Query 022323
Match_columns 299
No_of_seqs 44 out of 46
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 03:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ctt_A DNAJ homolog subfamily 97.6 2E-05 7E-10 60.9 1.5 33 224-256 21-59 (104)
2 1exk_A DNAJ protein; extended 97.5 2.2E-05 7.4E-10 57.3 1.2 31 225-255 5-41 (79)
3 1exk_A DNAJ protein; extended 97.3 8.6E-05 2.9E-09 54.1 2.1 38 231-287 28-76 (79)
4 2ctt_A DNAJ homolog subfamily 97.3 0.00012 4.2E-09 56.5 3.1 38 231-287 45-93 (104)
5 1nlt_A Protein YDJ1, mitochond 96.9 0.00043 1.5E-08 61.1 2.8 32 225-256 32-68 (248)
6 1nlt_A Protein YDJ1, mitochond 96.8 0.00025 8.7E-09 62.6 0.9 40 231-287 54-108 (248)
7 3lcz_A YCZA, inhibitor of trap 95.3 0.0062 2.1E-07 43.7 1.8 27 228-254 6-35 (53)
8 3lcz_A YCZA, inhibitor of trap 94.4 0.017 5.8E-07 41.4 1.9 28 242-288 9-36 (53)
9 2bx9_A Anti-trap, AT, tryptoph 93.8 0.027 9.1E-07 40.4 1.9 13 276-288 24-36 (53)
10 2bx9_A Anti-trap, AT, tryptoph 91.9 0.058 2E-06 38.6 1.6 25 231-255 9-36 (53)
11 2fiy_A Protein FDHE homolog; F 85.6 0.52 1.8E-05 43.5 3.5 60 179-239 128-190 (309)
12 1dl6_A Transcription factor II 54.0 5.8 0.0002 28.3 1.7 24 230-256 10-41 (58)
13 1erd_A Pheromone ER-2; NMR {Eu 51.1 2.2 7.7E-05 29.4 -0.8 17 229-245 12-28 (40)
14 1ryq_A DNA-directed RNA polyme 43.3 11 0.00037 28.6 1.8 26 238-284 7-32 (69)
15 4bbr_M Transcription initiatio 38.9 11 0.00037 34.7 1.5 23 231-256 21-53 (345)
16 1btq_A BAND 3 anion transport 38.9 8.8 0.0003 24.3 0.6 18 153-170 8-25 (26)
17 1pft_A TFIIB, PFTFIIBN; N-term 36.4 11 0.00037 25.4 0.8 16 233-248 7-30 (50)
18 2kz3_A Putative uncharacterize 35.9 18 0.00063 27.6 2.1 32 72-110 25-56 (83)
19 1vq8_Z 50S ribosomal protein L 34.8 13 0.00044 28.6 1.1 25 227-251 23-54 (83)
20 2pk7_A Uncharacterized protein 33.2 14 0.00048 27.5 1.1 21 228-248 5-32 (69)
21 2hf1_A Tetraacyldisaccharide-1 32.9 13 0.00045 27.6 0.8 19 230-248 7-32 (68)
22 1ee8_A MUTM (FPG) protein; bet 32.8 17 0.00058 32.4 1.7 31 142-186 181-211 (266)
23 2jny_A Uncharacterized BCR; st 32.6 14 0.00047 27.5 0.9 23 227-249 6-35 (67)
24 2kpi_A Uncharacterized protein 32.1 12 0.00042 26.7 0.5 22 228-249 7-35 (56)
25 1odh_A MGCM1; transcription fa 31.6 16 0.00055 32.1 1.3 47 228-290 70-125 (174)
26 2jr6_A UPF0434 protein NMA0874 30.8 14 0.00049 27.3 0.8 19 230-248 7-32 (68)
27 2xzf_A Formamidopyrimidine-DNA 29.5 15 0.0005 32.8 0.7 32 142-187 191-222 (271)
28 3k7a_M Transcription initiatio 26.8 20 0.0007 32.5 1.2 22 231-255 21-52 (345)
29 2js4_A UPF0434 protein BB2007; 26.5 20 0.00067 26.8 0.8 21 229-249 6-33 (70)
30 1k82_A Formamidopyrimidine-DNA 26.5 18 0.0006 32.3 0.7 33 142-188 188-220 (268)
31 3h3g_B Parathyroid hormone-rel 26.3 28 0.00096 22.0 1.4 15 90-104 4-20 (24)
32 1tu3_F RAB GTPase binding effe 26.2 17 0.00058 28.5 0.4 19 70-88 29-54 (79)
33 2bx2_L Ribonuclease E, RNAse E 26.1 18 0.00062 35.8 0.8 10 234-243 411-420 (517)
34 3u6p_A Formamidopyrimidine-DNA 25.5 18 0.00061 32.4 0.5 33 142-188 193-225 (273)
35 2j7a_C Cytochrome C quinol deh 25.4 9.5 0.00033 30.9 -1.2 23 230-252 39-73 (159)
36 4b4t_K 26S protease regulatory 23.9 73 0.0025 30.3 4.4 38 71-108 53-90 (428)
37 3lhn_A Lipoprotein; structural 23.7 18 0.00062 29.5 0.2 18 240-257 34-51 (126)
38 2lq6_A Bromodomain-containing 23.6 16 0.00056 27.8 -0.1 28 223-250 9-36 (87)
39 3h0g_L DNA-directed RNA polyme 22.2 41 0.0014 25.0 1.8 9 275-283 38-46 (63)
40 3efg_A Protein SLYX homolog; x 21.6 1.1E+02 0.0038 23.0 4.2 38 78-117 25-62 (78)
41 1ft5_A Cytochrome C554; heme-s 21.2 20 0.00067 31.0 -0.1 15 229-243 55-69 (211)
