168 LIAPTLELKLGLGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVEQQ----EKKRCKYCHGS--- 240 (299)
Q Consensus 168 LiAP~lElkLGlGgtsY~dFI~s~hLP~QLsqVDPIVASFsGGAVGVisaLmvvEinnvkqQ----EkkRCkYC~GT--- 240 (299)
-++++|+-.....-..-+.+.+.+ |=.+.++|++=.|-|...|.-|.-+.|.--+..-... .+..|+-|.+.
T Consensus 121 ~~~~~l~~L~~~~~~~l~~~A~~L-l~~~~~~v~~~~a~Fi~AALqv~wa~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~ 199 (309)
T PRK03564 121 PALAVIENLEKASTQELEDMASAL-LASDFSSVSSDKAPFIWAALSLYWAQMAQQIPGKARAEYGEQRQFCPVCGSMPVS 199 (309)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-hcCCccccchhHHHHHHHHHHHHHHHHHhhCCcccccccccCCCCCCCCCCcchh
Confidence 344555543333333344444443 5667888998888888888888877777666522222 36789988763
Q ss_pred -----------cccccccccCCcee
Q 022323 241 -----------GYLACARCSSSGVC 254 (299)
Q Consensus 241 -----------GYL~CArCSgSGtl 254 (299)
=||.|..|...=-.
T Consensus 200 s~v~~~~~~G~RyL~CslC~teW~~ 224 (309)
T PRK03564 200 SVVQIGTTQGLRYLHCNLCESEWHV 224 (309)
T ss_pred heeeccCCCCceEEEcCCCCCcccc
Confidence 26777777665544
No 101
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.69 E-value=1.8e+02 Score=27.38 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=17.4
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccc
Q 022323 82 QLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKV 118 (299)
Q Consensus 82 ql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~~ 118 (299)
++++++-+.+.-|..-=.++.-....|++...+...+
T Consensus 279 ~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~~~~ 315 (362)
T TIGR01010 279 DYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQLYL 315 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 3444444444444444444444455555555544333
No 102
>PRK10445 endonuclease VIII; Provisional
Probab=36.55 E-value=18 Score=33.35 Aligned_cols=25 Identities=12% Similarity=-0.095 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhc
Q 022323 142 YVTPKTLKQLYLTSLSFISGIILFG 166 (299)
Q Consensus 142 ~lt~~tlk~yy~~~~~~i~~ii~FG 166 (299)
.||++.++.+|...-.+...-|-.|
T Consensus 189 ~Ls~~~~~~L~~~i~~vl~~ai~~g 213 (263)
T PRK10445 189 DLNEAQLDALAHALLDIPRLSYATR 213 (263)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5688888888776665554444333
No 103
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=36.37 E-value=20 Score=25.73 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=6.9
Q ss_pred cCCCCCCCCcc
Q 022323 277 RCPNCSGDVPE 287 (299)
Q Consensus 277 rCpNCSGaGKv 287 (299)
.|.+|...|..
T Consensus 28 ~C~~Cga~~~~ 38 (53)
T TIGR03655 28 ECSTCGASGPV 38 (53)
T ss_pred ECCCCCCCccc
Confidence 57777666543
No 104
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=35.00 E-value=24 Score=38.71 Aligned_cols=20 Identities=5% Similarity=0.247 Sum_probs=14.4
Q ss_pred hhHHHHHhhcHHHHHHHHHh
Q 022323 73 ETLQDFVQMQLKEIEDNIKH 92 (299)
Q Consensus 73 etv~Dfa~mql~EI~dNI~s 92 (299)
-++.||..|.++|..+=++.
T Consensus 429 ~~i~~~~~~~v~~~~~~~~~ 448 (943)
T PRK00349 429 KNIGEVSELSIGEALEFFEN 448 (943)
T ss_pred EEHHHHhcCcHHHHHHHHHh
Confidence 46778888888887665544
No 105
>PHA01745 hypothetical protein
Probab=34.68 E-value=34 Score=33.66 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=27.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccch
Q 022323 135 SSIPFLPYVTPKTLKQLYLTSLSFISGIILFGGLIAPT 172 (299)
Q Consensus 135 S~iPflp~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~ 172 (299)
+.||-++......++.+.-++ +-.+=.|.|||+++|+
T Consensus 102 ~vIPViH~Y~~e~l~~~ldfy-sqy~d~iAfGG~Vp~s 138 (306)
T PHA01745 102 RIIPVIHLYPVREVDEAIDFY-SQYTDYIAFGGIVASS 138 (306)
T ss_pred ceeeEEeecCHHHHHHHHHHH-HhhhhhhhccccccHH
Confidence 678888888888876665333 3334489999999998
No 106
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=33.96 E-value=19 Score=39.44 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=8.9
Q ss_pred CcccCCCCCCCC
Q 022323 274 TTQRCPNCSGDV 285 (299)
Q Consensus 274 gterCpNCSGaG 285 (299)
-...|++|.|..
