BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022324
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 159 FDFDESKIV-GLIGTRICIWRRNGL--RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTA 215
+D+ KIV GL I IW +N L + + G+ LC++Y + + G D T
Sbjct: 139 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV---LCLQYDERVIITGSSDSTV 195
Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
RV+D+ + + + HC V L +
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRFNN 223
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Query: 111 HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIVG 168
H V R G+++T D+ + +W + + + + A++ DFD+ IV
Sbjct: 212 HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 271
Query: 169 LIGTR-ICIWRRNG---LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224
G R I +W + +R++ + G C++Y D V G D T R++D+
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGI----ACLQYRDRLVVSGSSDNTIRLWDIECGA 327
Query: 225 CSQIIRMH 232
C +++ H
Sbjct: 328 CLRVLEGH 335
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 165 KIVGLIGTRICIWR--RNGLRSVFPSREGTFMKGL-CMRYFDPEAVVGCEDGTARVFDMY 221
KI+ I T WR R+ L+ + E + KG+ C++Y D + V G D T +++D
Sbjct: 104 KIIQDIETIESNWRCGRHSLQRIHCRSETS--KGVYCLQYDDQKIVSGLRDNTIKIWDKN 161
Query: 222 SRKCSQIIRMHCAPVTSLSLSE 243
+ +C +I+ H V L E
Sbjct: 162 TLECKRILTGHTGSVLCLQYDE 183
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
Query: 110 AHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL 169
H+ GV +M+ +I++G D+ +++W+ E +C+ ++L S V + + L
Sbjct: 157 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECI--HTLYGHTSTV-------RCMHL 207
Query: 170 IGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEAVVGCEDGTARVFDMY 221
R+ R+ V+ G + L C++Y V G D +V+D
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 267
Query: 222 SRKCSQIIRMHCAPVTSLSL 241
+ C ++ H V SL
Sbjct: 268 TETCLHTLQGHTNRVYSLQF 287
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 22/132 (16%)
Query: 125 ILTGVGDKVMRLWSLEGYKCVEE--------YSLP-NAASLVDFDFDESKIVGLIGTRIC 175
+++G D ++++W E C+ YSL + +V D S V + T C
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC 311
Query: 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR---MH 232
I G +S+ M D V G D T +++D+ + +C Q ++ H
Sbjct: 312 IHTLTGHQSLTSG----------MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH 361
Query: 233 CAPVTSLSLSED 244
+ VT L +++
Sbjct: 362 QSAVTCLQFNKN 373
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 24/158 (15%)
Query: 102 RIDIDQW--KAHSVGVDQCRMKRGLILTGVG--DKVMRLWSLEGYKCVEEYSL-PNAASL 156
R+D+ QW + H +GV + L + D +RLW LE K ++ P A
Sbjct: 69 RLDL-QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127
Query: 157 VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR-------YFDPEA--- 206
+ F D + GT + G ++F G L R + P+
Sbjct: 128 LAFSPDSQYLA--TGTHV------GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179
Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
G DG +FD+ + K + H P+ SL+ S D
Sbjct: 180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSG-SSM 82
I SL +I IF+ L F D++ V ++WN II + L F + G +S+
Sbjct: 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSL 74
Query: 83 RLHLEELAMK-----HHRFALEEGRIDIDQW------------KAHSVGVDQC-RMKRGL 124
L L + K R + E + W + H V C + +
Sbjct: 75 NLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNY 134
Query: 125 ILTGVGDKVMRLW 137
++TG DK +R++
Sbjct: 135 VITGADDKXIRVY 147
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 20/185 (10%)
Query: 71 LHGFSNTSGSSMRLHLEELAMKHHRFAL-----EEGRIDIDQWKAHSVGVDQCRMKRGLI 125
LH + SS+ H EE H + L EE + + H V ++
Sbjct: 229 LHVWKLPKESSVPDHGEE-----HDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIV 283
Query: 126 LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVD---FDFDESK-IVGLIGTRICIWRRNG 181
++G D + +W + KC+ Y L + +D + + I T I IW
Sbjct: 284 VSGSYDNTLIVWDVAQXKCL--YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Query: 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM--YSRKCSQIIRMHCAPVTSL 239
+ + T + GL +R D V DG+ R +D YSRK S + + +T+
Sbjct: 342 GELXYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAITTF 399
Query: 240 SLSED 244
+S++
Sbjct: 400 YVSDN 404
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 54/133 (40%), Gaps = 19/133 (14%)
Query: 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSG-SSM 82
I SL +I IF+ L F D++ V ++WN II + L F + G +S+
Sbjct: 15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSL 74
Query: 83 RLHLEELAMK-----HHRFALEEGRIDIDQW------------KAHSVGVDQC-RMKRGL 124
L L + K R + E + W + H V C + +
Sbjct: 75 NLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNY 134
Query: 125 ILTGVGDKVMRLW 137
++TG DK++R++
Sbjct: 135 VITGADDKMIRVY 147
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 20/185 (10%)
Query: 71 LHGFSNTSGSSMRLHLEELAMKHHRFAL-----EEGRIDIDQWKAHSVGVDQCRMKRGLI 125
LH + SS+ H EE H + L EE + + H V ++
Sbjct: 229 LHVWKLPKESSVPDHGEE-----HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 283
Query: 126 LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVD---FDFDESK-IVGLIGTRICIWRRNG 181
++G D + +W + KC+ Y L + +D + + I + T I IW
Sbjct: 284 VSGSYDNTLIVWDVAQMKCL--YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Query: 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM--YSRKCSQIIRMHCAPVTSL 239
++ + T + GL +R D V DG+ R +D YSRK S + + +T+
Sbjct: 342 GELMYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAITTF 399
Query: 240 SLSED 244
+S++
Sbjct: 400 YVSDN 404
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 29/125 (23%)
Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASLVDFDFDESKIVGLIGT 172
L+ + D ++LW +G++C+ +PN +V D++ + + T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 173 RICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQ 227
C+ R +R V P+++GT + C D T RV+ + +++C
Sbjct: 224 GYCVKTFTGHREWVRMVRPNQDGTL-------------IASCSNDQTVRVWVVATKECKA 270
Query: 228 IIRMH 232
+R H
Sbjct: 271 ELREH 275
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 173
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 164
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 165 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH 236
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 177
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 187
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 220
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 121 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 178
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 179 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 230
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 231 NTLKLWDYSKGKCLKTYTGH 250
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 173
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 164