42 2ygr_A Uvrabc system protein A 20.8 40 0.0014 35.9 2.1 30 230-259 274-317 (993)
43 3ctk_A RIP;, rRNA N-glycosidas 20.3 26 0.00087 31.1 0.5 21 171-192 2-22 (248)
No 1
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=2e-05 Score=60.90 Aligned_cols=33 Identities=24% Similarity=0.566 Sum_probs=27.0
Q ss_pred hhhhhHhhcccccccCcc------ccccccccCCceecc
Q 022323 224 NNVEQQEKKRCKYCHGSG------YLACARCSSSGVCLS 256 (299)
Q Consensus 224 nnvkqQEkkRCkYC~GTG------YL~CArCSgSGtl~~ 256 (299)
..++.++.+.|..|+|+| .-.|..|.|+|.+..
T Consensus 21 ~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~ 59 (104)
T 2ctt_A 21 KEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETI 59 (104)
T ss_dssp TTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEE
T ss_pred EEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEE
Confidence 345677889999999998 468999999998743
No 2
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.52 E-value=2.2e-05 Score=57.35 Aligned_cols=31 Identities=32% Similarity=0.767 Sum_probs=25.4
Q ss_pred hhhhHhhcccccccCccc------cccccccCCceec
Q 022323 225 NVEQQEKKRCKYCHGSGY------LACARCSSSGVCL 255 (299)
Q Consensus 225 nvkqQEkkRCkYC~GTGY------L~CArCSgSGtl~ 255 (299)
.++.+..+.|..|+|+|+ -.|..|.|+|.+.
T Consensus 5 ~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 41 (79)
T 1exk_A 5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQ 41 (79)
T ss_dssp SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEE
T ss_pred EEEcccceECCCCcccccCCCccCCCCCCCcCeEEEE
Confidence 345667789999999996 5799999999874
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.30 E-value=8.6e-05 Score=54.15 Aligned_cols=38 Identities=32% Similarity=0.870 Sum_probs=32.1
Q ss_pred hcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
...|+.|+|+|+. +|..|.|+|.+. +..|+.|.|.|.+
T Consensus 28 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-------------------~~~C~~C~G~G~~ 76 (79)
T 1exk_A 28 PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-------------------KDPCNKCHGHGRV 76 (79)
T ss_dssp CEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-------------------SSBCGGGTTSSEE
T ss_pred CCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-------------------CCcCCCCCCeEEE
Confidence 4689999999975 899999999861 3479999999976
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.30 E-value=0.00012 Score=56.49 Aligned_cols=38 Identities=34% Similarity=0.865 Sum_probs=32.0
Q ss_pred hcccccccCcccc-----------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGYL-----------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGYL-----------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
.+.|+.|+|+|+. +|.+|.|+|.+. +..|+.|.|.|.+
T Consensus 45 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-------------------~~~C~~C~G~G~v 93 (104)
T 2ctt_A 45 VQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-------------------ISPCVVCRGAGQA 93 (104)
T ss_dssp CEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-------------------SSCCSSSSSCSEE
T ss_pred CccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-------------------CCcCCCCCCeeEE
Confidence 4789999999975 799999999862 3579999999976
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.88 E-value=0.00043 Score=61.13 Aligned_cols=32 Identities=25% Similarity=0.690 Sum_probs=24.8
Q ss_pred hhhhHhhcccccccCcc-----ccccccccCCceecc
Q 022323 225 NVEQQEKKRCKYCHGSG-----YLACARCSSSGVCLS 256 (299)
Q Consensus 225 nvkqQEkkRCkYC~GTG-----YL~CArCSgSGtl~~ 256 (299)
.++-.+...|.-|+|+| .-.|..|.|+|.+..
