Query 022324
Match_columns 299
No_of_seqs 438 out of 2705
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 02:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022324.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022324hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.8E-40 3.9E-45 259.9 8.3 282 10-297 125-472 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 8.3E-38 1.8E-42 247.6 6.9 257 10-297 185-451 (459)
3 KOG0286 G-protein beta subunit 100.0 8.4E-35 1.8E-39 220.8 14.9 254 37-297 50-336 (343)
4 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-35 6.7E-40 233.1 11.2 190 105-297 210-409 (459)
5 KOG0295 WD40 repeat-containing 100.0 4.4E-34 9.6E-39 222.7 16.1 247 20-296 128-396 (406)
6 KOG0271 Notchless-like WD40 re 100.0 6.5E-35 1.4E-39 228.8 10.2 255 35-296 108-429 (480)
7 KOG0263 Transcription initiati 100.0 8.6E-34 1.9E-38 240.7 16.4 241 41-296 377-639 (707)
8 KOG0315 G-protein beta subunit 100.0 3.3E-33 7.2E-38 207.7 17.5 256 10-296 8-278 (311)
9 KOG0281 Beta-TrCP (transducin 100.0 7.4E-33 1.6E-37 215.1 11.9 271 21-298 72-420 (499)
10 KOG0279 G protein beta subunit 100.0 5.4E-31 1.2E-35 198.9 20.6 234 37-295 10-252 (315)
11 KOG0279 G protein beta subunit 100.0 1.5E-31 3.2E-36 201.9 15.1 247 18-295 34-302 (315)
12 KOG0273 Beta-transducin family 100.0 2.2E-31 4.8E-36 214.0 16.3 266 30-298 166-474 (524)
13 KOG0263 Transcription initiati 100.0 1.5E-31 3.3E-36 227.1 15.3 229 37-296 446-705 (707)
14 KOG0284 Polyadenylation factor 100.0 7.1E-32 1.5E-36 213.3 6.1 255 11-296 107-370 (464)
15 KOG0286 G-protein beta subunit 100.0 1.2E-28 2.5E-33 187.5 21.5 188 105-297 48-250 (343)
16 KOG0266 WD40 repeat-containing 100.0 8.4E-30 1.8E-34 219.6 17.3 253 15-296 174-442 (456)
17 KOG0292 Vesicle coat complex C 100.0 1.5E-29 3.3E-34 217.4 17.0 247 19-296 28-312 (1202)
18 KOG0285 Pleiotropic regulator 100.0 7.9E-29 1.7E-33 193.3 17.5 189 105-296 144-339 (460)
19 KOG0643 Translation initiation 100.0 1.1E-28 2.4E-33 185.4 17.5 227 37-295 5-250 (327)
20 KOG0265 U5 snRNP-specific prot 100.0 4.1E-29 8.9E-34 190.6 14.9 235 34-297 39-329 (338)
21 KOG0291 WD40-repeat-containing 100.0 2.4E-28 5.3E-33 206.7 16.6 242 25-296 333-602 (893)
22 KOG0281 Beta-TrCP (transducin 100.0 1.1E-29 2.4E-34 197.5 6.5 245 13-295 208-466 (499)
23 KOG0282 mRNA splicing factor [ 100.0 9.7E-29 2.1E-33 199.4 11.9 236 34-299 206-498 (503)
24 KOG0315 G-protein beta subunit 100.0 1.6E-28 3.4E-33 182.9 11.7 232 22-285 61-309 (311)
25 KOG0285 Pleiotropic regulator 100.0 6.9E-29 1.5E-33 193.6 10.2 226 38-296 147-379 (460)
26 KOG0283 WD40 repeat-containing 100.0 1.6E-28 3.6E-33 210.3 13.3 262 35-296 259-566 (712)
27 KOG0295 WD40 repeat-containing 100.0 1.2E-28 2.7E-33 192.4 10.7 230 37-297 103-355 (406)
28 KOG0278 Serine/threonine kinas 100.0 2.6E-27 5.6E-32 176.7 15.6 224 12-265 71-300 (334)
29 KOG0291 WD40-repeat-containing 100.0 1.6E-26 3.5E-31 195.8 22.0 187 109-298 347-542 (893)
30 KOG1407 WD40 repeat protein [F 100.0 1.3E-27 2.8E-32 179.2 13.3 233 36-296 14-251 (313)
31 KOG0318 WD40 repeat stress pro 100.0 3.6E-27 7.8E-32 192.3 17.0 261 10-297 158-551 (603)
32 KOG0284 Polyadenylation factor 100.0 1.3E-28 2.8E-33 194.9 8.1 214 80-297 93-328 (464)
33 KOG0266 WD40 repeat-containing 100.0 8.5E-27 1.9E-31 201.0 19.2 229 42-297 159-400 (456)
34 KOG0276 Vesicle coat complex C 100.0 3.4E-27 7.5E-32 196.1 15.2 246 20-296 33-289 (794)
35 KOG0274 Cdc4 and related F-box 100.0 2E-26 4.4E-31 198.7 20.5 271 16-297 100-432 (537)
36 KOG0316 Conserved WD40 repeat- 99.9 1.4E-27 2.9E-32 176.7 11.2 230 39-298 14-249 (307)
37 KOG0273 Beta-transducin family 99.9 5.2E-27 1.1E-31 189.0 14.6 245 18-295 253-512 (524)
38 KOG0265 U5 snRNP-specific prot 99.9 3.3E-26 7.3E-31 174.7 18.1 188 105-296 40-236 (338)
39 KOG0316 Conserved WD40 repeat- 99.9 6.5E-26 1.4E-30 167.8 18.3 188 105-298 10-205 (307)
40 KOG0645 WD40 repeat protein [G 99.9 4.5E-25 9.8E-30 166.4 22.8 189 105-296 7-215 (312)
41 KOG0300 WD40 repeat-containing 99.9 5.4E-27 1.2E-31 180.7 12.7 270 17-296 165-466 (481)
42 KOG0296 Angio-associated migra 99.9 1E-26 2.2E-31 181.8 13.7 255 11-296 75-388 (399)
43 KOG0319 WD40-repeat-containing 99.9 2.6E-27 5.5E-32 200.1 10.5 248 22-297 346-610 (775)
44 KOG0277 Peroxisomal targeting 99.9 2.6E-26 5.7E-31 171.6 12.2 207 78-298 81-301 (311)
45 KOG0288 WD40 repeat protein Ti 99.9 1.1E-26 2.3E-31 184.4 10.6 257 10-296 185-451 (459)
46 cd00200 WD40 WD40 domain, foun 99.9 1.4E-25 3E-30 182.4 17.7 253 14-297 23-282 (289)
47 PLN00181 protein SPA1-RELATED; 99.9 2.4E-25 5.3E-30 205.1 21.3 236 38-297 479-729 (793)
48 KOG0306 WD40-repeat-containing 99.9 5.3E-26 1.1E-30 192.6 15.1 254 34-296 365-654 (888)
49 KOG0282 mRNA splicing factor [ 99.9 2E-26 4.3E-31 186.2 11.2 191 105-296 207-405 (503)
50 KOG0293 WD40 repeat-containing 99.9 2.7E-26 5.8E-31 182.3 11.4 190 105-296 262-503 (519)
51 PTZ00421 coronin; Provisional 99.9 4.8E-25 1E-29 189.8 19.3 228 38-287 71-314 (493)
52 cd00200 WD40 WD40 domain, foun 99.9 6.5E-25 1.4E-29 178.4 18.7 229 36-295 3-238 (289)
53 KOG0313 Microtubule binding pr 99.9 6.7E-26 1.5E-30 178.1 11.4 256 12-296 115-408 (423)
54 KOG0319 WD40-repeat-containing 99.9 7.2E-25 1.5E-29 185.4 17.7 192 105-299 358-570 (775)
55 PLN00181 protein SPA1-RELATED; 99.9 5.4E-25 1.2E-29 202.9 18.0 253 13-298 496-785 (793)
56 KOG0313 Microtubule binding pr 99.9 1.1E-25 2.4E-30 176.9 11.4 240 14-262 161-418 (423)
57 PTZ00420 coronin; Provisional 99.9 8.7E-25 1.9E-29 189.3 17.9 250 18-288 50-318 (568)
58 PTZ00421 coronin; Provisional 99.9 3.2E-23 6.9E-28 178.6 25.6 188 106-295 69-278 (493)
59 KOG0973 Histone transcription 99.9 7.5E-25 1.6E-29 192.6 14.6 270 10-298 23-347 (942)
60 KOG0278 Serine/threonine kinas 99.9 4.7E-25 1E-29 164.7 11.3 237 29-298 46-289 (334)
61 KOG0645 WD40 repeat protein [G 99.9 5E-24 1.1E-28 160.8 16.1 226 34-295 6-250 (312)
62 KOG0318 WD40 repeat stress pro 99.9 1.4E-24 3E-29 177.3 13.7 266 26-298 43-342 (603)
63 KOG0276 Vesicle coat complex C 99.9 1.2E-24 2.7E-29 181.0 13.4 229 39-298 10-249 (794)
64 KOG0640 mRNA cleavage stimulat 99.9 1.5E-24 3.1E-29 166.8 12.3 233 25-273 94-346 (430)
65 PTZ00420 coronin; Provisional 99.9 1.5E-22 3.2E-27 175.5 26.2 193 104-296 66-283 (568)
66 KOG0274 Cdc4 and related F-box 99.9 1.1E-24 2.4E-29 188.0 12.2 235 17-285 223-463 (537)
67 KOG1036 Mitotic spindle checkp 99.9 4.7E-24 1E-28 163.6 14.2 225 40-297 11-295 (323)
68 KOG0310 Conserved WD40 repeat- 99.9 1E-23 2.3E-28 170.7 16.4 190 105-298 103-301 (487)
69 KOG0267 Microtubule severing p 99.9 2.8E-25 6.1E-30 187.5 6.6 189 105-296 63-258 (825)
70 KOG0289 mRNA splicing factor [ 99.9 3.4E-23 7.3E-28 165.6 17.7 190 105-295 254-451 (506)
71 KOG0294 WD40 repeat-containing 99.9 8.2E-24 1.8E-28 162.8 13.6 220 32-284 33-305 (362)
72 KOG1446 Histone H3 (Lys4) meth 99.9 5.1E-24 1.1E-28 164.1 12.4 190 105-296 93-295 (311)
73 KOG0647 mRNA export protein (c 99.9 3E-24 6.5E-29 164.3 11.0 244 20-296 48-313 (347)
74 KOG0268 Sof1-like rRNA process 99.9 1.2E-23 2.5E-28 164.8 13.2 244 24-296 42-335 (433)
75 KOG0640 mRNA cleavage stimulat 99.9 3.4E-23 7.4E-28 159.3 15.4 194 105-298 105-327 (430)
76 KOG0299 U3 snoRNP-associated p 99.9 7.1E-24 1.5E-28 170.5 11.7 222 40-294 200-443 (479)
77 KOG0289 mRNA splicing factor [ 99.9 1.1E-22 2.4E-27 162.7 17.1 256 12-298 231-498 (506)
78 KOG0296 Angio-associated migra 99.9 4.6E-22 1E-26 155.9 20.2 191 103-295 55-252 (399)
79 KOG0305 Anaphase promoting com 99.9 9.9E-24 2.1E-28 176.4 11.4 223 42-296 217-451 (484)
80 KOG0643 Translation initiation 99.9 6.6E-22 1.4E-26 149.2 19.9 187 108-296 6-210 (327)
81 KOG1332 Vesicle coat complex C 99.9 5.8E-23 1.3E-27 153.0 13.6 228 40-295 9-275 (299)
82 KOG0772 Uncharacterized conser 99.9 1.1E-23 2.3E-28 171.9 10.5 254 37-296 162-477 (641)
83 KOG0275 Conserved WD40 repeat- 99.9 1.1E-23 2.4E-28 163.0 10.0 177 110-287 211-403 (508)
84 KOG0308 Conserved WD40 repeat- 99.9 2E-23 4.2E-28 174.6 11.6 242 15-285 40-306 (735)
85 KOG0641 WD40 repeat protein [G 99.9 5.7E-22 1.2E-26 146.4 16.9 239 38-296 28-293 (350)
86 KOG0275 Conserved WD40 repeat- 99.9 5.2E-23 1.1E-27 159.3 11.7 256 11-296 224-499 (508)
87 KOG2096 WD40 repeat protein [G 99.9 1.9E-22 4E-27 155.8 14.0 253 35-296 79-393 (420)
88 KOG0277 Peroxisomal targeting 99.9 4E-22 8.7E-27 149.3 14.2 182 111-295 59-254 (311)
89 KOG1407 WD40 repeat protein [F 99.9 1.6E-21 3.5E-26 146.7 16.7 255 10-296 30-292 (313)
90 KOG0641 WD40 repeat protein [G 99.9 3E-21 6.5E-26 142.6 17.4 230 40-295 87-338 (350)
91 KOG0264 Nucleosome remodeling 99.9 1.3E-21 2.7E-26 157.5 15.1 237 38-294 120-391 (422)
92 KOG0292 Vesicle coat complex C 99.9 4.6E-22 9.9E-27 171.9 13.3 187 109-298 48-272 (1202)
93 KOG0293 WD40 repeat-containing 99.9 3.9E-22 8.4E-27 158.8 10.8 225 10-263 279-514 (519)
94 KOG0283 WD40 repeat-containing 99.9 6.4E-22 1.4E-26 170.1 12.7 188 106-298 260-473 (712)
95 KOG0288 WD40 repeat protein Ti 99.9 7.7E-22 1.7E-26 157.0 12.1 236 34-298 167-409 (459)
96 KOG0308 Conserved WD40 repeat- 99.9 2.2E-21 4.8E-26 162.4 15.1 191 105-297 66-276 (735)
97 KOG0310 Conserved WD40 repeat- 99.9 2.6E-21 5.6E-26 157.0 14.3 187 107-298 63-260 (487)
98 KOG0772 Uncharacterized conser 99.9 1.3E-21 2.9E-26 159.8 12.4 193 106-298 161-431 (641)
99 KOG0299 U3 snoRNP-associated p 99.9 3E-21 6.4E-26 155.6 13.9 244 35-298 135-402 (479)
100 KOG4283 Transcription-coupled 99.9 1.2E-20 2.7E-25 144.4 16.1 187 109-296 40-266 (397)
101 KOG0268 Sof1-like rRNA process 99.9 4.4E-22 9.5E-27 156.0 7.8 247 13-267 80-350 (433)
102 KOG0301 Phospholipase A2-activ 99.9 1.3E-20 2.9E-25 158.8 16.3 184 103-296 92-279 (745)
103 KOG0300 WD40 repeat-containing 99.9 4E-21 8.6E-26 148.6 11.6 226 35-292 141-414 (481)
104 KOG0646 WD40 repeat protein [G 99.9 2.6E-21 5.6E-26 156.2 10.8 234 23-286 62-329 (476)
105 KOG0264 Nucleosome remodeling 99.9 4.1E-20 8.8E-25 148.8 16.6 189 105-296 117-337 (422)
106 KOG0305 Anaphase promoting com 99.9 7.4E-20 1.6E-24 153.3 18.4 181 111-297 216-408 (484)
107 KOG1446 Histone H3 (Lys4) meth 99.8 5.9E-19 1.3E-23 136.3 21.2 188 107-297 9-208 (311)
108 KOG0301 Phospholipase A2-activ 99.8 6.9E-21 1.5E-25 160.5 11.2 213 14-262 73-288 (745)
109 KOG0306 WD40-repeat-containing 99.8 7.7E-20 1.7E-24 155.7 17.2 170 124-296 426-612 (888)
110 KOG0973 Histone transcription 99.8 6.5E-20 1.4E-24 161.8 17.1 184 110-294 11-237 (942)
111 KOG0302 Ribosome Assembly prot 99.8 1.3E-19 2.9E-24 142.9 16.9 176 110-289 149-360 (440)
112 KOG2445 Nuclear pore complex c 99.8 3.8E-19 8.3E-24 136.9 18.2 231 40-298 11-310 (361)
113 KOG0269 WD40 repeat-containing 99.8 4.6E-20 9.9E-25 157.4 13.9 189 105-296 126-330 (839)
114 KOG2048 WD40 repeat protein [G 99.8 2E-19 4.3E-24 151.4 16.9 227 42-298 25-267 (691)
115 KOG0302 Ribosome Assembly prot 99.8 1.6E-19 3.6E-24 142.4 15.2 195 103-298 202-431 (440)
116 KOG0647 mRNA export protein (c 99.8 2.4E-19 5.2E-24 137.7 14.7 228 40-296 25-271 (347)
117 KOG0270 WD40 repeat-containing 99.8 2.2E-19 4.9E-24 144.3 14.7 186 109-295 240-438 (463)
118 KOG1539 WD repeat protein [Gen 99.8 5.9E-19 1.3E-23 151.8 18.0 180 113-295 449-636 (910)
119 KOG1408 WD40 repeat protein [F 99.8 4E-20 8.7E-25 156.8 10.5 212 83-296 459-703 (1080)
120 KOG0269 WD40 repeat-containing 99.8 7.4E-20 1.6E-24 156.2 11.3 178 117-296 92-284 (839)
121 KOG4378 Nuclear protein COP1 [ 99.8 1.4E-18 3E-23 141.8 16.9 177 108-288 117-305 (673)
122 KOG0639 Transducin-like enhanc 99.8 2.4E-19 5.3E-24 146.4 12.4 182 110-295 417-611 (705)
123 KOG2096 WD40 repeat protein [G 99.8 2.1E-18 4.7E-23 133.5 16.5 190 105-297 79-299 (420)
124 KOG0294 WD40 repeat-containing 99.8 3.3E-18 7.1E-23 132.2 16.8 191 105-298 36-273 (362)
125 KOG1036 Mitotic spindle checkp 99.8 7.7E-18 1.7E-22 129.7 18.6 185 110-297 11-198 (323)
126 KOG0267 Microtubule severing p 99.8 5.8E-20 1.3E-24 155.7 6.5 187 108-297 24-217 (825)
127 KOG0646 WD40 repeat protein [G 99.8 6E-18 1.3E-22 137.0 17.3 186 111-297 80-298 (476)
128 KOG1274 WD40 repeat protein [G 99.8 2.6E-18 5.7E-23 149.3 14.8 231 40-298 11-254 (933)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.3E-18 1.4E-22 139.1 16.3 244 19-295 8-267 (300)
130 KOG0639 Transducin-like enhanc 99.8 2.9E-19 6.3E-24 146.0 7.9 259 34-296 411-694 (705)
131 KOG1332 Vesicle coat complex C 99.8 5E-18 1.1E-22 126.8 12.6 186 109-297 8-232 (299)
132 KOG4283 Transcription-coupled 99.8 1.9E-17 4.2E-22 127.0 15.5 207 40-265 41-279 (397)
133 KOG4378 Nuclear protein COP1 [ 99.8 7.2E-18 1.6E-22 137.7 13.6 172 124-298 93-272 (673)
134 KOG2055 WD40 repeat protein [G 99.8 5.3E-17 1.1E-21 131.4 18.4 201 96-298 191-409 (514)
135 KOG2106 Uncharacterized conser 99.8 1.4E-17 3.1E-22 136.1 15.1 185 105-295 280-510 (626)
136 KOG0270 WD40 repeat-containing 99.8 4.9E-18 1.1E-22 136.7 12.2 230 10-267 190-454 (463)
137 KOG1273 WD40 repeat protein [G 99.8 3E-18 6.5E-23 132.5 10.4 233 34-295 16-268 (405)
138 KOG1034 Transcriptional repres 99.8 4.1E-17 8.8E-22 126.9 14.4 192 105-296 128-373 (385)
139 KOG2055 WD40 repeat protein [G 99.8 5.1E-17 1.1E-21 131.5 15.5 209 88-296 218-502 (514)
140 KOG1007 WD repeat protein TSSC 99.8 1.5E-16 3.3E-21 121.8 17.2 182 110-294 121-348 (370)
141 KOG0642 Cell-cycle nuclear pro 99.7 1.7E-17 3.7E-22 137.3 12.1 237 37-296 289-551 (577)
142 KOG4328 WD40 protein [Function 99.7 6.8E-18 1.5E-22 136.3 9.3 243 27-296 171-440 (498)
143 KOG1274 WD40 repeat protein [G 99.7 4.1E-16 9E-21 135.9 19.7 177 109-291 93-285 (933)
144 KOG2106 Uncharacterized conser 99.7 8.4E-18 1.8E-22 137.5 8.7 274 21-298 266-573 (626)
145 KOG0307 Vesicle coat complex C 99.7 9.8E-18 2.1E-22 149.1 9.5 190 105-296 109-317 (1049)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.4E-15 5.2E-20 123.8 22.2 168 124-295 3-175 (300)
147 KOG2110 Uncharacterized conser 99.7 3.1E-15 6.7E-20 118.2 21.1 180 115-296 49-238 (391)
148 KOG0303 Actin-binding protein 99.7 2.4E-16 5.2E-21 125.4 14.4 228 37-287 76-320 (472)
149 KOG0290 Conserved WD40 repeat- 99.7 2.3E-16 5E-21 120.9 13.7 185 109-296 147-356 (364)
150 KOG1539 WD repeat protein [Gen 99.7 6.6E-17 1.4E-21 139.5 11.8 249 19-297 179-597 (910)
151 KOG4328 WD40 protein [Function 99.7 4.7E-16 1E-20 125.9 15.3 190 105-296 179-389 (498)
152 KOG0321 WD40 repeat-containing 99.7 5.1E-17 1.1E-21 136.3 9.9 239 20-264 120-393 (720)
153 KOG0649 WD40 repeat protein [G 99.7 1.4E-15 3E-20 113.9 16.2 179 101-286 51-256 (325)
154 KOG0303 Actin-binding protein 99.7 1.9E-15 4.1E-20 120.4 16.1 186 106-295 75-282 (472)
155 KOG0650 WD40 repeat nucleolar 99.7 2.5E-15 5.4E-20 125.6 17.5 189 105-297 393-628 (733)
156 KOG0650 WD40 repeat nucleolar 99.7 2.4E-16 5.1E-21 131.6 11.4 192 105-296 514-725 (733)
157 KOG1408 WD40 repeat protein [F 99.7 4.7E-16 1E-20 132.5 13.3 223 12-262 471-713 (1080)
158 KOG0321 WD40 repeat-containing 99.7 1.7E-15 3.6E-20 127.4 15.1 193 105-297 93-338 (720)
159 KOG0322 G-protein beta subunit 99.7 1.1E-15 2.3E-20 115.7 12.0 190 105-296 7-313 (323)
160 KOG0644 Uncharacterized conser 99.7 3.9E-17 8.4E-22 141.0 4.1 228 33-293 181-455 (1113)
161 KOG2919 Guanine nucleotide-bin 99.7 8.4E-15 1.8E-19 114.0 16.5 174 124-297 125-318 (406)
162 KOG1188 WD40 repeat protein [G 99.7 6.2E-15 1.3E-19 115.4 14.5 162 124-288 42-223 (376)
163 KOG1007 WD repeat protein TSSC 99.6 5.1E-15 1.1E-19 113.5 13.6 187 105-295 56-278 (370)
164 KOG0649 WD40 repeat protein [G 99.6 2.4E-14 5.2E-19 107.4 16.5 168 124-295 24-225 (325)
165 KOG0771 Prolactin regulatory e 99.6 6E-15 1.3E-19 118.4 14.0 178 116-295 148-343 (398)
166 KOG1310 WD40 repeat protein [G 99.6 3.8E-15 8.2E-20 123.5 12.4 157 105-262 43-231 (758)
167 KOG1524 WD40 repeat-containing 99.6 5.1E-15 1.1E-19 122.4 12.3 176 106-298 98-278 (737)
168 KOG2048 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 115.1 22.4 187 108-295 21-222 (691)
169 KOG2445 Nuclear pore complex c 99.6 1.5E-13 3.2E-18 106.4 19.0 187 109-297 10-248 (361)
170 KOG1538 Uncharacterized conser 99.6 5.1E-14 1.1E-18 119.5 17.4 209 86-298 15-285 (1081)
171 KOG1009 Chromatin assembly com 99.6 2.9E-14 6.3E-19 114.0 13.9 183 112-295 13-249 (434)
172 KOG1273 WD40 repeat protein [G 99.6 1.3E-13 2.8E-18 107.2 16.6 181 115-296 26-216 (405)
173 KOG0642 Cell-cycle nuclear pro 99.6 7E-16 1.5E-20 127.9 3.9 234 19-274 313-573 (577)
174 KOG4227 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 110.3 14.7 238 34-295 48-376 (609)
175 KOG0322 G-protein beta subunit 99.6 3.9E-14 8.5E-19 107.4 11.1 151 111-261 149-322 (323)
176 KOG0307 Vesicle coat complex C 99.6 7.8E-15 1.7E-19 130.9 8.1 226 13-265 81-330 (1049)
177 KOG2111 Uncharacterized conser 99.6 1.2E-12 2.7E-17 101.9 18.9 163 132-297 75-247 (346)
178 KOG1034 Transcriptional repres 99.6 2.5E-13 5.5E-18 106.1 15.2 93 203-297 105-202 (385)
179 KOG2110 Uncharacterized conser 99.6 5.4E-13 1.2E-17 105.8 17.1 150 112-263 87-249 (391)
180 KOG1063 RNA polymerase II elon 99.6 1.5E-13 3.2E-18 116.9 14.7 190 105-297 47-288 (764)
181 KOG1445 Tumor-specific antigen 99.5 5.6E-14 1.2E-18 118.6 11.1 169 128-298 599-786 (1012)
182 KOG1517 Guanine nucleotide bin 99.5 2.2E-13 4.7E-18 121.0 14.7 175 118-295 1171-1370(1387)
183 KOG2919 Guanine nucleotide-bin 99.5 3.4E-14 7.4E-19 110.7 8.2 216 16-254 127-362 (406)
184 KOG1063 RNA polymerase II elon 99.5 2.8E-13 6.1E-18 115.2 14.0 181 105-287 518-734 (764)
185 KOG1524 WD40 repeat-containing 99.5 1.8E-13 3.8E-18 113.4 12.1 167 124-296 77-246 (737)
186 COG2319 FOG: WD40 repeat [Gene 99.5 1.7E-11 3.8E-16 104.9 25.3 188 103-294 146-346 (466)
187 KOG2394 WD40 protein DMR-N9 [G 99.5 4.7E-13 1E-17 110.9 14.2 160 112-286 219-384 (636)
188 KOG1009 Chromatin assembly com 99.5 2.4E-13 5.2E-18 108.9 12.0 145 149-296 11-185 (434)
189 KOG4227 WD40 repeat protein [G 99.5 5.5E-13 1.2E-17 106.7 13.8 188 106-293 50-261 (609)
190 KOG1272 WD40-repeat-containing 99.5 2.5E-14 5.4E-19 116.4 6.1 174 113-290 171-348 (545)
191 KOG1587 Cytoplasmic dynein int 99.5 1.1E-12 2.4E-17 113.4 16.5 185 111-298 241-508 (555)
192 KOG1517 Guanine nucleotide bin 99.5 1.6E-12 3.4E-17 115.8 17.3 185 112-296 1109-1324(1387)
193 PF08662 eIF2A: Eukaryotic tra 99.5 4.1E-12 8.9E-17 97.1 17.2 136 155-297 9-164 (194)
194 KOG1523 Actin-related protein 99.5 2E-12 4.3E-17 100.8 15.3 185 107-294 5-224 (361)
195 KOG1240 Protein kinase contain 99.5 3.4E-12 7.3E-17 115.2 18.9 194 102-296 1038-1261(1431)
196 KOG1445 Tumor-specific antigen 99.5 1.4E-13 3.1E-18 116.2 9.5 134 161-296 589-740 (1012)
197 KOG3881 Uncharacterized conser 99.5 3.3E-12 7.1E-17 102.0 16.6 190 106-297 99-311 (412)
198 KOG1188 WD40 repeat protein [G 99.5 8E-13 1.7E-17 103.8 12.6 164 105-270 63-250 (376)
199 PRK01742 tolB translocation pr 99.5 9E-12 1.9E-16 107.5 19.7 183 105-296 196-391 (429)
200 KOG1523 Actin-related protein 99.5 6.8E-13 1.5E-17 103.3 11.0 223 42-293 10-266 (361)
201 KOG4547 WD40 repeat-containing 99.4 2.5E-11 5.5E-16 101.8 18.6 167 124-295 7-208 (541)
202 PRK01742 tolB translocation pr 99.4 1.8E-12 3.8E-17 111.9 11.3 231 21-287 183-426 (429)
203 COG2319 FOG: WD40 repeat [Gene 99.4 1.9E-10 4.2E-15 98.5 23.8 186 107-296 60-261 (466)
204 KOG1272 WD40-repeat-containing 99.4 4.8E-13 1E-17 109.0 6.8 177 117-297 134-314 (545)
205 PRK11028 6-phosphogluconolacto 99.4 1.3E-10 2.8E-15 97.1 21.8 180 114-296 81-293 (330)
206 KOG2111 Uncharacterized conser 99.4 5.2E-11 1.1E-15 93.0 17.3 152 110-263 92-257 (346)
207 KOG1538 Uncharacterized conser 99.4 1.5E-11 3.2E-16 104.8 15.4 218 10-262 63-293 (1081)
208 PRK04922 tolB translocation pr 99.4 1.1E-10 2.5E-15 100.9 21.3 186 105-296 196-398 (433)
209 PRK03629 tolB translocation pr 99.4 2.5E-10 5.5E-15 98.4 22.6 186 106-296 192-393 (429)
210 PF08662 eIF2A: Eukaryotic tra 99.4 9.7E-11 2.1E-15 89.6 17.9 134 133-271 38-187 (194)
211 PRK05137 tolB translocation pr 99.4 2.9E-10 6.2E-15 98.5 22.6 185 105-295 194-395 (435)
212 KOG2139 WD40 repeat protein [G 99.4 6.5E-11 1.4E-15 94.0 16.7 179 114-295 100-299 (445)
213 KOG3881 Uncharacterized conser 99.4 2.2E-11 4.9E-16 97.4 14.0 160 124-287 163-342 (412)
214 KOG1963 WD40 repeat protein [G 99.3 1.5E-10 3.3E-15 101.4 18.7 187 105-294 50-310 (792)
215 PRK02889 tolB translocation pr 99.3 3.3E-10 7E-15 97.8 20.7 185 106-296 189-390 (427)
216 KOG0644 Uncharacterized conser 99.3 9.5E-13 2.1E-17 114.4 4.6 179 105-290 183-409 (1113)
217 PF02239 Cytochrom_D1: Cytochr 99.3 6.1E-10 1.3E-14 93.6 21.0 170 124-296 8-191 (369)
218 KOG0290 Conserved WD40 repeat- 99.3 6E-11 1.3E-15 91.6 12.8 181 110-295 94-307 (364)
219 PRK11028 6-phosphogluconolacto 99.3 6.3E-10 1.4E-14 93.0 20.3 170 125-296 5-194 (330)
220 KOG0771 Prolactin regulatory e 99.3 5.7E-11 1.2E-15 95.9 13.1 174 89-263 150-355 (398)
221 KOG1334 WD40 repeat protein [G 99.3 3.5E-12 7.6E-17 104.6 6.0 258 37-296 137-456 (559)
222 TIGR02800 propeller_TolB tol-p 99.3 1.2E-09 2.5E-14 94.5 21.7 186 105-296 182-384 (417)
223 KOG2321 WD40 repeat protein [G 99.3 2.2E-11 4.7E-16 102.0 10.3 169 124-295 147-332 (703)
224 PRK03629 tolB translocation pr 99.3 1.8E-10 3.9E-15 99.4 16.2 166 115-286 245-427 (429)
225 KOG4497 Uncharacterized conser 99.3 8.8E-11 1.9E-15 92.2 11.7 197 90-297 15-231 (447)
226 KOG1310 WD40 repeat protein [G 99.2 3.4E-11 7.3E-16 100.5 8.8 153 144-298 42-223 (758)
227 KOG0974 WD-repeat protein WDR6 99.2 6.6E-10 1.4E-14 99.2 16.4 173 121-297 98-279 (967)
228 KOG2139 WD40 repeat protein [G 99.2 2.8E-09 6E-14 85.0 17.4 181 111-294 139-363 (445)
229 PRK00178 tolB translocation pr 99.2 1.3E-08 2.8E-13 88.3 22.7 186 105-296 191-393 (430)
230 PRK05137 tolB translocation pr 99.2 8.2E-09 1.8E-13 89.5 21.4 159 132-295 182-352 (435)
231 KOG2394 WD40 protein DMR-N9 [G 99.2 1.3E-10 2.9E-15 96.6 9.4 89 153-242 292-383 (636)
232 PRK04922 tolB translocation pr 99.2 4.9E-09 1.1E-13 90.8 18.4 159 132-295 184-354 (433)
233 KOG1963 WD40 repeat protein [G 99.2 4.6E-09 9.9E-14 92.3 17.9 186 109-294 202-416 (792)
234 KOG1334 WD40 repeat protein [G 99.2 2.5E-10 5.4E-15 94.0 9.5 187 105-292 135-352 (559)
235 KOG4497 Uncharacterized conser 99.1 1.2E-09 2.6E-14 86.0 12.3 183 109-294 88-379 (447)
236 PRK02889 tolB translocation pr 99.1 6.3E-09 1.4E-13 89.9 17.8 158 132-295 176-346 (427)
237 PRK04792 tolB translocation pr 99.1 3.3E-08 7.1E-13 85.8 21.3 183 108-296 213-412 (448)
238 KOG0280 Uncharacterized conser 99.1 3.3E-09 7.1E-14 82.3 13.2 176 118-297 127-322 (339)
239 KOG0280 Uncharacterized conser 99.1 1.5E-08 3.3E-13 78.6 16.8 173 112-288 69-265 (339)
240 KOG4190 Uncharacterized conser 99.1 2.1E-10 4.5E-15 96.2 5.5 217 35-272 728-958 (1034)
241 KOG2321 WD40 repeat protein [G 99.1 1.8E-08 3.9E-13 85.0 16.8 187 110-298 49-250 (703)
242 KOG1240 Protein kinase contain 99.0 1.9E-08 4.1E-13 91.7 17.6 215 35-273 1041-1284(1431)
243 TIGR02800 propeller_TolB tol-p 99.0 6.4E-08 1.4E-12 83.7 20.4 160 132-296 170-341 (417)
244 KOG3914 WD repeat protein WDR4 99.0 9.6E-09 2.1E-13 82.9 13.8 147 124-271 76-232 (390)
245 KOG1587 Cytoplasmic dynein int 99.0 1.8E-08 3.9E-13 87.7 16.3 159 131-293 221-458 (555)
246 KOG0974 WD-repeat protein WDR6 99.0 3.3E-09 7.1E-14 94.9 11.9 139 124-263 147-289 (967)
247 KOG4190 Uncharacterized conser 99.0 1.5E-09 3.2E-14 91.2 9.2 166 105-271 728-915 (1034)
248 KOG2315 Predicted translation 99.0 2.5E-07 5.5E-12 77.9 20.9 240 21-298 104-376 (566)
249 KOG2695 WD40 repeat protein [G 99.0 2.9E-09 6.3E-14 84.3 8.5 162 124-286 226-402 (425)
250 PRK01029 tolB translocation pr 99.0 3E-07 6.6E-12 79.3 21.5 183 108-294 180-388 (428)
251 PRK00178 tolB translocation pr 99.0 1.6E-07 3.5E-12 81.5 19.9 158 133-295 180-349 (430)
252 PRK04792 tolB translocation pr 99.0 2.3E-07 5E-12 80.6 20.5 158 133-295 199-368 (448)
253 KOG1064 RAVE (regulator of V-A 98.9 4.6E-09 1E-13 98.9 8.7 158 109-271 2205-2375(2439)
254 KOG4532 WD40-like repeat conta 98.9 2.5E-07 5.4E-12 71.2 16.4 170 124-293 130-319 (344)