T Consensus 760 ~~~~C~~C~G~R 771 (943)
T PRK00349 760 VYVPCDVCKGKR 771 (943)
T ss_pred ccccCccccCcc
Confidence 356788888864
No 107
>PRK11712 ribonuclease G; Provisional
Probab=33.92 E-value=7.3 Score=39.67 Aligned_cols=62 Identities=29% Similarity=0.410 Sum_probs=38.1
Q ss_pred cCCCccHHHHHHhcCccc---------cccccCcceeeccCCchhHHHHHHHHHhhhhhhHh------hcccccccCccc
Q 022323 178 GLGGTSYEDFIRNMHLPM---------QLSQVDPIVASFSGGAVGVISALMLIEANNVEQQE------KKRCKYCHGSGY 242 (299)
Q Consensus 178 GlGgtsY~dFI~s~hLP~---------QLsqVDPIVASFsGGAVGVisaLmvvEinnvkqQE------kkRCkYC~GTGY 242 (299)
+|||.=--|||....=.- +.-.=|+--..+. =+|.|=+||+-.-|..+ ...|++|+|+|+
T Consensus 339 ~igGiIviDFidM~~~~~r~~v~~~l~~~l~~D~~k~~v~-----~~T~lGLvEmTRkR~r~sl~~~l~~~Cp~C~G~G~ 413 (489)
T PRK11712 339 NLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTNIN-----GFSQLGLVEMTRKRTRESLEHVLCGECPTCHGRGT 413 (489)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhhcCCCCceEc-----ccCCCceEEEEecccCCChHHHhcCCCCCCCCCCC
Confidence 677777777875432111 1223455444333 36778889987655544 378999999998
Q ss_pred cc
Q 022323 243 LA 244 (299)
Q Consensus 243 L~ 244 (299)
..
T Consensus 414 v~ 415 (489)
T PRK11712 414 VK 415 (489)
T ss_pred cC
Confidence 54
No 108
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.57 E-value=22 Score=33.26 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcccccchhhhhhcCC---Cc--cHHHHHHhc--CccccccccCcceeeccCCchhHHHHHHH----HHhh
Q 022323 156 LSFISGIILFGGLIAPTLELKLGLG---GT--SYEDFIRNM--HLPMQLSQVDPIVASFSGGAVGVISALML----IEAN 224 (299)
Q Consensus 156 ~~~i~~ii~FGGLiAP~lElkLGlG---gt--sY~dFI~s~--hLP~QLsqVDPIVASFsGGAVGVisaLmv----vEin 224 (299)
+.+++.||.|||++.=-.--+-=.. .+ .|+.+|..+ .=|--..++--.+.++..+.-||+++|++ ||.|
T Consensus 24 ~li~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~ 103 (207)
T COG2976 24 ALIVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEAN 103 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhc
Confidence 4566778888888643221111111 22 388888876 34455566667788999999999999986 7777
Q ss_pred hhhh
Q 022323 225 NVEQ 228 (299)
Q Consensus 225 nvkq 228 (299)
|..+
T Consensus 104 ~~d~ 107 (207)
T COG2976 104 NLDK 107 (207)
T ss_pred cHHH
Confidence 7654
No 109
>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]
Probab=31.79 E-value=26 Score=33.35 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=19.6
Q ss_pred hhhhhhHhhcccc--cccCcccccc
Q 022323 223 ANNVEQQEKKRCK--YCHGSGYLAC 245 (299)
Q Consensus 223 innvkqQEkkRCk--YC~GTGYL~C 245 (299)
+..++..+.-+|+ ||.|++-|||
T Consensus 113 ~eKy~~~efG~CPRv~Cn~~~vLPv 137 (242)
T COG5041 113 LEKYKSREFGACPRVYCNGQQVLPV 137 (242)
T ss_pred HHHHhhcccCCCCcccccCcceecc
Confidence 4567888899997 8999999998
No 110
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=31.67 E-value=39 Score=25.92 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=24.7
Q ss_pred HHHHHHhcCccccccccCcceeeccCCchhHHHHHHHHHhhhhh
Q 022323 184 YEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNVE 227 (299)
Q Consensus 184 Y~dFI~s~hLP~QLsqVDPIVASFsGGAVGVisaLmvvEinnvk 227 (299)
|..+.... |.+...=| .+...|-+||+|+++++.|+=++=
T Consensus 6 ~rCl~p~~--~~~~~~C~--~~GVlg~~~giigslqA~eaik~l 45 (84)
T PF05237_consen 6 YRCLFPEP--PESAPTCA--EAGVLGPVVGIIGSLQANEAIKLL 45 (84)
T ss_dssp HHHHHTTS--S--TTSSS--TS-B-HHHHHHHHHHHHHHHHHHH
T ss_pred ehhcCCCC--CccCCCcc--ccccccchHHHHHHHHHHHHHHHH
Confidence 66666555 33333222 347789999999999999986543
No 111
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=31.14 E-value=87 Score=30.44 Aligned_cols=80 Identities=13% Similarity=0.248 Sum_probs=48.4
Q ss_pred EEEeCchhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccccccCCCCC---CCCCCCCCCCC
Q 022323 67 SIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPE---IPSSIPFLPYV 143 (299)
Q Consensus 67 ciiegpetv~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~~~~~~~~ee~~e~pe---~~S~iPflp~l 143 (299)
-|||+|+--.+|++|..++|++=|..=|++.- .|+ .||+-.-+.-.-|++---.+|- .==+.||+|+.