T Consensus 32 ~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~ 68 (248)
T 1nlt_A 32 KLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFV 68 (248)
T ss_dssp EEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEE
T ss_pred EEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEE
Confidence 45556678899999998 467999999997643
No 6
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.83 E-value=0.00025 Score=62.59 Aligned_cols=40 Identities=33% Similarity=0.855 Sum_probs=32.6
Q ss_pred hcccccccCcccc---------------ccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCcc
Q 022323 231 KKRCKYCHGSGYL---------------ACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPE 287 (299)
Q Consensus 231 kkRCkYC~GTGYL---------------~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKv 287 (299)
.+.|+.|+|+|+. +|..|.|+|.+.. .+..|+.|.|.|.+
T Consensus 54 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~-----------------~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 54 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIID-----------------PKDRCKSCNGKKVE 108 (248)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCC-----------------TTSBCSSSTTSCEE
T ss_pred CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEec-----------------cCCCCcccCCCceE
Confidence 4799999999974 7999999997621 25689999999964
No 7
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=95.34 E-value=0.0062 Score=43.65 Aligned_cols=27 Identities=33% Similarity=0.823 Sum_probs=21.0
Q ss_pred hHhhcccccccCccc---cccccccCCcee
Q 022323 228 QQEKKRCKYCHGSGY---LACARCSSSGVC 254 (299)
Q Consensus 228 qQEkkRCkYC~GTGY---L~CArCSgSGtl 254 (299)
||-...|+.|+|+|. -+|..|.|+|.+
T Consensus 6 qq~~~~C~~C~GsG~~i~~~C~~C~G~G~v 35 (53)
T 3lcz_A 6 DDLETTCPNCNGSGREEPEPCPKCLGKGVI 35 (53)
T ss_dssp HHHEEECTTTTTSCEETTEECTTTTTSSEE
T ss_pred CceeccCcCCcccccCCCCcCCCCCCcEEE
Confidence 556678999998888 468888888865
No 8
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=94.37 E-value=0.017 Score=41.36 Aligned_cols=28 Identities=32% Similarity=0.667 Sum_probs=22.6
Q ss_pred ccccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCCCccc
Q 022323 242 YLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGDVPEL 288 (299)
Q Consensus 242 YL~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGaGKvl 288 (299)
+-+|..|.|+|.+. ...|++|.|.|.+.
T Consensus 9 ~~~C~~C~GsG~~i-------------------~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 9 ETTCPNCNGSGREE-------------------PEPCPKCLGKGVIL 36 (53)
T ss_dssp EEECTTTTTSCEET-------------------TEECTTTTTSSEEE
T ss_pred eccCcCCcccccCC-------------------CCcCCCCCCcEEEE
Confidence 35799999999861 35799999999763
No 9
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=93.76 E-value=0.027 Score=40.35 Aligned_cols=13 Identities=46% Similarity=0.894 Sum_probs=9.2
Q ss_pred ccCCCCCCCCccc
Q 022323 276 QRCPNCSGDVPEL 288 (299)
Q Consensus 276 erCpNCSGaGKvl 288 (299)
..|++|.|.|++.
T Consensus 24 ~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 24 TPCPACSGKGVIL 36 (53)
T ss_dssp EECTTTTTSSEEE
T ss_pred CCCccCCCCccEE
Confidence 4577788877764
No 10
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=91.95 E-value=0.058 Score=38.57 Aligned_cols=25 Identities=36% Similarity=0.866 Sum_probs=21.6
Q ss_pred hcccccccCcccc---ccccccCCceec
Q 022323 231 KKRCKYCHGSGYL---ACARCSSSGVCL 255 (299)
Q Consensus 231 kkRCkYC~GTGYL---~CArCSgSGtl~ 255 (299)
...|+.|+|+|+. +|..|.|+|.+.
T Consensus 9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~ 36 (53)
T 2bx9_A 9 EVACPKCERAGEIEGTPCPACSGKGVIL 36 (53)
T ss_dssp EEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred cccCCCCcceeccCCCCCccCCCCccEE
Confidence 4589999999975 799999999874
No 11
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=85.60 E-value=0.52 Score=43.54 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=37.7
Q ss_pred CCCccHHHHHHhcCccccccccCcceeeccCCchhHHHHHHHHHhhhh---hhHhhcccccccC
Q 022323 179 LGGTSYEDFIRNMHLPMQLSQVDPIVASFSGGAVGVISALMLIEANNV---EQQEKKRCKYCHG 239 (299)
Q Consensus 179 lGgtsY~dFI~s~hLP~QLsqVDPIVASFsGGAVGVisaLmvvEinnv---kqQEkkRCkYC~G 239 (299)
.+...-+.++..+ |--+.++|++-.+-|...|+.++-+.++-.+.-- +...+..|+-|.+
T Consensus 128 ~~~~~l~~~a~~l-L~~~~~~~~~~~~~fi~aaLq~~~~~~a~~l~~~~~~~~~~~~~CPvCGs 190 (309)
T 2fiy_A 128 AEEGQRKAWAIAL-LSGQFDLLPAALVPFLGAALQVAWSHWLLGLEEGAVVETESRTLCPACGS 190 (309)
T ss_dssp CCHHHHHHHHHHH-HTTCGGGSCGGGHHHHHHHHHHHHHHHHHTCCTTCSCCCTTCSSCTTTCC
T ss_pred CCHHHHHHHHHHH-HcCCcccCchHHHHHHHHHHHHHHHHHHHhCCccccCccccCCCCCCCCC
Confidence 3444456666554 5556677777667777777777766666555321 1256788999976
No 12
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=54.01 E-value=5.8 Score=28.32 Aligned_cols=24 Identities=21% Similarity=0.677 Sum_probs=17.2
Q ss_pred hhcccccccC--------ccccccccccCCceecc
Q 022323 230 EKKRCKYCHG--------SGYLACARCSSSGVCLS 256 (299)
Q Consensus 230 EkkRCkYC~G--------TGYL~CArCSgSGtl~~ 256 (299)
+...|++|.+ +|.+.|..| |.++.