255 PF02239 Cytochrom_D1: Cytochr 98.9 9E-07 2E-11 74.6 21.3 166 105-271 29-211 (369)
256 PF10282 Lactonase: Lactonase, 98.8 1.2E-05 2.5E-10 67.8 25.7 178 117-296 91-311 (345)
257 COG4946 Uncharacterized protei 98.8 1.7E-06 3.7E-11 71.9 19.7 164 124-293 334-505 (668)
258 KOG1354 Serine/threonine prote 98.8 1.1E-07 2.4E-12 75.6 11.9 184 112-297 25-293 (433)
259 KOG1354 Serine/threonine prote 98.8 7.2E-08 1.6E-12 76.6 10.3 185 112-297 84-350 (433)
260 PF00400 WD40: WD domain, G-be 98.8 2E-08 4.2E-13 55.3 5.3 38 223-260 1-39 (39)
261 KOG2041 WD40 repeat protein [G 98.8 7.3E-08 1.6E-12 83.6 10.8 190 105-297 64-279 (1189)
262 PRK04043 tolB translocation pr 98.8 1.1E-05 2.4E-10 69.4 23.7 174 114-295 189-386 (419)
263 TIGR02658 TTQ_MADH_Hv methylam 98.7 1.5E-05 3.2E-10 66.2 23.0 162 130-295 75-318 (352)
264 KOG1064 RAVE (regulator of V-A 98.7 1.6E-08 3.5E-13 95.4 5.4 149 113-274 2252-2410(2439)
265 KOG4547 WD40 repeat-containing 98.7 5.6E-07 1.2E-11 76.3 12.8 133 161-295 3-163 (541)
266 KOG1409 Uncharacterized conser 98.6 3.3E-07 7.2E-12 72.9 9.9 164 100-263 185-395 (404)
267 PRK01029 tolB translocation pr 98.6 3.6E-06 7.8E-11 72.7 17.1 161 132-295 165-345 (428)
268 PF10282 Lactonase: Lactonase, 98.6 5E-05 1.1E-09 63.9 23.2 171 125-296 2-211 (345)
269 PF00400 WD40: WD domain, G-be 98.6 2E-07 4.3E-12 51.2 6.0 35 104-138 3-39 (39)
270 KOG2315 Predicted translation 98.6 6.3E-06 1.4E-10 69.8 17.2 146 133-286 252-410 (566)
271 KOG4714 Nucleoporin [Nuclear s 98.6 7.2E-07 1.6E-11 68.4 10.6 158 105-262 82-254 (319)
272 TIGR03300 assembly_YfgL outer 98.6 4.6E-06 1E-10 71.1 17.0 148 122-275 190-351 (377)
273 KOG4532 WD40-like repeat conta 98.6 4.8E-06 1E-10 64.3 14.6 166 122-289 84-263 (344)
274 KOG1832 HIV-1 Vpr-binding prot 98.6 4.9E-08 1.1E-12 86.6 4.2 181 105-295 1094-1285(1516)
275 PF13360 PQQ_2: PQQ-like domai 98.6 3.6E-05 7.7E-10 61.1 20.2 168 121-295 35-219 (238)
276 KOG1409 Uncharacterized conser 98.5 3.9E-06 8.4E-11 67.0 13.3 188 105-295 17-259 (404)
277 KOG2066 Vacuolar assembly/sort 98.5 2.8E-06 6E-11 74.9 12.8 171 111-291 38-220 (846)
278 COG4946 Uncharacterized protei 98.5 3.6E-05 7.7E-10 64.3 18.1 89 203-294 371-461 (668)
279 KOG0882 Cyclophilin-related pe 98.5 1.2E-06 2.6E-11 72.2 9.3 198 101-298 42-298 (558)
280 PF08450 SGL: SMP-30/Gluconola 98.5 0.0004 8.6E-09 55.5 26.2 175 115-294 42-243 (246)
281 KOG2314 Translation initiation 98.5 1.9E-05 4.1E-10 67.1 16.1 96 197-296 451-557 (698)
282 PLN02919 haloacid dehalogenase 98.4 4.9E-05 1.1E-09 72.7 20.7 149 117-266 687-892 (1057)
283 PF13360 PQQ_2: PQQ-like domai 98.4 0.00011 2.4E-09 58.3 19.9 143 130-274 1-152 (238)
284 PLN02919 haloacid dehalogenase 98.4 0.00013 2.8E-09 69.9 22.9 179 116-295 627-877 (1057)
285 COG2706 3-carboxymuconate cycl 98.4 0.00048 1E-08 55.8 22.0 186 110-295 37-262 (346)
286 TIGR03300 assembly_YfgL outer 98.4 1.5E-05 3.3E-10 68.0 14.4 133 121-259 240-376 (377)
287 PF15492 Nbas_N: Neuroblastoma 98.4 0.00038 8.3E-09 54.7 20.3 177 121-298 7-251 (282)
288 KOG1275 PAB-dependent poly(A) 98.4 1.5E-05 3.2E-10 71.5 13.9 147 114-261 179-341 (1118)
289 KOG1275 PAB-dependent poly(A) 98.4 1.2E-05 2.7E-10 72.0 13.3 167 124-295 149-331 (1118)
290 KOG2041 WD40 repeat protein [G 98.3 4.7E-06 1E-10 72.8 10.4 151 111-262 13-186 (1189)
291 COG5170 CDC55 Serine/threonine 98.3 2.6E-06 5.6E-11 67.2 7.7 186 111-297 25-301 (460)
292 PRK04043 tolB translocation pr 98.3 0.00017 3.6E-09 62.2 19.5 156 132-295 169-337 (419)
293 PF04762 IKI3: IKI3 family; I 98.3 0.00014 3.1E-09 68.4 20.4 182 111-294 74-322 (928)
294 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00037 8.1E-09 58.0 20.7 97 132-229 27-144 (352)
295 KOG1645 RING-finger-containing 98.3 1.5E-05 3.3E-10 65.0 11.4 77 107-183 188-269 (463)
296 KOG4714 Nucleoporin [Nuclear s 98.3 3.6E-06 7.8E-11 64.7 7.4 191 104-298 27-246 (319)
297 KOG3914 WD repeat protein WDR4 98.3 1.1E-05 2.3E-10 65.7 10.4 99 129-230 129-232 (390)
298 PF11768 DUF3312: Protein of u 98.3 0.00011 2.3E-09 63.3 16.7 129 133-263 185-330 (545)
299 COG2706 3-carboxymuconate cycl 98.3 0.0014 3E-08 53.2 21.8 181 116-296 92-310 (346)
300 KOG2066 Vacuolar assembly/sort 98.2 0.00012 2.7E-09 64.9 16.6 133 124-262 85-233 (846)
301 KOG0309 Conserved WD40 repeat- 98.2 5.9E-06 1.3E-10 72.4 8.5 116 106-221 108-232 (1081)
302 KOG2695 WD40 repeat protein [G 98.2 5E-06 1.1E-10 66.5 7.0 119 112-230 252-385 (425)
303 KOG0309 Conserved WD40 repeat- 98.2 8.9E-06 1.9E-10 71.3 9.0 165 124-289 83-258 (1081)
304 KOG0882 Cyclophilin-related pe 98.1 1.4E-05 3.1E-10 66.1 8.7 184 110-293 7-218 (558)
305 PRK02888 nitrous-oxide reducta 98.1 0.00031 6.8E-09 61.9 17.2 168 129-297 212-452 (635)
306 PF05096 Glu_cyclase_2: Glutam 98.1 0.0023 5.1E-08 50.6 23.0 181 116-298 48-253 (264)
307 PRK11138 outer membrane biogen 98.1 0.00025 5.5E-09 60.9 16.6 148 122-273 205-364 (394)
308 COG5170 CDC55 Serine/threonine 98.1 6.1E-05 1.3E-09 59.7 11.1 183 113-296 86-357 (460)
309 KOG2314 Translation initiation 98.1 0.00011 2.4E-09 62.6 12.7 133 156-293 215-363 (698)
310 PF15492 Nbas_N: Neuroblastoma 98.1 0.0017 3.6E-08 51.2 17.9 158 116-274 47-271 (282)
311 PF04762 IKI3: IKI3 family; I 98.0 0.0016 3.4E-08 61.6 20.9 174 111-288 119-360 (928)
312 PRK11138 outer membrane biogen 98.0 0.00031 6.8E-09 60.3 15.3 135 121-261 255-393 (394)
313 KOG1912 WD40 repeat protein [G 98.0 0.00014 3.1E-09 64.4 12.2 140 114-286 17-165 (1062)
314 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.00071 1.5E-08 52.6 14.6 123 161-286 20-145 (354)
315 PF11768 DUF3312: Protein of u 97.9 0.00011 2.4E-09 63.2 10.6 88 135-223 239-331 (545)
316 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0013 2.9E-08 44.4 13.3 90 124-216 17-109 (111)
317 PF08553 VID27: VID27 cytoplas 97.9 0.0004 8.6E-09 63.4 14.1 87 206-295 545-637 (794)
318 KOG3621 WD40 repeat-containing 97.9 0.00017 3.6E-09 63.3 11.0 128 156-285 38-179 (726)
319 PF08450 SGL: SMP-30/Gluconola 97.9 0.003 6.6E-08 50.4 17.6 132 157-295 5-152 (246)
320 KOG1920 IkappaB kinase complex 97.9 0.0017 3.6E-08 60.7 17.5 176 113-293 69-306 (1265)
321 KOG2114 Vacuolar assembly/sort 97.9 0.0021 4.5E-08 57.9 17.2 178 114-295 27-234 (933)
322 COG0823 TolB Periplasmic compo 97.8 0.0019 4.1E-08 55.6 16.3 159 132-295 218-388 (425)
323 COG5354 Uncharacterized protei 97.8 0.0028 6.1E-08 53.8 15.7 159 128-294 198-377 (561)
324 KOG1912 WD40 repeat protein [G 97.8 0.0036 7.7E-08 56.0 17.0 188 105-294 48-292 (1062)
325 PF04053 Coatomer_WDAD: Coatom 97.8 0.0052 1.1E-07 53.2 17.9 131 153-296 34-164 (443)
326 PF08596 Lgl_C: Lethal giant l 97.7 0.0059 1.3E-07 52.1 17.7 196 100-295 74-325 (395)
327 COG5354 Uncharacterized protei 97.7 0.0013 2.7E-08 55.8 13.2 152 132-297 255-420 (561)
328 PF03178 CPSF_A: CPSF A subuni 97.7 0.021 4.5E-07 47.7 20.2 137 124-262 44-202 (321)
329 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.8E-09 38.8 4.8 37 224-260 3-40 (40)
330 PF06977 SdiA-regulated: SdiA- 97.7 0.018 3.9E-07 45.8 21.0 186 107-294 16-239 (248)
331 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.0092 2E-07 46.6 15.2 132 124-256 25-159 (354)
332 PF12937 F-box-like: F-box-lik 97.6 4.3E-05 9.2E-10 43.7 1.8 46 24-69 1-46 (47)
333 KOG4640 Anaphase-promoting com 97.5 0.00056 1.2E-08 59.4 8.8 89 196-286 25-115 (665)
334 KOG2114 Vacuolar assembly/sort 97.5 0.0019 4.1E-08 58.2 12.1 134 157-290 29-185 (933)
335 PF07433 DUF1513: Protein of u 97.5 0.041 8.8E-07 44.7 20.7 169 121-296 60-276 (305)
336 COG3391 Uncharacterized conser 97.5 0.057 1.2E-06 46.2 20.6 169 124-294 88-270 (381)
337 COG0823 TolB Periplasmic compo 97.5 0.0098 2.1E-07 51.3 15.3 158 133-295 174-344 (425)
338 KOG2395 Protein involved in va 97.4 0.0034 7.3E-08 53.8 12.0 137 124-262 348-500 (644)
339 PF06433 Me-amine-dh_H: Methyl 97.4 0.02 4.3E-07 47.1 16.0 151 123-274 148-332 (342)
340 PF00780 CNH: CNH domain; Int 97.4 0.048 1E-06 44.3 18.8 144 122-269 7-172 (275)
341 PRK02888 nitrous-oxide reducta 97.4 0.016 3.5E-07 51.5 16.2 82 212-297 214-341 (635)
342 PF07433 DUF1513: Protein of u 97.4 0.029 6.4E-07 45.5 16.2 138 157-296 10-182 (305)
343 cd00216 PQQ_DH Dehydrogenases 97.4 0.04 8.7E-07 48.8 18.7 137 133-274 257-436 (488)
344 cd00216 PQQ_DH Dehydrogenases 97.4 0.015 3.3E-07 51.5 16.0 152 120-271 59-273 (488)
345 KOG3621 WD40 repeat-containing 97.4 0.0022 4.7E-08 56.6 10.2 134 116-249 39-186 (726)
346 PF03178 CPSF_A: CPSF A subuni 97.4 0.018 4E-07 48.0 15.7 160 132-296 2-192 (321)
347 KOG2444 WD40 repeat protein [G 97.3 0.00049 1.1E-08 52.4 5.4 138 124-262 32-177 (238)
348 smart00320 WD40 WD40 repeats. 97.3 0.00097 2.1E-08 35.2 5.3 34 105-138 5-40 (40)
349 KOG1008 Uncharacterized conser 97.3 6.5E-05 1.4E-09 65.1 0.1 175 113-289 57-256 (783)
350 KOG1645 RING-finger-containing 97.3 0.00099 2.1E-08 54.8 6.7 69 196-265 198-269 (463)
351 PF04841 Vps16_N: Vps16, N-ter 97.3 0.097 2.1E-06 45.2 19.2 50 133-183 62-112 (410)
352 KOG3617 WD40 and TPR repeat-co 97.3 0.00061 1.3E-08 61.3 5.9 100 194-297 18-122 (1416)
353 KOG1008 Uncharacterized conser 97.3 8.2E-05 1.8E-09 64.5 0.5 154 109-262 99-275 (783)
354 COG3823 Glutamine cyclotransfe 97.3 0.037 8.1E-07 41.9 14.2 179 118-299 51-252 (262)
355 PF04053 Coatomer_WDAD: Coatom 97.2 0.046 1E-06 47.5 16.5 164 109-287 29-207 (443)
356 PF04841 Vps16_N: Vps16, N-ter 97.1 0.16 3.4E-06 44.0 20.8 167 113-288 81-271 (410)
357 COG3391 Uncharacterized conser 97.1 0.1 2.3E-06 44.6 17.8 159 133-295 54-225 (381)
358 KOG2395 Protein involved in va 97.1 0.01 2.2E-07 50.9 11.0 130 161-295 343-490 (644)
359 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.051 1.1E-06 36.9 12.3 72 205-284 17-88 (111)
360 KOG4640 Anaphase-promoting com 97.0 0.0049 1.1E-07 53.8 8.8 93 151-243 20-115 (665)
361 PF12894 Apc4_WD40: Anaphase-p 96.9 0.004 8.7E-08 35.2 4.9 34 233-267 11-45 (47)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.22 4.9E-06 44.5 18.1 62 213-274 441-502 (527)
363 KOG1920 IkappaB kinase complex 96.7 0.059 1.3E-06 51.0 13.3 140 152-294 69-259 (1265)
364 COG3386 Gluconolactonase [Carb 96.6 0.34 7.3E-06 40.0 20.2 167 124-295 79-274 (307)
365 KOG4499 Ca2+-binding protein R 96.5 0.26 5.6E-06 38.3 14.5 126 157-285 114-262 (310)
366 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.14 3E-06 43.4 14.1 53 131-183 22-74 (353)
367 KOG2247 WD40 repeat-containing 96.3 0.00078 1.7E-08 57.0 -0.7 139 118-257 41-183 (615)
368 KOG1832 HIV-1 Vpr-binding prot 96.2 0.01 2.2E-07 54.1 5.8 72 224-297 1092-1164(1516)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 0.83 1.8E-05 41.0 17.7 152 121-273 68-290 (527)
370 PHA02713 hypothetical protein; 96.1 0.52 1.1E-05 42.6 15.8 172 122-298 303-523 (557)
371 PF05096 Glu_cyclase_2: Glutam 96.0 0.61 1.3E-05 37.3 15.3 130 143-274 34-169 (264)
372 KOG3617 WD40 and TPR repeat-co 96.0 0.033 7.1E-07 50.8 7.6 104 157-262 21-131 (1416)
373 PF08553 VID27: VID27 cytoplas 96.0 0.22 4.7E-06 46.2 13.0 136 125-261 497-646 (794)
374 COG5167 VID27 Protein involved 95.9 0.24 5.1E-06 42.9 12.1 137 124-262 482-632 (776)
375 PF14727 PHTB1_N: PTHB1 N-term 95.9 0.89 1.9E-05 39.2 15.8 137 124-261 39-203 (418)
376 PHA02713 hypothetical protein; 95.9 0.23 5.1E-06 44.8 12.9 141 124-266 354-537 (557)
377 PF00646 F-box: F-box domain; 95.9 0.009 1.9E-07 34.0 2.7 44 23-66 2-45 (48)
378 KOG4499 Ca2+-binding protein R 95.9 0.36 7.7E-06 37.5 11.7 93 157-249 163-271 (310)
379 PF07569 Hira: TUP1-like enhan 95.9 0.11 2.4E-06 40.6 9.5 69 114-182 14-97 (219)
380 KOG2444 WD40 repeat protein [G 95.8 0.029 6.2E-07 43.1 5.7 126 167-294 35-163 (238)
381 PF12894 Apc4_WD40: Anaphase-p 95.7 0.064 1.4E-06 30.3 5.5 31 150-180 10-41 (47)
382 PF02897 Peptidase_S9_N: Proly 95.7 1.3 2.8E-05 38.5 16.5 108 157-264 129-262 (414)
383 KOG4441 Proteins containing BT 95.6 1.2 2.6E-05 40.4 16.3 148 118-266 328-503 (571)
384 smart00256 FBOX A Receptor for 95.6 0.018 4E-07 31.3 3.1 39 27-65 1-39 (41)
385 KOG2079 Vacuolar assembly/sort 95.5 0.084 1.8E-06 49.4 8.3 96 164-261 100-202 (1206)
386 KOG2079 Vacuolar assembly/sort 95.3 0.055 1.2E-06 50.6 6.8 96 198-294 94-193 (1206)
387 COG3386 Gluconolactonase [Carb 95.3 0.68 1.5E-05 38.3 12.6 115 136-251 145-275 (307)
388 PHA03098 kelch-like protein; P 95.3 1.1 2.3E-05 40.5 15.0 144 121-265 294-467 (534)
389 TIGR03074 PQQ_membr_DH membran 95.2 2.4 5.2E-05 39.9 16.9 148 124-271 262-486 (764)
390 PRK13616 lipoprotein LpqB; Pro 95.0 1.8 3.9E-05 39.4 15.3 132 154-292 352-512 (591)
391 TIGR02604 Piru_Ver_Nterm putat 94.6 2.3 5E-05 36.3 14.5 135 153-293 15-200 (367)
392 KOG1897 Damage-specific DNA bi 94.5 4.1 8.9E-05 38.6 16.1 159 133-293 751-930 (1096)
393 COG1520 FOG: WD40-like repeat 94.5 2.7 5.8E-05 35.9 16.0 150 121-270 67-225 (370)
394 PF12234 Rav1p_C: RAVE protein 94.5 1.6 3.4E-05 39.7 13.3 88 207-295 45-147 (631)
395 KOG2280 Vacuolar assembly/sort 94.3 0.89 1.9E-05 41.4 11.3 53 129-182 61-114 (829)
396 COG5167 VID27 Protein involved 94.2 0.72 1.6E-05 40.1 10.2 132 157-295 473-622 (776)
397 PF10313 DUF2415: Uncharacteri 93.7 0.4 8.6E-06 26.4 5.2 31 234-264 1-35 (43)
398 KOG4441 Proteins containing BT 93.7 3.2 6.8E-05 37.8 13.9 141 124-265 287-455 (571)
399 PF14583 Pectate_lyase22: Olig 93.4 4.3 9.4E-05 34.5 18.7 172 121-293 45-254 (386)
400 PHA03098 kelch-like protein; P 93.3 3.5 7.5E-05 37.2 13.7 141 124-265 345-514 (534)
401 KOG3630 Nuclear pore complex, 93.2 2.1 4.5E-05 41.1 11.9 137 155-293 104-260 (1405)
402 PF00930 DPPIV_N: Dipeptidyl p 93.2 4.7 0.0001 34.2 18.1 161 133-296 159-347 (353)
403 PF14583 Pectate_lyase22: Olig 93.2 4.8 0.0001 34.2 15.6 152 138-292 16-203 (386)
404 KOG2247 WD40 repeat-containing 92.9 0.027 5.9E-07 48.1 -0.2 138 153-294 36-177 (615)
405 KOG3630 Nuclear pore complex, 92.7 0.42 9.1E-06 45.4 6.9 97 197-296 106-218 (1405)
406 TIGR03074 PQQ_membr_DH membran 92.2 3.9 8.5E-05 38.5 12.6 67 204-271 261-353 (764)
407 COG3490 Uncharacterized protei 92.2 5.4 0.00012 32.3 14.6 155 142-296 58-245 (366)
408 PF11715 Nup160: Nucleoporin N 91.8 1.2 2.5E-05 40.4 8.8 71 202-272 157-258 (547)
409 PF00780 CNH: CNH domain; Int 91.4 6.6 0.00014 31.8 17.8 145 124-274 106-267 (275)
410 PF02897 Peptidase_S9_N: Proly 91.4 8.9 0.00019 33.3 22.5 147 118-265 129-312 (414)
411 PF10647 Gmad1: Lipoprotein Lp 91.1 6.9 0.00015 31.4 16.1 139 153-295 25-184 (253)
412 PF12234 Rav1p_C: RAVE protein 90.8 13 0.00028 34.1 13.9 104 157-262 35-156 (631)
413 PHA02790 Kelch-like protein; P 90.5 12 0.00027 33.3 15.3 165 124-296 274-455 (480)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 90.4 3.6 7.7E-05 35.6 9.8 79 196-274 312-410 (415)
415 PF07569 Hira: TUP1-like enhan 90.4 2.3 5.1E-05 33.2 8.1 68 197-264 16-97 (219)
416 COG3204 Uncharacterized protei 89.8 9.6 0.00021 31.0 19.0 184 109-293 82-300 (316)
417 PF08596 Lgl_C: Lethal giant l 89.8 12 0.00027 32.2 19.5 157 114-271 3-252 (395)
418 smart00564 PQQ beta-propeller 89.7 1.5 3.2E-05 22.2 4.6 28 121-148 5-32 (33)
419 PF05694 SBP56: 56kDa selenium 89.1 14 0.00031 32.0 15.0 166 132-297 157-395 (461)
420 PF10168 Nup88: Nuclear pore c 88.8 15 0.00032 34.5 13.0 33 232-264 145-181 (717)
421 PF14761 HPS3_N: Hermansky-Pud 88.7 4 8.6E-05 31.5 7.9 55 236-293 20-76 (215)
422 TIGR02276 beta_rpt_yvtn 40-res 88.6 2.2 4.8E-05 22.9 5.1 36 246-284 6-41 (42)
423 TIGR02276 beta_rpt_yvtn 40-res 88.5 2.5 5.5E-05 22.7 5.6 36 124-159 6-41 (42)
424 TIGR03118 PEPCTERM_chp_1 conse 88.5 13 0.00027 30.6 17.2 161 124-286 102-307 (336)
425 PHA02790 Kelch-like protein; P 88.2 18 0.0004 32.2 15.5 138 124-265 321-473 (480)
426 COG3490 Uncharacterized protei 87.9 8.3 0.00018 31.3 9.3 96 197-294 73-179 (366)
427 PF15390 DUF4613: Domain of un 87.9 6.5 0.00014 35.2 9.5 88 204-294 73-173 (671)
428 KOG1916 Nuclear protein, conta 87.7 0.47 1E-05 44.1 2.8 83 203-287 195-294 (1283)
429 PF14870 PSII_BNR: Photosynthe 87.5 15 0.00032 30.4 21.4 179 115-296 64-252 (302)
430 PF08728 CRT10: CRT10; InterP 87.4 25 0.00054 32.8 14.3 92 206-298 117-238 (717)
431 PF14781 BBS2_N: Ciliary BBSom 87.2 8.6 0.00019 27.3 13.0 102 124-225 12-129 (136)
432 PF15390 DUF4613: Domain of un 86.5 25 0.00053 31.8 12.9 144 112-262 19-186 (671)
433 PF14779 BBS1: Ciliary BBSome 86.5 7.6 0.00016 31.1 8.5 67 111-177 175-255 (257)
434 PRK13616 lipoprotein LpqB; Pro 86.1 27 0.0006 32.0 17.1 131 154-287 399-551 (591)
435 TIGR03548 mutarot_permut cycli 85.9 19 0.00042 30.0 17.2 135 119-253 70-233 (323)
436 COG1520 FOG: WD40-like repeat 85.2 23 0.00049 30.3 19.5 153 121-273 110-279 (370)
437 PF03088 Str_synth: Strictosid 85.2 2.9 6.4E-05 27.4 4.8 44 249-295 32-75 (89)
438 PF06433 Me-amine-dh_H: Methyl 85.0 22 0.00047 29.9 18.4 158 132-293 118-306 (342)
439 PF10168 Nup88: Nuclear pore c 83.8 26 0.00056 33.0 11.9 66 156-222 89-180 (717)
440 KOG2120 SCF ubiquitin ligase, 83.8 0.9 2E-05 37.0 2.3 59 12-70 86-144 (419)
441 PF10647 Gmad1: Lipoprotein Lp 83.6 21 0.00046 28.6 10.9 96 196-294 28-129 (253)
442 PF01011 PQQ: PQQ enzyme repea 83.4 4 8.7E-05 21.6 4.2 29 124-152 2-30 (38)
443 PF01011 PQQ: PQQ enzyme repea 82.5 5.1 0.00011 21.2 4.4 29 246-274 2-30 (38)
444 PF14655 RAB3GAP2_N: Rab3 GTPa 82.4 25 0.00054 30.6 10.6 78 154-231 310-408 (415)
445 COG4590 ABC-type uncharacteriz 82.3 16 0.00035 31.8 9.1 134 157-293 226-374 (733)
446 PRK10115 protease 2; Provision 81.5 48 0.001 31.2 17.1 104 157-261 132-254 (686)
447 PF08728 CRT10: CRT10; InterP 81.3 48 0.001 31.1 12.3 58 204-261 178-245 (717)
448 PF07676 PD40: WD40-like Beta 81.0 4.6 9.9E-05 21.3 3.9 19 278-296 10-28 (39)
449 PF05694 SBP56: 56kDa selenium 80.6 38 0.00083 29.5 17.4 174 124-297 89-332 (461)
450 KOG1898 Splicing factor 3b, su 80.5 49 0.0011 32.2 12.2 105 157-262 939-1048(1205)
451 KOG4460 Nuclear pore complex, 80.3 23 0.00051 31.4 9.5 37 235-271 167-207 (741)
452 COG5276 Uncharacterized conser 80.1 32 0.00069 28.3 18.5 150 113-265 87-244 (370)
453 KOG2280 Vacuolar assembly/sort 79.7 14 0.00029 34.3 8.3 79 213-293 64-144 (829)
454 KOG1897 Damage-specific DNA bi 78.3 68 0.0015 31.1 15.5 128 131-262 806-942 (1096)
455 KOG2377 Uncharacterized conser 78.2 47 0.001 29.1 12.1 146 116-263 26-186 (657)
456 PF05935 Arylsulfotrans: Aryls 77.8 51 0.0011 29.4 15.9 148 124-274 117-313 (477)
457 PF06977 SdiA-regulated: SdiA- 77.5 35 0.00076 27.3 14.2 145 149-293 18-188 (248)
458 PF11715 Nup160: Nucleoporin N 77.5 4.3 9.4E-05 36.7 4.9 26 124-149 232-257 (547)
459 KOG1900 Nuclear pore complex, 75.9 72 0.0016 31.9 12.2 138 125-263 92-273 (1311)
460 PF14781 BBS2_N: Ciliary BBSom 75.3 27 0.00058 24.9 12.1 63 206-270 67-133 (136)
461 COG3823 Glutamine cyclotransfe 74.8 38 0.00082 26.4 8.7 93 171-265 67-161 (262)
462 KOG1898 Splicing factor 3b, su 74.4 91 0.002 30.5 15.8 158 133-294 854-1036(1205)
463 PF14870 PSII_BNR: Photosynthe 73.7 51 0.0011 27.3 20.8 139 154-295 147-294 (302)
464 COG5276 Uncharacterized conser 73.6 50 0.0011 27.2 16.7 134 157-294 92-231 (370)
465 PF02333 Phytase: Phytase; In 73.4 59 0.0013 27.9 13.2 132 160-294 65-225 (381)
466 KOG3926 F-box proteins [Amino 72.8 11 0.00023 30.2 5.2 52 20-71 198-250 (332)
467 PLN00033 photosystem II stabil 72.8 63 0.0014 28.0 15.5 136 157-295 244-389 (398)
468 PF12657 TFIIIC_delta: Transcr 71.8 39 0.00085 25.2 8.9 30 234-263 86-122 (173)
469 KOG2997 F-box protein FBX9 [Ge 71.0 5.5 0.00012 32.7 3.4 50 23-72 106-160 (366)
470 PF13570 PQQ_3: PQQ-like domai 70.3 14 0.00031 19.6 4.3 13 168-180 27-39 (40)
471 PLN02153 epithiospecifier prot 70.0 66 0.0014 27.1 18.8 26 120-145 84-114 (341)
472 PF12341 DUF3639: Protein of u 67.7 13 0.00028 18.1 3.6 25 114-138 3-27 (27)
473 TIGR03032 conserved hypothetic 67.7 34 0.00073 28.4 7.1 71 217-295 189-259 (335)
474 PF03088 Str_synth: Strictosid 66.2 16 0.00035 23.9 4.3 43 126-168 31-73 (89)
475 KOG3616 Selective LIM binding 65.6 19 0.00042 33.4 5.9 75 150-229 13-90 (1636)
476 KOG3522 Predicted guanine nucl 65.5 22 0.00048 33.4 6.3 127 164-292 549-684 (925)
477 KOG4460 Nuclear pore complex, 61.8 90 0.002 28.0 8.9 68 157-224 109-201 (741)
478 PF03022 MRJP: Major royal jel 61.7 90 0.002 25.7 11.5 85 214-298 35-152 (287)
479 COG5290 IkappaB kinase complex 60.4 49 0.0011 31.2 7.4 89 196-287 251-347 (1243)
480 PLN00033 photosystem II stabil 58.6 1.2E+02 0.0027 26.3 16.9 107 152-259 281-396 (398)
481 PF10395 Utp8: Utp8 family; I 58.0 1.6E+02 0.0035 27.5 14.6 157 112-271 129-314 (670)
482 PF12768 Rax2: Cortical protei 57.9 1.1E+02 0.0023 25.2 9.0 73 212-285 15-97 (281)
483 PF14761 HPS3_N: Hermansky-Pud 56.3 95 0.0021 24.2 16.6 46 123-168 29-76 (215)
484 PLN02193 nitrile-specifier pro 55.3 1.5E+02 0.0033 26.3 16.9 141 124-265 231-413 (470)
485 TIGR03547 muta_rot_YjhT mutatr 55.3 1.3E+02 0.0027 25.4 16.4 12 172-183 168-179 (346)
486 TIGR03032 conserved hypothetic 55.1 1.3E+02 0.0027 25.3 12.3 83 205-289 215-317 (335)
487 KOG3522 Predicted guanine nucl 54.9 1.3E+02 0.0029 28.7 9.2 62 206-267 638-702 (925)
488 PF07995 GSDH: Glucose / Sorbo 54.2 1.3E+02 0.0029 25.3 11.2 98 196-295 6-132 (331)
489 PF12768 Rax2: Cortical protei 54.1 1.2E+02 0.0027 24.9 11.9 96 132-227 16-129 (281)
490 PF01731 Arylesterase: Arylest 53.8 59 0.0013 21.1 6.1 51 210-263 33-85 (86)
491 KOG4341 F-box protein containi 53.6 7.5 0.00016 33.4 1.4 49 18-66 66-114 (483)
492 PRK13684 Ycf48-like protein; P 52.8 1.4E+02 0.0031 25.2 19.1 63 232-295 213-278 (334)
493 KOG1916 Nuclear protein, conta 51.7 8.6 0.00019 36.3 1.5 22 246-267 306-328 (1283)
494 KOG1896 mRNA cleavage and poly 51.0 2.8E+02 0.006 28.0 12.7 137 124-261 1048-1212(1366)
495 PF14269 Arylsulfotran_2: Aryl 50.5 1E+02 0.0023 25.5 7.5 66 115-180 146-220 (299)
496 TIGR02608 delta_60_rpt delta-6 50.2 25 0.00055 20.6 2.8 20 278-297 2-21 (55)
497 KOG2377 Uncharacterized conser 49.1 1.9E+02 0.0042 25.6 12.2 130 157-290 28-167 (657)
498 COG4257 Vgb Streptogramin lyas 49.0 1.5E+02 0.0032 24.4 9.7 108 186-295 56-166 (353)
499 PF13449 Phytase-like: Esteras 48.0 1.7E+02 0.0036 24.6 11.4 59 237-296 88-166 (326)
500 PRK13684 Ycf48-like protein; P 47.2 1.7E+02 0.0038 24.6 19.4 140 154-295 175-321 (334)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-40 Score=259.89 Aligned_cols=282 Identities=14% Similarity=0.132 Sum_probs=224.6
Q ss_pred CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhh
Q 022324 10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRL 84 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~ 84 (299)
+++++..++.-+.+.++|++++-..++...+|...|.|++++|++..||+ ++.+|+....+.. ...-...+-
T Consensus 125 p~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~---g~~l~gH~K 201 (480)
T KOG0271|consen 125 PTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI---GRALRGHKK 201 (480)
T ss_pred CCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc---cccccCccc
Confidence 46788889999999999999999999999999999999999999999999 5778874221111 000000122
Q ss_pred hhhhhhhcccc-----ceee-------------cCceeeEEeeccccCeeEEEec-CCEEEEEeCCCcEEEEecCCceeE
Q 022324 85 HLEELAMKHHR-----FALE-------------EGRIDIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCV 145 (299)
Q Consensus 85 ~~~~~~~~~~~-----~~l~-------------~g~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 145 (299)
|+..|.+.|.. +.++ .++..+..+.||+.+|+|+.|- ++++++|+.|++|++|+...|++.
T Consensus 202 ~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~ 281 (480)
T KOG0271|consen 202 WITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLC 281 (480)
T ss_pred ceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHH
Confidence 22233322211 1222 2223356678999999999995 669999999999999999999999
Q ss_pred EEecCCCceeE-EEEe-----------cCCC-------------------------EEE-EEcCCeEEEEecCCcee---
Q 022324 146 EEYSLPNAASL-VDFD-----------FDES-------------------------KIV-GLIGTRICIWRRNGLRS--- 184 (299)
Q Consensus 146 ~~~~~~~~~~~-~~~~-----------~~~~-------------------------~l~-~~~d~~i~v~d~~~~~~--- 184 (299)
..+++|..-+. ++.+ |.++ .++ ++.|.++.+|+......