T Consensus 108 Vii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~-------~l~--~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~p~vP~~ 178 (347)
T TIGR00209 108 VICFSPDHSKTLPELSVAALTEIVKTWQEQTA-------ELG--KTYPWVQIFENKGAAMGCSNPHPHGQIWANSFLPNE 178 (347)
T ss_pred EEEeCCCccCChhHCCHHHHHHHHHHHHHHHH-------HHH--hCCcEEEEEeecCcccCcCCCCCceeeeeCCCCChH
Confidence 39999999999999999999997776665543 333 3554322221111221123332 22248999998
Q ss_pred CHHH---HHHHHHHH
Q 022323 144 TPKT---LKQLYLTS 155 (299)
Q Consensus 144 t~~t---lk~yy~~~ 155 (299)
-.+- .+.||..-
T Consensus 179 ~~~e~~~~~~y~~~~ 193 (347)
T TIGR00209 179 VEREDRLQKEYFAEH 193 (347)
T ss_pred HHHHHHHHHHHHHHc
Confidence 6644 45566543
No 112
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=31.09 E-value=25 Score=32.72 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCccHHHHH
Q 022323 141 PYVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFI 188 (299)
Q Consensus 141 p~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~lElkLGlGgtsY~dFI 188 (299)
..||++.++.++...-.++..- +-.|||++.||.
T Consensus 201 ~~Ls~~~~~~L~~~i~~vl~~a--------------i~~gg~~~~~~~ 234 (282)
T PRK13945 201 GQLKKKQLERLREAIIEVLKTS--------------IGAGGTTFSDFR 234 (282)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH--------------HHcCCCcccccc
Confidence 3578888888877666555442 236688888875
No 113
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=30.56 E-value=21 Score=33.62 Aligned_cols=22 Identities=36% Similarity=0.919 Sum_probs=17.7
Q ss_pred hcccccccC--------ccccccccccCCceec
Q 022323 231 KKRCKYCHG--------SGYLACARCSSSGVCL 255 (299)
Q Consensus 231 kkRCkYC~G--------TGYL~CArCSgSGtl~ 255 (299)
...|++|.+ +|.+.|+.| |+++
T Consensus 11 ~~~Cp~Cg~~~iv~d~~~Ge~vC~~C---G~Vl 40 (310)
T PRK00423 11 KLVCPECGSDKLIYDYERGEIVCADC---GLVI 40 (310)
T ss_pred CCcCcCCCCCCeeEECCCCeEeeccc---CCcc
Confidence 457999987 699999999 5553
No 114
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=29.62 E-value=34 Score=30.11 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=7.5
Q ss_pred ccCCCCCCCC
Q 022323 276 QRCPNCSGDV 285 (299)
Q Consensus 276 erCpNCSGaG 285 (299)
..|+||..+=
T Consensus 29 ~~c~~c~~~f 38 (154)
T PRK00464 29 RECLACGKRF 38 (154)
T ss_pred eeccccCCcc
Confidence 5689998863
No 115
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.36 E-value=35 Score=37.43 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=17.8
Q ss_pred ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCC
Q 022323 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDV 285 (299)
Q Consensus 244 ~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaG 285 (299)
.|..|.|.|.+.. +-.-. .+-...|+.|.|..
T Consensus 738 ~C~~C~G~G~~~~-~~~f~---------~~~~~~C~~C~G~R 769 (924)
T TIGR00630 738 RCEACQGDGVIKI-EMHFL---------PDVYVPCEVCKGKR 769 (924)
T ss_pred CCCCCccceEEEE-EccCC---------CCcccCCCCcCCce
Confidence 3666666666532 11111 12367888888863
No 116
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=29.35 E-value=21 Score=28.98 Aligned_cols=37 Identities=27% Similarity=0.689 Sum_probs=20.7
Q ss_pred ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCc
Q 022323 244 ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVP 286 (299)
Q Consensus 244 ~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGK 286 (299)
.|.+|.|.|..+...-.. .++=-|-...|++|.|.|=
T Consensus 7 ~c~~c~g~g~al~~~~s~------~~~G~pvfk~c~rcgg~G~ 43 (95)
T PF03589_consen 7 SCRRCAGDGAALDMKQSK------AQFGVPVFKDCERCGGRGY 43 (95)
T ss_pred CcCccCCcceeccHHHhH------hccCCchhhhhhhhcCCCC
Confidence 466666666443221111 1223455778999999883
No 117
>PLN02643 ADP-glucose phosphorylase
Probab=28.95 E-value=91 Score=30.08 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=49.4
Q ss_pred EEEeCchhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccccccccccccCCCCC---CCCCCCCCCCC
Q 022323 67 SIIEGPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKVIDESGEEEASEMPE---IPSSIPFLPYV 143 (299)
Q Consensus 67 ciiegpetv~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~~~~~~~~ee~~e~pe---~~S~iPflp~l 143 (299)
-|||+|+-..+|++|..++|.+=|..=| +.+|.|+=+-|||-.-+.-.-|.+---.++- +--+.||+|+.
T Consensus 110 Vii~sp~H~~~l~~~~~~~i~~v~~~~~-------~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~vP~~ 182 (336)
T PLN02643 110 VVIETPVHSVQLSDLPARHIGEVLKAYK-------KRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPVVPPS 182 (336)
T ss_pred EEEeCCccCCChHHCCHHHHHHHHHHHH-------HHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCcCChH
Confidence 4999999999999999999998666533 3355555555555433321111111122221 11237899887
Q ss_pred CH---HHHHHHHHHH
Q 022323 144 TP---KTLKQLYLTS 155 (299)
Q Consensus 144 t~---~tlk~yy~~~ 155 (299)
-. +..+.||...