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~~C---GlVl~ 41 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICPEC---GLVVG 41 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTT---CCEEC
T ss_pred ccccCcCCCCCceeEeCCCCeEEeCCC---CCEEe
Confidence 4457999976 578888888 66644
No 13
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=51.06 E-value=2.2 Score=29.40 Aligned_cols=17 Identities=41% Similarity=1.105 Sum_probs=15.5
Q ss_pred HhhcccccccCcccccc
Q 022323 229 QEKKRCKYCHGSGYLAC 245 (299)
Q Consensus 229 QEkkRCkYC~GTGYL~C 245 (299)
-|+..|-||+|.=|..|
T Consensus 12 cehtmcgycqgplymtc 28 (40)
T 1erd_A 12 CEHTMCGYCQGPLYMTC 28 (40)
T ss_dssp TCGGGGGGSCHHHHHHH
T ss_pred ccccccccccCCeeEEE
Confidence 47899999999999988
No 14
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=43.29 E-value=11 Score=28.65 Aligned_cols=26 Identities=38% Similarity=0.853 Sum_probs=17.2
Q ss_pred cCccccccccccCCceecccCCccCCCCCCCCCCCCCcccCCCCCCC
Q 022323 238 HGSGYLACARCSSSGVCLSVDPISTSNASNGPLRVPTTQRCPNCSGD 284 (299)
Q Consensus 238 ~GTGYL~CArCSgSGtl~~idpvS~~~g~~~pl~cPgterCpNCSGa 284 (299)
||+...+|.+|.- ++ + .+.||||...
T Consensus 7 ~~~~~~AC~~C~~---~~--------~----------~~~CPnC~s~ 32 (69)
T 1ryq_A 7 HGSSEKACRHCHY---IT--------S----------EDRCPVCGSR 32 (69)
T ss_dssp C---CEEETTTCB---EE--------S----------SSSCTTTCCC
T ss_pred cCchhhhHHhCCc---cc--------c----------CCcCCCccCC
Confidence 6788899999987 32 1 5689999754
No 15
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=38.92 E-value=11 Score=34.74 Aligned_cols=23 Identities=39% Similarity=0.821 Sum_probs=18.6
Q ss_pred hcccccccC----------ccccccccccCCceecc
Q 022323 231 KKRCKYCHG----------SGYLACARCSSSGVCLS 256 (299)
Q Consensus 231 kkRCkYC~G----------TGYL~CArCSgSGtl~~ 256 (299)
+..|++|.+ +|.+.|..| |.++.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~C---GlVl~ 53 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALC---GLVLS 53 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTT---CBEEE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCC---CCCcc
Confidence 458999996 699999999 77754
No 16
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=38.88 E-value=8.8 Score=24.34 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhccccc
Q 022323 153 LTSLSFISGIILFGGLIA 170 (299)
Q Consensus 153 ~~~~~~i~~ii~FGGLiA 170 (299)
-.||+.++-.|.||||+.
T Consensus 8 FlyFa~l~paIaFGgLl~ 25 (26)
T 1btq_A 8 FIYFAALSPAITFGXXXX 25 (26)
T ss_pred HHHHHHHcchhccccccC
Confidence 456788888999999863
No 17
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=36.38 E-value=11 Score=25.39 Aligned_cols=16 Identities=38% Similarity=1.117 Sum_probs=9.1
Q ss_pred ccccccC--------ccccccccc
Q 022323 233 RCKYCHG--------SGYLACARC 248 (299)
Q Consensus 233 RCkYC~G--------TGYL~CArC 248 (299)
.|+.|++ +|.|.|..|
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~C 30 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKC 30 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSS
T ss_pred eCcCCCCcceEEcCCCCeEECccc
Confidence 4666655 355555555
No 18
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=35.95 E-value=18 Score=27.60 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=24.5
Q ss_pred chhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 022323 72 PETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQ 110 (299)
Q Consensus 72 petv~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQ 110 (299)
=.||+||...+..|+.+. -=|-+++||.+|-.