T Consensus 282 r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~ 361 (480)
T KOG0271|consen 282 RELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT 361 (480)
T ss_pred HhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh
Confidence 99998754333 5544 3333 377 99999999999876543
Q ss_pred eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022324 185 VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 263 (299)
....|...++ -+.++|++.++++++.|+.|++||.++|+.+..|++|-.+|..++|+.| ++|++|+.|.++++||+++
T Consensus 362 rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 362 RMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred hhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 3344444444 3589999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 264 DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 264 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
.++..-+.+|.+ .|.++.|+|||+.+++|+-.
T Consensus 441 kKl~~DLpGh~D--EVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 441 KKLKQDLPGHAD--EVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred eeecccCCCCCc--eEEEEEecCCCceeecCCCc
Confidence 999999999999 99999999999999998753
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.3e-38 Score=247.64 Aligned_cols=257 Identities=14% Similarity=0.151 Sum_probs=227.2
Q ss_pred CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhh--HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhh
Q 022324 10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKS--WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLE 87 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~--~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~ 87 (299)
.+++....+..+-..+.|+.+.+..++.+.+|.+.|.++.|+|. ...+|+ ...|+++|+|
T Consensus 185 ~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat----------------~s~Dgtvklw-- 246 (459)
T KOG0272|consen 185 RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLAT----------------ASADGTVKLW-- 246 (459)
T ss_pred cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceee----------------eccCCceeee--
Confidence 45667777778888999999999889999999999999999998 557776 4578999999
Q ss_pred hhhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCC
Q 022324 88 ELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES 164 (299)
Q Consensus 88 ~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~ 164 (299)
.+..+ .++..+.+|...|..++| |+| +|+|++.|.+-++||+.+++.+...++|+..+. ++|.+||.
T Consensus 247 ~~~~e----------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS 316 (459)
T KOG0272|consen 247 KLSQE----------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS 316 (459)
T ss_pred ccCCC----------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc
Confidence 32332 334455899999999999 777 999999999999999999999988899976665 99999999
Q ss_pred EEE-EEcCCeEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEe
Q 022324 165 KIV-GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241 (299)
Q Consensus 165 ~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 241 (299)
+++ |+.|..-+|||++++.. .+..|...+. .++|+|+|..+++|+.|++++|||++..+.+..+.+|..-|+.+.|
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~ 395 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY 395 (459)
T ss_pred eeeccCccchhheeecccCcEEEEeccccccee-eEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe
Confidence 999 99999999999999874 4566666655 4589999999999999999999999999999999999999999999
Q ss_pred CCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 242 SED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 242 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+|+ .+|+|++.|++++||..++..+++++.+|.+ .|.++..+||+++++++|+-
T Consensus 396 ~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 396 SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFD 451 (459)
T ss_pred cccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccC
Confidence 995 8999999999999999999999999999999 99999999999999999874
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.4e-35 Score=220.77 Aligned_cols=254 Identities=15% Similarity=0.170 Sum_probs=218.5
Q ss_pred hccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee-------
Q 022324 37 SSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID------- 104 (299)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~------- 104 (299)
.+.+|..-|.++.|+++.+.+++ ...+|+.+.-+....+. - --.|+....++|.+++++.|+-+
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip-l---~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP-L---PSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe-c---CceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 35589999999999999999998 35578776555431100 1 12478888999999999887644
Q ss_pred ------------eEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEec-CCCEEE-E
Q 022324 105 ------------IDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDF-DESKIV-G 168 (299)
Q Consensus 105 ------------~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~-~ 168 (299)
.+.+.+|++.+.|+.| +++.|+|++.|.+..+||+++++.+..|.+|...+ .++++| +++.++ |
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 3456899999999999 55599999999999999999999999999997655 499999 888888 9
Q ss_pred EcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC
Q 022324 169 LIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED 244 (299)
Q Consensus 169 ~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~ 244 (299)
+.|+..++||++.+. ..|.+|+..++. ++|.|++..+++|++|++.++||++..+.+..+. .-..+|++++|+..
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINs-v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINS-VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccce-EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 999999999999885 678888888774 5899999999999999999999999988887775 23467999999988
Q ss_pred -CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 245 -QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
++|++|..|.++.+||.-.++.+..+.+|++ .|.++..+|||..|++|||-
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWD 336 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWD 336 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchh
Confidence 9999999999999999999999999999999 99999999999999999985
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-35 Score=233.10 Aligned_cols=190 Identities=15% Similarity=0.192 Sum_probs=173.6
Q ss_pred eEEeeccccCeeEEEe-cC--C-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEe
Q 022324 105 IDQWKAHSVGVDQCRM-KR--G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWR 178 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d 178 (299)
+.+|.||++.|.++.| |. + .++||+.||++++|++++..++..+.+|...+. ++|+|+|++|. ++.|.+-++||
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 6788999999999999 54 3 899999999999999999999999999987666 99999999999 99999999999
Q ss_pred cCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022324 179 RNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (299)
Q Consensus 179 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (299)
+++... ...+|...+. .++|.++|..+++|+.|..-+|||++++.++..+.+|..+|.+++|+|+ ..||||+.|++
T Consensus 290 ~~tk~ElL~QEGHs~~v~-~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 290 LETKSELLLQEGHSKGVF-SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred cccchhhHhhcccccccc-eeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 998863 3455555544 4699999999999999999999999999999999999999999999999 88999999999
Q ss_pred EEEEeCCCCceEEEeeccCCCCcEEEEEccC-CCCeEEeeecc
Q 022324 256 IAISGLSSDQRVATLRSTDCTGHIICLMYPQ-FLHMLFFLCFL 297 (299)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~~ 297 (299)
++|||++..+.+.++..|.+ -|+.++|+| .|.+|+++|.-
T Consensus 369 ~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred EEEeeecccccceecccccc--hhhheEecccCCeEEEEcccC
Confidence 99999999999999999999 899999999 78999999863
No 5
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-34 Score=222.69 Aligned_cols=247 Identities=17% Similarity=0.143 Sum_probs=211.9
Q ss_pred CcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022324 20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE 99 (299)
Q Consensus 20 ~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~ 99 (299)
.+.+|+.|+.+++...-.+.+|.+.|..++|+..|.++++ .+.|-.+++|+.+-.+...
T Consensus 128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~t----------------cSsDl~~~LWd~~~~~~c~----- 186 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLAT----------------CSSDLSAKLWDFDTFFRCI----- 186 (406)
T ss_pred CCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEe----------------cCCccchhheeHHHHHHHH-----
Confidence 4789999999999998888899999999999999999998 4455556777543222222
Q ss_pred cCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEE
Q 022324 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRIC 175 (299)
Q Consensus 100 ~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~ 175 (299)
+.+.+|...|.+++| |.+ ++++++.|.+|+.|++.++.++.++.+|..-+. ++.+.||.+++ ++.|.+++
T Consensus 187 ------ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 187 ------KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLR 260 (406)
T ss_pred ------HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEE
Confidence 233699999999988 666 999999999999999999999999999977665 89999999999 99999999
Q ss_pred EEecCCce--eeeeccCCccceeeeeccC---------------CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022324 176 IWRRNGLR--SVFPSREGTFMKGLCMRYF---------------DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS 238 (299)
Q Consensus 176 v~d~~~~~--~~~~~~~~~~~~~~~~~~~---------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~ 238 (299)
+|-+.+.+ ..+..|+-.+. +++|.|. ++.+.+++.|++|++||+.++.++.++.+|...|..
T Consensus 261 vW~~~t~~~k~~lR~hEh~vE-ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 261 VWVVATKQCKAELREHEHPVE-CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEeccchhhhhhhccccceE-EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 99999883 44555554333 4455443 245899999999999999999999999999999999
Q ss_pred EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
++|+|+ +||+++.+|+++++||+++++++.++..|+. .++++.|+.+-.++++|+.
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~~p~VvTGsV 396 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKTAPYVVTGSV 396 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCCCceEEeccc
Confidence 999999 9999999999999999999999999999988 8999999999999999985
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-35 Score=228.82 Aligned_cols=255 Identities=16% Similarity=0.100 Sum_probs=206.3
Q ss_pred HhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee-----
Q 022324 35 IFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID----- 104 (299)
Q Consensus 35 i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~----- 104 (299)
-.++.+|.+.|.|++|+|++..|++ ++++|+....... +.-...+.|+.++.++|+++.+++|..+
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~----~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~l 183 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL----FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRL 183 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc----eeecCCccEEEEEEECCCcchhhccccCCeEEE
Confidence 3457799999999999999999998 7889987443331 1112236788899999999988877654
Q ss_pred ---------eEEeeccccCeeEEEe-c-----CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE
Q 022324 105 ---------IDQWKAHSVGVDQCRM-K-----RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV 167 (299)
Q Consensus 105 ---------~~~~~~h~~~i~~~~~-~-----~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 167 (299)
.+.+.+|...|++++| | +. +|++++.||+++|||+..++++..+.+|...+. +.|--++ +|+
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liy 262 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIY 262 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEE
Confidence 4667899999999999 2 22 899999999999999999999999999986665 7775444 566
Q ss_pred -EEcCCeEEEEecCCce--eeeeccCCcccee----------eeeccCC-------------------------CeEEEe
Q 022324 168 -GLIGTRICIWRRNGLR--SVFPSREGTFMKG----------LCMRYFD-------------------------PEAVVG 209 (299)
Q Consensus 168 -~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~----------~~~~~~~-------------------------~~l~s~ 209 (299)
++.|++|++|+...+. ..+.+|...++.+ -+|.+.+ ..+++|
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 9999999999998754 3344443322211 1222222 238999
Q ss_pred cCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC
Q 022324 210 CEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 210 ~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 287 (299)
++|.++.+|+... .+++..+.+|...|+.+.|+|| +++|+++.|.+|++||-++|+.+.++++|-. +|+.++|+.|
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~--~VYqvawsaD 420 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA--AVYQVAWSAD 420 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc--eeEEEEeccC
Confidence 9999999999765 4477788899999999999999 9999999999999999999999999999998 9999999999
Q ss_pred CCeEEeeec
Q 022324 288 LHMLFFLCF 296 (299)
Q Consensus 288 g~~l~s~s~ 296 (299)
.++|++||-
T Consensus 421 sRLlVS~Sk 429 (480)
T KOG0271|consen 421 SRLLVSGSK 429 (480)
T ss_pred ccEEEEcCC
Confidence 999999985
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.6e-34 Score=240.68 Aligned_cols=241 Identities=20% Similarity=0.243 Sum_probs=198.7
Q ss_pred ccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc--CCC----CC----CCchhhhhhhhhhhccccceeecCceee
Q 022324 41 FFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH--GFS----NT----SGSSMRLHLEELAMKHHRFALEEGRIDI 105 (299)
Q Consensus 41 h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~--~~~----~~----~d~~~~~~~~~~~~~~~~~~l~~g~~~~ 105 (299)
-...++|..|+.+...+|. .+.+|...-.+.. +.. .+ .|....+. -..+....
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~------------D~~~~~~~ 444 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDML------------DDDSSGTS 444 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhc------------cccCCcee
Confidence 4457899999999998887 3445544221110 000 00 11110000 01222235
Q ss_pred EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCC
Q 022324 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNG 181 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~ 181 (299)
+++.||.++|..+.| |+. +|+++|.|+++++|.+.+..++-.+++|..++. +.|+|-|-+++ ++.|++.++|....
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 668999999999999 666 999999999999999999999999999987776 99999999999 99999999999875
Q ss_pred c--eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022324 182 L--RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258 (299)
Q Consensus 182 ~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i 258 (299)
. ..++.+|.+.+. ++.|+|+..++++|+.|.++++||+.+|..++.|.+|.++|.+++|+|. ++|++|+.||.|.+
T Consensus 525 ~~PlRifaghlsDV~-cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVD-CVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred CCchhhhcccccccc-eEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 4 477777777655 6799999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
||+.+++.+..+.+|.+ .|.++.|+.+|..||+|+.
T Consensus 604 WDl~~~~~v~~l~~Ht~--ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTG--TIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred EEcCCCcchhhhhcccC--ceeEEEEecCCCEEEecCC
Confidence 99999999999999977 9999999999999999985
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=207.73 Aligned_cols=256 Identities=14% Similarity=0.137 Sum_probs=214.2
Q ss_pred CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022324 10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL 89 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (299)
-+|--..+.+++.+|+.|...++.+..++....+-|+.+.+.|+...||.. ....+|+|..
T Consensus 8 d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----------------~~qhvRlyD~-- 68 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA-----------------GNQHVRLYDL-- 68 (311)
T ss_pred CCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc-----------------cCCeeEEEEc--
Confidence 355566778899999999999999999998888899999999999999861 2234566632
Q ss_pred hhccccceeecCce-eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEE
Q 022324 90 AMKHHRFALEEGRI-DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKI 166 (299)
Q Consensus 90 ~~~~~~~~l~~g~~-~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l 166 (299)
.++.. ++.+|.+|++.|+++.| .++ .++||+.||+++|||++...+.+.++...++..+..+|+..-|
T Consensus 69 ---------~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 69 ---------NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTEL 139 (311)
T ss_pred ---------cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceE
Confidence 22222 47788999999999999 455 9999999999999999998888899988888889999988777
Q ss_pred E-EEcCCeEEEEecCCceee---eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc------ceeeeccccCCce
Q 022324 167 V-GLIGTRICIWRRNGLRSV---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR------KCSQIIRMHCAPV 236 (299)
Q Consensus 167 ~-~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~i 236 (299)
+ +..+|.|++||+...... ..... .....+.+.+++.+++.+...|..++|++-.. +++..++.|.+.+
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i 218 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHI 218 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceE
Confidence 7 999999999999987532 22222 22334688999999999999999999998654 3455677899999
Q ss_pred eEEEeCCC-CeEEEEeCCCcEEEEeCCCC-ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 237 TSLSLSED-QLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 237 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
..+.++|| ++||+++.|.+++||+..+. +....+++|.. .++.++||.||+||++|+-
T Consensus 219 l~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r--WvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR--WVWDCAFSADGEYLVTASS 278 (311)
T ss_pred EEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc--eEEeeeeccCccEEEecCC
Confidence 99999999 99999999999999999887 66677888887 9999999999999999984
No 9
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.4e-33 Score=215.12 Aligned_cols=271 Identities=18% Similarity=0.229 Sum_probs=207.2
Q ss_pred cchhccCc----HHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCC---------------CC-----
Q 022324 21 RATIESLN----GDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGF---------------SN----- 76 (299)
Q Consensus 21 ~~~~~~~~----~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~---------------~~----- 76 (299)
.+.+..+| .++.+.|+++++..++..|-.+|+.|..+++...+|+.++.+..+. ..
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r~ 151 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNRP 151 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCCC
Confidence 45677888 7888899999999999999999999999999888888755443210 00
Q ss_pred ------CCCchhhhhhhhh-hhccccceeecCcee-------------------------------------------eE
Q 022324 77 ------TSGSSMRLHLEEL-AMKHHRFALEEGRID-------------------------------------------ID 106 (299)
Q Consensus 77 ------~~d~~~~~~~~~~-~~~~~~~~l~~g~~~-------------------------------------------~~ 106 (299)
+......+|-.-+ .......+|..|... .+
T Consensus 152 ~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~ 231 (499)
T KOG0281|consen 152 NDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLK 231 (499)
T ss_pred CcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCceEEEEecchhhhcccccCceEEeccccHHHHH
Confidence 0111111111100 000111112222111 23
Q ss_pred EeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022324 107 QWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR- 183 (299)
Q Consensus 107 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~- 183 (299)
++.||++.|.|+.|.+..+++|+.|.+|++||+++++++.++-+|...+. +.|+ +.+++ ++.|.++.+||+..+.
T Consensus 232 ~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~ 309 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD 309 (499)
T ss_pred hhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH
Confidence 44799999999999888999999999999999999999999988865554 7775 45666 9999999999998775
Q ss_pred -eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022324 184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (299)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (299)
.......++...+-.+.++++++++++.|.+|++|++.+++.++++.+|...|.|+++ .++++++|++|.+|++||+.
T Consensus 310 it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 310 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred HHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc-cCeEEEecCCCceEEEEecc
Confidence 1222333444445578889999999999999999999999999999999999999987 45799999999999999999
Q ss_pred CCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 263 SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
.|.+++.+++|++ -|.++.| |.+.+++|++-|
T Consensus 389 ~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDG 420 (499)
T KOG0281|consen 389 CGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDG 420 (499)
T ss_pred ccHHHHHHhchHH--hhhheee--cCceeeeccccc
Confidence 9999999999999 8999999 677888887643
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-31 Score=198.90 Aligned_cols=234 Identities=19% Similarity=0.243 Sum_probs=187.6
Q ss_pred hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022324 37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD 116 (299)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~ 116 (299)
.+.+|++.|+.++..+....++. ...-|.++-+| .+... . ..-+..++.|+||...|.
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~---------------sasrDk~ii~W--~L~~d--d---~~~G~~~r~~~GHsH~v~ 67 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILV---------------SASRDKTIIVW--KLTSD--D---IKYGVPVRRLTGHSHFVS 67 (315)
T ss_pred eecCCCceEEEEEeecCCCceEE---------------EcccceEEEEE--EeccC--c---cccCceeeeeeccceEec
Confidence 45589999999988887544442 01133333344 22211 0 111234677899999999
Q ss_pred EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeee-eccC-
Q 022324 117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVF-PSRE- 190 (299)
Q Consensus 117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~-~~~~- 190 (299)
.+.. +++ +.+++++|+++++||+.+++..+.|.+|...+. ++|++|.+.++ ++.|.++++|++.+..... ....
T Consensus 68 dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~ 147 (315)
T KOG0279|consen 68 DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSH 147 (315)
T ss_pred ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCC
Confidence 9988 666 999999999999999999999999999976554 99999999999 9999999999998875322 2221
Q ss_pred CccceeeeeccC--CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceE
Q 022324 191 GTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267 (299)
Q Consensus 191 ~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 267 (299)
..-..+++|+|. ++.+++++.|+++++||+++.+....+.+|.+.++.++++|| .+.++|+.||.+.+||++.++.+
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL 227 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee
Confidence 223346788888 567999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 268 ATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
+++.... .|.+++|+|+...|+++.
T Consensus 228 ysl~a~~---~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 228 YSLEAFD---IVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred EeccCCC---eEeeEEecCCceeEeecc
Confidence 9887665 899999999988887654
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=1.5e-31 Score=201.94 Aligned_cols=247 Identities=19% Similarity=0.208 Sum_probs=194.9
Q ss_pred CCCcchhccCcH-----HHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022324 18 SKPRATIESLNG-----DIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK 92 (299)
Q Consensus 18 ~~~~~~~~~~~~-----~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (299)
...+..+-.|+. +.+..+..+.+|.-.|..+..++++++.++ ...|...|+| ++..+
T Consensus 34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS----------------~swD~~lrlW--Dl~~g 95 (315)
T KOG0279|consen 34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS----------------ASWDGTLRLW--DLATG 95 (315)
T ss_pred cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe----------------ccccceEEEE--EecCC
Confidence 334555555553 444556677899999999999999999987 4578888999 43333
Q ss_pred cccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC---CceeEEEEecC--CCE
Q 022324 93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFD--ESK 165 (299)
Q Consensus 93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~--~~~ 165 (299)
...+.|.||...|.+++| +++ ++++|+.|.+|++|++.. .+..++..+ +-+.++.|+|+ +..
T Consensus 96 ----------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 96 ----------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred ----------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 334555899999999999 556 999999999999999874 455444432 34445999998 566
Q ss_pred EE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC
Q 022324 166 IV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242 (299)
Q Consensus 166 l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 242 (299)
|+ ++.|++|++||+++.+ ..+..|.+... .+.++|++...++|+.||.+.+||++.++.++.+ .+...|.+++|+
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~-t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fs 242 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN-TVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFS 242 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEE-EEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEec
Confidence 77 9999999999999875 45556665555 4689999999999999999999999999998888 678999999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCC-------CcEEEEEccCCCCeEEeee
Q 022324 243 EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT-------GHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 243 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~s~~g~~l~s~s 295 (299)
|+++.+++..+..|+|||+.+++++..++....+ ..-.+++|++||..|++|-
T Consensus 243 pnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 243 PNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred CCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 9977777777888999999999888777543321 1346789999999999874
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=2.2e-31 Score=213.97 Aligned_cols=266 Identities=15% Similarity=0.118 Sum_probs=214.0
Q ss_pred HHHHHHhhccCccchhhHHHhhhhHH-HHhh-----hhhHHHHHHhhh------c-CCCC---CCCchhhhhhhhhhhcc
Q 022324 30 DIICMIFSSLGFFDLVRCSAVCKSWN-AIIN-----RCKLLQLLYCKL------H-GFSN---TSGSSMRLHLEELAMKH 93 (299)
Q Consensus 30 ~~~~~i~~~~~h~~~v~~~~~~~~~~-~l~~-----~~~~w~~~~~~~------~-~~~~---~~d~~~~~~~~~~~~~~ 93 (299)
++....++.+.|...|.+++|+|... .++. +.++|++..... . +... ..+..-.--+.++.++.
T Consensus 166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 44455667778999999999999988 5555 566776643000 0 0000 01111111234667788
Q ss_pred ccceeecCcee------------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCce-eEEE
Q 022324 94 HRFALEEGRID------------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVD 158 (299)
Q Consensus 94 ~~~~l~~g~~~------------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~ 158 (299)
++..|+.|... +.+|..|.++|.++.| ..+ ||++++.|+++.+||..+++..+.+..|+.+ ..+.
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVD 325 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceE
Confidence 88888887765 4566789999999999 344 9999999999999999999999999998877 4588
Q ss_pred EecCCCEEEEEcCCeEEEEecCCc--eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCce
Q 022324 159 FDFDESKIVGLIGTRICIWRRNGL--RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV 236 (299)
Q Consensus 159 ~~~~~~~l~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i 236 (299)
|-.+..+..++.|+.|+|+.+... ...+..|.+.+. ++.|++.+..|+++++|++++||+.........+..|...|
T Consensus 326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~-alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei 404 (524)
T KOG0273|consen 326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVN-ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEI 404 (524)
T ss_pred EecCceEeecCCCceEEEEEecCCCcceeeecccCceE-EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccce
Confidence 877666666999999999988654 577778888766 56888889999999999999999999888889999999999
Q ss_pred eEEEeCCC----------CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 237 TSLSLSED----------QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 237 ~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
..+.|+|. ..+++++.|++|++||+..+.++.++..|.. +|++++|+|+|+|||+|++-+
T Consensus 405 ~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 405 YTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred eeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEEEecCCCcEEEecCCCC
Confidence 99999873 3799999999999999999999999999999 999999999999999999754
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.5e-31 Score=227.08 Aligned_cols=229 Identities=19% Similarity=0.268 Sum_probs=196.4
Q ss_pred hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022324 37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD 116 (299)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~ 116 (299)
.+.+|.+.|..+.|+|+.++|++ ..+|.++|+| ++... ..+-.++||..||+
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlS----------------cSED~svRLW--sl~t~----------s~~V~y~GH~~PVw 497 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLS----------------CSEDSSVRLW--SLDTW----------SCLVIYKGHLAPVW 497 (707)
T ss_pred EeecCCCceeeeeecccccceee----------------ccCCcceeee--ecccc----------eeEEEecCCCccee
Confidence 47799999999999999999998 5588999999 32221 22345689999999
Q ss_pred EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccC
Q 022324 117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSRE 190 (299)
Q Consensus 117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~ 190 (299)
.+.| |-+ |+||+|.|++.++|.....++++.+.+|-..+. +.|+|+..+++ |+.|.+|++||+.++. .+|.+|.
T Consensus 498 dV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~ 577 (707)
T KOG0263|consen 498 DVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK 577 (707)
T ss_pred eEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC
Confidence 9999 777 999999999999999999999999999866665 99999999999 9999999999999875 7788888
Q ss_pred CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc----
Q 022324 191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ---- 265 (299)
Q Consensus 191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~---- 265 (299)
+.+. +++++|.+.+|++|+.|+.|.+||+.+++.+..+.+|.+.|.++.|+.+ ..||+|+.|.+|++||+..-.
T Consensus 578 ~~V~-al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~ 656 (707)
T KOG0263|consen 578 GPVT-ALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLN 656 (707)
T ss_pred CceE-EEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccc
Confidence 8766 5699999999999999999999999999999999999999999999999 999999999999999985321
Q ss_pred --------------------eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 266 --------------------RVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 266 --------------------~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
++.++..... +|.++.|....-.|+.|.+
T Consensus 657 ~~~~~~~~~~~~~~~~~~~~llgs~~tK~t--pv~~l~FtrrNl~L~~g~~ 705 (707)
T KOG0263|consen 657 LGHISTSNSAITQENNASSLLLGSFYTKNT--PVVGLHFTRRNLLLAVGPF 705 (707)
T ss_pred ccccccccccccccCCCCcceeeeeeecCc--eEEEEEEeccceeEEeccc
Confidence 3344444444 8999999987766666654
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=7.1e-32 Score=213.28 Aligned_cols=255 Identities=17% Similarity=0.154 Sum_probs=206.0
Q ss_pred CCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh
Q 022324 11 PPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA 90 (299)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (299)
..+|.-.+...-.+.+|+.....--+=+..|.+.|+++.+++++.++++ ...++.+|.|.. .
T Consensus 107 eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS----------------gD~gG~iKyWqp--n 168 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMIS----------------GDKGGMIKYWQP--N 168 (464)
T ss_pred CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEE----------------cCCCceEEeccc--c
Confidence 3455555666677888887443222223489999999999999999998 446677777722 1
Q ss_pred hccccceeecCceeeEEeeccc-cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEE
Q 022324 91 MKHHRFALEEGRIDIDQWKAHS-VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKI 166 (299)
Q Consensus 91 ~~~~~~~l~~g~~~~~~~~~h~-~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l 166 (299)
+ ..++.+++|. ..|.+++| |++ .+++++.||+|+|||....+....+.+|...+. ++|+|...++
T Consensus 169 m-----------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi 237 (464)
T KOG0284|consen 169 M-----------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI 237 (464)
T ss_pred h-----------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence 1 1223334554 99999999 544 999999999999999999999888999986655 9999999999
Q ss_pred E-EEcCCeEEEEecCCceeee--eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC
Q 022324 167 V-GLIGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243 (299)
Q Consensus 167 ~-~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 243 (299)
+ ++.|..|++||.+++.++. ..|...+. .+.|++++++|++++.|..++++|+++-+.++.+++|...++++.|+|
T Consensus 238 asgskDnlVKlWDprSg~cl~tlh~HKntVl-~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 238 ASGSKDNLVKLWDPRSGSCLATLHGHKNTVL-AVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred EEccCCceeEeecCCCcchhhhhhhccceEE-EEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence 9 9999999999999987554 44444443 357888899999999999999999999899999999999999999999
Q ss_pred C--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 244 D--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 244 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
= .+|.+|+.||.|..|.+...+++..+...+.. .|++++|+|=|.+|++|+-
T Consensus 317 ~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 317 LNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG-EIWSLAYHPLGHILATGSN 370 (464)
T ss_pred ccccceeeccCCCceEEEeccccccccCCCccccc-ceeeeeccccceeEeecCC
Confidence 5 89999999999999999877777777654444 8999999999999999874
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=187.50 Aligned_cols=188 Identities=19% Similarity=0.217 Sum_probs=165.0
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
-++++||.+.|.++.| ++. +|++++.||.+.|||.-|...++.++.+. .+..++|+|.++.++ |+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 4788999999999999 555 99999999999999999888888888775 455699999999999 9999999999998
Q ss_pred Cc--e------eeeeccCCccceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC-C-CeEEE
Q 022324 181 GL--R------SVFPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIIS 249 (299)
Q Consensus 181 ~~--~------~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~ 249 (299)
+. + ..+..|.+-.. |..+. +..|++++.|.+..+||+++++.+..|.+|.+.|.++.++| + +.+++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylS---cC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLS---CCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred cccccccceeeeeecCccceeE---EEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEe
Confidence 55 2 23445554433 33333 55599999999999999999999999999999999999999 6 99999
Q ss_pred EeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 250 GSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 250 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
|+-|+..++||++.+.++++|.+|+. -|++++|.|+|.-+++||--
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghes--DINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHES--DINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred cccccceeeeeccCcceeEeeccccc--ccceEEEccCCCeeeecCCC
Confidence 99999999999999999999999999 89999999999999999854
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.4e-30 Score=219.57 Aligned_cols=253 Identities=18% Similarity=0.206 Sum_probs=211.9
Q ss_pred CCCCCCcchhccCcHHHHH--HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022324 15 KRSSKPRATIESLNGDIIC--MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK 92 (299)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~--~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (299)
......+..+..|..+... .+..+.+|...|+.++|++++.++++ ...|.++|+|..
T Consensus 174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s----------------~s~D~tiriwd~----- 232 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLS----------------GSDDKTLRIWDL----- 232 (456)
T ss_pred EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEE----------------ecCCceEEEeec-----
Confidence 3344467788888886666 56666799999999999999999987 457888899932
Q ss_pred cccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-E
Q 022324 93 HHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-G 168 (299)
Q Consensus 93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~ 168 (299)
......++++++|...|+++.| +.+ ++++|+.|++|++||+.+++++..+..|...+. ++|+++++.++ +
T Consensus 233 ------~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 233 ------KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred ------cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc
Confidence 2333446788999999999999 555 999999999999999999999999999987666 99999999999 8
Q ss_pred EcCCeEEEEecCCcee----eeeccCCc-cceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCce---eEEE
Q 022324 169 LIGTRICIWRRNGLRS----VFPSREGT-FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV---TSLS 240 (299)
Q Consensus 169 ~~d~~i~v~d~~~~~~----~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i---~~~~ 240 (299)
+.|+.|++||+.++.. .+...... ....+++++++.+++++..|+.+++||+..++....+.+|...+ .+..
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence 8899999999998872 33444444 34467899999999999999999999999999999998877643 3344
Q ss_pred eCCC-CeEEEEeCCCcEEEEeCCCCceEEEeecc-CCCCcEEEEEccCCCCeEEeeec
Q 022324 241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRST-DCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 241 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.+++ .++++|+.|+.|++||+.++..+..+.+| .. .+..++++|...+++++++
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~--~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKA--AVSDLSSHPTENLIASSSF 442 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCC--ceeccccCCCcCeeeecCc
Confidence 4566 89999999999999999999999999999 55 8999999999999999874
No 17
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-29 Score=217.39 Aligned_cols=247 Identities=18% Similarity=0.185 Sum_probs=210.1
Q ss_pred CCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccccee
Q 022324 19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFAL 98 (299)
Q Consensus 19 ~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l 98 (299)
..+..|++|+..++..+-.|.+|.+.|+.++|+|+....++ ..+|..+|+|.. ..
T Consensus 28 lHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVS----------------GGDDykIkVWnY--k~------- 82 (1202)
T KOG0292|consen 28 LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVS----------------GGDDYKIKVWNY--KT------- 82 (1202)
T ss_pred ecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEe----------------cCCccEEEEEec--cc-------
Confidence 35778999999999999999999999999999999999987 447888899943 11
Q ss_pred ecCceeeEEeeccccCeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEcCCeE
Q 022324 99 EEGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRI 174 (299)
Q Consensus 99 ~~g~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~d~~i 174 (299)
...+.++.||-+.|..+.|..+ .++++|.|.+|+||+.++.+++..+.+|. .+.+..|+|...+++ ++-|.+|
T Consensus 83 ---rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 83 ---RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred ---ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 1223456899999999999655 99999999999999999999999999886 556699999999999 9999999
Q ss_pred EEEecCCce-------------------------------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc
Q 022324 175 CIWRRNGLR-------------------------------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR 223 (299)
Q Consensus 175 ~v~d~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 223 (299)
+|||+.+-+ .++.+|...++++ +|+|.-+.+++|++|..|++|.+...
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa-AfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA-AFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE-EecCCcceEEecCCcceeeEEEeccc
Confidence 999986411 2334444445544 78888899999999999999998754
Q ss_pred c--eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 224 K--CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 224 ~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+ .+.+..+|...|.++-|+|. +++++.++|++|+|||+...+.+++++...+ ..+.++-+|..+++++|--
T Consensus 239 KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend--RFW~laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 239 KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND--RFWILAAHPELNLFAAGHD 312 (1202)
T ss_pred cceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC--eEEEEEecCCcceeeeecC
Confidence 4 35566799999999999998 8999999999999999999999999998888 8999999999999998743
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=7.9e-29 Score=193.30 Aligned_cols=189 Identities=15% Similarity=0.165 Sum_probs=167.3
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
.+++++|.+-|.|+++ |.+ .+++|+.|++++|||+.+|++..++.+|-..+. +++++-..+++ ++.|+.|+.||+.
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 4556899999999999 555 999999999999999999999999999877776 99999999999 9999999999999
Q ss_pred Cceee--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022324 181 GLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (299)
Q Consensus 181 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (299)
..+.+ +.+|-..+. +++..|.-..|++|+.|..+++||+++...+..+.+|..+|.++.+.|- -.+++|+.|++|+
T Consensus 224 ~nkvIR~YhGHlS~V~-~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVY-CLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhHHHhccccceeE-EEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 88633 334433332 4566777888999999999999999999999999999999999999986 7799999999999
Q ss_pred EEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 258 ISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+||++.|+.+.++..|.. .|++++.+|....+|++|-
T Consensus 303 lWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASP 339 (460)
T ss_pred EeeeccCceeEeeecccc--eeeEEecCCchhhhhccCC
Confidence 999999999999999888 8999999999999998873
No 19
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-28 Score=185.43 Aligned_cols=227 Identities=15% Similarity=0.221 Sum_probs=190.2
Q ss_pred hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022324 37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD 116 (299)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~ 116 (299)
.+.+|+-.++.++++++|.+|.+ ...|.+..+|.. . .+..+-+|.||++.|+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFs----------------caKD~~~~vw~s-----~-------nGerlGty~GHtGavW 56 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFS----------------CAKDSTPTVWYS-----L-------NGERLGTYDGHTGAVW 56 (327)
T ss_pred ccccCccccceEEecCCCcEEEE----------------ecCCCCceEEEe-----c-------CCceeeeecCCCceEE
Confidence 45689999999999999999987 335666667732 2 3334578899999999
Q ss_pred EEEec--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcC------CeEEEEecCCce-----
Q 022324 117 QCRMK--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIG------TRICIWRRNGLR----- 183 (299)
Q Consensus 117 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d------~~i~v~d~~~~~----- 183 (299)
|+... ..+++||+.|.++++||+++|+.+..++.+..+..+.|++++++++.+.| +.|.++|++...