T Consensus 183 ~~~el~~~~~y~~~~ 197 (336)
T PLN02643 183 VSARLDGSKEYFEKT 197 (336)
T ss_pred HHHHHHHHHHHHHHh
Confidence 55 4556677654
No 118
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=28.95 E-value=27 Score=41.10 Aligned_cols=19 Identities=42% Similarity=1.078 Sum_probs=0.0
Q ss_pred ccccccCcccc------------ccccccCC
Q 022323 233 RCKYCHGSGYL------------ACARCSSS 251 (299)
Q Consensus 233 RCkYC~GTGYL------------~CArCSgS 251 (299)
||+.|.|+||. +|..|.|+
T Consensus 1609 rC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~ 1639 (1809)
T PRK00635 1609 QCSDCWGLGYQWIDRAFYALEKRPCPTCSGF 1639 (1809)
T ss_pred CCCCCccCceEEEecccCCCcccCCCCCCCc
No 119
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=27.25 E-value=28 Score=31.81 Aligned_cols=22 Identities=45% Similarity=0.632 Sum_probs=16.3
Q ss_pred cccCcceeeccCCchhHHHHHHHH
Q 022323 198 SQVDPIVASFSGGAVGVISALMLI 221 (299)
Q Consensus 198 sqVDPIVASFsGGAVGVisaLmvv 221 (299)
+..| .|||.||.|=|++-|.|+
T Consensus 156 s~FD--~~SFiGGIVL~LGv~aI~ 177 (186)
T PF05283_consen 156 STFD--AASFIGGIVLTLGVLAII 177 (186)
T ss_pred CCCc--hhhhhhHHHHHHHHHHHH
Confidence 4456 589999999777766554
No 120
>PRK04406 hypothetical protein; Provisional
Probab=27.00 E-value=2.4e+02 Score=22.12 Aligned_cols=34 Identities=12% Similarity=0.369 Sum_probs=21.9
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 022323 82 QLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (299)
Q Consensus 82 ql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~ 117 (299)
-++++-+=|..-...|=-|-.++|.|+ +|+++.+
T Consensus 26 tIe~LN~~v~~Qq~~I~~L~~ql~~L~--~rl~~~~ 59 (75)
T PRK04406 26 TIEELNDALSQQQLLITKMQDQMKYVV--GKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhc
Confidence 356666666666666777777888873 4555544
No 121
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=26.88 E-value=36 Score=31.43 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCccHHHHH
Q 022323 142 YVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFI 188 (299)
Q Consensus 142 ~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~lElkLGlGgtsY~dFI 188 (299)
.||++-++.+|...-.++-..| -.||++..||.
T Consensus 193 ~Ls~~~~~~L~~~~~~vl~~ai--------------~~gg~t~~~~~ 225 (274)
T PRK01103 193 SLSRAEAERLVDAIKAVLAEAI--------------EQGGTTLRDYV 225 (274)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH--------------HcCCCcccccc
Confidence 4678888888776665554433 34577766654
No 122
>PRK00295 hypothetical protein; Provisional
Probab=26.00 E-value=2.5e+02 Score=21.50 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=24.4
Q ss_pred HHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 022323 78 FVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (299)
Q Consensus 78 fa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~ 117 (299)
|..--++++-+=|..-...|=.|-.++|.|+= |++..+
T Consensus 16 ~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~--rl~~~~ 53 (68)
T PRK00295 16 FQDDTIQALNDVLVEQQRVIERLQLQMAALIK--RQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhh
Confidence 44444667777666666777777788888843 444433
No 123
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=25.91 E-value=36 Score=31.68 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 022323 142 YVTPKTLKQLYLTSLSFISGII 163 (299)
Q Consensus 142 ~lt~~tlk~yy~~~~~~i~~ii 163 (299)
.||++.++.+|...-.++.--|
T Consensus 181 ~Ls~~~~~~L~~~i~~vl~~ai 202 (269)
T PRK14811 181 SLKAPEARRLYRAIREVMAEAV 202 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 5688888888877666555433
No 124
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=25.46 E-value=33 Score=34.20 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=24.5
Q ss_pred cCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCccccc
Q 022323 249 SSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELPL 290 (299)
Q Consensus 249 SgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKvlp~ 290 (299)
+.-|.++.+++=.. .++.=--++.||.|.|+|++.-.
T Consensus 369 T~lGLvE~TRkr~~-----~sL~e~~~~~Cp~C~G~G~v~s~ 405 (414)
T TIGR00757 369 SEFGLVEMTRKRLR-----ESLMEVLGTVCPHCSGTGIVKTS 405 (414)
T ss_pred CCCcceEEeccccC-----cChHHHhcCCCCCCcCeeEEccH
Confidence 35788777665543 22222246789999999998753
No 125
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=25.32 E-value=2.5e+02 Score=30.03 Aligned_cols=44 Identities=39% Similarity=0.502 Sum_probs=25.5
Q ss_pred chhHHHHHhhcHHHHHH--HHHhh-----hhhhHHHHHHHHHH-----HHHHhhhc
Q 022323 72 PETLQDFVQMQLKEIED--NIKHR-----RNRIFFLMEELRRL-----RVQQRIKG 115 (299)
Q Consensus 72 petv~Dfa~mql~EI~d--NI~sR-----rnKIFllmEEVRRL-----RiQqrik~ 115 (299)
|=|-+..|+||-+|++| ||.++ =+-|-+.-.|+|-| |.|.+...