T Consensus 25 I~Tv~Dfl~~d~~eL~~~-------~~ls~~~v~~l~r~ 56 (83)
T 2kz3_A 25 IKTVVDLVSADLEEVAQK-------CGLSYKALVALRRV 56 (83)
T ss_dssp CCCHHHHTTSCHHHHHHH-------HTCCHHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHHH-------hCCCHHHHHHHHHH
Confidence 369999999999999873 34557888877643
No 19
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=34.78 E-value=13 Score=28.63 Aligned_cols=25 Identities=28% Similarity=0.716 Sum_probs=19.9
Q ss_pred hhHhhcccccccC-------ccccccccccCC
Q 022323 227 EQQEKKRCKYCHG-------SGYLACARCSSS 251 (299)
Q Consensus 227 kqQEkkRCkYC~G-------TGYL~CArCSgS 251 (299)
.|..+..|+.|.+ +|.+.|..|...
T Consensus 23 ~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 23 EMNEDHACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHSCEECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred hccccCcCCCCCCcceeccCCCeEECCCCCCE
Confidence 4556778999977 788999999764
No 20
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=33.23 E-value=14 Score=27.47 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=12.8
Q ss_pred hHhhcccccccCc-------cccccccc
Q 022323 228 QQEKKRCKYCHGS-------GYLACARC 248 (299)
Q Consensus 228 qQEkkRCkYC~GT-------GYL~CArC 248 (299)
..+.-.|+.|+|+ |.|.|..|
T Consensus 5 LLeiL~CP~ck~~L~~~~~~~~LiC~~c 32 (69)
T 2pk7_A 5 LLDILACPICKGPLKLSADKTELISKGA 32 (69)
T ss_dssp GGGTCCCTTTCCCCEECTTSSEEEETTT
T ss_pred HHhheeCCCCCCcCeEeCCCCEEEcCCC
Confidence 3455677777763 55555555
No 21
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=32.89 E-value=13 Score=27.58 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=11.6
Q ss_pred hhcccccccCc-------cccccccc
Q 022323 230 EKKRCKYCHGS-------GYLACARC 248 (299)
Q Consensus 230 EkkRCkYC~GT-------GYL~CArC 248 (299)
+.-+|+.|+|+ |.|.|..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2hf1_A 7 EILVCPLCKGPLVFDKSKDELICKGD 32 (68)
T ss_dssp EECBCTTTCCBCEEETTTTEEEETTT
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCC
Confidence 44567777763 56666555
No 22
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=32.79 E-value=17 Score=32.44 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCccHHH
Q 022323 142 YVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYED 186 (299)
Q Consensus 142 ~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~lElkLGlGgtsY~d 186 (299)
.||++.++.+|...-.++.- -+-.|||+..|
T Consensus 181 ~Ls~~~~~~L~~~i~~vL~~--------------ai~~gg~t~~d 211 (266)
T 1ee8_A 181 SLTEEEARRLYRALREVLAE--------------AVELGGSTLSD 211 (266)
T ss_dssp GCCHHHHHHHHHHHHHHHHH--------------HHHTTCCCCSS
T ss_pred cCCHHHHHHHHHHHHHHHHH--------------HHHcCCccccc
Confidence 46888888887766655443 45567777655
No 23
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.56 E-value=14 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=15.7
Q ss_pred hhHhhcccccccC-------cccccccccc
Q 022323 227 EQQEKKRCKYCHG-------SGYLACARCS 249 (299)
Q Consensus 227 kqQEkkRCkYC~G-------TGYL~CArCS 249 (299)
+..+.-.|+.|+| .|.|.|..|.
T Consensus 6 ~LLeiL~CP~ck~~L~~~~~~g~LvC~~c~ 35 (67)
T 2jny_A 6 QLLEVLACPKDKGPLRYLESEQLLVNERLN 35 (67)
T ss_dssp GGTCCCBCTTTCCBCEEETTTTEEEETTTT
T ss_pred HHHHHhCCCCCCCcCeEeCCCCEEEcCCCC
Confidence 3456668888887 4677777663
No 24
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=32.09 E-value=12 Score=26.68 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=15.8
Q ss_pred hHhhcccccccCc-----cccccc--ccc
Q 022323 228 QQEKKRCKYCHGS-----GYLACA--RCS 249 (299)
Q Consensus 228 qQEkkRCkYC~GT-----GYL~CA--rCS 249 (299)
..+.-+|+.|+|. |.|.|. .|.