T Consensus 57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s 136 (327)
T KOG0643|consen 57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS 136 (327)
T ss_pred EEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence 99884 33999999999999999999999999999999999999999999885554 379999998432
Q ss_pred ----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc-eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022324 184 ----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (299)
Q Consensus 184 ----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (299)
..+..+..... ...|.+.++.|++|..||.|.+||+++++ .+...+.|...|+.++++++ .++++++.|.+-+
T Consensus 137 ~ep~~kI~t~~skit-~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 137 EEPYLKIPTPDSKIT-SALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred cCceEEecCCcccee-eeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence 33344444443 45799999999999999999999999975 45566789999999999999 9999999999999
Q ss_pred EEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 258 ISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
+||.++-++++++.... ||++.+++|....++.|+
T Consensus 216 l~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGG 250 (327)
T ss_pred eeeccceeeEEEeeecc---cccceecccccceEEecC
Confidence 99999999999998776 899999999888777765
No 20
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=4.1e-29 Score=190.57 Aligned_cols=235 Identities=15% Similarity=0.106 Sum_probs=180.9
Q ss_pred HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecccc
Q 022324 34 MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113 (299)
Q Consensus 34 ~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~ 113 (299)
.+..+.+|.+.|.+++|+|++..+|+ ...|..+-+|.. ++.... .-++++|.+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aS----------------gG~Dr~I~LWnv---~gdceN--------~~~lkgHsg 91 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFAS----------------GGSDRAIVLWNV---YGDCEN--------FWVLKGHSG 91 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEee----------------cCCcceEEEEec---cccccc--------eeeeccccc
Confidence 45567799999999999999999998 234554545521 111122 235589999
Q ss_pred CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE--EEcCCeEEEEecCCceeeeec
Q 022324 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV--GLIGTRICIWRRNGLRSVFPS 188 (299)
Q Consensus 114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~ 188 (299)
+|..+.| .++ .+++++.|.+++.||+++|+.++.++.|...+. ++...-|..++ ++.|+++++||+++...+...
T Consensus 92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 92 AVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred eeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 9999999 555 999999999999999999999999999988877 66555565665 888999999999977544333
Q ss_pred cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC-----
Q 022324 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS----- 262 (299)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~----- 262 (299)
...-....++|...+..+.+|+-|+.|++||++.......+.+|.++|+.+..+|+ .++.+-+.|.++++||++
T Consensus 172 ~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCC
Confidence 22222335677777888999999999999999988888888888888888766666 666666666666666654
Q ss_pred ---------------------------------------------CCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 263 ---------------------------------------------SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 263 ---------------------------------------------~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
....+..+.+|.+ .|.++.|+|...+|.+++.-
T Consensus 252 ~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 252 QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred CceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccC
Confidence 3345666777777 89999999999999998864
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.4e-28 Score=206.75 Aligned_cols=242 Identities=16% Similarity=0.249 Sum_probs=199.9
Q ss_pred ccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee
Q 022324 25 ESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID 104 (299)
Q Consensus 25 ~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~ 104 (299)
-.|....-.=|++..+|...++|++++|+|+++|+ ..+|+.+|+|.. ..+..
T Consensus 333 lVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT----------------G~eDgKVKvWn~------------~SgfC 384 (893)
T KOG0291|consen 333 LVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT----------------GAEDGKVKVWNT------------QSGFC 384 (893)
T ss_pred EEEEeeccceeeeccccccceeeEEECCCCcEEEe----------------ccCCCcEEEEec------------cCceE
Confidence 34555555567888899999999999999999998 558899999943 34456
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE--EEEecCCCEEE-EEcCC-eEEEEe
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL--VDFDFDESKIV-GLIGT-RICIWR 178 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~d~-~i~v~d 178 (299)
+.+|..|++.|+.+.| ..+ .+++.+-||+|+.||+......+++..+.+... ++.+|.|.+++ |+.|. .|++|+
T Consensus 385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence 7788999999999999 444 999999999999999999999999998876654 88888899988 77776 899999
Q ss_pred cCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCC
Q 022324 179 RNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (299)
Q Consensus 179 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (299)
+++++ -++.+|++++. .+++++.+..|++++.|.+|++||+-.. ..+.++ .+...+..++|.|+ +.+++++.||
T Consensus 465 ~qTGqllDiLsGHEgPVs-~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 465 VQTGQLLDILSGHEGPVS-GLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred eecCeeeehhcCCCCcce-eeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecc
Confidence 99996 56788888876 4589999999999999999999998754 344555 45667999999999 9999999999
Q ss_pred cEEEEeCCCCceEEEeeccCC------------------CCcEEEEEccCCCCeEEeeec
Q 022324 255 SIAISGLSSDQRVATLRSTDC------------------TGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 255 ~i~iwd~~~~~~~~~~~~~~~------------------~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.|.+||...+..+.++.+... ..+.+.+++++||.++++|+.
T Consensus 543 qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~ 602 (893)
T KOG0291|consen 543 QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE 602 (893)
T ss_pred eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC
Confidence 999999987665544432111 137899999999999999875
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.1e-29 Score=197.51 Aligned_cols=245 Identities=21% Similarity=0.251 Sum_probs=194.3
Q ss_pred CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc
Q 022324 13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK 92 (299)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 92 (299)
.+.-++..+.+|++|+-....+...+.||.+.|.|+.++.. .+++ ..+|.++++|.. ..+
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viis----------------GSSDsTvrvWDv--~tg 267 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVS----------------GSSDSTVRVWDV--NTG 267 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEe----------------cCCCceEEEEec--cCC
Confidence 34556667899999999999999999999999999999876 5555 558899999943 222
Q ss_pred cccceeecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCcee---EEEecCCCceeE-EEEecCCCEEE-
Q 022324 93 HHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC---VEEYSLPNAASL-VDFDFDESKIV- 167 (299)
Q Consensus 93 ~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~-~~~~~~~~~l~- 167 (299)
..++++-+|.+.|..+.|.+++++|++.|.++.+||+..... .+.+.+|...+. +.| +.++++
T Consensus 268 ----------e~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVs 335 (499)
T KOG0281|consen 268 ----------EPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVS 335 (499)
T ss_pred ----------chhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEE
Confidence 234555799999999999999999999999999999986542 234556765555 776 456888
Q ss_pred EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeE
Q 022324 168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLI 247 (299)
Q Consensus 168 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l 247 (299)
++.|.+|++|++.+...+...+ ++...+.|..+.+..+++|+.|.+|++||+..|.+++.+++|..-|.++.|+. +.+
T Consensus 336 ASgDRTikvW~~st~efvRtl~-gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-krI 413 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRI 413 (499)
T ss_pred ecCCceEEEEeccceeeehhhh-cccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC-cee
Confidence 9999999999999886443322 23333568889999999999999999999999999999999999999999954 579
Q ss_pred EEEeCCCcEEEEeCCCCc---------eEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 248 ISGSSLGSIAISGLSSDQ---------RVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 248 ~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
++|+.||+|++||+.++. |+.++..|.+ .|..+.| |...+++++
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg--RVFrLQF--D~fqIvsss 466 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG--RVFRLQF--DEFQIISSS 466 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccc--eeEEEee--cceEEEecc
Confidence 999999999999998754 3455555666 7888888 444454443
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=9.7e-29 Score=199.43 Aligned_cols=236 Identities=15% Similarity=0.198 Sum_probs=192.0
Q ss_pred HHhhccCccchhhHHHhhh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccc
Q 022324 34 MIFSSLGFFDLVRCSAVCK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHS 112 (299)
Q Consensus 34 ~i~~~~~h~~~v~~~~~~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~ 112 (299)
.+..+-+|+..|+++.|.| .+.++++ ...|+.+++|.. ......+++|.+|.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS----------------~gmD~~vklW~v-----------y~~~~~lrtf~gH~ 258 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLS----------------GGMDGLVKLWNV-----------YDDRRCLRTFKGHR 258 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEe----------------cCCCceEEEEEE-----------ecCcceehhhhcch
Confidence 6778889999999999999 7777776 346777788832 33344468889999
Q ss_pred cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCC-CEEE-EEcCCeEEEEecCCce--eee
Q 022324 113 VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLR--SVF 186 (299)
Q Consensus 113 ~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~d~~i~v~d~~~~~--~~~ 186 (299)
.+|.++.| .++ .++|++.|+.|++||+++|+++..+.......++.|+|++ +.++ |..|+.|+.||+++++ ..+
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred hhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 99999999 455 9999999999999999999999999988888889999998 4444 9999999999999986 334
Q ss_pred eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee--------------------------------------
Q 022324 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-------------------------------------- 228 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------------------------------- 228 (299)
..+.+.+.. +.|-+.+.++++.++|+.++||+.+....+..
T Consensus 339 d~hLg~i~~-i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 339 DRHLGAILD-ITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred Hhhhhheee-eEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence 455555553 46778888999999999999999775322111
Q ss_pred --------cccc--CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC-CeEEeeec
Q 022324 229 --------IRMH--CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL-HMLFFLCF 296 (299)
Q Consensus 229 --------~~~~--~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~s~s~ 296 (299)
+.+| .+.-..+.|+|| .+|++|+.||.+.+||.++-+.+..++.|.. ++..+.|+|.. ..+|+|++
T Consensus 418 ~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Skvat~~w 495 (503)
T KOG0282|consen 418 FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSKVATCGW 495 (503)
T ss_pred cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcceeEeccc
Confidence 1122 234566899999 9999999999999999999999999999977 99999999964 57888888
Q ss_pred ccC
Q 022324 297 LPL 299 (299)
Q Consensus 297 ~~~ 299 (299)
.|+
T Consensus 496 ~G~ 498 (503)
T KOG0282|consen 496 DGL 498 (503)
T ss_pred Cce
Confidence 763
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=182.94 Aligned_cols=232 Identities=13% Similarity=0.158 Sum_probs=192.2
Q ss_pred chhccCcHHHHH--HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022324 22 ATIESLNGDIIC--MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE 99 (299)
Q Consensus 22 ~~~~~~~~~~~~--~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~ 99 (299)
+.+++.+..+.. .+.+|.+|..-|.++.|--+++.+.+ ..+|+++|+| +++.-...+.+
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyT----------------gseDgt~kIW--dlR~~~~qR~~- 121 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYT----------------GSEDGTVKIW--DLRSLSCQRNY- 121 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEe----------------cCCCceEEEE--eccCcccchhc-
Confidence 556666655443 68899999999999999999999998 5689999999 55554444444
Q ss_pred cCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC--CCceeEEEEecCCCEEE-EEcCCeE
Q 022324 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIV-GLIGTRI 174 (299)
Q Consensus 100 ~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~~d~~i 174 (299)
.|.++|+++.. |+. .|++|..+|.|++||+.+..+...+-. ...+.++.+.|||..++ +...|+.
T Consensus 122 ----------~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 122 ----------QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred ----------cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 68899999988 555 999999999999999998877665543 23455599999999999 8888999
Q ss_pred EEEecCCce--------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-
Q 022324 175 CIWRRNGLR--------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED- 244 (299)
Q Consensus 175 ~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~- 244 (299)
++|++-+.+ ..++.|.++...+ .++|++++|++++.|.+++||+.++. +....+.+|...+..++|+.|
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C-~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg 270 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRC-LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG 270 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEE-EECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc
Confidence 999987643 3456677776654 78999999999999999999999987 555677799999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc
Q 022324 245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP 285 (299)
Q Consensus 245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 285 (299)
++|++|+.|+.+++||++.++.++.+.+|.. +..|++..
T Consensus 271 ~YlvTassd~~~rlW~~~~~k~v~qy~gh~K--~~vc~~ln 309 (311)
T KOG0315|consen 271 EYLVTASSDHTARLWDLSAGKEVRQYQGHHK--AAVCVALN 309 (311)
T ss_pred cEEEecCCCCceeecccccCceeeecCCccc--ccEEEEee
Confidence 9999999999999999999999999999998 67776653
No 25
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=6.9e-29 Score=193.64 Aligned_cols=226 Identities=19% Similarity=0.225 Sum_probs=194.6
Q ss_pred ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeE
Q 022324 38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQ 117 (299)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~ 117 (299)
..+|.+.|+|+++.|....+++ ...|.++++| +++.+.....+ .||...|..
T Consensus 147 i~gHlgWVr~vavdP~n~wf~t----------------gs~DrtikIw--Dlatg~Lkltl----------tGhi~~vr~ 198 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFAT----------------GSADRTIKIW--DLATGQLKLTL----------TGHIETVRG 198 (460)
T ss_pred hhhccceEEEEeeCCCceeEEe----------------cCCCceeEEE--EcccCeEEEee----------cchhheeee
Confidence 4479999999999999888887 5688999999 55555554444 899999999
Q ss_pred EEecCC--EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCC
Q 022324 118 CRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREG 191 (299)
Q Consensus 118 ~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~ 191 (299)
+++++. |+++++.|+.|+.||++..+.++.+.+|- .+.+++.+|.-+.|+ ++.|.++++||+++.. ..+.+|.+
T Consensus 199 vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~ 278 (460)
T KOG0285|consen 199 VAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN 278 (460)
T ss_pred eeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCC
Confidence 999655 99999999999999999999999999884 556699999999999 9999999999999875 55677887
Q ss_pred ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022324 192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL 270 (299)
Q Consensus 192 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 270 (299)
.+..+ .+.+.++.+++|+.|++|++||++.++....+..|...+.+++.+|. ..+|+++.|. |+-|++..|+.++.+
T Consensus 279 ~V~~V-~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 279 PVASV-MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL 356 (460)
T ss_pred cceeE-EeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc
Confidence 77654 56677888999999999999999999999999999999999999999 7788888766 999999999999999
Q ss_pred eccCCCCcEEEEEccCCCCeEEeeec
Q 022324 271 RSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 271 ~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.+|.. -|++++...||- +++|+-
T Consensus 357 sgh~~--iintl~~nsD~v-~~~G~d 379 (460)
T KOG0285|consen 357 SGHNA--IINTLSVNSDGV-LVSGGD 379 (460)
T ss_pred ccccc--eeeeeeeccCce-EEEcCC
Confidence 99988 899999988864 555543
No 26
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=210.26 Aligned_cols=262 Identities=13% Similarity=0.152 Sum_probs=195.3
Q ss_pred Hhhcc-CccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc-----------------CCCCC---CCchhhhhhhh
Q 022324 35 IFSSL-GFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH-----------------GFSNT---SGSSMRLHLEE 88 (299)
Q Consensus 35 i~~~~-~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~-----------------~~~~~---~d~~~~~~~~~ 88 (299)
.+... .|.+.|.|++|+++|++||+ .+++|+..-.... ..+.+ +....+--...
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 33445 79999999999999999999 4668877442211 00000 00000000000
Q ss_pred hhh---cccc----ceeecCceeeEEeeccccCeeEEEec-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEe
Q 022324 89 LAM---KHHR----FALEEGRIDIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160 (299)
Q Consensus 89 ~~~---~~~~----~~l~~g~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 160 (299)
.+. ++.. ..+.-...++..|+||.+.|..+.|+ +++|++++.|.+|++|++...+|+..|.+.+.+++++|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 000 0000 00000112267779999999999995 559999999999999999999999999999999999999
Q ss_pred c-CCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-------
Q 022324 161 F-DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM------- 231 (299)
Q Consensus 161 ~-~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~------- 231 (299)
| |.++++ |+-|+.+++|++...+.+...-.......+|+.|+|+..+.|+.+|.+++|+....+....+..
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 9 567777 9999999999999887554433334445679999999999999999999999987666554431
Q ss_pred -cCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 232 -HCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 232 -~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
....|+.++|.|. ..+++.+.|..|+|+|.++.+++..+++......-....|+.||++++++|-
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se 566 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE 566 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec
Confidence 1237999999987 5688888999999999999999999998876556677899999999999984
No 27
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=192.42 Aligned_cols=230 Identities=16% Similarity=0.183 Sum_probs=187.2
Q ss_pred hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022324 37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD 116 (299)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~ 116 (299)
.+.+|...|+.+.+.|++..+++ ..+|.++++|.. ..... .+.++||++.|.
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~----------------as~d~tikv~D~--~tg~~----------e~~LrGHt~sv~ 154 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVS----------------ASEDATIKVFDT--ETGEL----------ERSLRGHTDSVF 154 (406)
T ss_pred hhhccccceeeeeeccCceEEEE----------------ecCCceEEEEEc--cchhh----------hhhhhcccccee
Confidence 33456666666666666666554 226778888843 33333 344599999999
Q ss_pred EEEec-CC-EEEEEeCCCcEEEEecCC-ceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeecc
Q 022324 117 QCRMK-RG-LILTGVGDKVMRLWSLEG-YKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSR 189 (299)
Q Consensus 117 ~~~~~-~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~ 189 (299)
.+.|. .+ +|++++.|-.+++||.++ .+++....+|+..++ +.|-|.+.+++ ++.|.+|+.|++.++- ..+..|
T Consensus 155 di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 155 DISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred EEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence 99993 44 999999999999999986 567777778877776 99999999999 9999999999999985 344455
Q ss_pred CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC----------------CeEEEEeCC
Q 022324 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED----------------QLIISGSSL 253 (299)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~l~~~~~d 253 (299)
..- ..++.++.++..+++++.|.++++|-+.++++...++.|..+|-+++|-|. +++++++.|
T Consensus 235 ~ew-vr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 235 SEW-VRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred hHh-EEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 442 235577777777999999999999999999999999999999999999651 389999999
Q ss_pred CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
++|++||+.++.++.++.+|.+ .|.+++|+|.|+||+++.-.
T Consensus 314 ktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 314 KTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred ceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecC
Confidence 9999999999999999999999 99999999999999998754
No 28
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=2.6e-27 Score=176.67 Aligned_cols=224 Identities=17% Similarity=0.196 Sum_probs=182.7
Q ss_pred CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhh
Q 022324 12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAM 91 (299)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (299)
--|.++...+-+-++|+.-++.++.++ .|.-.|.+++|+.+.++|++ ...+.-+|++..
T Consensus 71 a~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~llt----------------gg~ekllrvfdl---- 129 (334)
T KOG0278|consen 71 ATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLT----------------GGQEKLLRVFDL---- 129 (334)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhc----------------cchHHHhhhhhc----
Confidence 345566678889999999999988776 78899999999999999998 112233355522
Q ss_pred ccccceeecCceeeEEeeccccCeeEEEe--cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEE
Q 022324 92 KHHRFALEEGRIDIDQWKAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL 169 (299)
Q Consensus 92 ~~~~~~l~~g~~~~~~~~~h~~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (299)
.+...+...+.+|++.|..+.| .+..+++.+.|++|++||..+++.++++..+.++.++.++++|++|...
T Consensus 130 -------n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 130 -------NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred -------cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe
Confidence 2222334455799999999988 4558888899999999999999999999999999999999999999988
Q ss_pred cCCeEEEEecCCceee--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec-cccCCceeEEEeCCC-C
Q 022324 170 IGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLSED-Q 245 (299)
Q Consensus 170 ~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~-~ 245 (299)
..+.|.+||..+-..+ +..+.+ +. ..++.|....+++|+.|..++.||..+++.+..+ ++|.++|.|+.|+|+ .
T Consensus 203 ~gssV~Fwdaksf~~lKs~k~P~n-V~-SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE 280 (334)
T KOG0278|consen 203 YGSSVKFWDAKSFGLLKSYKMPCN-VE-SASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE 280 (334)
T ss_pred cCceeEEeccccccceeeccCccc-cc-cccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc
Confidence 8899999999876422 222222 12 2367888888999999999999999999998886 799999999999999 9
Q ss_pred eEEEEeCCCcEEEEeCCCCc
Q 022324 246 LIISGSSLGSIAISGLSSDQ 265 (299)
Q Consensus 246 ~l~~~~~dg~i~iwd~~~~~ 265 (299)
..++|++||+|++|...-++
T Consensus 281 ~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 281 LYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eeeccCCCceEEEEEecCCC
Confidence 99999999999999986554
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.6e-26 Score=195.80 Aligned_cols=187 Identities=20% Similarity=0.280 Sum_probs=164.8
Q ss_pred eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022324 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR- 183 (299)
Q Consensus 109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~- 183 (299)
++|...++++++ ||+ +++||+.||.|+|||...+-|..+|..|...+. +.|+..++.++ ++-||+|+.||+...+
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 799999999999 777 999999999999999999999999998877666 99999999999 9999999999998764
Q ss_pred -eeeeccCCccceeeeeccCCCeEEEecCCCc-EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022324 184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGT-ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (299)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd 260 (299)
..+..+......++++.|.+..+++|+.|.. |.+|++++|+.+..+.+|.+||.+++|+|+ ..|+++|.|.+|++||
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 5566665555556788888998888888765 999999999999999999999999999999 9999999999999999
Q ss_pred CCCC-ceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 261 LSSD-QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 261 ~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+-.. ..+.++...+ .+..++|+|+|+.|+++++-+
T Consensus 507 if~s~~~vEtl~i~s---dvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 507 IFSSSGTVETLEIRS---DVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred eeccCceeeeEeecc---ceeEEEEcCCCCeEEEEEecc
Confidence 8653 3566666555 699999999999999998753
No 30
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.3e-27 Score=179.19 Aligned_cols=233 Identities=16% Similarity=0.142 Sum_probs=192.6
Q ss_pred hhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022324 36 FSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV 115 (299)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i 115 (299)
-++.+|...|..++++-+|..+++ ...|.+.++|.. ........+ .+++|.+.|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~las----------------gs~dktv~v~n~--e~~r~~~~~--------~~~gh~~sv 67 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLAS----------------GSFDKTVSVWNL--ERDRFRKEL--------VYRGHTDSV 67 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeee----------------cccCCceEEEEe--cchhhhhhh--------cccCCCcch
Confidence 466788899999999999999997 345666667622 222111111 237999999
Q ss_pred eEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCC
Q 022324 116 DQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREG 191 (299)
Q Consensus 116 ~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~ 191 (299)
-.+.| + ++++++++.|.+|++||+..++++..+......+.+.|+|++.+++ +..|..|.+.|.++.+........
T Consensus 68 dql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~ 147 (313)
T KOG1407|consen 68 DQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK 147 (313)
T ss_pred hhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc
Confidence 99888 3 3399999999999999999999999999888889999999999998 999999999999877533222222
Q ss_pred ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022324 192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL 270 (299)
Q Consensus 192 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 270 (299)
....-++|+..+..++.....|+|.|....+-++++.++.|.....||.|+|+ +++|+|+.|..+.+||+..--|++.+
T Consensus 148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i 227 (313)
T KOG1407|consen 148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI 227 (313)
T ss_pred ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence 22223578877777776777899999999999999999999999999999999 99999999999999999999999999
Q ss_pred eccCCCCcEEEEEccCCCCeEEeeec
Q 022324 271 RSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 271 ~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
..+.- +|+.++||.||++||+||-
T Consensus 228 sRldw--pVRTlSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 228 SRLDW--PVRTLSFSHDGRMLASASE 251 (313)
T ss_pred ccccC--ceEEEEeccCcceeeccCc
Confidence 99888 9999999999999999985
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=3.6e-27 Score=192.30 Aligned_cols=261 Identities=15% Similarity=0.186 Sum_probs=197.2
Q ss_pred CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022324 10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL 89 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (299)
++|=|.+.++-+.++..+.....+=-.++..|...|+|++++|+|.++|+ ...|+.+-+|.-
T Consensus 158 sRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat----------------~gsDgki~iyDG-- 219 (603)
T KOG0318|consen 158 SRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT----------------AGSDGKIYIYDG-- 219 (603)
T ss_pred CCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE----------------ecCCccEEEEcC--
Confidence 66777888888888888887777666677899999999999999999998 335554444421
Q ss_pred hhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec------------------
Q 022324 90 AMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS------------------ 149 (299)
Q Consensus 90 ~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~------------------ 149 (299)
..++....|.. -.+|++.|.++.| ||. .++|++.|.+++|||+.+.+++.++.
T Consensus 220 ktge~vg~l~~-------~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 220 KTGEKVGELED-------SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred CCccEEEEecC-------CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 11111111111 1489999999999 677 99999999999999998876666552
Q ss_pred -------------------------CCCce-eEEEEecCCCEEE-EEcCCeEEEEecCCce-------------------
Q 022324 150 -------------------------LPNAA-SLVDFDFDESKIV-GLIGTRICIWRRNGLR------------------- 183 (299)
Q Consensus 150 -------------------------~~~~~-~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~------------------- 183 (299)
+|... .++..++++++|+ ++.||.|.-|+..++.
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence 25444 4499999999999 9999999999986410
Q ss_pred --------------------------------------------------------eeeecc-------CCccceeeeec
Q 022324 184 --------------------------------------------------------SVFPSR-------EGTFMKGLCMR 200 (299)
Q Consensus 184 --------------------------------------------------------~~~~~~-------~~~~~~~~~~~ 200 (299)
.++..+ .+-...+++++
T Consensus 373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~ 452 (603)
T KOG0318|consen 373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS 452 (603)
T ss_pred CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence 000000 00111245677
Q ss_pred cCCCeEEEecCCCcEEEEEcCCcceee--eccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce-EEEeeccCCC
Q 022324 201 YFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR-VATLRSTDCT 276 (299)
Q Consensus 201 ~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~ 276 (299)
+++..++.|++|+++++|.+.-.+... ....|..+|++++++|| .+||+|...+.+.+||+.+.+. ...+.-|..
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta- 531 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA- 531 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee-
Confidence 888888999999999999998655332 34489999999999999 9999999999999999998775 334445666
Q ss_pred CcEEEEEccCCCCeEEeeecc
Q 022324 277 GHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 277 ~~i~~~~~s~~g~~l~s~s~~ 297 (299)
.|.+++|+|+.+++|+||+-
T Consensus 532 -kI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 532 -KINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred -eEEEEEeCCCceEEEecccc
Confidence 89999999999999999973
No 32
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=1.3e-28 Score=194.89 Aligned_cols=214 Identities=14% Similarity=0.161 Sum_probs=175.9
Q ss_pred chhhhhhhhhhhccccceeecCcee-------------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee
Q 022324 80 SSMRLHLEELAMKHHRFALEEGRID-------------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC 144 (299)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~g~~~-------------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~ 144 (299)
...|.-+..+++.|+++.|..|... -..+++|..+|.++.| +++ +++||+.+|.|++|+..-. .
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-n 171 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-N 171 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-h
Confidence 4445555577888998777665543 2233789999999999 555 9999999999999997643 3
Q ss_pred EEEec-CC-CceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEE
Q 022324 145 VEEYS-LP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD 219 (299)
Q Consensus 145 ~~~~~-~~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 219 (299)
++.++ .| +.+..++|+|+...++ ++.||+|+|||..... .++.+|.-.+. .++|+|....+++|+.|..|++||
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccceeEEccCCceeEeec
Confidence 44444 44 3444599999988888 9999999999998654 45555544433 569999999999999999999999
Q ss_pred cCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC-CCeEEeeecc
Q 022324 220 MYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF-LHMLFFLCFL 297 (299)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~s~s~~ 297 (299)
.++++++.++..|+..|..+.|+|+ ++|+++|.|..++++|+++.+.+.++++|.. .|+++.|+|- ..+|.+|++-
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCC
Confidence 9999999999999999999999999 9999999999999999999999999999999 9999999994 4566666654
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=8.5e-27 Score=200.99 Aligned_cols=229 Identities=20% Similarity=0.253 Sum_probs=186.2
Q ss_pred cchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-
Q 022324 42 FDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM- 120 (299)
Q Consensus 42 ~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~- 120 (299)
...|.|+.|+++++.+++ ...+..+++|.. ..... ...+.+.+|...|.++.|
T Consensus 159 ~~sv~~~~fs~~g~~l~~----------------~~~~~~i~~~~~--~~~~~--------~~~~~l~~h~~~v~~~~fs 212 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAA----------------ASSDGLIRIWKL--EGIKS--------NLLRELSGHTRGVSDVAFS 212 (456)
T ss_pred cCceEEEEEcCCCCeEEE----------------ccCCCcEEEeec--ccccc--------hhhccccccccceeeeEEC
Confidence 667888899999988876 224555566632 11111 123344799999999999
Q ss_pred cCC-EEEEEeCCCcEEEEec-CCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccc
Q 022324 121 KRG-LILTGVGDKVMRLWSL-EGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFM 194 (299)
Q Consensus 121 ~~~-~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~ 194 (299)
+++ ++++++.|++|++||+ ..+.+++++.+|...+. ++|+|+++.++ |+.|++|++||+++++ ..+..|.+.+.
T Consensus 213 ~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 213 PDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred CCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 676 9999999999999999 56689999998876555 99999998888 9999999999999864 56677777655
Q ss_pred eeeeeccCCCeEEEecCCCcEEEEEcCCcc--eeeeccccCC--ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEE
Q 022324 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCA--PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT 269 (299)
Q Consensus 195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (299)
.+++.+++..+++++.|+.|++||+.++. ++..+..+.. ++++++|+|+ .++++++.|+.+++||++.++++..
T Consensus 293 -~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 293 -GLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred -EEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 56899999999999999999999999998 4566665544 4999999999 9999999999999999999999999
Q ss_pred eeccCCC-CcEEEEEccCCCCeEEeeecc
Q 022324 270 LRSTDCT-GHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 270 ~~~~~~~-~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+.+|... ..+.+...++.++++++|+..
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCC
Confidence 9988873 245566678899999999865
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.4e-27 Score=196.11 Aligned_cols=246 Identities=17% Similarity=0.197 Sum_probs=202.3
Q ss_pred CcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022324 20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE 99 (299)
Q Consensus 20 ~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~ 99 (299)
+.-.+.+|+.++...+.++.--..+|++++|-..-+.+++ ..+|..+|+|. .
T Consensus 33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~----------------GsDD~~IrVfn------------y 84 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVT----------------GSDDMQIRVFN------------Y 84 (794)
T ss_pred ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEE----------------ecCCceEEEEe------------c
Confidence 4667889999998888888777788999888777777765 44777778772 2
Q ss_pred cCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-ceeEEEecCCCc-eeEEEEecCC-CEEE-EEcCCe
Q 022324 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-YKCVEEYSLPNA-ASLVDFDFDE-SKIV-GLIGTR 173 (299)
Q Consensus 100 ~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~-~~~~~~~~~~-~~l~-~~~d~~ 173 (299)
.....+++|.+|.+.|.+++. |.. +++|+|.|-+|++||.+. ..+.++|++|+. +..++|+|.. +.++ ++-|++
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 233447888999999999999 544 999999999999999985 468889999865 4459999954 5677 999999
Q ss_pred EEEEecCCce--eeeeccCCccceeeeeccCC--CeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEE
Q 022324 174 ICIWRRNGLR--SVFPSREGTFMKGLCMRYFD--PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII 248 (299)
Q Consensus 174 i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (299)
|+||.+..+. ..++.|+..+. ++++-+.+ |++++|++|..+++||.++..+++++.+|...|..+.|+|. ..++
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN-~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiii 243 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVN-CVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIII 243 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcc-eEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEE
Confidence 9999998775 56667776655 33444433 57999999999999999999999999999999999999999 9999
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+|++||+++||...+.++..++.-.-+ .+++++-.+.+..++.|.-
T Consensus 244 sgsEDGTvriWhs~Ty~lE~tLn~gle--RvW~I~~~k~~~~i~vG~D 289 (794)
T KOG0276|consen 244 SGSEDGTVRIWNSKTYKLEKTLNYGLE--RVWCIAAHKGDGKIAVGFD 289 (794)
T ss_pred EecCCccEEEecCcceehhhhhhcCCc--eEEEEeecCCCCeEEEecc
Confidence 999999999999998888777776666 8999988887777777653
No 35
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=2e-26 Score=198.74 Aligned_cols=271 Identities=20% Similarity=0.254 Sum_probs=205.1
Q ss_pred CCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhc-CCCCC-------CC----chhh
Q 022324 16 RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH-GFSNT-------SG----SSMR 83 (299)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~-~~~~~-------~d----~~~~ 83 (299)
.....++.+..+|.|....++.+++.++.+.+.++|+.|+.++.....|...+.... ...+. .. ..++
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 179 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWK 179 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhh
Confidence 344567889999999999999999999999999999999999986665554333322 11000 00 0011
Q ss_pred hh-----------------------------hhhhhhccccceeecCce-------------eeEE-eeccccCeeEEEe
Q 022324 84 LH-----------------------------LEELAMKHHRFALEEGRI-------------DIDQ-WKAHSVGVDQCRM 120 (299)
Q Consensus 84 ~~-----------------------------~~~~~~~~~~~~l~~g~~-------------~~~~-~~~h~~~i~~~~~ 120 (299)
.+ +.+..+. ...+..+.. .+.. +.||.+.|+++++
T Consensus 180 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~ 257 (537)
T KOG0274|consen 180 SFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAF 257 (537)
T ss_pred hhhhhhhhccccccccccccceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEE
Confidence 00 0000111 011111111 1344 7899999999999
Q ss_pred c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCcee--eeeccCCccc
Q 022324 121 K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRS--VFPSREGTFM 194 (299)
Q Consensus 121 ~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~ 194 (299)
+ +++|++|+.|.++++||+.+|++...+.+|...+. +.. .+..++ |+.|.+|++|++.++.. .+..| ..
T Consensus 258 ~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h---~~ 332 (537)
T KOG0274|consen 258 PSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGH---TG 332 (537)
T ss_pred ecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccc---cc
Confidence 7 55999999999999999999999999998876665 333 445556 89999999999998753 33334 34
Q ss_pred eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC-ceEEEeecc
Q 022324 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD-QRVATLRST 273 (299)
Q Consensus 195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~ 273 (299)
.+.++..+++.+++|+.|+.|++||+.+++++..+.+|...|.++.+.+...+++|+.|++|++||+++. +++.++.+|
T Consensus 333 ~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h 412 (537)
T KOG0274|consen 333 PVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGH 412 (537)
T ss_pred cEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence 4667777899999999999999999999999999999999999998877578999999999999999999 999999999
Q ss_pred CCCCcEEEEEccCCCCeEEeeecc
Q 022324 274 DCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 274 ~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
.. -+..+.+ .+++|++++.-
T Consensus 413 ~~--~v~~l~~--~~~~Lvs~~aD 432 (537)
T KOG0274|consen 413 TS--LVSSLLL--RDNFLVSSSAD 432 (537)
T ss_pred cc--ccccccc--ccceeEecccc
Confidence 87 6765555 67888888754
No 36
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-27 Score=176.66 Aligned_cols=230 Identities=17% Similarity=0.132 Sum_probs=190.9
Q ss_pred cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022324 39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC 118 (299)
Q Consensus 39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~ 118 (299)
-.|++.|++++|+.+|++.++ ..+|.++|+|.. . .+..+++|.+|...|..+
T Consensus 14 ~~~qgaV~avryN~dGnY~lt----------------cGsdrtvrLWNp------~------rg~liktYsghG~EVlD~ 65 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLT----------------CGSDRTVRLWNP------L------RGALIKTYSGHGHEVLDA 65 (307)
T ss_pred cccccceEEEEEccCCCEEEE----------------cCCCceEEeecc------c------ccceeeeecCCCceeeec
Confidence 368999999999999999987 347788899932 2 233478999999999998
Q ss_pred Ee-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccCCcc
Q 022324 119 RM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREGTF 193 (299)
Q Consensus 119 ~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~~~ 193 (299)
+. .++ .+++|+.|..+.+||+++|+..+.+++|...+. +.|+.+...++ ++.|.++++||.+... ...+......