T Consensus 124 P~s~~Eia~m~~~el~~~L~~~~~i~~~mi~~i~~~~~Eir~Lr~~~~~l~~~~~~ 179 (582)
T PF03276_consen 124 PVSAQEIAQMQRDELEDVLNFQGQILEQMIDDIGMQQREIRDLRETIQRLQIRGLG 179 (582)
T ss_pred CccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 34566778888777777 33333 23344444588888 45544443
No 126
>PHA03029 hypothetical protein; Provisional
Probab=25.03 E-value=55 Score=27.05 Aligned_cols=19 Identities=26% Similarity=0.770 Sum_probs=14.8
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 022323 84 KEIEDNIKHRRNRIFFLME 102 (299)
Q Consensus 84 ~EI~dNI~sRrnKIFllmE 102 (299)
..|.+||+|||.-....|.
T Consensus 39 aai~qnirsrrkg~ywfln 57 (92)
T PHA03029 39 AAIDQNIRSRRKGLYWFLN 57 (92)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 4578999999988766654
No 127
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=24.77 E-value=26 Score=31.92 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=22.0
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHHHhcccccc
Q 022323 137 IPFLPYV-TPKTLKQLYLTSLSFISGIILFGGLIAP 171 (299)
Q Consensus 137 iPflp~l-t~~tlk~yy~~~~~~i~~ii~FGGLiAP 171 (299)
+|.||.+ .+.... ++.+++....++.+||.+.|=
T Consensus 153 iPllpy~~~~~~~~-~~~s~~~~~~aL~~~G~~~a~ 187 (218)
T cd02432 153 LPLLAILLAPAAWK-VPVTIIATLLALALTGYVSAR 187 (218)
T ss_pred HHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 6655553 233333 666777778888889988773
No 128
>PHA02683 ORF078 thioredoxin-like protein; Provisional
Probab=24.63 E-value=58 Score=26.38 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=27.0
Q ss_pred EEeCchhHHHHHhhc---HHHHHHHHHhhhhhhHH---HHHHHHHH
Q 022323 68 IIEGPETLQDFVQMQ---LKEIEDNIKHRRNRIFF---LMEELRRL 107 (299)
Q Consensus 68 iiegpetv~Dfa~mq---l~EI~dNI~sRrnKIFl---lmEEVRRL 107 (299)
|.|.+|+++=...=| ++-+.+=..+=|||-|+ |-+|+||.
T Consensus 28 l~eD~~~ikm~L~sqP~k~~iLk~FL~~~RNKt~~~kiLD~EirRv 73 (75)
T PHA02683 28 INEDRENIRMVLESQPNKLRILKEFLATCRNKTFIYKILDDEIRRV 73 (75)
T ss_pred HHcCHHHHHHHHHcCccHHHHHHHHHHHHhccchhhhhcCHHHHHh
Confidence 456666665444434 44556677888999884 78999984
No 129
>PRK02793 phi X174 lysis protein; Provisional
Probab=24.46 E-value=2.9e+02 Score=21.31 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=24.7
Q ss_pred HhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 022323 79 VQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (299)
Q Consensus 79 a~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~ 117 (299)
-.--++++-+=+..-+..|--|-+++|.|+- ||+..+
T Consensus 20 Qe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~--rl~~~~ 56 (72)
T PRK02793 20 QEITIEELNVTVTAHEMEMAKLRDHLRLLTE--KLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhc
Confidence 3334667777777777778788888888853 455543
No 130
>PRK02119 hypothetical protein; Provisional
Probab=24.42 E-value=3.4e+02 Score=21.06 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=24.7
Q ss_pred HHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 022323 78 FVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (299)
Q Consensus 78 fa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~ 117 (299)
|-.-.++++-+=|..-+..|=.|-+++|+|+- ||+..+
T Consensus 20 ~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~--rl~~~~ 57 (73)
T PRK02119 20 FQENLLEELNQALIEQQFVIDKMQVQLRYMAN--KLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhc
Confidence 33344677777777777777777888888843 455543
No 131
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.25 E-value=41 Score=31.20 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCccHHHHH
Q 022323 142 YVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFI 188 (299)
Q Consensus 142 ~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~lElkLGlGgtsY~dFI 188 (299)
.||++.++.+|...-.++.. =+-.||+++.||.