T Consensus 7 lL~iL~CP~c~~~L~~~~~~L~C~~~~c~ 35 (56)
T 2kpi_A 7 LLEILACPACHAPLEERDAELICTGQDCG 35 (56)
T ss_dssp CTTSCCCSSSCSCEEEETTEEEECSSSCC
T ss_pred HHhheeCCCCCCcceecCCEEEcCCcCCC
Confidence 3456688888886 777777 663
No 25
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=31.60 E-value=16 Score=32.15 Aligned_cols=47 Identities=32% Similarity=0.668 Sum_probs=28.8
Q ss_pred hHhhcccccccCccccccccccCCceecccCCccCCCCCC---CCCCCC------CcccCCCCCCCCccccc
Q 022323 228 QQEKKRCKYCHGSGYLACARCSSSGVCLSVDPISTSNASN---GPLRVP------TTQRCPNCSGDVPELPL 290 (299)
Q Consensus 228 qQEkkRCkYC~GTGYL~CArCSgSGtl~~idpvS~~~g~~---~pl~cP------gterCpNCSGaGKvlp~ 290 (299)
+..+|.| -|+|.|+. ..+.++|.. +|..|. ....||||.|.=+++|-
T Consensus 70 ~ilkKsC-----LGVlvCs~-----------~C~~p~g~~i~lRPAicdkAR~KQq~k~CpnC~g~L~~~~C 125 (174)
T 1odh_A 70 RILKKSC-----LGVVVCSR-----------DCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPLKLIPC 125 (174)
T ss_dssp TCEEEEE-----CCEEEETT-----------CCCCSSSCCCEECCCSSHHHHHHHHHSBCSSSCCBEEEECC
T ss_pred hhhhhcc-----ceEEEecC-----------CcCCCCCCeeeechHHHHHHHHHhhcCCCCCCCcceeeEec
Confidence 3455555 26777743 233445544 667777 24569999987776664
No 26
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=30.85 E-value=14 Score=27.35 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=11.9
Q ss_pred hhcccccccCc-------cccccccc
Q 022323 230 EKKRCKYCHGS-------GYLACARC 248 (299)
Q Consensus 230 EkkRCkYC~GT-------GYL~CArC 248 (299)
+.-+|+.|+|+ |.|.|..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~c 32 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQA 32 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTT
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCC
Confidence 44567777763 66666655
No 27
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=29.50 E-value=15 Score=32.82 Aligned_cols=32 Identities=16% Similarity=0.343 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCccHHHH
Q 022323 142 YVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDF 187 (299)
Q Consensus 142 ~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~lElkLGlGgtsY~dF 187 (299)
.||++-++.++...-.++.- =+-.||||..||
T Consensus 191 ~Ls~~~~~~L~~~i~~vL~~--------------ai~~gg~t~~~~ 222 (271)
T 2xzf_A 191 QLIESSIHLLHDSIIEILQK--------------AIKLGGSSIRTY 222 (271)
T ss_dssp GCCHHHHHHHHHHHHHHHHH--------------HHHTTCCC----
T ss_pred cCCHHHHHHHHHHHHHHHHH--------------HHHcCCCccccc
Confidence 36788888887766555443 345678887776
No 28
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=26.79 E-value=20 Score=32.53 Aligned_cols=22 Identities=36% Similarity=0.825 Sum_probs=17.1
Q ss_pred hcccccccC----------ccccccccccCCceec
Q 022323 231 KKRCKYCHG----------SGYLACARCSSSGVCL 255 (299)
Q Consensus 231 kkRCkYC~G----------TGYL~CArCSgSGtl~ 255 (299)
...|++|.+ +|.+.|..| |+++
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~C---G~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALC---GLVL 52 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSS---CCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCC---CeEc
Confidence 557999977 488899888 5554
No 29
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.51 E-value=20 Score=26.75 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=14.0
Q ss_pred HhhcccccccC-------cccccccccc
Q 022323 229 QEKKRCKYCHG-------SGYLACARCS 249 (299)
Q Consensus 229 QEkkRCkYC~G-------TGYL~CArCS 249 (299)
.+.-.|+.|+| .|.|.|..|.
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg 33 (70)
T 2js4_A 6 LDILVCPVCKGRLEFQRAQAELVCNADR 33 (70)
T ss_dssp CCCCBCTTTCCBEEEETTTTEEEETTTT
T ss_pred hhheECCCCCCcCEEeCCCCEEEcCCCC
Confidence 34557888887 3677777663
No 30
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=26.50 E-value=18 Score=32.30 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCccHHHHH
Q 022323 142 YVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFI 188 (299)
Q Consensus 142 ~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~lElkLGlGgtsY~dFI 188 (299)
.||++.++.+|...-.++.- -+-.|||+..||.