T Consensus 66 ~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 66 ALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred cccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 77 455 999999999999999999999999999987766 99999999999 9999999999998753 2222222222
Q ss_pred ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeec
Q 022324 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (299)
Q Consensus 194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 272 (299)
..+..+.-.+..+++|+.||+++.||++.|.....+- ..+|+++.|+++ +..+.++-|++|++.|-.+|++++.+++
T Consensus 146 D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG 223 (307)
T KOG0316|consen 146 DGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG 223 (307)
T ss_pred CceeEEEecccEEEeeccCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence 3345666677889999999999999999998876653 568999999999 9999999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 273 TDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 273 ~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
|.+...-..++++.....+++||.-+
T Consensus 224 hkn~eykldc~l~qsdthV~sgSEDG 249 (307)
T KOG0316|consen 224 HKNMEYKLDCCLNQSDTHVFSGSEDG 249 (307)
T ss_pred cccceeeeeeeecccceeEEeccCCc
Confidence 98754556667888888888888654
No 37
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.95 E-value=5.2e-27 Score=188.99 Aligned_cols=245 Identities=14% Similarity=0.078 Sum_probs=197.4
Q ss_pred CCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022324 18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA 97 (299)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (299)
+..+--+++|+..- ..+.++--|.++|.+++|++.+++|++ ..-|++.-+|.. ..+
T Consensus 253 G~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS----------------~~vD~ttilwd~--~~g----- 308 (524)
T KOG0273|consen 253 GSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILS----------------GGVDGTTILWDA--HTG----- 308 (524)
T ss_pred eecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEe----------------ccCCccEEEEec--cCc-----
Confidence 33555667777554 346677789999999999999999997 335566666622 111
Q ss_pred eecCceeeEEeeccccCeeEEEec-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeE
Q 022324 98 LEEGRIDIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRI 174 (299)
Q Consensus 98 l~~g~~~~~~~~~h~~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i 174 (299)
...+.+.-|..+-..+.|. +..+++++.|+.|+++.+....++.++.+|...+. +.|+|.+.+|+ ++.|+++
T Consensus 309 -----~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tl 383 (524)
T KOG0273|consen 309 -----TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTL 383 (524)
T ss_pred -----eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCee
Confidence 1233446777777778894 45999999999999999999999999998876666 99999999999 9999999
Q ss_pred EEEecCCce--eeeeccCCccceeeeeccCCC---------eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC
Q 022324 175 CIWRRNGLR--SVFPSREGTFMKGLCMRYFDP---------EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243 (299)
Q Consensus 175 ~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 243 (299)
++|...... .-+..|...+.. +.|+|.++ .+++++.|++|++||+..+.++..|..|..+|.+++|+|
T Consensus 384 kiWs~~~~~~~~~l~~Hskei~t-~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~ 462 (524)
T KOG0273|consen 384 KIWSMGQSNSVHDLQAHSKEIYT-IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP 462 (524)
T ss_pred EeeecCCCcchhhhhhhccceee-EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC
Confidence 999976553 344455544332 35555533 389999999999999999999999999999999999999
Q ss_pred C-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 244 D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 244 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
+ +++|+|+.||.|.+|+.++++.++.+.+.. .|..++|+.+|.+|.++-
T Consensus 463 ~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~---~Ifel~Wn~~G~kl~~~~ 512 (524)
T KOG0273|consen 463 NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG---GIFELCWNAAGDKLGACA 512 (524)
T ss_pred CCcEEEecCCCCeeEeccccchheeEeecCCC---eEEEEEEcCCCCEEEEEe
Confidence 9 999999999999999999999999997766 699999999998887653
No 38
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=3.3e-26 Score=174.75 Aligned_cols=188 Identities=16% Similarity=0.208 Sum_probs=158.3
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecC-CceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEec
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE-GYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRR 179 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~ 179 (299)
+-.+.+|++.|+.+.| |++ +|+||+.|..|.+|+.. ..+....+.+|+..+- +.|.++++.++ ++.|.+++.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 4455799999999999 777 99999999999999954 4555667788987776 99999999999 999999999999
Q ss_pred CCceeee--eccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022324 180 NGLRSVF--PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (299)
Q Consensus 180 ~~~~~~~--~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (299)
++++.+. +.|.+.++ +++....++. +.+++.|+++++||+++.+.++.+. ...+++++.|... ..+++|+-|+.
T Consensus 120 ~tG~~~rk~k~h~~~vN-s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVN-SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccceeeehhccccceee-ecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 9997543 34444333 2222222333 7899999999999999999988884 4667999999987 88999999999
Q ss_pred EEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 256 IAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
|++||++.++.+.++.+|.+ +|+.+..+|+|.++.+-++
T Consensus 198 ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred eeeeccccCcceEEeecccC--ceeeEEeccCCCccccccc
Confidence 99999999999999999999 9999999999999988775
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.5e-26 Score=167.79 Aligned_cols=188 Identities=18% Similarity=0.178 Sum_probs=161.5
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
.+++..|+++|.++.| -++ |.++++.|.+|++|+...+.+++++.+|...+. ++.+.|+..++ ++.|..+.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 5667899999999999 344 999999999999999999999999999987776 89999999999 9999999999999
Q ss_pred Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC--cceeeeccccCCceeEEEeCCCCeEEEEeCCCcE
Q 022324 181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS--RKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSI 256 (299)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i 256 (299)
+++ ..+..|.+.++ .+.++....-+++|+.|.++++||.++ .++++.+....+.|.++.... ..+++|+.||++
T Consensus 90 TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~DGtv 167 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVDGTV 167 (307)
T ss_pred cCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccCCcE
Confidence 986 45667777665 346666667799999999999999986 467888887788899998854 468999999999
Q ss_pred EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+.||++.|+...-.-++ +|++++|+++|+.++++++.+
T Consensus 168 RtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred EEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccc
Confidence 99999999876655544 899999999999999998754
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.5e-25 Score=166.39 Aligned_cols=189 Identities=14% Similarity=0.190 Sum_probs=160.8
Q ss_pred eEEeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCC---ceeEEEec-CCCcee-EEEEecCCCEEE-EEcCCeEE
Q 022324 105 IDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEG---YKCVEEYS-LPNAAS-LVDFDFDESKIV-GLIGTRIC 175 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~---~~~~~~~~-~~~~~~-~~~~~~~~~~l~-~~~d~~i~ 175 (299)
++.+++|+++++.++| |. + .|+|++.|+.|++|+... ..+...+. +|...+ +++|+|.|++|+ ++.|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 5677999999999999 44 3 899999999999999884 34444443 455444 499999999999 99999999
Q ss_pred EEecCCce----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC---cceeeeccccCCceeEEEeCCC-CeE
Q 022324 176 IWRRNGLR----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---RKCSQIIRMHCAPVTSLSLSED-QLI 247 (299)
Q Consensus 176 v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~-~~l 247 (299)
+|.-.... ..+++|++.+. +++|+.++.+|++++.|+.|-||.+.. .++...++.|.+-|..+.|+|. .+|
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99887553 45677777655 569999999999999999999999874 3567788899999999999998 899
Q ss_pred EEEeCCCcEEEEeCC---CCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 248 ISGSSLGSIAISGLS---SDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 248 ~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+++++|.+|++|+-. .-++++++.+|+. .|.+++|++.|..|++++-
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~rl~s~sd 215 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGSRLVSCSD 215 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCceEEEecC
Confidence 999999999999876 2368999999998 8999999999999999874
No 41
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.4e-27 Score=180.73 Aligned_cols=270 Identities=17% Similarity=0.191 Sum_probs=202.6
Q ss_pred CCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc-CCCCCCCchhhhhhh---
Q 022324 17 SSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH-GFSNTSGSSMRLHLE--- 87 (299)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~-~~~~~~d~~~~~~~~--- 87 (299)
....+.+-.+|..|.+.|+.+|.+|.+.|+|++|++++.++++ +..+|+....-.. .+..+.++.-..-..
T Consensus 165 tASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD 244 (481)
T KOG0300|consen 165 TASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD 244 (481)
T ss_pred ecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc
Confidence 3457888999999999999999999999999999999999988 6779997665544 333332222111100
Q ss_pred ------hhhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EE
Q 022324 88 ------ELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VD 158 (299)
Q Consensus 88 ------~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~ 158 (299)
+-.-..++. +-..++..+++|.+.|.++.| ..+ +++++++|.+..+||+++++.+..+.+|+.... ++
T Consensus 245 e~~~d~d~~~~sD~~---tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs 321 (481)
T KOG0300|consen 245 EHNRDTDSSEKSDGH---TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS 321 (481)
T ss_pred ccccccccccccCCc---eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence 000011111 112236678999999999999 555 999999999999999999999999999988877 88
Q ss_pred EecCCCEEE-EEcCCeEEEEecCCce---eeeeccCCccceeeeeccC-CCeEEEecCCCcEEEEEcCCc-ceeeecccc
Q 022324 159 FDFDESKIV-GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSR-KCSQIIRMH 232 (299)
Q Consensus 159 ~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~ 232 (299)
-+|..++++ ++.|.+.++||++... .+|++|...+. ...+. +..+++|++|.+|++||+++. .++.++. .
T Consensus 322 tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT---S~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-t 397 (481)
T KOG0300|consen 322 THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT---SVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-T 397 (481)
T ss_pred cCCcceEEEEeccCceeEeccchhhcceeeeeccccccee---EEEEecCCceeecCCCceEEEeeeccccCcceeee-c
Confidence 899999988 9999999999999654 45566555443 44444 455999999999999999874 4566664 4
Q ss_pred CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe-----eccCCCCcEEEEEccCCC--CeEEeeec
Q 022324 233 CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL-----RSTDCTGHIICLMYPQFL--HMLFFLCF 296 (299)
Q Consensus 233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~i~~~~~s~~g--~~l~s~s~ 296 (299)
..+++.++++.+ ..++.-..+..|++||++ |..+..+ ++|.. .|+|++|..+- .-|+++++
T Consensus 398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrtsRqgHrR--MV~c~AW~eehp~cnLftcGF 466 (481)
T KOG0300|consen 398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRTSRQGHRR--MVTCCAWLEEHPACNLFTCGF 466 (481)
T ss_pred CCccceeEeecCCceEEeccCCceEEEEecC-CCccccCCcccccccce--eeeeeeccccCcccccccccc
Confidence 678999999988 789999999999999996 5444444 35655 79999997643 34556554
No 42
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1e-26 Score=181.80 Aligned_cols=255 Identities=14% Similarity=0.147 Sum_probs=187.8
Q ss_pred CCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh
Q 022324 11 PPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA 90 (299)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (299)
..+..+.++.++.-.+|+..++..+..+.+|.+.|+|+.|+.++.+||+ ..-++.+++| ...
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLAT----------------GdmsG~v~v~--~~s 136 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLAT----------------GDMSGKVLVF--KVS 136 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEe----------------cCCCccEEEE--Ecc
Confidence 4455567788899999999999988899999999999999999999999 2223333444 222
Q ss_pred hccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE
Q 022324 91 MKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV 167 (299)
Q Consensus 91 ~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 167 (299)
.+.....+ ..--+.|.=+.| |-. .|+.|+.||.+-+|.+.++...+.+.+|+.... -.|.|+|+.++
T Consensus 137 tg~~~~~~----------~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~ 206 (399)
T KOG0296|consen 137 TGGEQWKL----------DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRIL 206 (399)
T ss_pred cCceEEEe----------ecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEE
Confidence 22222111 122223333445 444 888888999999998888777778888766555 78888888888
Q ss_pred -EEcCCeEEEEecCCceeeeecc-----------------------CC--------ccce-eeeecc-------------
Q 022324 168 -GLIGTRICIWRRNGLRSVFPSR-----------------------EG--------TFMK-GLCMRY------------- 201 (299)
Q Consensus 168 -~~~d~~i~v~d~~~~~~~~~~~-----------------------~~--------~~~~-~~~~~~------------- 201 (299)
+..||+|++|++.+.+...... .. .... +.+.++
T Consensus 207 tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 207 TGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred EEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhh
Confidence 8888999999887753211110 00 0000 111111
Q ss_pred -------C---CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEee
Q 022324 202 -------F---DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLR 271 (299)
Q Consensus 202 -------~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (299)
. =+..++|+-||+|.|||+...+....+ .|...|+.+.|-+..+|++++.+|.|+.||.++|+++.++.
T Consensus 287 esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYT 365 (399)
T ss_pred hhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEe
Confidence 1 122478999999999999977665555 78889999999988899999999999999999999999999
Q ss_pred ccCCCCcEEEEEccCCCCeEEeeec
Q 022324 272 STDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 272 ~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+|.. +|.+++++|++++++++|-
T Consensus 366 GH~~--~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 366 GHQM--GILDFALSPQKRLVVTVSD 388 (399)
T ss_pred cCch--heeEEEEcCCCcEEEEecC
Confidence 9999 9999999999999999874
No 43
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2.6e-27 Score=200.09 Aligned_cols=248 Identities=16% Similarity=0.162 Sum_probs=192.6
Q ss_pred chhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecC
Q 022324 22 ATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEG 101 (299)
Q Consensus 22 ~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g 101 (299)
..++..+..+..+. -+.+|.+.|.++.+..++.++++ ...|.++++| .+..+. ..
T Consensus 346 ~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat----------------~sKD~svilW--r~~~~~------~~ 400 (775)
T KOG0319|consen 346 PELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLAT----------------GSKDKSVILW--RLNNNC------SK 400 (775)
T ss_pred CceEEEecCCCceE-EEeCchhheeeeeecccCcEEEE----------------ecCCceEEEE--EecCCc------ch
Confidence 34444433333322 34589999999987788878887 4466777777 221111 01
Q ss_pred ceeeEEeeccccCeeEEEec-CC--EEEEEeCCCcEEEEecCCceeE-----E----EecCCCcee-EEEEecCCCEEE-
Q 022324 102 RIDIDQWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSLEGYKCV-----E----EYSLPNAAS-LVDFDFDESKIV- 167 (299)
Q Consensus 102 ~~~~~~~~~h~~~i~~~~~~-~~--~l~s~~~dg~i~iwd~~~~~~~-----~----~~~~~~~~~-~~~~~~~~~~l~- 167 (299)
...+....+|++.|.++.+. .+ .|+++|.|+++++|++...+.. . +...|+..+ +++++|+.++++
T Consensus 401 ~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 401 SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred hhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 11134447999999999983 33 9999999999999998762211 1 223455444 599999999999
Q ss_pred EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-
Q 022324 168 GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED- 244 (299)
Q Consensus 168 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~- 244 (299)
|+.|++.++|+++... .++.+|....- .+.|++.++.+++++.|++|+||.+.+.+++.+|.+|...|..+.|-.+
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw-~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~ 559 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVW-CVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNG 559 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceE-EEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCC
Confidence 9999999999999553 44555554433 4577777888999999999999999999999999999999999999987
Q ss_pred CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+.|++++.||-|++|++.+++|+.++..|.+ .|++++.+|.+.++++|+-.
T Consensus 560 ~qliS~~adGliKlWnikt~eC~~tlD~H~D--rvWaL~~~~~~~~~~tgg~D 610 (775)
T KOG0319|consen 560 KQLISAGADGLIKLWNIKTNECEMTLDAHND--RVWALSVSPLLDMFVTGGGD 610 (775)
T ss_pred cEEEeccCCCcEEEEeccchhhhhhhhhccc--eeEEEeecCccceeEecCCC
Confidence 8999999999999999999999999999999 99999999999999988743
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.6e-26 Score=171.58 Aligned_cols=207 Identities=14% Similarity=0.129 Sum_probs=166.2
Q ss_pred CCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEEec--CC-EEEEEeCCCcEEEEecCCceeEEEecCCCce
Q 022324 78 SGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA 154 (299)
Q Consensus 78 ~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 154 (299)
.|++.++|.. .....+++.++.|...|.++.|. .+ .++++|+|++||+|+..-.+.+.++.+|...
T Consensus 81 GDGSLrl~d~-----------~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~ 149 (311)
T KOG0277|consen 81 GDGSLRLFDL-----------TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC 149 (311)
T ss_pred cCceEEEecc-----------CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE
Confidence 7788888842 22333577889999999999993 33 7888899999999999999999999999887
Q ss_pred eE-EEEecCC-CEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceee
Q 022324 155 SL-VDFDFDE-SKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQ 227 (299)
Q Consensus 155 ~~-~~~~~~~-~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~ 227 (299)
+. ..|+|.. ++++ ++.|+.+++||++.+. ..+..|...+. +..|+..+++ +++|+.|+.|+.||+++- .++.
T Consensus 150 Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil-~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 150 IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL-CCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE-eecccccCCcEEEecCCCceEEEEehhhccccce
Confidence 76 9999954 5566 9999999999998653 44556654433 2244444444 899999999999999874 4577
Q ss_pred eccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCC-ceEEEeeccCCCCcEEEEEccC-CCCeEEeeeccc
Q 022324 228 IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGHIICLMYPQ-FLHMLFFLCFLP 298 (299)
Q Consensus 228 ~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~~~ 298 (299)
++.+|.-.|..++|+|. .+|++++.|-+++|||...+ .++.+...|.+ .+..+.|++ ++.++|+++|-.
T Consensus 229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe 301 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDE 301 (311)
T ss_pred eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeeccccc
Confidence 88899999999999998 79999999999999999854 45677777777 899999998 677888888754
No 45
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=184.37 Aligned_cols=257 Identities=15% Similarity=0.175 Sum_probs=203.8
Q ss_pred CCCCCCCCCCCcchhccCcHHHHH--HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhh
Q 022324 10 SPPPKKRSSKPRATIESLNGDIIC--MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLE 87 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~ 87 (299)
+.+.+.+.++.+..|.+|+-...+ .+.++.+-.+.++.++|.+++.+++. ...|...++|
T Consensus 185 ~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iA----------------as~d~~~r~W-- 246 (459)
T KOG0288|consen 185 RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIA----------------ASNDKNLRLW-- 246 (459)
T ss_pred cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEe----------------ecCCCceeee--
Confidence 445677788899999999954444 66677788899999999999888775 3366777777
Q ss_pred hhhhccccceeecCceeeEEeeccccCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE
Q 022324 88 ELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK 165 (299)
Q Consensus 88 ~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (299)
.+..... ..++.||++.|+++.|. .. .+++|+.|.+|++||+....|..++-..+.+..++.+ ...
T Consensus 247 nvd~~r~----------~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~ 314 (459)
T KOG0288|consen 247 NVDSLRL----------RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISD 314 (459)
T ss_pred eccchhh----------hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec--cee
Confidence 2222222 34558999999999883 33 6999999999999999999888877766555555554 334
Q ss_pred EE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc----CCceeEEE
Q 022324 166 IV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH----CAPVTSLS 240 (299)
Q Consensus 166 l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~i~~~~ 240 (299)
++ +-.|++|++||.++.........+.....+.+++++..+.+.+.|.++.+.|+++.+....+... ....+.+.
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 55 88899999999998876655555444456788899999999999999999999999888877621 23378899
Q ss_pred eCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 241 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
|+|+ .|+++|+.||.|+||++.++++...+........|++++|+|.|.+|++++-
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC
Confidence 9999 9999999999999999999999988887665325999999999999998864
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=1.4e-25 Score=182.38 Aligned_cols=253 Identities=19% Similarity=0.228 Sum_probs=200.6
Q ss_pred CCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcc
Q 022324 14 KKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH 93 (299)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (299)
....+..+..+..|+.+....+..+..|...+.++.++++++.+++ ...++.+++|.. ...
T Consensus 23 ~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----------------~~~~~~i~i~~~--~~~- 83 (289)
T cd00200 23 LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS----------------GSSDKTIRLWDL--ETG- 83 (289)
T ss_pred EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEE----------------EcCCCeEEEEEc--Ccc-
Confidence 3344445678888988876666677788888888999999877775 223566666622 211
Q ss_pred ccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EE
Q 022324 94 HRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GL 169 (299)
Q Consensus 94 ~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~ 169 (299)
..+..+..|...|.++.| +++ ++++++.|+.+++||+.+++....+..+.. +..++++|++.+++ ++
T Consensus 84 ---------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 84 ---------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred ---------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 234455789999999999 444 778888899999999999998888886654 45599999988888 55
Q ss_pred cCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-Ce
Q 022324 170 IGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL 246 (299)
Q Consensus 170 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 246 (299)
.++.+++||+++.+ ..+..+..... .+++.+++..+++++.++.+++||+++++.+..+..|...+.++.|+|+ .+
T Consensus 155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 233 (289)
T cd00200 155 QDGTIKLWDLRTGKCVATLTGHTGEVN-SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233 (289)
T ss_pred CCCcEEEEEccccccceeEecCccccc-eEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcE
Confidence 59999999998654 33444443333 4678888888999999999999999998888888788889999999998 78
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 247 IISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 247 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+++++.||.|++||+.+++.+..+..+.. .|.+++|+|++++|++++.-
T Consensus 234 ~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 234 LASGSEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred EEEEcCCCcEEEEEcCCceeEEEccccCC--cEEEEEECCCCCEEEEecCC
Confidence 88888899999999999999999987777 89999999999999998754
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=2.4e-25 Score=205.14 Aligned_cols=236 Identities=10% Similarity=0.049 Sum_probs=178.3
Q ss_pred ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhc-cccceeecCceeeEEeeccccCee
Q 022324 38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK-HHRFALEEGRIDIDQWKAHSVGVD 116 (299)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~l~~g~~~~~~~~~h~~~i~ 116 (299)
.+.|.+.|.+++|+++++++++ ...|+.+++|.. ... ...... ......+. +...|.
T Consensus 479 ~~~~~~~V~~i~fs~dg~~lat----------------gg~D~~I~iwd~--~~~~~~~~~~---~~~~~~~~-~~~~v~ 536 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFAT----------------AGVNKKIKIFEC--ESIIKDGRDI---HYPVVELA-SRSKLS 536 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEE----------------EeCCCEEEEEEC--Cccccccccc---ccceEEec-ccCcee
Confidence 4458999999999999999987 336677777732 110 000000 01112222 346788
Q ss_pred EEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEec-CCCEEE-EEcCCeEEEEecCCceeeeeccC
Q 022324 117 QCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDF-DESKIV-GLIGTRICIWRRNGLRSVFPSRE 190 (299)
Q Consensus 117 ~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 190 (299)
++.| + .+ +|++++.||+|++||+.+++.+..+..|...+ .++|+| ++.+|+ ++.|+.|++||+++.........
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 8988 3 23 99999999999999999999999998886554 599996 678888 99999999999987653322211
Q ss_pred Cccceeeee-ccCCCeEEEecCCCcEEEEEcCCcc-eeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCC-----
Q 022324 191 GTFMKGLCM-RYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS----- 263 (299)
Q Consensus 191 ~~~~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~----- 263 (299)
......+.+ .+++..+++|+.|+.|++||+++.+ .+..+.+|...|.++.|.++.+|++++.|++|++||++.
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI 696 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc
Confidence 112223345 3457779999999999999998765 466777899999999998558999999999999999974
Q ss_pred -CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 264 -DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 264 -~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
.+++.++.+|.. .+..++|+|++.+|++|+.-
T Consensus 697 ~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D 729 (793)
T PLN00181 697 NETPLHSFMGHTN--VKNFVGLSVSDGYIATGSET 729 (793)
T ss_pred CCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCC
Confidence 357888888887 89999999999999999853
No 48
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.3e-26 Score=192.62 Aligned_cols=254 Identities=12% Similarity=0.114 Sum_probs=199.8
Q ss_pred HHhhccCccchhhHHHhhhhHHHHhh----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee-----
Q 022324 34 MIFSSLGFFDLVRCSAVCKSWNAIIN----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID----- 104 (299)
Q Consensus 34 ~i~~~~~h~~~v~~~~~~~~~~~l~~----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~----- 104 (299)
.-.++++|+..|+.+++|.+...+++ +..+|+.-..+-.+.+ ... |..+..|-|..+.+..|...
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi--~~~----y~l~~~Fvpgd~~Iv~G~k~Gel~v 438 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI--TCG----YILASKFVPGDRYIVLGTKNGELQV 438 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe--ccc----cEEEEEecCCCceEEEeccCCceEE
Confidence 34577899999999999999999988 4556654211110000 000 22222233333333333221
Q ss_pred --------eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-----ce--------eEEEecCCCceeEEEEec
Q 022324 105 --------IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-----YK--------CVEEYSLPNAASLVDFDF 161 (299)
Q Consensus 105 --------~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~-----~~--------~~~~~~~~~~~~~~~~~~ 161 (299)
+.+.++|.+.|+.+.. |++ .+++||.|.+|++||..- +. ...+++..+.+.++.++|
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 3344799999999998 777 999999999999999641 11 124556778888899999
Q ss_pred CCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022324 162 DESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS 238 (299)
Q Consensus 162 ~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~ 238 (299)
|+++++ +--|.+++||-+.+-+ ..+.+|.-++. ++.++|++..+++|+.|..|++|-++=|.+...+.+|.+.|.+
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~-smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVL-SMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMS 597 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeeccccccee-EEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeE
Confidence 999999 8899999999998876 44556655544 5688999999999999999999999999999999999999999
Q ss_pred EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+.|.|. .++++++.|+.|+-||-..-++++.+.+|.. .|++++.+|+|.+++++|-
T Consensus 598 V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~--ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 598 VQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS--EVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred EEEcccceeEEEecCcceEEeechhhhhhheeeccchh--eeeeeEEcCCCCeEEeccC
Confidence 999999 8999999999999999999999999999998 9999999999999999984
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=2e-26 Score=186.20 Aligned_cols=191 Identities=15% Similarity=0.227 Sum_probs=170.3
Q ss_pred eEEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCC-ceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEe
Q 022324 105 IDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEG-YKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWR 178 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d 178 (299)
+.+|.||+..|+++.| + .+ +|++++.|+.|+||++.. +.++++|.+|...+. ++|+.+|..++ ++.|+.+++||
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 7889999999999987 5 44 999999999999999876 899999999987777 99999999988 99999999999
Q ss_pred cCCceeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022324 179 RNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (299)
+++++....-+.+....++.+.|+++. +++|+.|+.|+.||+++++.++++..|-+.|..+.|-++ +.+++.+.|+++
T Consensus 287 tETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~ 366 (503)
T KOG0282|consen 287 TETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSV 366 (503)
T ss_pred cccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccE
Confidence 999998888888888888899999954 889999999999999999999999999999999999999 999999999999
Q ss_pred EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+||+.+.+-.++.+..+..- ...++..+|+++++++=|+
T Consensus 367 riWe~~~~v~ik~i~~~~~h-smP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMH-TMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred EEEEcCCCccchhhcchhhc-cCcceecCCCCCeehhhcc
Confidence 99999988776655443332 6788999999998887554
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.7e-26 Score=182.26 Aligned_cols=190 Identities=17% Similarity=0.154 Sum_probs=143.4
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC--CceeEEEEecCCCEEE-EEcCCeEEEEec
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~d~~i~v~d~ 179 (299)
.+++.+|..+|..+.| ||+ +|++++.|..+++||+.+|.+...+... ..+.+++|.||+..++ |+.|+.+..||+
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence 5677899999999999 666 9999999999999999999999888754 4556699999999988 999999999999
Q ss_pred CCce-eeeeccCCcccee-----------------------------------------eeeccCCCeEEEecCCCcEEE
Q 022324 180 NGLR-SVFPSREGTFMKG-----------------------------------------LCMRYFDPEAVVGCEDGTARV 217 (299)
Q Consensus 180 ~~~~-~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~l~s~~~d~~i~i 217 (299)
.+.. ...+......... ++++-++.++++--.+..+++
T Consensus 342 Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 342 DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHL 421 (519)
T ss_pred CcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEE
Confidence 7642 1111111111112 234444444445555566777
Q ss_pred EEcCCcceeeeccccCCc--eeEEEeCC-C-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC-CeEE
Q 022324 218 FDMYSRKCSQIIRMHCAP--VTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL-HMLF 292 (299)
Q Consensus 218 wd~~~~~~~~~~~~~~~~--i~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~ 292 (299)
||++..+.++.+.+|... |..-+|-- + .++++|++|+.|+||+..+|+++..+.+|.. .|++++|+|.. .++|
T Consensus 422 WDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 422 WDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFA 499 (519)
T ss_pred eecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhh
Confidence 777766667777666543 33334442 3 8999999999999999999999999999998 99999999965 5667
Q ss_pred eeec
Q 022324 293 FLCF 296 (299)
Q Consensus 293 s~s~ 296 (299)
+||-
T Consensus 500 SasD 503 (519)
T KOG0293|consen 500 SASD 503 (519)
T ss_pred ccCC
Confidence 7664
No 51
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4.8e-25 Score=189.82 Aligned_cols=228 Identities=12% Similarity=0.065 Sum_probs=167.9
Q ss_pred ccCccchhhHHHhhh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022324 38 SLGFFDLVRCSAVCK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD 116 (299)
Q Consensus 38 ~~~h~~~v~~~~~~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~ 116 (299)
+.+|.+.|.+++|+| +++.|++ ...|+++++|. +...... ..-...+..+.+|...|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaS----------------gS~DgtIkIWd--i~~~~~~---~~~~~~l~~L~gH~~~V~ 129 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFT----------------ASEDGTIMGWG--IPEEGLT---QNISDPIVHLQGHTKKVG 129 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEE----------------EeCCCEEEEEe--cCCCccc---cccCcceEEecCCCCcEE
Confidence 568999999999999 7778886 34678888883 3221110 011123567899999999
Q ss_pred EEEe-cC--CEEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EEcCCeEEEEecCCceee--eecc
Q 022324 117 QCRM-KR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSR 189 (299)
Q Consensus 117 ~~~~-~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--~~~~ 189 (299)
++.| ++ ++|++|+.|++|++||+.+++.+..+..|.. +..++|+|++.+|+ ++.|+.|++||++++..+ +..|
T Consensus 130 ~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred EEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 9999 43 3899999999999999999999988887765 44599999999999 999999999999987633 3445
Q ss_pred CCccceeeeeccCCCeEEEec----CCCcEEEEEcCCcc-eeeeccc-cCCceeEEEeCCC-CeEEEEe-CCCcEEEEeC
Q 022324 190 EGTFMKGLCMRYFDPEAVVGC----EDGTARVFDMYSRK-CSQIIRM-HCAPVTSLSLSED-QLIISGS-SLGSIAISGL 261 (299)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~-~~~~~~~-~~~~i~~~~~~~~-~~l~~~~-~dg~i~iwd~ 261 (299)
.+.......|.+.+..+++++ .|+.|++||+++.. .+..... ....+....|+++ ++|++++ .|+.|++||+
T Consensus 210 ~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 210 ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 443333346677777766543 47899999998754 3333322 2344566678888 8888877 5999999999
Q ss_pred CCCceEEEeeccCCCCcEEEEEccCC
Q 022324 262 SSDQRVATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~~~~~s~~ 287 (299)
.+++.+......... ++.+++|.|.
T Consensus 290 ~~~~~~~~~~~~s~~-~~~g~~~~pk 314 (493)
T PTZ00421 290 MNERLTFCSSYSSVE-PHKGLCMMPK 314 (493)
T ss_pred eCCceEEEeeccCCC-CCcceEeccc
Confidence 999887766544322 6778888774
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=6.5e-25 Score=178.41 Aligned_cols=229 Identities=20% Similarity=0.268 Sum_probs=184.3
Q ss_pred hhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022324 36 FSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV 115 (299)
Q Consensus 36 ~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i 115 (299)
..+.+|.+.|.+++++++++.+++ ...++.+++|.. ... .....+..|...+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~----------------~~~~g~i~i~~~--~~~----------~~~~~~~~~~~~i 54 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLAT----------------GSGDGTIKVWDL--ETG----------ELLRTLKGHTGPV 54 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEE----------------eecCcEEEEEEe--eCC----------CcEEEEecCCcce
Confidence 355689999999999999888886 223556666622 211 1344557899999
Q ss_pred eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EEcCCeEEEEecCCcee--eeecc
Q 022324 116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--VFPSR 189 (299)
Q Consensus 116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~ 189 (299)
..+.| +++ ++++++.||.|++||+.+++.+..+..+. .+..+.|++++++++ ++.++.+.+||+.+.+. .+..+
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence 88888 565 99999999999999999988888888776 455599999988888 55599999999986542 33333
Q ss_pred CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE
Q 022324 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA 268 (299)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 268 (299)
..... .+++.+.+..+++++.++.+++||+++++.+..+..|...+.++.|+|+ +.+++++.|+.|++||+++++.+.
T Consensus 135 ~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 135 TDWVN-SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEE-EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceec
Confidence 33333 4577787777888887999999999988888888888889999999999 789999999999999999999998
Q ss_pred EeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 269 TLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 269 ~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
.+..+.. .+.+++|+|++.++++++
T Consensus 214 ~~~~~~~--~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 214 TLRGHEN--GVNSVAFSPDGYLLASGS 238 (289)
T ss_pred chhhcCC--ceEEEEEcCCCcEEEEEc
Confidence 8877777 899999999988888876
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=6.7e-26 Score=178.11 Aligned_cols=256 Identities=13% Similarity=0.099 Sum_probs=191.5
Q ss_pred CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHh-hhhHH--HHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh
Q 022324 12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAV-CKSWN--AIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE 88 (299)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~-~~~~~--~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~ 88 (299)
++-.-.+.++-++++|+.+- ++++.+.+|.+.+..+++ .++.. .+++ ...|.++++|...
T Consensus 115 ~~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~n~~~~~fvs----------------as~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIKNSSSCLFVS----------------ASMDQTLRLWKWN 177 (423)
T ss_pred CceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEecCCccceEEE----------------ecCCceEEEEEec
Confidence 44555566788888888753 567778899988875444 33322 1332 2266677777331
Q ss_pred hhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-------------------------
Q 022324 89 LAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG------------------------- 141 (299)
Q Consensus 89 ~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~------------------------- 141 (299)
+....+. .++.-+||...|-++.. +++ .+++|++|..|++|+..+
T Consensus 178 ----~~~~~~~----~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~ 249 (423)
T KOG0313|consen 178 ----VGENKVK----ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGT 249 (423)
T ss_pred ----Cchhhhh----HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccc
Confidence 1110000 01222599999999987 666 999999999999999321
Q ss_pred ceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEE
Q 022324 142 YKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD 219 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd 219 (299)
..++-++.+|...+. +.|++ ...++ ++.|++|+.||+.++........+.....+...+....|++|+.|..+++||
T Consensus 250 r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 250 RTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred cCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecC
Confidence 235566778877776 88887 44555 9999999999999987665555555555667777778899999999999999
Q ss_pred cCCcc---eeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022324 220 MYSRK---CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 220 ~~~~~---~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s 293 (299)
.+++. ..+++.+|...|.++.|+|. .+|++|+.|+++++||+|+.+ ++..+.+|.+ .|.++.|. ++.++++
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~-~~~~IvS 405 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWN-EGGLIVS 405 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEEEecc-CCceEEe
Confidence 99753 35677899999999999997 689999999999999999987 9999999988 99999997 5567888
Q ss_pred eec
Q 022324 294 LCF 296 (299)
Q Consensus 294 ~s~ 296 (299)
|+-
T Consensus 406 GGa 408 (423)
T KOG0313|consen 406 GGA 408 (423)
T ss_pred ccC
Confidence 763
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=7.2e-25 Score=185.43 Aligned_cols=192 Identities=18% Similarity=0.163 Sum_probs=162.8
Q ss_pred eEEeeccccCeeEEE-ecCC-EEEEEeCCCcEEEEecCCce----eEEEecCCCceeE-EEEecCC-CEEE-EEcCCeEE
Q 022324 105 IDQWKAHSVGVDQCR-MKRG-LILTGVGDKVMRLWSLEGYK----CVEEYSLPNAASL-VDFDFDE-SKIV-GLIGTRIC 175 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~-~~~~-~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~-~~~~~~~-~~l~-~~~d~~i~ 175 (299)
.+.+.||++.|.++. +..+ +|+||+.|.++++|.++++. ++....+|...+. ++++..+ ..++ ++.|.+++
T Consensus 358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 567799999999997 5666 99999999999999885433 4445567766554 8886655 4566 99999999
Q ss_pred EEecCCce-----------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC
Q 022324 176 IWRRNGLR-----------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244 (299)
Q Consensus 176 v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 244 (299)
+|++...+ .....|...++ +++++|++..+++|++|++.++|++++.....++.+|...|.++.|+|.