T Consensus 193 ~Ls~~~~~~L~~~i~~vL~~--------------ai~~gg~~~~~~~ 225 (272)
T TIGR00577 193 SLSKEECELLHRAIKEVLRK--------------AIEMGGTTIRDYS 225 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHH--------------HHHcCCCcccccc
Confidence 56888888887766655444 3446788877764
No 132
>PRK11712 ribonuclease G; Provisional
Probab=24.16 E-value=39 Score=34.63 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=21.4
Q ss_pred CCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcccc
Q 022323 250 SSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPELP 289 (299)
Q Consensus 250 gSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKvlp 289 (299)
.-|.+..+++=.. +++.=--++.||.|.|+|++.-
T Consensus 382 ~lGLvEmTRkR~r-----~sl~~~l~~~Cp~C~G~G~v~s 416 (489)
T PRK11712 382 QLGLVEMTRKRTR-----ESLEHVLCGECPTCHGRGTVKT 416 (489)
T ss_pred CCceEEEEecccC-----CChHHHhcCCCCCCCCCCCcCC
Confidence 4566655544432 1122224678999999999864
No 133
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=23.69 E-value=32 Score=32.60 Aligned_cols=17 Identities=24% Similarity=0.743 Sum_probs=13.9
Q ss_pred HhhcccccccCcccccc
Q 022323 229 QEKKRCKYCHGSGYLAC 245 (299)
Q Consensus 229 QEkkRCkYC~GTGYL~C 245 (299)
+.-..|+-|+|||+.|=
T Consensus 36 ~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 36 RDSVTCPTCQGTGRIPR 52 (238)
T ss_pred CCCCcCCCCcCCccCCc
Confidence 35568999999999874
No 134
>PRK00846 hypothetical protein; Provisional
Probab=23.32 E-value=3.7e+02 Score=21.53 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=24.6
Q ss_pred HHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccc
Q 022323 78 FVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLKV 118 (299)
Q Consensus 78 fa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~~ 118 (299)
|..--++++-+=|..-+..|=.|-+.+|+|+- |+|..+.
T Consensus 24 fQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~--rL~~~~~ 62 (77)
T PRK00846 24 FQEQALTELSEALADARLTGARNAELIRHLLE--DLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcc
Confidence 33334666666666666666677777787764 6666553
No 135
>PF14353 CpXC: CpXC protein
Probab=22.98 E-value=43 Score=27.21 Aligned_cols=43 Identities=19% Similarity=0.391 Sum_probs=26.1
Q ss_pred cccccccCCceecccCCccCCCCCCCC------CCCC-CcccCCCCCCCCccc
Q 022323 243 LACARCSSSGVCLSVDPISTSNASNGP------LRVP-TTQRCPNCSGDVPEL 288 (299)
Q Consensus 243 L~CArCSgSGtl~~idpvS~~~g~~~p------l~cP-gterCpNCSGaGKvl 288 (299)
+.|+.|...+....-.-+.. +.+| +.=. -..+||+|-..+.+-
T Consensus 2 itCP~C~~~~~~~v~~~I~~---~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINA---DEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcC---cCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 67888888887755433332 2232 1111 367799998888764
No 136
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=22.72 E-value=49 Score=32.49 Aligned_cols=44 Identities=34% Similarity=0.520 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHH---Hhcccccchhhhhh-----cCCCccHHHHHHhc
Q 022323 148 LKQLYLTSLSFISGII---LFGGLIAPTLELKL-----GLGGTSYEDFIRNM 191 (299)
Q Consensus 148 lk~yy~~~~~~i~~ii---~FGGLiAP~lElkL-----GlGgtsY~dFI~s~ 191 (299)
.|.|...-++.++|-. +.|||.||.+.-=| |+|.+.-.-|+-++
T Consensus 3 ~~R~~~ig~A~v~Gg~ligltgGLAAPliaaglgal~~g~G~~~~a~~Lg~~ 54 (345)
T PF05277_consen 3 WKRYLKIGLAAVGGGALIGLTGGLAAPLIAAGLGALFGGLGATAAAAFLGST 54 (345)
T ss_pred hhhhhhhhhhhhcchHHHHhccchhHHHHHHHHHhhccccchhHHHHHHHHh
Confidence 3455555555555433 45799999998877 34554444466543
No 137
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=22.42 E-value=1.9e+02 Score=21.78 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=24.8
Q ss_pred HHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Q 022323 75 LQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRI 113 (299)
Q Consensus 75 v~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqri 113 (299)
..|+-+|..+|+++.|.+-|. |.=.||+|+-.