T Consensus 188 ~Ls~~~~~~L~~~i~~vL~~--------------ai~~gg~t~~d~~ 220 (268)
T 1k82_A 188 SLSLAECELLARVIKAVLLR--------------SIEQGGTTLKDFL 220 (268)
T ss_dssp GCCHHHHHHHHHHHHHHHHH--------------HHHTTCCCCC---
T ss_pred cCCHHHHHHHHHHHHHHHHH--------------HHHcCCccccccc
Confidence 46888888887766555433 4566888887776
No 31
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=26.30 E-value=28 Score=21.98 Aligned_cols=15 Identities=40% Similarity=0.806 Sum_probs=9.4
Q ss_pred HHhhhhhhHH--HHHHH
Q 022323 90 IKHRRNRIFF--LMEEL 104 (299)
Q Consensus 90 I~sRrnKIFl--lmEEV 104 (299)
|+..|.+||| |||||
T Consensus 4 ~Q~~rRr~wL~~ll~~v 20 (24)
T 3h3g_B 4 IQDLRRRFFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 3445666776 67776
No 32
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=26.19 E-value=17 Score=28.50 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=11.1
Q ss_pred eCchhHH-HHHh------hcHHHHHH
Q 022323 70 EGPETLQ-DFVQ------MQLKEIED 88 (299)
Q Consensus 70 egpetv~-Dfa~------mql~EI~d 88 (299)
+..|+|| ||++ |||++|++
T Consensus 29 dtsE~VQrDFVkLSQsLQvqLE~IRq 54 (79)
T 1tu3_F 29 DVSEQVQRDFVKLSQTLQVQLERIRQ 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3457775 8876 44555543
No 33
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=26.07 E-value=18 Score=35.75 Aligned_cols=10 Identities=40% Similarity=1.165 Sum_probs=0.0
Q ss_pred cccccCcccc
Q 022323 234 CKYCHGSGYL 243 (299)
Q Consensus 234 CkYC~GTGYL 243 (299)
|++|+|+|++
T Consensus 411 Cp~C~G~G~v 420 (517)
T 2bx2_L 411 CPRCSGTGTV 420 (517)
T ss_dssp CSSSSSSSCC
T ss_pred CCCcCCceeE
No 34
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=25.54 E-value=18 Score=32.43 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhcCCCccHHHHH
Q 022323 142 YVTPKTLKQLYLTSLSFISGIILFGGLIAPTLELKLGLGGTSYEDFI 188 (299)
Q Consensus 142 ~lt~~tlk~yy~~~~~~i~~ii~FGGLiAP~lElkLGlGgtsY~dFI 188 (299)
.||++.++.+|...-.++.- =+-.|||+..||.
T Consensus 193 ~Ls~~~~~~L~~~i~~vL~~--------------ai~~gg~t~~~~~ 225 (273)
T 3u6p_A 193 SLSSKEIERLHEEMVATIGE--------------AVMKGGSTPRTYV 225 (273)
T ss_dssp GCCHHHHHHHHHHHHHHHHH--------------HHC----------
T ss_pred cCCHHHHHHHHHHHHHHHHH--------------HHHhCCccccccc
Confidence 36788888887766555443 3445788776665
No 35
>2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C*
Probab=25.35 E-value=9.5 Score=30.90 Aligned_cols=23 Identities=22% Similarity=0.645 Sum_probs=16.9
Q ss_pred hhcccccccCcc--c----------cccccccCCc
Q 022323 230 EKKRCKYCHGSG--Y----------LACARCSSSG 252 (299)
Q Consensus 230 EkkRCkYC~GTG--Y----------L~CArCSgSG 252 (299)
....|..||... | ..|..|...-
T Consensus 39 ~~~~C~~CH~~~~~~~~~~~s~H~~~~C~~CH~p~ 73 (159)
T 2j7a_C 39 QRPFCTSCHIMNPVGVTHKLSGHANISCNDCHAPH 73 (159)
T ss_dssp SHHHHTTSGGGHHHHHHHHHSTTTTSCTHHHHSCS
T ss_pred CCchHHhcCCChhHHHHhccCCCCCCcCccccCCc
Confidence 346899999842 1 5799999863
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.89 E-value=73 Score=30.26 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=30.8
Q ss_pred CchhHHHHHhhcHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 022323 71 GPETLQDFVQMQLKEIEDNIKHRRNRIFFLMEELRRLR 108 (299)
Q Consensus 71 gpetv~Dfa~mql~EI~dNI~sRrnKIFllmEEVRRLR 108 (299)
--+...|+.++|-++|++.++.-+.++.-+=||+++|+
T Consensus 53 ~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 53 KLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34556688999999999999888888888888888765
No 37
>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis}
Probab=23.71 E-value=18 Score=29.49 Aligned_cols=18 Identities=33% Similarity=0.737 Sum_probs=13.5
Q ss_pred ccccccccccCCceeccc
Q 022323 240 SGYLACARCSSSGVCLSV 257 (299)
Q Consensus 240 TGYL~CArCSgSGtl~~i 257 (299)
.|.||||-|.|-=+-+..