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN-~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~ 516 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDIN-CVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKN 516 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhccccc-ceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccc
Confidence 99998722 12234455555 5699999999999999999999999999999999999999999999998
Q ss_pred -CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecccC
Q 022324 245 -QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLPL 299 (299)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~~ 299 (299)
+.++|+|.|++|+||.+.+..|++++.+|.. .|..+.|-.+|+.|++|+-.|+
T Consensus 517 dq~laT~SgD~TvKIW~is~fSClkT~eGH~~--aVlra~F~~~~~qliS~~adGl 570 (775)
T KOG0319|consen 517 DQLLATCSGDKTVKIWSISTFSCLKTFEGHTS--AVLRASFIRNGKQLISAGADGL 570 (775)
T ss_pred cceeEeccCCceEEEEEeccceeeeeecCccc--eeEeeeeeeCCcEEEeccCCCc
Confidence 9999999999999999999999999999998 9999999999999999987654
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.93 E-value=5.4e-25 Score=202.89 Aligned_cols=253 Identities=12% Similarity=0.073 Sum_probs=187.1
Q ss_pred CCCCCCCCcchhccCcHHHHH--------HHhhccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhh
Q 022324 13 PKKRSSKPRATIESLNGDIIC--------MIFSSLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMR 83 (299)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~--------~i~~~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~ 83 (299)
...+.++.+..+++|+.+... .+.. +.+...+.+++|++. +.++++ ...|+.++
T Consensus 496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~las----------------~~~Dg~v~ 558 (793)
T PLN00181 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVE-LASRSKLSGICWNSYIKSQVAS----------------SNFEGVVQ 558 (793)
T ss_pred CEEEEEeCCCEEEEEECCcccccccccccceEE-ecccCceeeEEeccCCCCEEEE----------------EeCCCeEE
Confidence 344566678889999865321 0111 223455667777654 455655 23678888
Q ss_pred hhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEe
Q 022324 84 LHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160 (299)
Q Consensus 84 ~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 160 (299)
+|.. .. ...+..+.+|.+.|+++.| + ++ +|++|+.||+|++||+.+++.+..+..+..+..+.|.
T Consensus 559 lWd~--~~----------~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~ 626 (793)
T PLN00181 559 VWDV--AR----------SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFP 626 (793)
T ss_pred EEEC--CC----------CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEe
Confidence 8832 21 2335566899999999999 3 44 9999999999999999999999888877777778885
Q ss_pred -cCCCEEE-EEcCCeEEEEecCCce---eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc------ceeeec
Q 022324 161 -FDESKIV-GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR------KCSQII 229 (299)
Q Consensus 161 -~~~~~l~-~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~ 229 (299)
+++..++ |+.|+.|++||+++.. ..+..|...+. .+.|. ++..+++++.|+.|++||++.+ +.+..+
T Consensus 627 ~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~-~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~ 704 (793)
T PLN00181 627 SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS-YVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF 704 (793)
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEE-EEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE
Confidence 5688888 9999999999998754 23344444433 33453 5667999999999999999743 567788
Q ss_pred cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEee-------------ccCCCCcEEEEEccCCCCeEEeee
Q 022324 230 RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLR-------------STDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
.+|...+..++|+|+ .+|++|+.|+.|++|+......+..+. .+.. .|.+++|+|++.+|++|+
T Consensus 705 ~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 705 MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ--FISSVCWRGQSSTLVAAN 782 (793)
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc--EEEEEEEcCCCCeEEEec
Confidence 899999999999998 999999999999999987665443321 1222 699999999999999998
Q ss_pred ccc
Q 022324 296 FLP 298 (299)
Q Consensus 296 ~~~ 298 (299)
..+
T Consensus 783 ~dG 785 (793)
T PLN00181 783 STG 785 (793)
T ss_pred CCC
Confidence 644
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=1.1e-25 Score=176.94 Aligned_cols=240 Identities=17% Similarity=0.108 Sum_probs=181.7
Q ss_pred CCCCCCCcchhccCcHHHHH----HHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhh
Q 022324 14 KKRSSKPRATIESLNGDIIC----MIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRL 84 (299)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~----~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~ 84 (299)
+-...+.++++.+|..+... .+....||...|.++.+.+++..+++ ...+|.. ........ ++...|-
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~-~~~~~~~~--E~~s~~r 237 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSV-ETDEEDEL--ESSSNRR 237 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeeccc-CCCccccc--cccchhh
Confidence 34456789999999865443 34445599999999999999999997 3444530 00000000 0000000
Q ss_pred hhhhhhhccccceeecCceeeEEeeccccCeeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCC
Q 022324 85 HLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE 163 (299)
Q Consensus 85 ~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (299)
- .............++.++.||+++|.++.|++. .++++++|.+|+.||+.++.++.++.......+++.+|..
T Consensus 238 r-----k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~ 312 (423)
T KOG0313|consen 238 R-----KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLS 312 (423)
T ss_pred h-----hhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeeccccc
Confidence 0 000000111223347888999999999999655 9999999999999999999999999998888889999999
Q ss_pred CEEE-EEcCCeEEEEecCCce-----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc-eeeeccccCCc
Q 022324 164 SKIV-GLIGTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK-CSQIIRMHCAP 235 (299)
Q Consensus 164 ~~l~-~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~ 235 (299)
++|+ |+.|..+++||.+++. ..+.+|.+-+. .+.|+|.+.+ |++|+.|+++++||+++.+ ++..+.+|.+.
T Consensus 313 ~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs-svkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 313 KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS-SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh-heecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence 9999 9999999999999764 34455555444 4578888887 8999999999999999877 89999999999
Q ss_pred eeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022324 236 VTSLSLSEDQLIISGSSLGSIAISGLS 262 (299)
Q Consensus 236 i~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (299)
|.++.|+....+++|+.|.+|+|+.-.
T Consensus 392 vl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccCCceEEeccCcceEEEeccc
Confidence 999999888899999999999998753
No 57
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=8.7e-25 Score=189.33 Aligned_cols=250 Identities=10% Similarity=0.066 Sum_probs=175.6
Q ss_pred CCCcchhccCcHHHHHHHhhccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccc
Q 022324 18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRF 96 (299)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (299)
++....+.+|+......+..+.+|.+.|.+++|+|+ ++.|++ ...|+.+++| ++.....
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLAS----------------gS~DgtIrIW--Di~t~~~-- 109 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILAS----------------GSEDLTIRVW--EIPHNDE-- 109 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEE----------------EeCCCeEEEE--ECCCCCc--
Confidence 455566777776555566677899999999999997 678876 3467888888 3322110
Q ss_pred eeecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC
Q 022324 97 ALEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT 172 (299)
Q Consensus 97 ~l~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~ 172 (299)
....-...+..+.+|...|.++.| |++ +|++++.|++|++||+.+++.+..+..+..+.+++|+++|.+|+ ++.|+
T Consensus 110 ~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~ 189 (568)
T PTZ00420 110 SVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGK 189 (568)
T ss_pred cccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCC
Confidence 000001234567899999999999 545 56899999999999999998887777666677799999999999 88899
Q ss_pred eEEEEecCCcee--eeeccCCcccee----eeeccCCCeEEEecCCC----cEEEEEcCC-cceeeecc--ccCCceeEE
Q 022324 173 RICIWRRNGLRS--VFPSREGTFMKG----LCMRYFDPEAVVGCEDG----TARVFDMYS-RKCSQIIR--MHCAPVTSL 239 (299)
Q Consensus 173 ~i~v~d~~~~~~--~~~~~~~~~~~~----~~~~~~~~~l~s~~~d~----~i~iwd~~~-~~~~~~~~--~~~~~i~~~ 239 (299)
.|++||++++.. .+..|.+..... ..+++++.++++++.|+ .|++||+++ ++++..+. .+.+.+...
T Consensus 190 ~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~ 269 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPH 269 (568)
T ss_pred EEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEe
Confidence 999999998753 345565543211 22346777888877664 799999995 55555443 223333333
Q ss_pred EeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC
Q 022324 240 SLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL 288 (299)
Q Consensus 240 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g 288 (299)
...++ .++++|+.|+.|++|++..+. +..+.......++.+++|.|..
T Consensus 270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 270 YDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 33344 788999999999999998764 3333332222288999999964
No 58
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=3.2e-23 Score=178.63 Aligned_cols=188 Identities=9% Similarity=0.080 Sum_probs=146.6
Q ss_pred EEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCc-------eeEEEecCCCceeE-EEEecCC-CEEE-EEcCC
Q 022324 106 DQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGY-------KCVEEYSLPNAASL-VDFDFDE-SKIV-GLIGT 172 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~-~~~~~~~-~~l~-~~~d~ 172 (299)
..+.+|.+.|+++.| | ++ +|++|+.|++|++||+.++ +++..+.+|...+. ++|+|++ ++|+ ++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 346899999999999 5 44 9999999999999999765 34667777765554 9999986 5777 89999
Q ss_pred eEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCc-eeEEEeCCC-CeEE
Q 022324 173 RICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP-VTSLSLSED-QLII 248 (299)
Q Consensus 173 ~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~-~~l~ 248 (299)
.|++||++++.. .+..+...+. .++|++++..+++++.|+.|++||+++++.+..+..|.+. +..+.|.++ ..++
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 999999998753 3444554443 4689999999999999999999999999998888888764 346778887 6666
Q ss_pred EEe----CCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 249 SGS----SLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 249 ~~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
+++ .|+.|++||+++.. ++.....+... .+....|++++.+|++|+
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~-~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS-ALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCC-ceEEEEEcCCCCEEEEEE
Confidence 654 47999999998754 44444433332 566778999999998876
No 59
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=7.5e-25 Score=192.58 Aligned_cols=270 Identities=11% Similarity=0.075 Sum_probs=203.6
Q ss_pred CCCCCCCCCC--CcchhccCcHH------------HHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCC
Q 022324 10 SPPPKKRSSK--PRATIESLNGD------------IICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS 75 (299)
Q Consensus 10 ~~~~~~~~~~--~~~~~~~~~~~------------~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~ 75 (299)
++..|-+.++ .+..+.+|+.+ ..++++.+..|.+.|+|+.|+++|.++|+
T Consensus 23 pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs---------------- 86 (942)
T KOG0973|consen 23 PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS---------------- 86 (942)
T ss_pred CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee----------------
Confidence 3445555665 55555556543 33456677789999999999999999998
Q ss_pred CCCCchhhhhhhhhhhccccceeec-Cc-------eeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE
Q 022324 76 NTSGSSMRLHLEELAMKHHRFALEE-GR-------IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV 145 (299)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~~~~~l~~-g~-------~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~ 145 (299)
..+|.-+.+|-+.- .+.+..+-. |+ ..+.++.+|.+.|..+.| |++ +|++++.|++|.+||..+.+.+
T Consensus 87 GSDD~~v~iW~~~~--~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 87 GSDDRLVMIWERAE--IGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL 164 (942)
T ss_pred ccCcceEEEeeecc--cCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceee
Confidence 33444444553321 111111111 11 127888999999999999 666 9999999999999999999999
Q ss_pred EEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCC-----ccceeeeeccCCCeEEEecC----C
Q 022324 146 EEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREG-----TFMKGLCMRYFDPEAVVGCE----D 212 (299)
Q Consensus 146 ~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~l~s~~~----d 212 (299)
..+++|...+. +.|+|-|++++ -+.|++|++|++.+-. +....+.. .....+.|+|++++|++... -
T Consensus 165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 99999987776 99999999999 8999999999976532 22222221 12224689999999887532 3
Q ss_pred CcEEEEEcCCcceeeeccccCCceeEEEeCCC------C------------eEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022324 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED------Q------------LIISGSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~------~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
..+.|.+..+.+.-..+.+|..++.++.|+|. + .+|+|+.|++|.||.....+++.....-.
T Consensus 245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 45889998888888888899999999999971 3 68899999999999998888776665444
Q ss_pred CCCcEEEEEccCCCCeEEeeeccc
Q 022324 275 CTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 275 ~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
.. .|..|+|+|||..|+++|+-+
T Consensus 325 ~~-SI~DmsWspdG~~LfacS~DG 347 (942)
T KOG0973|consen 325 NK-SIVDMSWSPDGFSLFACSLDG 347 (942)
T ss_pred cC-ceeeeeEcCCCCeEEEEecCC
Confidence 43 899999999999999999865
No 60
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=4.7e-25 Score=164.67 Aligned_cols=237 Identities=13% Similarity=0.075 Sum_probs=187.9
Q ss_pred HHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEe
Q 022324 29 GDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQW 108 (299)
Q Consensus 29 ~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~ 108 (299)
.+++.-|-.|++|.+.|.....+++....|+ ...|.+.|+|.. ..+.....+
T Consensus 46 g~tgdwigtfeghkgavw~~~l~~na~~aas----------------aaadftakvw~a--~tgdelhsf---------- 97 (334)
T KOG0278|consen 46 GDTGDWIGTFEGHKGAVWSATLNKNATRAAS----------------AAADFTAKVWDA--VTGDELHSF---------- 97 (334)
T ss_pred CCCCCcEEeeeccCcceeeeecCchhhhhhh----------------hcccchhhhhhh--hhhhhhhhh----------
Confidence 4556677889999999999999999888887 446777788832 333322222
Q ss_pred eccccCeeEEEec-CC-EEEEEeCCCcEEEEecCCce-eEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce
Q 022324 109 KAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYK-CVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR 183 (299)
Q Consensus 109 ~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~ 183 (299)
.|..-|.+++|. +. +|++|+.+..++|||++..+ +...+.+|...+. +.|....+.++ ++.|++|++||.+++.
T Consensus 98 -~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt 176 (334)
T KOG0278|consen 98 -EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT 176 (334)
T ss_pred -hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence 688899999994 33 99999999999999998654 4556777766665 88888777777 7889999999999987
Q ss_pred eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022324 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~ 262 (299)
.+...........+-+++++.++. -...+.|.+||..+...+..++. ...|.+..++|+ .++++|+.|..++.||..
T Consensus 177 ~v~sL~~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 177 EVQSLEFNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred EEEEEecCCCCcceeeccCCCEEE-EecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEecc
Confidence 544433333333456777776654 44567899999999999988864 456999999999 899999999999999999
Q ss_pred CCceEEEe-eccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 263 SDQRVATL-RSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 263 ~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+++.+..+ ++|.+ +|.|+.|+|+|...++||.-+
T Consensus 255 TgeEi~~~nkgh~g--pVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 255 TGEEIGSYNKGHFG--PVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred CCceeeecccCCCC--ceEEEEECCCCceeeccCCCc
Confidence 99998886 88888 999999999999999998643
No 61
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-24 Score=160.78 Aligned_cols=226 Identities=15% Similarity=0.140 Sum_probs=175.7
Q ss_pred HHhhccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceee-EEe-ec
Q 022324 34 MIFSSLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDI-DQW-KA 110 (299)
Q Consensus 34 ~i~~~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~-~~ 110 (299)
.++.+.+|.+.+..++++|- |..+|+ ...|..+|+|.. .- ++. ... .++ .+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAs----------------cg~Dk~vriw~~--~~-~~s-------~~ck~vld~~ 59 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILAS----------------CGTDKAVRIWST--SS-GDS-------WTCKTVLDDG 59 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEe----------------ecCCceEEEEec--CC-CCc-------EEEEEecccc
Confidence 45566789998888999998 887887 446777888832 11 111 111 111 57
Q ss_pred cccCeeEEEe-cCC-EEEEEeCCCcEEEEecC--CceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022324 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR- 183 (299)
Q Consensus 111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~- 183 (299)
|+..|..++| |.+ +|++||.|.++.||.-. +.+++.++++|+..+. ++|+++|++|+ ++.|++|.+|.+....
T Consensus 60 hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE 139 (312)
T KOG0645|consen 60 HKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE 139 (312)
T ss_pred chheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence 9999999999 666 99999999999999866 3478899999976665 99999999999 9999999999998543
Q ss_pred ----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcC---CcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022324 184 ----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (299)
Q Consensus 184 ----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (299)
.+++.|...+. .+.|+|....|+++++|++|++|+-. ...+.+++.+|...|.+++|++. ..|++++.|++
T Consensus 140 fec~aVL~~HtqDVK-~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t 218 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVK-HVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT 218 (312)
T ss_pred EEEEeeecccccccc-EEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc
Confidence 45566665544 45899999999999999999999866 35688999999999999999998 89999999999
Q ss_pred EEEEeCCCCceEEEeec-cCCCCcEEEEEccCCCCeEEeee
Q 022324 256 IAISGLSSDQRVATLRS-TDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 256 i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
++||-..+. +.. |.. +++.++|. + ..+++++
T Consensus 219 v~Iw~~~~~-----~~~~~sr--~~Y~v~W~-~-~~IaS~g 250 (312)
T KOG0645|consen 219 VSIWRLYTD-----LSGMHSR--ALYDVPWD-N-GVIASGG 250 (312)
T ss_pred eEeeeeccC-----cchhccc--ceEeeeec-c-cceEecc
Confidence 999997622 222 223 78888887 3 3455543
No 62
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.92 E-value=1.4e-24 Score=177.34 Aligned_cols=266 Identities=12% Similarity=0.079 Sum_probs=202.5
Q ss_pred cCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc-CCCCCCCchhhhhhhhhhhccccceee
Q 022324 26 SLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH-GFSNTSGSSMRLHLEELAMKHHRFALE 99 (299)
Q Consensus 26 ~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~l~ 99 (299)
+.+.+.+.....|.+|...++..+++|.|.++|+ ++++|+.....-. +.... ...-+ +.++.++.+++.++
T Consensus 43 ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~-v~aG~--I~Di~Wd~ds~RI~ 119 (603)
T KOG0318|consen 43 IRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQ-VLAGP--IKDISWDFDSKRIA 119 (603)
T ss_pred EEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeee-ecccc--cccceeCCCCcEEE
Confidence 3344455567788899999999999999999999 6889987332111 11110 00001 12444445443332
Q ss_pred -cCc--------------eeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEe
Q 022324 100 -EGR--------------IDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFD 160 (299)
Q Consensus 100 -~g~--------------~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~ 160 (299)
.|. ..+-.+.||...|+++.| |.. .++||+.|++|.+|+=...+...+++.|..-+ ++.++
T Consensus 120 avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys 199 (603)
T KOG0318|consen 120 AVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS 199 (603)
T ss_pred EEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC
Confidence 222 125566899999999999 444 89999999999999977778778888776555 49999
Q ss_pred cCCCEEE-EEcCCeEEEEecCCceee--ee---ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC-
Q 022324 161 FDESKIV-GLIGTRICIWRRNGLRSV--FP---SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC- 233 (299)
Q Consensus 161 ~~~~~l~-~~~d~~i~v~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~- 233 (299)
|||.+++ ++.||++.+||-.+++.+ +. .|.+.+. .++|+|++..+++++.|.+++|||+.+.++++++....
T Consensus 200 PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 200 PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 9999999 999999999999988643 33 4555544 56999999999999999999999999999998886322
Q ss_pred --CceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 234 --APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 234 --~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+.-..+.|. +..|++.+.+|.|.+++......++.+.+|.. .|+++..+|++++|++||.-+
T Consensus 279 v~dqqvG~lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 279 VEDQQVGCLWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred hhceEEEEEEe-CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeeccCc
Confidence 222333454 45799999999999999999999999999999 999999999999999998754
No 63
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.2e-24 Score=181.04 Aligned_cols=229 Identities=14% Similarity=0.150 Sum_probs=186.5
Q ss_pred cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022324 39 LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC 118 (299)
Q Consensus 39 ~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~ 118 (299)
+.+.+.|.|+.++|.-..++. .--.+.+.+|.. .....++.++-..-||.++
T Consensus 10 ~~rSdRVKsVd~HPtePw~la----------------~LynG~V~IWny------------etqtmVksfeV~~~PvRa~ 61 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILA----------------ALYNGDVQIWNY------------ETQTMVKSFEVSEVPVRAA 61 (794)
T ss_pred hccCCceeeeecCCCCceEEE----------------eeecCeeEEEec------------ccceeeeeeeecccchhhh
Confidence 347777888888887666654 001233344422 1112256667778899998
Q ss_pred Ee-c-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce---eeeeccCC
Q 022324 119 RM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR---SVFPSREG 191 (299)
Q Consensus 119 ~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~~~~~~ 191 (299)
.| . .+.+++|+.|..|++|+..+++.+..|+.|..-+. ++.+|...+++ ++.|-.|++||-+..- +++++|..
T Consensus 62 kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H 141 (794)
T KOG0276|consen 62 KFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH 141 (794)
T ss_pred eeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence 88 3 44999999999999999999999999998876555 99999999999 8888899999999874 55555554
Q ss_pred ccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC---CeEEEEeCCCcEEEEeCCCCceE
Q 022324 192 TFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSDQRV 267 (299)
Q Consensus 192 ~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~ 267 (299)
-+. .++++|.++. +++++-|++|++|.+.+..+..++.+|...|+++.+-+. -+|++|+.|.+|+|||.++..|+
T Consensus 142 yVM-qv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV 220 (794)
T KOG0276|consen 142 YVM-QVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV 220 (794)
T ss_pred EEE-EEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH
Confidence 433 3577777666 999999999999999999999999999999999999975 59999999999999999999999
Q ss_pred EEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 268 ATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+++++|.. .|..+.|+|.-..+++||--+
T Consensus 221 ~TLeGHt~--Nvs~v~fhp~lpiiisgsEDG 249 (794)
T KOG0276|consen 221 QTLEGHTN--NVSFVFFHPELPIIISGSEDG 249 (794)
T ss_pred HHhhcccc--cceEEEecCCCcEEEEecCCc
Confidence 99999998 899999999999999998643
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=166.81 Aligned_cols=233 Identities=13% Similarity=0.181 Sum_probs=170.9
Q ss_pred ccCcHHHHHHHhhcc-CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh--hhhccccceeec-
Q 022324 25 ESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE--LAMKHHRFALEE- 100 (299)
Q Consensus 25 ~~~~~~~~~~i~~~~-~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~l~~- 100 (299)
+....|..+.-..++ .|...++|.+|+++|.++|+ ...|..+|+.... +..+...+....
T Consensus 94 q~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvAT----------------GsaD~SIKildvermlaks~~~em~~~~ 157 (430)
T KOG0640|consen 94 QGSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVAT----------------GSADASIKILDVERMLAKSKPKEMISGD 157 (430)
T ss_pred ccCCCCCcccceEEEeecccceeeeeeCCCCcEEEc----------------cCCcceEEEeehhhhhhhcchhhhccCC
Confidence 333344433333344 79999999999999999998 3345555554221 112211111111
Q ss_pred ---CceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee---EEEecCCCceeEEEEecCCCEEE-EEcC
Q 022324 101 ---GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC---VEEYSLPNAASLVDFDFDESKIV-GLIG 171 (299)
Q Consensus 101 ---g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~-~~~d 171 (299)
+...++++..|.++|+++.| |.+ .|++|+.|++|++||+..-.. .+.++.-.++.++.|+|.|.+++ |+..
T Consensus 158 ~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 158 TQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred cccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC
Confidence 12238899999999999999 544 999999999999999875432 33445556777899999999998 7777
Q ss_pred CeEEEEecCCceeeeecc--CCcccee--eeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-cc-CCceeEEEeCCC-
Q 022324 172 TRICIWRRNGLRSVFPSR--EGTFMKG--LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MH-CAPVTSLSLSED- 244 (299)
Q Consensus 172 ~~i~v~d~~~~~~~~~~~--~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~~~~- 244 (299)
..+++||+++-+.-.... .++...+ +..++.+...++|+.||.|++||--+++++.++. .| ...|.+..|..+
T Consensus 238 p~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 238 PTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNG 317 (430)
T ss_pred CceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCC
Confidence 899999999987443221 2222223 3455666779999999999999999999998886 44 457999999998
Q ss_pred CeEEEEeCCCcEEEEeCCCCceEEEeecc
Q 022324 245 QLIISGSSLGSIAISGLSSDQRVATLRST 273 (299)
Q Consensus 245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 273 (299)
+++++.+.|..+++|.+.+++++.++.+.
T Consensus 318 kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 318 KYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred eEEeecCCcceeeeeeecCCceEEEEecC
Confidence 99999999999999999999988887654
No 65
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=1.5e-22 Score=175.55 Aligned_cols=193 Identities=11% Similarity=0.120 Sum_probs=144.5
Q ss_pred eeEEeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCCce--------eEEEecCCCcee-EEEEecCCCEE-E-EE
Q 022324 104 DIDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYK--------CVEEYSLPNAAS-LVDFDFDESKI-V-GL 169 (299)
Q Consensus 104 ~~~~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~l-~-~~ 169 (299)
.+..+.+|.++|.++.| |+ + +|++|+.||+|++||+.++. ++..+.+|...+ .++|+|++..+ + ++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 35677999999999999 43 3 99999999999999997642 334566676555 49999998765 5 78
Q ss_pred cCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEE-----EeCCC
Q 022324 170 IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL-----SLSED 244 (299)
Q Consensus 170 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~-----~~~~~ 244 (299)
.|+.|++||+++++.............++|++++..|++++.|+.|++||+++++.+.++.+|.+.+... .|+++
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 8999999999987644332222223356899999999999999999999999999998888888765432 34577
Q ss_pred -CeEEEEeCCC----cEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 245 -QLIISGSSLG----SIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 245 -~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.+|++++.|+ .|+|||+++ ++++..+..+...+.+......++|.++++|+-
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 8888887764 799999995 666766654443224444444567888888853
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=187.99 Aligned_cols=235 Identities=18% Similarity=0.268 Sum_probs=192.4
Q ss_pred CCCCcchhccCcHHHHHHHhh-ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccc
Q 022324 17 SSKPRATIESLNGDIICMIFS-SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHR 95 (299)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~i~~-~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (299)
.+..+++|.+|+......+.. +.+|.+.|.++++..-++.+++ ...|.+.|+|. +..+.
T Consensus 223 ~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvs----------------gS~D~t~rvWd--~~sg~-- 282 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVS----------------GSTDKTERVWD--CSTGE-- 282 (537)
T ss_pred ecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEE----------------EecCCcEEeEe--cCCCc--
Confidence 344678889999999988888 8899999999999875666765 44688889993 22222
Q ss_pred ceeecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCe
Q 022324 96 FALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTR 173 (299)
Q Consensus 96 ~~l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~ 173 (299)
..+++.+|++.|.++...+.++++|+.|.+|++|++.++.++..+.+|...+. +..+ +..++ ++.|++
T Consensus 283 --------C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~ 352 (537)
T KOG0274|consen 283 --------CTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGT 352 (537)
T ss_pred --------EEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCce
Confidence 34566899999999999888999999999999999999999999997665554 7776 66777 999999
Q ss_pred EEEEecCCceeeeeccCCccceeeeeccCC-CeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCCCeEEEEe
Q 022324 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSEDQLIISGS 251 (299)
Q Consensus 174 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 251 (299)
|++||+.+.+.. ....++...+.++..++ +.+++|+.|+.|++||+++. +++..+..|...+..+.+. +++|++++
T Consensus 353 v~VW~~~~~~cl-~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~-~~~Lvs~~ 430 (537)
T KOG0274|consen 353 VKVWDPRTGKCL-KSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR-DNFLVSSS 430 (537)
T ss_pred EEEEEhhhceee-eeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc-cceeEecc
Confidence 999999976532 22333444466777777 88999999999999999999 8999999999988776653 36899999
Q ss_pred CCCcEEEEeCCCCceEEEeec-cCCCCcEEEEEcc
Q 022324 252 SLGSIAISGLSSDQRVATLRS-TDCTGHIICLMYP 285 (299)
Q Consensus 252 ~dg~i~iwd~~~~~~~~~~~~-~~~~~~i~~~~~s 285 (299)
.|++|++||..++++++++.+ +.. .|..+++.
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~~~~~--~v~~l~~~ 463 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEGRHVG--GVSALALG 463 (537)
T ss_pred ccccEEEeecccCceeeeeccCCcc--cEEEeecC
Confidence 999999999999999999998 445 89998886
No 67
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.7e-24 Score=163.63 Aligned_cols=225 Identities=17% Similarity=0.214 Sum_probs=171.5
Q ss_pred CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022324 40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR 119 (299)
Q Consensus 40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~ 119 (299)
++.+.|..+.|++..+.|+. ..| |+++++| ++........ -.|..++.+++
T Consensus 11 pP~d~IS~v~f~~~~~~LLv--ssW--------------DgslrlY--dv~~~~l~~~-----------~~~~~plL~c~ 61 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLV--SSW--------------DGSLRLY--DVPANSLKLK-----------FKHGAPLLDCA 61 (323)
T ss_pred CChhceeeEEEcCcCCcEEE--Eec--------------cCcEEEE--eccchhhhhh-----------eecCCceeeee
Confidence 56788999999988777663 123 5667777 3222222222 36899999999
Q ss_pred ecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceee
Q 022324 120 MKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGL 197 (299)
Q Consensus 120 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 197 (299)
|.+. .+++|+.||.|+.+|+.++.....-.+...+.++...+....++ |+.|++|++||.++.........+. .+.
T Consensus 62 F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k--kVy 139 (323)
T KOG1036|consen 62 FADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK--KVY 139 (323)
T ss_pred ccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc--eEE
Confidence 9555 99999999999999999988766555556666788888766666 9999999999999754332222222 467
Q ss_pred eeccCCCeEEEecCCCcEEEEEcCCcce------------------------------------------------eeec
Q 022324 198 CMRYFDPEAVVGCEDGTARVFDMYSRKC------------------------------------------------SQII 229 (299)
Q Consensus 198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------------------------------------~~~~ 229 (299)
+++-.++.|+.|..+..+.+||+++... ...|
T Consensus 140 ~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF 219 (323)
T KOG1036|consen 140 CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF 219 (323)
T ss_pred EEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeE
Confidence 8888888899988999999999875210 0111
Q ss_pred cccC---------CceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 230 RMHC---------APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 230 ~~~~---------~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+.|. .+|++|+|+|- +.|+||+.||.|.+||+.+.+.+..+..... .|.+++|+.+|..||.++.+
T Consensus 220 kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~--SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 220 KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET--SISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC--ceEEEEeccCCCeEEEEech
Confidence 2232 38899999998 9999999999999999999998888877765 79999999999999999865
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-23 Score=170.72 Aligned_cols=190 Identities=17% Similarity=0.200 Sum_probs=152.9
Q ss_pred eEEeeccccCeeEEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEE-E-EEcCCeEEEEe
Q 022324 105 IDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKI-V-GLIGTRICIWR 178 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l-~-~~~d~~i~v~d 178 (299)
++.+++|+.+|..+.| + ++ .+++|+.|+.+++||+.+......+.+|+.-+ +.+++|....+ + |+.||.|++||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 3455899999999999 3 33 89999999999999999998766788886554 59999987754 4 99999999999
Q ss_pred cCCc-eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce-eeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022324 179 RNGL-RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (299)
Q Consensus 179 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (299)
++.. ..+.....+.....+.+-|.+..+++++. +.+++||+-+|.. +..+..|...|+|+.+..+ ..|++|+-|+.
T Consensus 183 tR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 183 TRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred eccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 9976 34444333333334566677777887764 5899999996654 4444459999999999988 89999999999
Q ss_pred EEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 256 IAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+++||+.+.+.+..+.-.. +|.+++.+|+++.++.|--.+
T Consensus 262 VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred eEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccc
Confidence 9999998889999997665 899999999999999886544
No 69
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.8e-25 Score=187.50 Aligned_cols=189 Identities=19% Similarity=0.212 Sum_probs=166.9
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc-eeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
+..|.+|..+|-++.| .++ +|++|+.+|+|++||++.++.++++.+|.. +..++|+|.+.+.+ ++.|..+++||.+
T Consensus 63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence 3446899999999999 444 999999999999999999999999998864 45599999999999 9999999999998
Q ss_pred Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022324 181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (299)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (299)
... ..+..+... ..++.+.|++.++++|++|..+++||...|+.+.+|..|...+..+.|+|. -++++|+.|++++
T Consensus 143 k~Gc~~~~~s~~~v-v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 143 KKGCSHTYKSHTRV-VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred ccCceeeecCCcce-eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence 543 555554433 447799999999999999999999999999999999999999999999998 7899999999999
Q ss_pred EEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 258 ISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+||+++-+.+...+.... .|.+++|+|+++.+++|..
T Consensus 222 f~dletfe~I~s~~~~~~--~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 222 FWDLETFEVISSGKPETD--GVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred eeccceeEEeeccCCccC--CceeeeecCCceeeecCch
Confidence 999999998888887766 8999999999999988754
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=3.4e-23 Score=165.63 Aligned_cols=190 Identities=14% Similarity=0.151 Sum_probs=165.0
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
+.+|+||+..|+.+.+ ++. .+++++.|..|++|......+......|+..+. +..+|.+.+++ ++.|+...+.|++
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence 5677999999999999 444 899999999999999988777777777766665 99999999999 9999999999999
Q ss_pred CceeeeeccC---CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022324 181 GLRSVFPSRE---GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (299)
Q Consensus 181 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (299)
++........ +......+++|++-.+.+|..|+.+++||+.++..+..|.+|.++|..++|+.+ -+|++++.|+.|
T Consensus 334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence 8864332222 122335689999999999999999999999999999999999999999999998 899999999999
Q ss_pred EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
++||+|..+..+++...... ++.++.|++.|++|+.++
T Consensus 414 ~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred EEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeec
Confidence 99999999988888877655 799999999999999875
No 71
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.2e-24 Score=162.82 Aligned_cols=220 Identities=14% Similarity=0.170 Sum_probs=167.4
Q ss_pred HHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecc
Q 022324 32 ICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAH 111 (299)
Q Consensus 32 ~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h 111 (299)
+..+|.+..|.+.++|+++ +|.++|+ ..+|.++++|.. ...... ..+-.|
T Consensus 33 l~~lF~~~aH~~sitavAV--s~~~~aS----------------GssDetI~IYDm--~k~~ql----------g~ll~H 82 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAV--SGPYVAS----------------GSSDETIHIYDM--RKRKQL----------GILLSH 82 (362)
T ss_pred eeccccccccccceeEEEe--cceeEec----------------cCCCCcEEEEec--cchhhh----------cceecc
Confidence 4468889999999999988 4677887 558888999843 322222 223589
Q ss_pred ccCeeEEEe-cCC---EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee
Q 022324 112 SVGVDQCRM-KRG---LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV 185 (299)
Q Consensus 112 ~~~i~~~~~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 185 (299)
.+.|+++.| ++- .|++|+.||.|.+|+....+++.+++.|...+. ++++|.+++.+ .+.|+.+++||+-+++..
T Consensus 83 agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVA 162 (362)
T ss_pred ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccc
Confidence 999999998 333 899999999999999999999999999876666 99999999977 999999999999765422
Q ss_pred eeccCCccce--------------------------------------eeeeccCC-CeEEEecCCCcEEEEEcCCccee
Q 022324 186 FPSREGTFMK--------------------------------------GLCMRYFD-PEAVVGCEDGTARVFDMYSRKCS 226 (299)
Q Consensus 186 ~~~~~~~~~~--------------------------------------~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~ 226 (299)
+...-..... +.|..+.. ..+++|++|+.|.+||..+..+.