T Consensus 3 ~~elr~ls~~eL~~~l~~lkk-------eL~~lR~~~~~ 34 (66)
T PRK00306 3 AKELRELSVEELNEKLLELKK-------ELFNLRFQKAT 34 (66)
T ss_pred HHHHhhCCHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 568999999999998777665 55578888754
No 138
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=22.26 E-value=1.3e+02 Score=31.36 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=25.3
Q ss_pred HHHHHhhcHHHHHHH--------HHhh--hhhhHHHHHHHHHHHHHHh
Q 022323 75 LQDFVQMQLKEIEDN--------IKHR--RNRIFFLMEELRRLRVQQR 112 (299)
Q Consensus 75 v~Dfa~mql~EI~dN--------I~sR--rnKIFllmEEVRRLRiQqr 112 (299)
-|||||| ++|||.| |.+. -|-|=+|.-||-||--..|
T Consensus 443 kqd~akm-l~e~~~~~~~e~le~fml~~GEnivd~lG~EvDRlEkel~ 489 (503)
T KOG2802|consen 443 KQDFAKM-LQEIQEVKTPEELETFMLKHGENIVDTLGAEVDRLEKELK 489 (503)
T ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHcchHHHHHhhhHHHHHHHHHH
Confidence 4799998 6777754 4333 4667788889998864443
No 139
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.15 E-value=41 Score=29.47 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=15.5
Q ss_pred CCCCCCCcccCCCCCCCCccccce
Q 022323 268 GPLRVPTTQRCPNCSGDVPELPLH 291 (299)
Q Consensus 268 ~pl~cPgterCpNCSGaGKvlp~~ 291 (299)
+|+..--+.||||| |.||+.--|
T Consensus 14 ~pi~~Gl~grCP~C-GeGrLF~gF 36 (126)
T COG5349 14 TPIKRGLRGRCPRC-GEGRLFRGF 36 (126)
T ss_pred cHHHHHhcCCCCCC-CCchhhhhh
Confidence 44445568999999 777765443
No 140
>COG4044 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.90 E-value=61 Score=31.06 Aligned_cols=28 Identities=36% Similarity=0.687 Sum_probs=24.7
Q ss_pred ccchhhhhhcCCCccHHHHHHhc----Ccccc
Q 022323 169 IAPTLELKLGLGGTSYEDFIRNM----HLPMQ 196 (299)
Q Consensus 169 iAP~lElkLGlGgtsY~dFI~s~----hLP~Q 196 (299)
+-|..|||.++|++..-|-+|+. |||++
T Consensus 108 lvply~Lk~~~gekpvrqi~r~FG~V~~lPve 139 (247)
T COG4044 108 LVPLYELKRTFGEKPVRQIIRRFGWVDHLPVE 139 (247)
T ss_pred cccHHHHHhccCCCcHHHHHHHcCCcccCceE
Confidence 37999999999999988888875 89988
No 141
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.76 E-value=1.8e+02 Score=22.97 Aligned_cols=37 Identities=24% Similarity=0.620 Sum_probs=23.4
Q ss_pred hHHHHHhhc--HHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 022323 74 TLQDFVQMQ--LKEIEDNIKHRRNRIFFLMEELRRLRVQQR 112 (299)
Q Consensus 74 tv~Dfa~mq--l~EI~dNI~sRrnKIFllmEEVRRLRiQqr 112 (299)
++.|+.++. |+.=-..|++|+++ ++|+++..|+-+.+
T Consensus 47 s~~eL~~LE~~Le~aL~~VR~rK~~--~l~~~i~~l~~ke~ 85 (100)
T PF01486_consen 47 SLKELQQLEQQLESALKRVRSRKDQ--LLMEQIEELKKKER 85 (100)
T ss_pred chHHHHHHHHhhhhhHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 455555543 55556678888888 56777776665443
No 142
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=21.74 E-value=1.2e+02 Score=26.37 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=24.9
Q ss_pred chhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 022323 72 PETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRV 109 (299)
Q Consensus 72 petv~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRi 109 (299)
--|+.+..+|+=+|+++.... .----||+|||.-
T Consensus 90 ~~tLe~Llemsd~el~~~l~~----~g~~~EE~rRL~~ 123 (129)
T PF13543_consen 90 VLTLEALLEMSDEELKEILNR----CGAREEECRRLCR 123 (129)
T ss_pred hcCHHHHHhCCHHHHHHHHHH----hCCCHHHHHHHHH
Confidence 457889999998888886554 2233799999863
No 143
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=21.30 E-value=48 Score=22.49 Aligned_cols=30 Identities=20% Similarity=0.575 Sum_probs=17.8
Q ss_pred cccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCC
Q 022323 243 LACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCS 282 (299)
Q Consensus 243 L~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCS 282 (299)
+.|.+|.+.=.+.. +++. +. ..+.+|++|.
T Consensus 3 i~Cp~C~~~y~i~d-~~ip-~~--------g~~v~C~~C~ 32 (36)
T PF13717_consen 3 ITCPNCQAKYEIDD-EKIP-PK--------GRKVRCSKCG 32 (36)
T ss_pred EECCCCCCEEeCCH-HHCC-CC--------CcEEECCCCC
Confidence 56888888776611 1122 11 1478899996
No 144
>PRK00736 hypothetical protein; Provisional
Probab=21.05 E-value=3.7e+02 Score=20.54 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=26.0
Q ss_pred HHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 022323 78 FVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (299)
Q Consensus 78 fa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~ 117 (299)
|-..-++++-+=|..-...|=.|.+++|.|+= |++..+
T Consensus 16 fqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~--rl~~~~ 53 (68)
T PRK00736 16 EQEKTIEELSDQLAEQWKTVEQMRKKLDALTE--RFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 44555777777777777778888888988854 344433
No 145
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=20.84 E-value=1.7e+02 Score=21.70 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=25.1
Q ss_pred cHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 022323 82 QLKEIEDNIKHRRNRIFFLMEELRRLRVQ 110 (299)
Q Consensus 82 ql~EI~dNI~sRrnKIFllmEEVRRLRiQ 110 (299)
.+++.+.+++.-++||=+|.+++++|+-+
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~ 62 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQR 62 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999997643
No 146
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.55 E-value=2.4e+02 Score=26.36 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc-ccc
Q 022323 85 EIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK-VID 120 (299)
Q Consensus 85 EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~-~~~ 120 (299)
+.+..-..|+++|-.++||+++|+=+---...+ +|.