T Consensus 34 ~G~LPCADC~GI~ttLtL 51 (126)
T 3lhn_A 34 EGVLPCASCEGIQTTLTL 51 (126)
T ss_dssp EEEECCTTSSEEEEEEEE
T ss_pred EEEeECCCCCCeEEEEEE
Confidence 699999999976544443
No 38
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=23.55 E-value=16 Score=27.77 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=19.9
Q ss_pred hhhhhhHhhcccccccCccccccccccC
Q 022323 223 ANNVEQQEKKRCKYCHGSGYLACARCSS 250 (299)
Q Consensus 223 innvkqQEkkRCkYC~GTGYL~CArCSg 250 (299)
+|.-+.+-+.+|.+|.-+++-+|-+|+-
T Consensus 9 ~NIp~~R~~l~C~iC~~~~~GAciqC~~ 36 (87)
T 2lq6_A 9 MNIPPARWKLTCYLCKQKGVGASIQCHK 36 (87)
T ss_dssp CCCCCCCCCCCBTTTTBCCSSCEEECSC
T ss_pred cCCChHHhcCCCcCCCCCCCcEeEecCC
Confidence 3444555688999998776667777764
No 39
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.16 E-value=41 Score=24.95 Aligned_cols=9 Identities=33% Similarity=0.918 Sum_probs=6.5
Q ss_pred cccCCCCCC
Q 022323 275 TQRCPNCSG 283 (299)
Q Consensus 275 terCpNCSG 283 (299)
..||++|-.
T Consensus 38 ~iRC~~CG~ 46 (63)
T 3h0g_L 38 VIRCRECGH 46 (63)
T ss_dssp CCCCSSSCC
T ss_pred ceECCCCCc
Confidence 678888853
No 40
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.64 E-value=1.1e+02 Score=23.02 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=26.5
Q ss_pred HHhhcHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccc
Q 022323 78 FVQMQLKEIEDNIKHRRNRIFFLMEELRRLRVQQRIKGLK 117 (299)
Q Consensus 78 fa~mql~EI~dNI~sRrnKIFllmEEVRRLRiQqrik~~~ 117 (299)
|..-.++|+.+=|..-...|=.|-+++|.|+ +|+++.+
T Consensus 25 fqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~--~rl~~~~ 62 (78)
T 3efg_A 25 FQEQALTELSEALADARLTGARNAELIRHLL--EDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 4445578888888888888888888999886 4555533
No 41
>1ft5_A Cytochrome C554; heme-stacking, electron transport; HET: HEM; 1.60A {Nitrosomonas europaea} SCOP: a.138.1.3 PDB: 1bvb_A* 1ft6_A*
Probab=21.17 E-value=20 Score=30.97 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=12.3
Q ss_pred HhhcccccccCcccc
Q 022323 229 QEKKRCKYCHGSGYL 243 (299)
Q Consensus 229 QEkkRCkYC~GTGYL 243 (299)
+....|..||.+||.
T Consensus 55 ~~~~~C~~CH~~~~~ 69 (211)
T 1ft5_A 55 TQDKDCVGCHVDGFG 69 (211)
T ss_dssp TTCTTTGGGSBSSTT
T ss_pred cccccccccCCCccC
Confidence 467899999999764
No 42
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=20.79 E-value=40 Score=35.86 Aligned_cols=30 Identities=47% Similarity=0.770 Sum_probs=23.2
Q ss_pred hhcccccccC--------------ccccccccccCCceecccCC
Q 022323 230 EKKRCKYCHG--------------SGYLACARCSSSGVCLSVDP 259 (299)
Q Consensus 230 EkkRCkYC~G--------------TGYL~CArCSgSGtl~~idp 259 (299)
++..|+.|.. +-+-+|.+|.|.|.+..+|+
T Consensus 274 ~~~~c~~~g~~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~~~d~ 317 (993)
T 2ygr_A 274 EKLACPNGHALAVDDLEPRSFSFNSPYGACPDCSGLGIRKEVDP 317 (993)
T ss_dssp SSCBCTTCCCCSCSCCCGGGGCTTSTTTBCTTTTTSCEEEEECT
T ss_pred ccccCCCCCCcccCCCChhhcCcCCCCCCCCCCcCccceeecCH
Confidence 5678999972 23568999999999876654
No 43
>3ctk_A RIP;, rRNA N-glycosidase; alpha-beta protein, hydrolase; 1.80A {Bougainvillea spectabilis} SCOP: d.165.1.1
Probab=20.33 E-value=26 Score=31.10 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=16.1
Q ss_pred chhhhhhcCCCccHHHHHHhcC
Q 022323 171 PTLELKLGLGGTSYEDFIRNMH 192 (299)
Q Consensus 171 P~lElkLGlGgtsY~dFI~s~h 192 (299)
|++.+.++ |+++|.+||.++.
T Consensus 2 ~tv~f~~~-~a~~Y~~Fi~~LR 22 (248)
T 3ctk_A 2 NTVSFNLG-EAYEYPTFIQDLR 22 (248)
T ss_dssp CEEEEETT-CGGGHHHHHHHHH
T ss_pred CeEEEecC-CcchHHHHHHHHH
Confidence 55666675 7789999998874
Done!