T Consensus 163 ~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 163 FVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred eeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccc
Confidence 2211111111 22333332 33789999999999999999999
Q ss_pred eeccccCCceeEEEeC--CC-CeEEEEeCCCcEEEEeCCCC-----ceEEEeeccCCCCcEEEEEc
Q 022324 227 QIIRMHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLSSD-----QRVATLRSTDCTGHIICLMY 284 (299)
Q Consensus 227 ~~~~~~~~~i~~~~~~--~~-~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~i~~~~~ 284 (299)
..+.+|...|.++.+- |+ .+|+++++||.|+|||++.. +++..+.... .++|+..
T Consensus 243 ~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~---RltCl~~ 305 (362)
T KOG0294|consen 243 TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNV---RLTCLRV 305 (362)
T ss_pred eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCC---ccceeee
Confidence 9999999999999854 45 79999999999999999876 3455554422 5666654
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.1e-24 Score=164.06 Aligned_cols=190 Identities=17% Similarity=0.255 Sum_probs=155.1
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNG 181 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~ 181 (299)
++.+.||...|+.+.. |-+ .+++++.|++|++||++..++...+.... ....+|+|+|-++| +...+.|++||++.
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSELIKLYDLRS 171 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCCeEEEEEecc
Confidence 7778999999999988 544 99999999999999999888877665432 33478999999999 66666999999985
Q ss_pred ce----eeeecc--CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCc---eeEEEeCCC-CeEEEEe
Q 022324 182 LR----SVFPSR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP---VTSLSLSED-QLIISGS 251 (299)
Q Consensus 182 ~~----~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---i~~~~~~~~-~~l~~~~ 251 (299)
-. ..+... .......+.++++|+.++.+...+.+.+.|.-+|..+..+..+... .....|.|| +++++|+
T Consensus 172 ~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs 251 (311)
T KOG1446|consen 172 FDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS 251 (311)
T ss_pred cCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec
Confidence 42 333332 1222335789999999999999999999999999998888755432 257889999 9999999
Q ss_pred CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 252 SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 252 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.||+|.+|+++++..+..+++.... ++.++.|+|.-.++++++.
T Consensus 252 ~dg~i~vw~~~tg~~v~~~~~~~~~-~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 252 DDGTIHVWNLETGKKVAVLRGPNGG-PVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred CCCcEEEEEcCCCcEeeEecCCCCC-CccccccCCceeeeeecCc
Confidence 9999999999999999999986333 8999999999988888763
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=3e-24 Score=164.29 Aligned_cols=244 Identities=14% Similarity=0.151 Sum_probs=190.0
Q ss_pred CcchhccCcHHH--HHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022324 20 PRATIESLNGDI--ICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA 97 (299)
Q Consensus 20 ~~~~~~~~~~~~--~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (299)
-+.+++.|..+- ...-.....|.+.|.+++|+.++..+++ ..-|+..|+| +|..++
T Consensus 48 WD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~----------------g~~Dk~~k~w--DL~S~Q---- 105 (347)
T KOG0647|consen 48 WDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFS----------------GGCDKQAKLW--DLASGQ---- 105 (347)
T ss_pred cCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEe----------------eccCCceEEE--EccCCC----
Confidence 466777777655 2222455579999999999999988886 3467788888 444443
Q ss_pred eecCceeeEEeeccccCeeEEEe-cC-C--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC
Q 022324 98 LEEGRIDIDQWKAHSVGVDQCRM-KR-G--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT 172 (299)
Q Consensus 98 l~~g~~~~~~~~~h~~~i~~~~~-~~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~ 172 (299)
+..+..|.++|.++.| +. + .|+|||+|++|+.||.+...++.+++.++.+.+++.- ...++ +..+.
T Consensus 106 -------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r 176 (347)
T KOG0647|consen 106 -------VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAER 176 (347)
T ss_pred -------eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCC
Confidence 2344689999999998 32 2 7899999999999999999999999999887776552 33455 99999
Q ss_pred eEEEEecCCceeeeeccCCcc---ceeeeeccCCCeEEEecCCCcEEEEEcCCc--ceeeeccccC---------CceeE
Q 022324 173 RICIWRRNGLRSVFPSREGTF---MKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQIIRMHC---------APVTS 238 (299)
Q Consensus 173 ~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~---------~~i~~ 238 (299)
.|.+|+++++...++...... ..+++...+.+..+.|+-.|.+.+..+..+ +.-..|+.|. ..|++
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNs 256 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNS 256 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecc
Confidence 999999988765555544432 234566666666899999999999988876 3334555554 25889
Q ss_pred EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
|+|+|. ..|+|++.||+..+||-.....+.+.+.+.. +|++.+|+.+|.++|-+.-
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYALG 313 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEee
Confidence 999999 9999999999999999988888888888887 9999999999999986643
No 74
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.2e-23 Score=164.78 Aligned_cols=244 Identities=19% Similarity=0.217 Sum_probs=179.3
Q ss_pred hccCcHHHHHHHh------hccCccchhhHHHhhhhH-HHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccc
Q 022324 24 IESLNGDIICMIF------SSLGFFDLVRCSAVCKSW-NAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRF 96 (299)
Q Consensus 24 ~~~~~~~~~~~i~------~~~~h~~~v~~~~~~~~~-~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (299)
.+.|+..-+..+| ++-+|.+.|.|++=+|.. ..+++ ..-|+.+++| ++..-.
T Consensus 42 ~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls~~aS----------------Gs~DG~VkiW--nlsqR~--- 100 (433)
T KOG0268|consen 42 TRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVAS----------------GSCDGEVKIW--NLSQRE--- 100 (433)
T ss_pred HHHhhhHHHHHHhhccchhhccccccccchhhcCcchhhhhhc----------------cccCceEEEE--ehhhhh---
Confidence 4456665555555 345899999999999887 67776 4577888888 322222
Q ss_pred eeecCceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCC---------------------------c-------
Q 022324 97 ALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEG---------------------------Y------- 142 (299)
Q Consensus 97 ~l~~g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------------~------- 142 (299)
.+.++++|.+.|..+.+..+.+++++.|.+|+.|.++- |
T Consensus 101 -------~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD 173 (433)
T KOG0268|consen 101 -------CIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWD 173 (433)
T ss_pred -------hhheeecccCceeeEEecccceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecc
Confidence 24455899999999988778889999999998887431 1
Q ss_pred ----eeEEEecCC-CceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcE
Q 022324 143 ----KCVEEYSLP-NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTA 215 (299)
Q Consensus 143 ----~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 215 (299)
.++..+... +.+.++.|+|....++ +..|++|.+||+++..-......+.....+||+|..-.+++|++|..+
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nl 253 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNL 253 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccc
Confidence 122222222 2334578888776655 668999999999987533222222223356999966669999999999
Q ss_pred EEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022324 216 RVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 216 ~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 293 (299)
+.||++.- +++..+..|.+.|.++.|+|. +-+++||.|.+|+||..+.+..-..+...... .|.++.||.|.+|+++
T Consensus 254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq-~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ-HVFCVKYSMDSKYIIS 332 (433)
T ss_pred eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh-eeeEEEEeccccEEEe
Confidence 99999864 567788899999999999998 88999999999999999877543333222222 7999999999999999
Q ss_pred eec
Q 022324 294 LCF 296 (299)
Q Consensus 294 ~s~ 296 (299)
||-
T Consensus 333 GSd 335 (433)
T KOG0268|consen 333 GSD 335 (433)
T ss_pred cCC
Confidence 985
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=3.4e-23 Score=159.32 Aligned_cols=194 Identities=14% Similarity=0.193 Sum_probs=159.8
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC------------c------eeEEEecCCCceeE-EEEecCC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG------------Y------KCVEEYSLPNAASL-VDFDFDE 163 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~~~-~~~~~~~ 163 (299)
...+..|.+++.+.+| +++ ++++|+.|..|+|.|++. + -.++++..|...+. +.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 5666899999999999 677 999999999999999861 1 13455555654454 9999999
Q ss_pred CEEE-EEcCCeEEEEecCCce--eeeeccC-CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec---cccCCce
Q 022324 164 SKIV-GLIGTRICIWRRNGLR--SVFPSRE-GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPV 236 (299)
Q Consensus 164 ~~l~-~~~d~~i~v~d~~~~~--~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~i 236 (299)
..|+ ++.|++|++||+.... ..++... ......+.++|.+.+++.|.+...+++||+.+.++...- ..|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 9999 9999999999998653 2232222 223346789999999999999999999999988765433 2788999
Q ss_pred eEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 237 TSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 237 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+++.+++. ++.++|+.||.|++||--+++|+.++...+++..|.+..|..+|+|++++++-+
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 99999998 999999999999999999999999998766656999999999999999988653
No 76
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=7.1e-24 Score=170.54 Aligned_cols=222 Identities=17% Similarity=0.256 Sum_probs=170.0
Q ss_pred CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022324 40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR 119 (299)
Q Consensus 40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~ 119 (299)
+|...+.|++++++++++++ ...|..+.+| +...-.. ++++++|.+.|.+++
T Consensus 200 ~h~keil~~avS~Dgkylat----------------gg~d~~v~Iw--~~~t~eh----------v~~~~ghr~~V~~L~ 251 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLAT----------------GGRDRHVQIW--DCDTLEH----------VKVFKGHRGAVSSLA 251 (479)
T ss_pred cccceeEEEEEcCCCcEEEe----------------cCCCceEEEe--cCcccch----------hhcccccccceeeee
Confidence 68888999999999999998 2233333445 3222222 444589999999999
Q ss_pred ecCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCc-eeeeeccCCccc
Q 022324 120 MKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGL-RSVFPSREGTFM 194 (299)
Q Consensus 120 ~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~-~~~~~~~~~~~~ 194 (299)
|..+ .|++++.|++|++|+++....+.++.+|...+. +....-++.+. +..|.++++|++... +.++..+.+...
T Consensus 252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sid 331 (479)
T KOG0299|consen 252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSID 331 (479)
T ss_pred eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCee
Confidence 9443 999999999999999998888877777765554 87777777776 889999999999655 466666655533
Q ss_pred eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-cc-----------CCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022324 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MH-----------CAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (299)
Q Consensus 195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-----------~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~ 261 (299)
++++. ++..+++|+.+|.|.+|++...+++.+.. .| +..|++++..|. .++++|+.+|.|++|-+
T Consensus 332 -cv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 332 -CVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred -eEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 33332 34459999999999999999888876654 11 237999999999 99999999999999999
Q ss_pred CCC----ceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 262 SSD----QRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 262 ~~~----~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
..| +++..+. -.+ .|++++|+++|+.+++|
T Consensus 410 ~~g~r~i~~l~~ls-~~G--fVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 410 EDGLRAINLLYSLS-LVG--FVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cCCccccceeeecc-ccc--EEEEEEEccCCCEEEEe
Confidence 887 3445554 223 89999999999988776
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.90 E-value=1.1e-22 Score=162.74 Aligned_cols=256 Identities=13% Similarity=0.132 Sum_probs=207.6
Q ss_pred CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhh
Q 022324 12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAM 91 (299)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (299)
+.+.+.++.+...-.++.+....+..+.||.-.|+.+.++|+...+++ ...|..+++| +...
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~----------------aSad~~i~vw--s~~~ 292 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVIT----------------ASADEIIRVW--SVPL 292 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheee----------------cCCcceEEee--cccc
Confidence 466777888888888999998888888999999999999999999887 4466777888 3333
Q ss_pred ccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCc---eeEEEEecCCCEE
Q 022324 92 KHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA---ASLVDFDFDESKI 166 (299)
Q Consensus 92 ~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l 166 (299)
+.... ....|.++|+.+.. +.+ ||++++.||+..+.|++++..+........ ..+.+|+|||.++
T Consensus 293 ~s~~~----------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLif 362 (506)
T KOG0289|consen 293 SSEPT----------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIF 362 (506)
T ss_pred ccCcc----------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEE
Confidence 33222 23789999999988 555 999999999999999999998877765422 3459999999999
Q ss_pred E-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-cCCceeEEEeC
Q 022324 167 V-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLS 242 (299)
Q Consensus 167 ~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~ 242 (299)
. |+.|+.+++||+..+. ..|.+|.+.+. .++|+-+|.+++++.+|+.|++||++.-+...++.. ....+.++.|.
T Consensus 363 gtgt~d~~vkiwdlks~~~~a~Fpght~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD 441 (506)
T KOG0289|consen 363 GTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK-AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFD 441 (506)
T ss_pred eccCCCceEEEEEcCCccccccCCCCCCcee-EEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEc
Confidence 9 9999999999998775 56778777766 458888898999999999999999998777776652 23469999999
Q ss_pred CC-CeEEEEeCCCcEEEEeCCC--CceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 243 ED-QLIISGSSLGSIAISGLSS--DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 243 ~~-~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+. .+|+.++.|=.|++++-.+ -.++..+..|.+ ..+++.|....++++++|+..
T Consensus 442 ~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg--~st~v~Fg~~aq~l~s~smd~ 498 (506)
T KOG0289|consen 442 QSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG--LSTGVRFGEHAQYLASTSMDA 498 (506)
T ss_pred CCCCeEEeecceeEEEEEecccccceeeehhhhccc--ccceeeecccceEEeeccchh
Confidence 88 8999998777777777443 456777777776 789999999999999999753
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.90 E-value=4.6e-22 Score=155.95 Aligned_cols=191 Identities=15% Similarity=0.205 Sum_probs=163.8
Q ss_pred eeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEe
Q 022324 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWR 178 (299)
Q Consensus 103 ~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d 178 (299)
..+.+|..|+++|.++.. |+. +++||+.|....+|++.++.....+.+|+..+ ++.|+.++.+|+ |..+|.|.||+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 337788999999999999 555 99999999999999999999888888886554 599999999999 99999999999
Q ss_pred cCCceeeeecc--CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022324 179 RNGLRSVFPSR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (299)
Q Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (299)
..++....... -....+ ++|+|....|++|+.||.+-+|.+.++...+.+.+|..++++=.|.|+ +.++++..||+
T Consensus 135 ~stg~~~~~~~~e~~dieW-l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEW-LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cccCceEEEeecccCceEE-EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 99886433332 222332 589998888999999999999999998888899999999999999999 99999999999
Q ss_pred EEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 256 IAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
|++|++.+++++..+...... +..++.++..+..++.|+
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~-~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGL-ELPCISLNLAGSTLTKGN 252 (399)
T ss_pred EEEEecCCCceeEEecccccC-cCCccccccccceeEecc
Confidence 999999999999999865543 677888888777777665
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.9e-24 Score=176.36 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=176.7
Q ss_pred cchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeec-cccCeeEEEe
Q 022324 42 FDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKA-HSVGVDQCRM 120 (299)
Q Consensus 42 ~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~-h~~~i~~~~~ 120 (299)
.+.|+++.++++|.+|+. ...++.+.+|.. ..... ++.+.+ |...|-+++|
T Consensus 217 ~~~vtSv~ws~~G~~Lav----------------G~~~g~v~iwD~--~~~k~----------~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAV----------------GTSDGTVQIWDV--KEQKK----------TRTLRGSHASRVGSLAW 268 (484)
T ss_pred CCceEEEEECCCCCEEEE----------------eecCCeEEEEeh--hhccc----------cccccCCcCceeEEEec
Confidence 566667777777777664 224455555521 11111 233356 9999999999
Q ss_pred cCCEEEEEeCCCcEEEEecCCceeEEE-ecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccce
Q 022324 121 KRGLILTGVGDKVMRLWSLEGYKCVEE-YSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMK 195 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~ 195 (299)
....+.+|+.|+.|..+|+...+.... +.+|...++ +.|++++.+++ |+.|+.+.|||..... ..+..|.+.+.
T Consensus 269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK- 347 (484)
T KOG0305|consen 269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK- 347 (484)
T ss_pred cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee-
Confidence 988999999999999999998776554 778888888 99999999999 9999999999996543 55666666654
Q ss_pred eeeeccCCCe-EEEe--cCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE--eCCCcEEEEeCCCCceEEE
Q 022324 196 GLCMRYFDPE-AVVG--CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG--SSLGSIAISGLSSDQRVAT 269 (299)
Q Consensus 196 ~~~~~~~~~~-l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~--~~dg~i~iwd~~~~~~~~~ 269 (299)
+++|+|.... ||+| +.|+.|++||..+++.+..+.. ...|.+|.|++. +-|+++ ..++.|.||+..+.+.+..
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence 6789988777 6665 4699999999999999988854 567999999998 545443 3578999999999999999
Q ss_pred eeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 270 LRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 270 ~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+.+|.. .|..++++|||..+++|+.
T Consensus 427 l~gH~~--RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 427 LLGHTS--RVLYLALSPDGETIVTGAA 451 (484)
T ss_pred ecCCcc--eeEEEEECCCCCEEEEecc
Confidence 999999 8999999999999999874
No 80
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=6.6e-22 Score=149.19 Aligned_cols=187 Identities=17% Similarity=0.181 Sum_probs=161.0
Q ss_pred eeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce
Q 022324 108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR 183 (299)
Q Consensus 108 ~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~ 183 (299)
++||.-+++.+.+ .++ +|++++.|.+..+|-..+|+.+.++.+|...+. ++.+.+.+.++ ++.|.++++||+.+++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk 85 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGK 85 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCc
Confidence 4799999999999 444 999999999999999989999999999987665 99999999999 9999999999999998
Q ss_pred eeeeccCCccceeeeeccCCCeEEEe-----cCCCcEEEEEcC-------CcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022324 184 SVFPSREGTFMKGLCMRYFDPEAVVG-----CEDGTARVFDMY-------SRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (299)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (299)
.......+.....+.|++.+..++.. +..+.|.++|++ ..++...+..+...++.+.|.|- ++|++|
T Consensus 86 ~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 86 QLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAG 165 (327)
T ss_pred EEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEe
Confidence 77776666666677899999885544 345679999998 34556677778899999999998 999999
Q ss_pred eCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 251 SSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 251 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.+||.|.+||+++|+ .+...+.|.. .|+.|.++||..+++++|-
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h~~--~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEHSS--KINDLQFSRDRTYFITGSK 210 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhhcc--ccccccccCCcceEEeccc
Confidence 999999999999985 4556567776 8999999999999999984
No 81
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.8e-23 Score=152.97 Aligned_cols=228 Identities=12% Similarity=0.072 Sum_probs=170.5
Q ss_pred CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022324 40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR 119 (299)
Q Consensus 40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~ 119 (299)
.|.+.|..+...-++..||| ..+|.++|++-. +.+.. ...+.+|.||.+||+.+.
T Consensus 9 ~H~D~IHda~lDyygkrlAT----------------csSD~tVkIf~v--~~n~~-------s~ll~~L~Gh~GPVwqv~ 63 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLAT----------------CSSDGTVKIFEV--RNNGQ-------SKLLAELTGHSGPVWKVA 63 (299)
T ss_pred hhhhhhhHhhhhhhcceeee----------------ecCCccEEEEEE--cCCCC-------ceeeeEecCCCCCeeEEe
Confidence 69999999999999999998 558899998822 22111 133667899999999999
Q ss_pred e--c-CC-EEEEEeCCCcEEEEecCCceeEE--EecCCCce-eEEEEecCC--CEEE-EEcCCeEEEEecCCc-----ee
Q 022324 120 M--K-RG-LILTGVGDKVMRLWSLEGYKCVE--EYSLPNAA-SLVDFDFDE--SKIV-GLIGTRICIWRRNGL-----RS 184 (299)
Q Consensus 120 ~--~-~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~-~~~~~~~~~--~~l~-~~~d~~i~v~d~~~~-----~~ 184 (299)
| | -+ +|++++.||.|.||.-.+++..+ ....|+.. .+++|.|.+ -.|+ ++.||.|.+.+.+.. ..
T Consensus 64 wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 64 WAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred ecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 9 2 23 99999999999999988885443 33455544 448887754 4566 999999999998765 24
Q ss_pred eeeccCCccceeeeeccC---C-----------CeEEEecCCCcEEEEEcCCcc--eeeeccccCCceeEEEeCCC----
Q 022324 185 VFPSREGTFMKGLCMRYF---D-----------PEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED---- 244 (299)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~---~-----------~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~---- 244 (299)
+...|.-... .++|.|. + ..|++|+.|+.|+||+..+++ ..+.+.+|.+.|..++|.|.
T Consensus 144 i~~aH~~Gvn-sVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 144 IVFAHEIGVN-SVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred hhhccccccc-eeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence 4555554444 3466665 2 239999999999999988753 34457899999999999985
Q ss_pred -CeEEEEeCCCcEEEEeCCCC-c-e-EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 245 -QLIISGSSLGSIAISGLSSD-Q-R-VATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~-~-~-~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
.+||+++.||++.||-.+.. + - ...++.... .++.++||+.|..|+.++
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~--~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD--VVWRVSWSLSGNILAVSG 275 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCcccccccccCCc--ceEEEEEeccccEEEEec
Confidence 47999999999999987632 1 1 112222233 799999999999999765
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.1e-23 Score=171.87 Aligned_cols=254 Identities=16% Similarity=0.138 Sum_probs=180.3
Q ss_pred hccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhh---h-cCCCCC-CCchhhhhhhhhhhccccce--eecCcee
Q 022324 37 SSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCK---L-HGFSNT-SGSSMRLHLEELAMKHHRFA--LEEGRID 104 (299)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~---~-~~~~~~-~d~~~~~~~~~~~~~~~~~~--l~~g~~~ 104 (299)
.+.+|...|.++++.|.|..+++ +++.|+..--. . ++.+.| +.+. +.++.+++.+.. ...|...
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~----i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQ----INSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccc----cceeeecCCCCeEEEEecCcc
Confidence 45578889999999999999998 67788771111 1 123333 1121 123334443311 1122222
Q ss_pred -----------------------eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCcee-EEEec----C--C
Q 022324 105 -----------------------IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKC-VEEYS----L--P 151 (299)
Q Consensus 105 -----------------------~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~-~~~~~----~--~ 151 (299)
+..-+||...++|.+| |.+ .++|++.||++++||+...+. ...+. . .
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 2233899999999999 544 899999999999999986542 23332 1 1
Q ss_pred CceeEEEEecCCCEEE-EEcCCeEEEEecCCce-----eeeeccCC-ccceeeeeccCCCeEEEecCCCcEEEEEcCCcc
Q 022324 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-----SVFPSREG-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224 (299)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 224 (299)
-.+..++|+++++.|+ |+.||+|.+|+..+.. .+...|.. ....++.|++++++|++-+.|+++++||+++.+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 2345599999999999 9999999999986432 33344443 233467899999999999999999999999753
Q ss_pred -eeeeccc--cCCceeEEEeCCC-CeEEEEeC------CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 225 -CSQIIRM--HCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 225 -~~~~~~~--~~~~i~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
++....+ ...+-+.++|+|+ ++|++|+. .|.+.+||..+.+.++++..... .|..+.|+|.=+.+++|
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a--Svv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA--SVVRCLWHPKLNQIFAG 475 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc--eEEEEeecchhhheeee
Confidence 4444432 2345678899999 88999865 56899999999999999987766 89999999987777776
Q ss_pred ec
Q 022324 295 CF 296 (299)
Q Consensus 295 s~ 296 (299)
+-
T Consensus 476 sg 477 (641)
T KOG0772|consen 476 SG 477 (641)
T ss_pred cC
Confidence 64
No 83
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1.1e-23 Score=163.04 Aligned_cols=177 Identities=19% Similarity=0.301 Sum_probs=148.4
Q ss_pred ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec---------CCCceeEEEEecCCCEEE-EEcCCeEEEE
Q 022324 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---------LPNAASLVDFDFDESKIV-GLIGTRICIW 177 (299)
Q Consensus 110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~-~~~d~~i~v~ 177 (299)
+..+-+-|..| |++ +|++|+.||.|.+||..+|+....++ ....+.+++|+.|...++ |+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 44556777788 777 99999999999999999998765443 234566799999999999 9999999999
Q ss_pred ecCCceee--ee-ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC
Q 022324 178 RRNGLRSV--FP-SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (299)
Q Consensus 178 d~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (299)
.+.++.+. +. .|...+. ++.|+.++..+++++.|.++++.-+.+|+++.++++|...|+...|.++ ..+++++.|
T Consensus 291 ri~tG~ClRrFdrAHtkGvt-~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVT-CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecchHHHHhhhhhccCee-EEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99998743 33 3333332 5677778888999999999999999999999999999999999999999 999999999
Q ss_pred CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC
Q 022324 254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 287 (299)
|+|++|+..+.+|+.+++......+|.++..-|.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence 9999999999999999986654347888877764
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2e-23 Score=174.60 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=189.2
Q ss_pred CCCCCCcchhccCcHHHHH------HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh
Q 022324 15 KRSSKPRATIESLNGDIIC------MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE 88 (299)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~------~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~ 88 (299)
...++.+..|+.|+..... .+.++..|.+.|+.++.+-+++-+++ ...|.++|+|...
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS----------------~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLIS----------------ASSDTTVKVWNAH 103 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEE----------------ecCCceEEEeecc
Confidence 4577889999999854332 47888999999999999999988876 4578888888431
Q ss_pred hhhccccceeecCceeeEEeeccccCeeEEEe--cCC-EEEEEeCCCcEEEEecCCc--eeEEEec---------CC-Cc
Q 022324 89 LAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM--KRG-LILTGVGDKVMRLWSLEGY--KCVEEYS---------LP-NA 153 (299)
Q Consensus 89 ~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~---------~~-~~ 153 (299)
..+.....++..|.+.|.|+++ +++ ++++|+-|+.|.+||++++ +.+.++. ++ .+
T Consensus 104 ----------~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 104 ----------KDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred ----------cCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 1112446677899999999998 344 9999999999999999987 3333322 23 45
Q ss_pred eeEEEEecCCCEEE-EEcCCeEEEEecCCceee--eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022324 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR 230 (299)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 230 (299)
+++++.++.+..++ |+.++.+++||.++.+.+ +.+|...+. ++-++.++..+++++.||+|++||+...+++.++.
T Consensus 174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~ 252 (735)
T KOG0308|consen 174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI 252 (735)
T ss_pred eeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence 56699999998888 999999999999988644 445555443 56788899999999999999999999999999999
Q ss_pred ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc
Q 022324 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP 285 (299)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 285 (299)
.|...|+++..+|+ ..+.+|+.||.|..=|+++......+..... +|..+..+
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~ 306 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLH 306 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhc
Confidence 99999999999999 9999999999999999988433222222222 45555444
No 85
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.7e-22 Score=146.38 Aligned_cols=239 Identities=15% Similarity=0.233 Sum_probs=173.2
Q ss_pred ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcc-ccceeec--CceeeEEeeccccC
Q 022324 38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH-HRFALEE--GRIDIDQWKAHSVG 114 (299)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~l~~--g~~~~~~~~~h~~~ 114 (299)
.+.-...|++++|.|.+.+.+. .....+.|+.-...-..+ ....-+. .....+.-+.|.+.
T Consensus 28 ~l~dsqairav~fhp~g~lyav----------------gsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgs 91 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAV----------------GSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGS 91 (350)
T ss_pred EecchhheeeEEecCCCceEEe----------------ccCCceEEEEccccccCcccccccccCCCeEEeeeccccCcc
Confidence 3455567889999999988775 222333444322100001 0000011 11114455789999
Q ss_pred eeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE-----EEecCCCceeE-EEEecC----CCEEE--EEcCCeEEEEecC
Q 022324 115 VDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-----EEYSLPNAASL-VDFDFD----ESKIV--GLIGTRICIWRRN 180 (299)
Q Consensus 115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~-~~~~~~----~~~l~--~~~d~~i~v~d~~ 180 (299)
|.|.+| +++ ++++|+.|.+|++.-.+...+. ..+.-|+..+. ++|-.+ +.+++ +..|-.|++-|..
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~ 171 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG 171 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC
Confidence 999999 666 9999999999999876543322 24555666665 888432 34555 4556688888887
Q ss_pred Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-------cCCceeEEEeCCC-CeEEEE
Q 022324 181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-------HCAPVTSLSLSED-QLIISG 250 (299)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~-~~l~~~ 250 (299)
+++ ..+..|.+++... .+.++-++++|++|.+|++||++-..++.++.. ....|.++++.|. ++|++|
T Consensus 172 ~g~~~~a~sghtghilal--yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 172 RGQGFHALSGHTGHILAL--YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCCcceeecCCcccEEEE--EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 664 6777888886543 345577799999999999999998888777641 2367999999999 999999
Q ss_pred eCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 251 SSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 251 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
..|.+-.+||++.++.++.+..|.. .|+++.|+|.-.||++||+
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsa--dir~vrfsp~a~yllt~sy 293 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSA--DIRCVRFSPGAHYLLTCSY 293 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCcc--ceeEEEeCCCceEEEEecc
Confidence 9999999999999999999999988 9999999999999999986
No 86
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=5.2e-23 Score=159.32 Aligned_cols=256 Identities=14% Similarity=0.126 Sum_probs=204.7
Q ss_pred CCCCCCCCCCcchhccCcHHHHH--HHhh------ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchh
Q 022324 11 PPPKKRSSKPRATIESLNGDIIC--MIFS------SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSM 82 (299)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~--~i~~------~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~ 82 (299)
+..-..++..+-.|..|+.-+++ +-++ +.-|.+.|.|+.|+++...+|+ ...|+.+
T Consensus 224 DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs----------------GsqDGkI 287 (508)
T KOG0275|consen 224 DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS----------------GSQDGKI 287 (508)
T ss_pred CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc----------------cCcCCcE
Confidence 34444556678889999977665 2222 3358899999999999999998 5578888
Q ss_pred hhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEE
Q 022324 83 RLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDF 159 (299)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~ 159 (299)
|+| .+..+.+.+.+. ++|+..|+|+.| .++ .+++++.|.++++.-+.+|+++..+++|..-+. ..|
T Consensus 288 KvW--ri~tG~ClRrFd---------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 288 KVW--RIETGQCLRRFD---------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred EEE--EEecchHHHHhh---------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 998 556666655553 489999999999 455 999999999999999999999999999987776 999
Q ss_pred ecCCCEEE-EEcCCeEEEEecCCcee--eeeccC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc--
Q 022324 160 DFDESKIV-GLIGTRICIWRRNGLRS--VFPSRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-- 232 (299)
Q Consensus 160 ~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-- 232 (299)
.++|..++ ++.||+|++|+..+.++ .+.... -.+..++-+..+.+.++.+...+++.+-++. |+.++.+...
T Consensus 357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR 435 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR 435 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc
Confidence 99999999 99999999999988763 333322 2233344444445559999999999999987 8888888632
Q ss_pred -CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 233 -CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 233 -~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.+...+...+|. .++.+.++|+.++.|.+.+|++.+++..|+. -+..++-+|..+.||+=+-
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPHqNllAsYsE 499 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPHQNLLASYSE 499 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcccchhhhhcc
Confidence 234556667888 9999999999999999999999999999988 8999999999988887554
No 87
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=155.77 Aligned_cols=253 Identities=13% Similarity=0.102 Sum_probs=174.1
Q ss_pred HhhccCccchhhHHHhhhhHHHHhh-----hhhHHHH--HHhhhc---CCCCCCCchhhhhhhhhhhccccceee---cC
Q 022324 35 IFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQL--LYCKLH---GFSNTSGSSMRLHLEELAMKHHRFALE---EG 101 (299)
Q Consensus 35 i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~--~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~l~---~g 101 (299)
+-.+.+|.+.|+|++|+.+|+++++ ++++|+. +..+.+ +...+.|+.-++ .|.|+-+.+. ..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V-----~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV-----VFAPDCKSVVVSVKR 153 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEE-----EECCCcceEEEEEcc
Confidence 3455699999999999999999999 6778887 334433 222223332222 2233322111 11
Q ss_pred ceeeEEe-----------------------eccccCeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeE
Q 022324 102 RIDIDQW-----------------------KAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL 156 (299)
Q Consensus 102 ~~~~~~~-----------------------~~h~~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 156 (299)
+..+..| +.|...|..+-..++ +|++++.|..|.+|++. |+.+..+........
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 1111111 345555555555444 99999999999999999 999988886544444
Q ss_pred -EEEecCCCEEE-EEcCCeEEEEecCC---ce-------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-
Q 022324 157 -VDFDFDESKIV-GLIGTRICIWRRNG---LR-------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR- 223 (299)
Q Consensus 157 -~~~~~~~~~l~-~~~d~~i~v~d~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~- 223 (299)
.+++|+|++++ ++.-..|++|.+-- +. ..+.+|...+. ..||++++..+++.+.||++++||.+-.
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~-~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL-AAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee-eeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 89999999999 88888999998731 11 23345554444 3588888888999999999999997631
Q ss_pred ------ceeeecc----ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022324 224 ------KCSQIIR----MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLF 292 (299)
Q Consensus 224 ------~~~~~~~----~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 292 (299)
+.+.+.. ...+....++++|+ +.||. +....|+++..++|+...+++..++. .|.+++|+++|++++
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIA 389 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe-ecCCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEe
Confidence 2222221 22334458999999 65554 45678999999999988888754444 899999999999999
Q ss_pred eeec
Q 022324 293 FLCF 296 (299)
Q Consensus 293 s~s~ 296 (299)
+++-
T Consensus 390 tcGd 393 (420)
T KOG2096|consen 390 TCGD 393 (420)
T ss_pred eecc
Confidence 9874
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4e-22 Score=149.33 Aligned_cols=182 Identities=14% Similarity=0.191 Sum_probs=144.3
Q ss_pred cccCeeEEEec---CCEEEEEeCCCcEEEEecC-CceeEEEecCCCc-eeEEEEecCCCE-EE-EEcCCeEEEEecCCce
Q 022324 111 HSVGVDQCRMK---RGLILTGVGDKVMRLWSLE-GYKCVEEYSLPNA-ASLVDFDFDESK-IV-GLIGTRICIWRRNGLR 183 (299)
Q Consensus 111 h~~~i~~~~~~---~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~-l~-~~~d~~i~v~d~~~~~ 183 (299)
-++.+..++|. ++.+++++.||++++||.. ..+++..++.|.. +.++.+++..+. ++ ++.|++|++|+...+.