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 165 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH 236
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 114 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 159
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 103 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 160
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 161 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 212
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 213 NTLKLWDYSKGKCLKTYTGH 232
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 122 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 169
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 170 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 202
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVE------EYSL-----PNAASL 156
H +G+ L+++ DK +++W + KC++ Y P + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 173
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 164
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 165 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 217 NTLKLWDYSKGKCLKTYTGH 236
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 156
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 166
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 167 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 199
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 100 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 157
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 158 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 209
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 210 NTLKLWDYSKGKCLKTYTGH 229
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 170
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 161
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 162 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH 233
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 176
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 209
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 167
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 168 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH 239
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 161
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 171
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 172 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 204
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 105 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 162
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 163 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 214
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 215 NTLKLWDYSKGKCLKTYTGH 234
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 176
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 209
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 167
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 168 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH 239
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 165
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 175
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 208
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 109 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 166
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 167 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 218
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 219 NTLKLWDYSKGKCLKTYTGH 238
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVE------EYSL-----PNAASL 156
H +G+ L+++ DK +++W + KC++ Y P + +
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 176
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 209
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 167
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 168 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 219
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 220 NTLKLWDYSKGKCLKTYTGH 239
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 170
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 203
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 161
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEA---VVGCED 212
S IV +GL ++ + G +K L F P + D
Sbjct: 162 SLIVSS--------SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 213
Query: 213 GTARVFDMYSRKCSQIIRMH 232
T +++D KC + H
Sbjct: 214 NTLKLWDYSKGKCLKTYTGH 233
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 183
Query: 164 SKIVGLIGTRIC-IW 177
S IV +C IW
Sbjct: 184 SLIVSSSYDGLCRIW 198
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 192
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 225
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
F+P++ V G D + R++D+ + KC + + H PV+++ + D
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 184
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDE 163
K HS V C + LI++G D+ +R+W ++ KC++ +LP + S V F+ D
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK--TLPAHSDPVSAVHFNRDG 185
Query: 164 SKIVGLIGTRIC-IW 177
S IV +C IW
Sbjct: 186 SLIVSSSYDGLCRIW 200
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T C+ + + +V +R+G+ + V D
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 194
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 227
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T +C+ + + +V +R+G+ + V D
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 173
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYS-----------LPNAASL 156
H +G+ L+++ DK +++W + KC++ P + +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 157 VDFDFDESKIVGLIGTRICI----WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
V FDES + + T +C+ + + +V +R+G+ + V D
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLI------------VSSSYD 173
Query: 213 GTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED 244
G R++D S +C +I PV+ + S +
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPN 206
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 131 DKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188
D +RLW+L+ +C ++ L V F D +IV G + +W G S
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLS 147
Query: 189 REGTFMKGLCMRYFD----PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244
R C+R+ P V G D +V+D+ + + ++ H VTS+++S D
Sbjct: 148 RGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.141 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,792,112
Number of Sequences: 62578
Number of extensions: 290341
Number of successful extensions: 805
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 91
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)