T Consensus 71 qa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 71 QAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444567888999999988887654333334 443
No 147
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=20.48 E-value=66 Score=31.22 Aligned_cols=35 Identities=9% Similarity=0.213 Sum_probs=28.8
Q ss_pred CceE--EEeCchhHHHHHhhcHHHHHHHHHhhhhhhH
Q 022323 64 NNFS--IIEGPETLQDFVQMQLKEIEDNIKHRRNRIF 98 (299)
Q Consensus 64 ~~fc--iiegpetv~Dfa~mql~EI~dNI~sRrnKIF 98 (299)
-|+| |||+|+-..+|+.|..++|++=|..=|++.-
T Consensus 103 ~G~~eViv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~ 139 (346)
T PRK11720 103 RGTSRVICFSPDHSKTLPELSVAALREVVDTWQEQTA 139 (346)
T ss_pred ceEEEEEEECCCcCCChhHCCHHHHHHHHHHHHHHHH
Confidence 3455 9999999999999999999997776666543
No 148
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=20.46 E-value=4.1e+02 Score=25.52 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHH
Q 022323 141 PYVTPKTLKQLY 152 (299)
Q Consensus 141 p~lt~~tlk~yy 152 (299)
|.+.-+++++=.
T Consensus 293 ~~ldl~~I~~Qs 304 (340)
T PF12794_consen 293 PELDLEQISQQS 304 (340)
T ss_pred cccCHHHHHHHH
Confidence 344445554443
No 149
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=20.46 E-value=43 Score=30.58 Aligned_cols=19 Identities=42% Similarity=0.649 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcccccchh
Q 022323 155 SLSFISGIILFGGLIAPTL 173 (299)
Q Consensus 155 ~~~~i~~ii~FGGLiAP~l 173 (299)
-+|||+||||.-||+|=++
T Consensus 160 ~~SFiGGIVL~LGv~aI~f 178 (186)
T PF05283_consen 160 AASFIGGIVLTLGVLAIIF 178 (186)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 4689999999999998654
No 150
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.43 E-value=1.3e+02 Score=23.07 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=28.2
Q ss_pred hhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhc
Q 022323 73 ETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKG 115 (299)
Q Consensus 73 etv~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~ 115 (299)
+--+|+-.|.++|+++ +|-+|=.|+-|+|=...-|.
T Consensus 13 ~ig~dLs~lSv~EL~~-------RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 13 EIGEDLSLLSVEELEE-------RIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred ccCCCchhcCHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3357899999999987 67788889999886665554
No 151
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=20.43 E-value=61 Score=24.37 Aligned_cols=27 Identities=33% Similarity=0.918 Sum_probs=19.0
Q ss_pred hhhhhHhhcccccccCc-cccccccccCCc
Q 022323 224 NNVEQQEKKRCKYCHGS-GYLACARCSSSG 252 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GT-GYL~CArCSgSG 252 (299)
+.++...+..|.+|.-+ | +|-.|.-.+
T Consensus 29 ~~~~~~~~~~C~~C~~~~G--a~i~C~~~~ 56 (90)
T PF13771_consen 29 KEIKRRRKLKCSICKKKGG--ACIGCSHPG 56 (90)
T ss_pred HHHHHHhCCCCcCCCCCCC--eEEEEeCCC
Confidence 34556677899999998 6 666665443
No 152
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=20.32 E-value=2e+02 Score=22.13 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=24.6
Q ss_pred HHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 022323 75 LQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIK 114 (299)
Q Consensus 75 v~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik 114 (299)
..|+-+|..+|+++-|..-|. |.=.||.|+...
T Consensus 6 ~~elr~ls~~eL~~~l~elk~-------elf~LRfq~atg 38 (67)
T CHL00154 6 ITDIIDLTDSEISEEIIKTKK-------ELFDLRLKKATR 38 (67)
T ss_pred HHHHHhCCHHHHHHHHHHHHH-------HHHHHHHHHHhC
Confidence 578889999999987776655 444788887653
No 153
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=20.28 E-value=78 Score=27.41 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022323 132 EIPSSIPFLPYVTPKTLKQLYLTSLSFISGI 162 (299)
Q Consensus 132 e~~S~iPflp~lt~~tlk~yy~~~~~~i~~i 162 (299)
.|..+|=+-||++..|+=.++.-.+.++.|+
T Consensus 86 RYG~~Vly~Pp~~~~t~~LW~~P~lll~~G~ 116 (126)
T TIGR03147 86 RFGDFVLYNPPFKWQTLLLWLLPVLLLLLAF 116 (126)
T ss_pred hcCCeEEecCCCCcchHHHHHHHHHHHHHHH
Confidence 3899999999999999877666555555544
No 154
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=20.19 E-value=1.9e+02 Score=21.16 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=23.6
Q ss_pred HHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 022323 76 QDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIK 114 (299)
Q Consensus 76 ~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik 114 (299)
.|+-+|..+||++-|.+-|. |.=.||.|+...
T Consensus 1 ~eir~ls~~eL~~~l~~l~~-------elf~Lr~q~~~~ 32 (57)
T cd00427 1 KELREKSDEELQEKLDELKK-------ELFNLRFQKATG 32 (57)
T ss_pred ChHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHC
Confidence 37888999999987766554 556778887654
Done!