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 35678888883 2299999999999999964 3457888887754 556999886554 44 8999999999998775
Q ss_pred --eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC-C-CeEEEEeCCCcEEE
Q 022324 184 --SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAI 258 (299)
Q Consensus 184 --~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~i 258 (299)
..+.++...+. ...++|..+. +++++.|+.+++||++....-..+..|...|.++.|+. + .+++||+.|+.|++
T Consensus 139 Sv~Tf~gh~~~Iy-~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 139 SVQTFNGHNSCIY-QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRG 217 (311)
T ss_pred ceEeecCCccEEE-EEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEE
Confidence 45666655544 3478888766 88999999999999987544445889999999999996 3 89999999999999
Q ss_pred EeCCCC-ceEEEeeccCCCCcEEEEEccCCCC-eEEeee
Q 022324 259 SGLSSD-QRVATLRSTDCTGHIICLMYPQFLH-MLFFLC 295 (299)
Q Consensus 259 wd~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s 295 (299)
||+++- .++..+.+|.- .|+.++|||.-. .|+++|
T Consensus 218 wDir~~r~pl~eL~gh~~--AVRkvk~Sph~~~lLaSas 254 (311)
T KOG0277|consen 218 WDIRNLRTPLFELNGHGL--AVRKVKFSPHHASLLASAS 254 (311)
T ss_pred EehhhccccceeecCCce--EEEEEecCcchhhHhhhcc
Confidence 999974 56888888888 999999999654 555554
No 89
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=146.66 Aligned_cols=255 Identities=15% Similarity=0.121 Sum_probs=203.4
Q ss_pred CCCCCCCCCCCcchhccCcHHHHHHHhh--ccCccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhh
Q 022324 10 SPPPKKRSSKPRATIESLNGDIICMIFS--SLGFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHL 86 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~ 86 (299)
.++.+.+++..+.+...|+.+-.....+ +.+|.+.|-.+++.|. .+.+++ ...|.++++|
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~at----------------as~dk~ir~w- 92 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFAT----------------ASGDKTIRIW- 92 (313)
T ss_pred ccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEE----------------ecCCceEEEE-
Confidence 4567788888999999999988865554 4489998888888765 455554 3477888888
Q ss_pred hhhhhccccceeecCceeeEEeeccccCeeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE
Q 022324 87 EELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK 165 (299)
Q Consensus 87 ~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (299)
+++.+..-..+ ....+.|+....|++ +++.++.|..|...|..+.+.+...+....+..++|+.++.+
T Consensus 93 -d~r~~k~~~~i----------~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~ 161 (313)
T KOG1407|consen 93 -DIRSGKCTARI----------ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDL 161 (313)
T ss_pred -EeccCcEEEEe----------eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCE
Confidence 43433333222 334445665566766 999999999999999999999888887777777999988888
Q ss_pred EE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC
Q 022324 166 IV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242 (299)
Q Consensus 166 l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 242 (299)
++ ....|.|.|.....-+ ..++.|... ..++.+.|++.++++|+.|..+.+||+..--+++.+.-+.-+|..+.|+
T Consensus 162 Fflt~GlG~v~ILsypsLkpv~si~AH~sn-CicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 162 FFLTNGLGCVEILSYPSLKPVQSIKAHPSN-CICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFS 240 (313)
T ss_pred EEEecCCceEEEEeccccccccccccCCcc-eEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEec
Confidence 77 7777999998876443 444555533 3356788999999999999999999999888889998899999999999
Q ss_pred CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 243 ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 243 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
-+ ++||+|++|..|-|=++++|..+..++... +-..++|+|...+||-++.
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEec
Confidence 88 999999999999999999999999987665 7899999999999987653
No 90
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3e-21 Score=142.59 Aligned_cols=230 Identities=11% Similarity=0.130 Sum_probs=176.4
Q ss_pred CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022324 40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR 119 (299)
Q Consensus 40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~ 119 (299)
.|.+.|.|.+|+|.++++++ ...|.++|+. .|..+... +.| .--.+.-|.+.|..++
T Consensus 87 hhkgsiyc~~ws~~geliat----------------gsndk~ik~l----~fn~dt~~-~~g--~dle~nmhdgtirdl~ 143 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIAT----------------GSNDKTIKVL----PFNADTCN-ATG--HDLEFNMHDGTIRDLA 143 (350)
T ss_pred ccCccEEEEEecCccCeEEe----------------cCCCceEEEE----eccccccc-ccC--cceeeeecCCceeeeE
Confidence 58899999999999999998 4456666654 12222111 111 1223467999999999
Q ss_pred e---c--CC-EEEEEe-CCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeee----
Q 022324 120 M---K--RG-LILTGV-GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP---- 187 (299)
Q Consensus 120 ~---~--~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~---- 187 (299)
| + .+ +|++++ .|..|++-|..+|+..+.+.+|..-+..-++.++-.++ ++.|.+|++||++-+..+-.
T Consensus 144 fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~ 223 (350)
T KOG0641|consen 144 FLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND 223 (350)
T ss_pred EecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCc
Confidence 8 2 22 677765 46788888999999999999998877766666788888 99999999999986643221
Q ss_pred ----ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022324 188 ----SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 188 ----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~ 262 (299)
..+......+++.|.+..|++|..|....+||++-++.++.+..|...|.++.|+|. .++++++.|..|++-|++
T Consensus 224 ~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 224 FHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred ccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 112223335789999999999999999999999999999999999999999999999 999999999999999996
Q ss_pred CCce-----EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 263 SDQR-----VATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 263 ~~~~-----~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
|.+ +.....|.. .+..+.|+|..-.+++.|
T Consensus 304 -gdla~el~~~vv~ehkd--k~i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 304 -GDLAHELPIMVVAEHKD--KAIQCRWHPQDFSFISSS 338 (350)
T ss_pred -cchhhcCceEEEEeccC--ceEEEEecCccceeeecc
Confidence 432 333345555 778889999887777665
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=1.3e-21 Score=157.45 Aligned_cols=237 Identities=12% Similarity=0.082 Sum_probs=172.2
Q ss_pred ccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeE
Q 022324 38 SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQ 117 (299)
Q Consensus 38 ~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~ 117 (299)
...|.+.|+-++..|+-..|+.+ ......+-+| +.+..+..........+-..+.+|++.=..
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt---------------~t~~~dv~Vf--d~tk~~s~~~~~~~~~Pdl~L~gH~~eg~g 182 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVAT---------------KTSSGDVYVF--DYTKHPSKPKASGECRPDLRLKGHEKEGYG 182 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEe---------------cCCCCCEEEE--EeccCCCcccccccCCCceEEEeecccccc
Confidence 34688999988888887666530 0012222233 323333322111011123356899998778
Q ss_pred EEec---CCEEEEEeCCCcEEEEecCCce-------eEEEecCCCceeE-EEEecCCCEEE--EEcCCeEEEEecCCc--
Q 022324 118 CRMK---RGLILTGVGDKVMRLWSLEGYK-------CVEEYSLPNAASL-VDFDFDESKIV--GLIGTRICIWRRNGL-- 182 (299)
Q Consensus 118 ~~~~---~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~l~--~~~d~~i~v~d~~~~-- 182 (299)
+.|+ .+.|++++.|++|++||+.... +...+.+|+.++. ++|++-...++ ++.|+.+.+||+++.
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 8883 3399999999999999987432 3456778888887 99998766544 888999999999952
Q ss_pred --eeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC--CeEEEEeCCCcE
Q 022324 183 --RSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSI 256 (299)
Q Consensus 183 --~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i 256 (299)
......|.+.+. +++|+|.+.. ||+|+.|++|.+||+|+- +++..+.+|...|..+.|+|+ ..||+++.|+.+
T Consensus 263 ~~~~~~~ah~~~vn-~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl 341 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVN-CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL 341 (422)
T ss_pred CCcccccccCCcee-EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE
Confidence 234455555554 5688888777 889999999999999974 467888899999999999998 789999999999
Q ss_pred EEEeCCCC--------------ceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 257 AISGLSSD--------------QRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 257 ~iwd~~~~--------------~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
.|||+..- +++..-.+|.. .|..+.|+|+..+++++
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~--kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA--KVSDFSWNPNEPWTIAS 391 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc--ccccccCCCCCCeEEEE
Confidence 99999641 23455667777 89999999998877654
No 92
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.6e-22 Score=171.86 Aligned_cols=187 Identities=16% Similarity=0.207 Sum_probs=155.2
Q ss_pred eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022324 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLR- 183 (299)
Q Consensus 109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~- 183 (299)
.+|.++|..+.| +.+ ++++|+.|..|++|+..+.+++.++.+|-.-+ .+.|++.-..|+ ++.|.+|+||+-.+..
T Consensus 48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~ 127 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC 127 (1202)
T ss_pred hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce
Confidence 799999999999 555 99999999999999999999999999986555 499999999999 9999999999998876
Q ss_pred -eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC--------c---------------------ceeeeccccC
Q 022324 184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS--------R---------------------KCSQIIRMHC 233 (299)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--------~---------------------~~~~~~~~~~ 233 (299)
.++++|..-+. +..|+|..+.+++++-|.+|++||+.- + -....+.+|.
T Consensus 128 iavltGHnHYVM-cAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 128 IAVLTGHNHYVM-CAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred EEEEecCceEEE-eeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 44555543322 345677777799999999999999741 1 0123445899
Q ss_pred CceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc--eEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
..|+-++|+|. .++++|+.|..|++|.....+ .+.+..+|.+ .|.++-|+|...++++.|--+
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n--nVssvlfhp~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN--NVSSVLFHPHQDLILSNSEDK 272 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC--CcceEEecCccceeEecCCCc
Confidence 99999999999 999999999999999987654 3567788888 999999999999999887543
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.9e-22 Score=158.78 Aligned_cols=225 Identities=16% Similarity=0.146 Sum_probs=173.8
Q ss_pred CCCCCCCCCCCcchhccCcHHHHHHHhhcc-CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh
Q 022324 10 SPPPKKRSSKPRATIESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE 88 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~ 88 (299)
|+.+..-.++.+..+.+|+..++.....|. +|...+.+++|+|++..+++ ...|.++-.|..
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~----------------Gs~dr~i~~wdl- 341 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT----------------GSPDRTIIMWDL- 341 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe----------------cCCCCcEEEecC-
Confidence 455556667888889999999998777665 46688999999999999887 334455545522
Q ss_pred hhhccccceeecCceeeEEeeccc-cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE
Q 022324 89 LAMKHHRFALEEGRIDIDQWKAHS-VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK 165 (299)
Q Consensus 89 ~~~~~~~~~l~~g~~~~~~~~~h~-~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (299)
++.. ...+++-. ..|.+++. +|+ ++++...|..|++++.++......+..+.++.+.+.+.++++
T Consensus 342 -----Dgn~-------~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 342 -----DGNI-------LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKL 409 (519)
T ss_pred -----Ccch-------hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcE
Confidence 2211 12223332 45888888 666 888889999999999998877777788888888999999999
Q ss_pred EE-EEcCCeEEEEecCCce--eeeeccCCc-cceeeeeccCC-CeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEE
Q 022324 166 IV-GLIGTRICIWRRNGLR--SVFPSREGT-FMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (299)
Q Consensus 166 l~-~~~d~~i~v~d~~~~~--~~~~~~~~~-~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~ 240 (299)
++ .-.+..+++||++... ..+.++... ....-||...+ ..+++|++|++|+||+..+++++.++.+|...|++++
T Consensus 410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS 489 (519)
T ss_pred EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence 88 8889999999999664 233344332 22122444443 4489999999999999999999999999999999999
Q ss_pred eCCC--CeEEEEeCCCcEEEEeCCC
Q 022324 241 LSED--QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 241 ~~~~--~~l~~~~~dg~i~iwd~~~ 263 (299)
|+|. .++|+|+.||+|+||....
T Consensus 490 wNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCCHHHhhccCCCCeEEEecCCc
Confidence 9996 8999999999999998753
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.4e-22 Score=170.13 Aligned_cols=188 Identities=15% Similarity=0.150 Sum_probs=130.2
Q ss_pred EEee-ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-----------EEEec---CCCEEE-
Q 022324 106 DQWK-AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-----------VDFDF---DESKIV- 167 (299)
Q Consensus 106 ~~~~-~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------~~~~~---~~~~l~- 167 (299)
+.+. +|.+.|+++.| ++| |||+|+.|+.|+||.+...+....-......+. +..++ .++...
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3445 89999999999 677 999999999999999875332110000000000 11111 001111
Q ss_pred --EEcCCeEEEEecCCc---eeeeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEe
Q 022324 168 --GLIGTRICIWRRNGL---RSVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241 (299)
Q Consensus 168 --~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 241 (299)
+..... .+.+.... ...+....+|...++.++...+ +|++++.|.+|++|++...+++..| .|.+.|+|++|
T Consensus 340 ~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAF 417 (712)
T ss_pred ccccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEe
Confidence 112222 22222111 1222333444444666666644 4899999999999999999999999 79999999999
Q ss_pred CCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 242 SED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 242 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+|- +++++|+-||.++||++...+.+.-...+. -|++++|.|||++.+.|++.|
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~---lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD---LITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhh---hheeEEeccCCceEEEEEecc
Confidence 984 999999999999999998777666555554 799999999999999999987
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=7.7e-22 Score=156.99 Aligned_cols=236 Identities=14% Similarity=0.130 Sum_probs=183.1
Q ss_pred HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecccc
Q 022324 34 MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113 (299)
Q Consensus 34 ~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~ 113 (299)
..+.+--|.+.|..+.|-++...+++ ...|..+++|...... ...+.++.|..+
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlat----------------gg~Dr~Ik~W~v~~~k----------~~~~~tLaGs~g 220 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLAT----------------GGSDRIIKLWNVLGEK----------SELISTLAGSLG 220 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhh----------------cchhhhhhhhhcccch----------hhhhhhhhccCC
Confidence 34455568888999999888888887 3356667777431111 112556688899
Q ss_pred CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeecc
Q 022324 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR 189 (299)
Q Consensus 114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~ 189 (299)
+|+.+.| +++ ++++++.|+.+++|++...+...++.+|...++ +.|......++ ++.|.+|+.||+....+.....
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc
Confidence 9999999 555 999999999999999999999999999977666 88877666577 9999999999999865443333
Q ss_pred CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE
Q 022324 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA 268 (299)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 268 (299)
.+... ..+......+++|..|++|++||.++..+..+...+. .|+++..+++ ..+.+++.|.++.+.|+++.+..+
T Consensus 301 ~~S~c--nDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~ 377 (459)
T KOG0288|consen 301 PGSQC--NDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ 377 (459)
T ss_pred ccccc--cceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEE
Confidence 32222 1222224558899999999999999999998886654 8999999999 778888999999999999998888
Q ss_pred EeeccCC--CCcEEEEEccCCCCeEEeeeccc
Q 022324 269 TLRSTDC--TGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 269 ~~~~~~~--~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
++..... ..-.+.+.|||++.|+++||..+
T Consensus 378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg 409 (459)
T KOG0288|consen 378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADG 409 (459)
T ss_pred EeeccccccccccceeEECCCCceeeeccCCC
Confidence 7765432 12588999999999999999754
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.2e-21 Score=162.43 Aligned_cols=191 Identities=19% Similarity=0.235 Sum_probs=158.7
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc--eeEEEecCCC-ceeEEEE-ecCCCEEE-EEcCCeEEEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY--KCVEEYSLPN-AASLVDF-DFDESKIV-GLIGTRICIW 177 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~-~~~~~~~-~~~~~~l~-~~~d~~i~v~ 177 (299)
+..++.|.+-|+.+.. .++ .|+++|.|-+|++|+...+ -+..++..|. .+.+++. .++..+++ |+-|+.|.+|
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW 145 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence 4456889999999877 444 9999999999999999876 5677777775 4555777 67777788 9999999999
Q ss_pred ecCCcee----ee-----eccC-Cccce--eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-
Q 022324 178 RRNGLRS----VF-----PSRE-GTFMK--GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED- 244 (299)
Q Consensus 178 d~~~~~~----~~-----~~~~-~~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~- 244 (299)
|++++.. .+ .... ++... .+++++.+..+++|+..+.+++||.++.+.+..+++|...|..+..++|
T Consensus 146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC
Confidence 9996621 01 0111 22222 3567777778999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 245 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
..++++++||+|++||+...+|+.++..|.+ .|+++..+|+-+.+.+|+-.
T Consensus 226 t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd 276 (735)
T KOG0308|consen 226 TRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRD 276 (735)
T ss_pred CeEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCC
Confidence 8999999999999999999999999999999 89999999999999998754
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=2.6e-21 Score=156.99 Aligned_cols=187 Identities=15% Similarity=0.163 Sum_probs=149.2
Q ss_pred EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE--EEcCCeEEEEecCC
Q 022324 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV--GLIGTRICIWRRNG 181 (299)
Q Consensus 107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~d~~i~v~d~~~ 181 (299)
++.-....|.++.| .|| +|+.|...|.|++||+.+...+..+..|...+. +.|+|+++.++ |+.|+.+++||+.+
T Consensus 63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 34567788999999 777 899999999999999777666777888877776 89999887755 78888999999998
Q ss_pred cee--eeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022324 182 LRS--VFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (299)
Q Consensus 182 ~~~--~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (299)
... .+..|+..+. +.++.|..+ .+++|+.||+|++||.++. ..+.++ .|..+|..+.+-|. ..+++++ ...+
T Consensus 143 a~v~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~v 219 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSV 219 (487)
T ss_pred cEEEEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeE
Confidence 853 2344444433 345666655 5899999999999999987 566677 78999999999998 8888887 4669
Q ss_pred EEEeCCCC-ceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 257 AISGLSSD-QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 257 ~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
++||+-+| +.+..+..|.. .|+|+++..++..|++||+-+
T Consensus 220 kVWDl~~G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNK--TVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred EEEEecCCceehhhhhcccc--eEEEEEeecCCceEeeccccc
Confidence 99999865 45555555777 899999999999999999753
No 98
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=1.3e-21 Score=159.81 Aligned_cols=193 Identities=16% Similarity=0.174 Sum_probs=142.0
Q ss_pred EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc---------------------------eeEEEe--------
Q 022324 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---------------------------KCVEEY-------- 148 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---------------------------~~~~~~-------- 148 (299)
-.+++|+..|.++.+ +.+ .|++|+.|.+|++||+... ..+..+
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 355889999999999 666 9999999999999997521 000000
Q ss_pred ------------------------cCCCcee-EEEEecCCCE-EE-EEcCCeEEEEecCCce---eeeeccC--C--ccc
Q 022324 149 ------------------------SLPNAAS-LVDFDFDESK-IV-GLIGTRICIWRRNGLR---SVFPSRE--G--TFM 194 (299)
Q Consensus 149 ------------------------~~~~~~~-~~~~~~~~~~-l~-~~~d~~i~v~d~~~~~---~~~~~~~--~--~~~ 194 (299)
++|-..+ +.+|+|..+. ++ ++.||++++||+.+.+ .++.... + ...
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 1233333 3789997765 33 9999999999998754 2332211 1 112
Q ss_pred eeeeeccCCCeEEEecCCCcEEEEEcCCccee---eeccccCC--ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC-ceE
Q 022324 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS---QIIRMHCA--PVTSLSLSED-QLIISGSSLGSIAISGLSSD-QRV 267 (299)
Q Consensus 195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~--~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~ 267 (299)
...+|+++++.+++|..||.|.+|+....... ..-..|.. .|++|.|+++ ++|++-+.|+++++||+++. +++
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccch
Confidence 24589999999999999999999998654322 22235665 8999999999 99999999999999999974 567
Q ss_pred EEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 268 ATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
....+-....+-+.++|||+.+++++|+..+
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~ 431 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAP 431 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEeccccc
Confidence 6666554433678899999999999997543
No 99
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=3e-21 Score=155.59 Aligned_cols=244 Identities=17% Similarity=0.169 Sum_probs=178.4
Q ss_pred HhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEe-
Q 022324 35 IFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQW- 108 (299)
Q Consensus 35 i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~- 108 (299)
+..+-.|+-.+.|++++++..++.+ ++.-|+....+....+.+.+.- +.....+.+.-
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev----------------~k~~~~~~k~~r 198 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV----------------LKSHGNPLKESR 198 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh----------------hhhccCCCCccc
Confidence 5556689999999999999998887 1222333222211111111100 00011111111
Q ss_pred eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-
Q 022324 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR- 183 (299)
Q Consensus 109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~- 183 (299)
++|...|.+++. +++ ||++|+.|..|.||+.++.+.++.+.+|...+. ++|-.....++ ++.|.++++|++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 489999999988 666 999999999999999999999999999977666 99988777777 9999999999998764
Q ss_pred -eeeeccCCccceeeeeccCCCe--EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEe
Q 022324 184 -SVFPSREGTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260 (299)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd 260 (299)
..+.+|.+. +.++...... +.+|+.|.++++|++.. +....+.++.+.+-|++|-.+..+++|+.+|.|.+|+
T Consensus 279 vetlyGHqd~---v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 279 VETLYGHQDG---VLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHHhCCccc---eeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence 344555554 3445444433 55566999999999964 3344566888899999999888899999999999999
Q ss_pred CCCCceEEEeeccCCC----------CcEEEEEccCCCCeEEeeeccc
Q 022324 261 LSSDQRVATLRSTDCT----------GHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 261 ~~~~~~~~~~~~~~~~----------~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+.+.+++.+....++. ..|++++..|...++++||+-+
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G 402 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG 402 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC
Confidence 9998888777543321 1789999999999999999643
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.2e-20 Score=144.35 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=140.4
Q ss_pred eccccCeeEEEe--cCC-EEEEEeCCCcEEEEecCCce----------eEEEe-----cCCCceeE-EEEecCCCE-EE-
Q 022324 109 KAHSVGVDQCRM--KRG-LILTGVGDKVMRLWSLEGYK----------CVEEY-----SLPNAASL-VDFDFDESK-IV- 167 (299)
Q Consensus 109 ~~h~~~i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~----------~~~~~-----~~~~~~~~-~~~~~~~~~-l~- 167 (299)
..|.+.|+++.. ..+ |+++|+.||.|.+||++... .+..+ ..|...+. +.|-|-..- +.
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 679999999988 234 99999999999999997532 11111 13444554 778774443 44
Q ss_pred EEcCCeEEEEecCCceeee-eccCCccceeeeeccCCC---eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC
Q 022324 168 GLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDP---EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243 (299)
Q Consensus 168 ~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~ 243 (299)
++.|++++|||.++.+... ...++.+. ..+++|... .+++|..+-+|++-|+.+|.....+.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VY-shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVY-SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceee-hhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 8999999999999876332 22333322 235666544 378888999999999999999999999999999999999
Q ss_pred C-C-eEEEEeCCCcEEEEeCCCC-ceEEEeeccCC------------CCcEEEEEccCCCCeEEeeec
Q 022324 244 D-Q-LIISGSSLGSIAISGLSSD-QRVATLRSTDC------------TGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 244 ~-~-~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~------------~~~i~~~~~s~~g~~l~s~s~ 296 (299)
. . .|++|+.||.|++||++.. .+...+..|.. .+.|.+++|+.+|.++++++.
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 8 4 6899999999999999864 45555543331 137999999999999998765
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=4.4e-22 Score=156.04 Aligned_cols=247 Identities=13% Similarity=0.108 Sum_probs=178.5
Q ss_pred CCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhcCCCCCCCchhhhhhh
Q 022324 13 PKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLHGFSNTSGSSMRLHLE 87 (299)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~~~~~~~d~~~~~~~~ 87 (299)
.+-+++..+--+.+|+++...++..+..|.+.|+.+.+.. ..+++ +++.|.......+ . ...+.-+.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~-t-----ilg~s~~~ 151 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLH-T-----ILGKSVYL 151 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcce-e-----eecccccc
Confidence 3456778889999999999999999999999999999988 33333 4555653221100 0 00000011
Q ss_pred hhhhccccceeecCcee-----------eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCc
Q 022324 88 ELAMKHHRFALEEGRID-----------IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNA 153 (299)
Q Consensus 88 ~~~~~~~~~~l~~g~~~-----------~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 153 (299)
.+........+++.+.. ++.+.--.+.|.++.| |.+ .|++++.|+.|.+||+.+++++..+...-.
T Consensus 152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR 231 (433)
T KOG0268|consen 152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR 231 (433)
T ss_pred ccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc
Confidence 22222223333444333 4444555667778888 433 899999999999999999999887776655
Q ss_pred eeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCcccee--eeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022324 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKG--LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR 230 (299)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 230 (299)
...++|+|.+-.++ +..|..++.||++.-......+.++...+ +.++|.|+.+++|+.|.+|+||..+.+.....+.
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence 56699999766666 99999999999998776666666666655 3677888899999999999999999776544442
Q ss_pred -ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceE
Q 022324 231 -MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267 (299)
Q Consensus 231 -~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 267 (299)
..-+.|.++.|+-| +++++||.|+.|++|.....+.+
T Consensus 312 tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 312 TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 22356999999999 99999999999999997655443
No 102
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=1.3e-20 Score=158.81 Aligned_cols=184 Identities=16% Similarity=0.178 Sum_probs=153.5
Q ss_pred eeeEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecC
Q 022324 103 IDIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRN 180 (299)
Q Consensus 103 ~~~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~ 180 (299)
.++.++++|+..|.++.. .++.++|||+|.++++|.. +++...+++|...+. +..-|++.++-|+.|.+|++|.-.
T Consensus 92 ~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~ 169 (745)
T KOG0301|consen 92 EPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG 169 (745)
T ss_pred CchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC
Confidence 347788999999999986 5558999999999999965 566777888876665 777777755559999999999987
Q ss_pred CceeeeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022324 181 GLRSVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i 258 (299)
+....+..|...+. .+...+. .+++++.||.|++|++ +++++.++.+|...+.++....+ +.++++++|++++|
T Consensus 170 ~~l~tf~gHtD~VR---gL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 170 TLLKTFSGHTDCVR---GLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRI 245 (745)
T ss_pred chhhhhccchhhee---eeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEE
Confidence 77778888777654 3333333 5899999999999999 68999999999999999996655 99999999999999
Q ss_pred EeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
|+.. ++.+.+..+.. .|+++.+-++|..++.||-
T Consensus 246 W~~~--e~~q~I~lPtt--siWsa~~L~NgDIvvg~SD 279 (745)
T KOG0301|consen 246 WKKD--ECVQVITLPTT--SIWSAKVLLNGDIVVGGSD 279 (745)
T ss_pred eecC--ceEEEEecCcc--ceEEEEEeeCCCEEEeccC
Confidence 9975 88888887776 8999999999998877764
No 103
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=4e-21 Score=148.57 Aligned_cols=226 Identities=15% Similarity=0.207 Sum_probs=165.6
Q ss_pred HhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022324 35 IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG 114 (299)
Q Consensus 35 i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~ 114 (299)
+..+.+|.+.|..++.......+.+ ...|++.++| ++..+. .+.+|.||.+.
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gt----------------ASADhTA~iW--s~Esg~----------CL~~Y~GH~GS 192 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGT----------------ASADHTARIW--SLESGA----------CLATYTGHTGS 192 (481)
T ss_pred hhhhcccccceeeehhhcCCcceee----------------cccccceeEE--eecccc----------ceeeecccccc
Confidence 3345577777766655444443333 3478888888 433222 23466899999
Q ss_pred eeEEEe-cCC-EEEEEeCCCcEEEEecC------C-----c-----------------------------eeEEEecCCC
Q 022324 115 VDQCRM-KRG-LILTGVGDKVMRLWSLE------G-----Y-----------------------------KCVEEYSLPN 152 (299)
Q Consensus 115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~------~-----~-----------------------------~~~~~~~~~~ 152 (299)
|+++.| +.+ ++++++.|++..||... . + .++..+.+|.
T Consensus 193 VNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~ 272 (481)
T KOG0300|consen 193 VNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR 272 (481)
T ss_pred eeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc
Confidence 999999 444 99999999999999721 1 0 1334455666
Q ss_pred ceeE-EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-ceee
Q 022324 153 AASL-VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQ 227 (299)
Q Consensus 153 ~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~ 227 (299)
.++. ..|-..++.++ ++.|.+..+||++++. ..+.+|......+ +-+|....+++.+.|.+.++||.+.. ..+.
T Consensus 273 ~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc-stHptQrLVvTsSrDtTFRLWDFReaI~sV~ 351 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC-STHPTQRLVVTSSRDTTFRLWDFREAIQSVA 351 (481)
T ss_pred cceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc-ccCCcceEEEEeccCceeEeccchhhcceee
Confidence 5555 77888888888 9999999999999986 4566666655533 66677777899999999999999843 3467
Q ss_pred eccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC-ceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022324 228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGHIICLMYPQFLHMLF 292 (299)
Q Consensus 228 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 292 (299)
.|++|.+.|+++.|..+..+++|+.|.+|++||+++. .++.++.... +++.++.+..+..++
T Consensus 352 VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iIA 414 (481)
T KOG0300|consen 352 VFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPIIA 414 (481)
T ss_pred eecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceEE
Confidence 8889999999999998877999999999999999875 4567776554 566666665554444
No 104
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.6e-21 Score=156.19 Aligned_cols=234 Identities=16% Similarity=0.151 Sum_probs=173.0
Q ss_pred hhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCc
Q 022324 23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGR 102 (299)
Q Consensus 23 ~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~ 102 (299)
.+..|+..-......+.--++.|.|++-+|.|.+++. +...-.+|.+.+..+....
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~a------------------g~i~g~lYlWelssG~LL~------ 117 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLA------------------GTISGNLYLWELSSGILLN------ 117 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecCCCceEEEe------------------ecccCcEEEEEeccccHHH------
Confidence 4555554443333344445677888888888888875 1122234444444433333
Q ss_pred eeeEEeeccccCeeEEEec-CC-EEEEEeCCCcEEEEecC---------CceeEEEecCCCceeE-EEEecC--CCEEE-
Q 022324 103 IDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLE---------GYKCVEEYSLPNAASL-VDFDFD--ESKIV- 167 (299)
Q Consensus 103 ~~~~~~~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~~-~~~~~~--~~~l~- 167 (299)
++.+|-.+|+|+.|. |+ +|+|||.||.|.+|.+. +-++.+.+..|.-.+. +...+. ...++
T Consensus 118 ----v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 118 ----VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYT 193 (476)
T ss_pred ----HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEE
Confidence 338999999999994 44 99999999999999864 2356777888875555 666554 34566
Q ss_pred EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc----------------ceeeeccc
Q 022324 168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR----------------KCSQIIRM 231 (299)
Q Consensus 168 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------~~~~~~~~ 231 (299)
++.|.++++||+..+.............++++.|.+..++.|+.+|.|.+.++... ..+..+.+
T Consensus 194 aS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G 273 (476)
T KOG0646|consen 194 ASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG 273 (476)
T ss_pred ecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeecc
Confidence 99999999999999876555544444556788999999999999999998886532 23445557
Q ss_pred cCC--ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022324 232 HCA--PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ 286 (299)
Q Consensus 232 ~~~--~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 286 (299)
|.+ +|+|++++-| .+|++|+.||.+.|||+.+.++++++....+ +|+.+.+.|
T Consensus 274 h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg--pVtnL~i~~ 329 (476)
T KOG0646|consen 274 HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG--PVTNLQINP 329 (476)
T ss_pred ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc--ccceeEeec
Confidence 877 9999999999 9999999999999999999999998875555 899888855
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.85 E-value=4.1e-20 Score=148.84 Aligned_cols=189 Identities=14% Similarity=0.210 Sum_probs=147.8
Q ss_pred eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCce----------eEEEecCCCc-eeEEEEecCCCE-EE-E
Q 022324 105 IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYK----------CVEEYSLPNA-ASLVDFDFDESK-IV-G 168 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~-l~-~ 168 (299)
+..--.|.+.|+.+.+ |.+ .+++++..+.+.|||..+.. +-..+.+|.. ...++|++.... ++ +
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 4444579999999977 544 88899999999999976422 1125566665 566888875543 44 9
Q ss_pred EcCCeEEEEecCCce---------eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcC--CcceeeeccccCCce
Q 022324 169 LIGTRICIWRRNGLR---------SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMY--SRKCSQIIRMHCAPV 236 (299)
Q Consensus 169 ~~d~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~~i 236 (299)
+.|+.|++||+.... ..+..|...+.. ++|++.... ++++++|+.+.|||+| +.++.....+|...|
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD-V~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVED-VAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEV 275 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceeh-hhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCce
Confidence 999999999997532 345666665554 378877766 8899999999999999 455666677999999
Q ss_pred eEEEeCCC--CeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCC-CeEEeeec
Q 022324 237 TSLSLSED--QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFL-HMLFFLCF 296 (299)
Q Consensus 237 ~~~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~s~s~ 296 (299)
+|++|+|- ..||+|+.|++|++||+|+ .+++.++.+|.. .|.++.|+|.. ..||+++.
T Consensus 276 n~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d--ev~~V~WSPh~etvLASSg~ 337 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED--EVFQVEWSPHNETVLASSGT 337 (422)
T ss_pred eEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCc--ceEEEEeCCCCCceeEeccc
Confidence 99999996 7899999999999999997 467999999999 99999999965 45666554
No 106
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.4e-20 Score=153.31 Aligned_cols=181 Identities=14% Similarity=0.157 Sum_probs=153.3
Q ss_pred cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC-CCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee
Q 022324 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV 185 (299)
Q Consensus 111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 185 (299)
+...|+++.| +++ +|+.|..+|.|.|||..+.+.+..+.. |..-+. ++|. +..+. |+.++.|..+|++..+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 3788999999 555 999999999999999999999999988 555444 7776 55666 999999999999987633
Q ss_pred ---eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeC--CCcEEE
Q 022324 186 ---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSS--LGSIAI 258 (299)
Q Consensus 186 ---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~--dg~i~i 258 (299)
+..|...+. .+.|++++.++++|+.|+.+.|||....+++..+..|...|..++|+|- .+||+|+. |++|++
T Consensus 294 ~~~~~~H~qeVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceee-eeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 334444443 5789999999999999999999999888889999999999999999997 78999764 999999
Q ss_pred EeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 259 SGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
||..+++.+..+.... .|.+|.|++..+-|+++--|
T Consensus 373 wn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 373 WNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred EEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCC
Confidence 9999999998887655 79999999998877776544
No 107
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.9e-19 Score=136.34 Aligned_cols=188 Identities=14% Similarity=0.171 Sum_probs=148.9
Q ss_pred EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEc--CCeEEEEecC
Q 022324 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLI--GTRICIWRRN 180 (299)
Q Consensus 107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~--d~~i~v~d~~ 180 (299)
.+....+.|+++.| +++ ++++++.|.++++||..+++.+.++..++..+. ++|....+.++ ++. |.+|+..++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 44556789999999 455 899999999999999999999999998766655 88876666666 666 7899999998
Q ss_pred Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022324 181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (299)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (299)
+.+ ..+.+|...+. .++++|-++.+++++.|++|++||++..++...+.... -..++|+|+ -++|++...+.|+
T Consensus 89 dNkylRYF~GH~~~V~-sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVN-SLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred cCceEEEcCCCCceEE-EEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEE
Confidence 886 56788887766 45999999999999999999999999877766554333 345789999 7788888777999
Q ss_pred EEeCCCC--ceEEEeecc-CCCCcEEEEEccCCCCeEEeeecc
Q 022324 258 ISGLSSD--QRVATLRST-DCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 258 iwd~~~~--~~~~~~~~~-~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+||++.- .+..++... ......+.|.|||||++++.++..
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC
Confidence 9999873 455555443 111279999999999999887643
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.85 E-value=6.9e-21 Score=160.53 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=170.8
Q ss_pred CCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcc
Q 022324 14 KKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH 93 (299)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 93 (299)
+.-.++.+.++..|.......+..+.+|+..|.|+....++. +++ .+-|.+.|+|-. ++
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iS----------------gSWD~TakvW~~----~~ 131 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LIS----------------GSWDSTAKVWRI----GE 131 (745)
T ss_pred ceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEe----------------cccccceEEecc----hh
Confidence 344567888888898888888889999999999998888887 565 346778888822 22
Q ss_pred ccceeecCceeeEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcC
Q 022324 94 HRFALEEGRIDIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIG 171 (299)
Q Consensus 94 ~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d 171 (299)
.... +++|+.+|+++.. +++.++||+.|.+|++|.- ++.++++.+|...+. +++-+++.++.++.|
T Consensus 132 l~~~----------l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsND 199 (745)
T KOG0301|consen 132 LVYS----------LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSND 199 (745)
T ss_pred hhcc----------cCCcchheeeeeecCCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCC
Confidence 2222 4899999999866 7779999999999999964 788999999988887 999888888889999
Q ss_pred CeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEE
Q 022324 172 TRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISG 250 (299)
Q Consensus 172 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 250 (299)
|.|+.|++.+.. ....+|.+... .+.+...+..++++++|+++++|+.. ++.+.+.-....|+++.+-++.-+++|
T Consensus 200 g~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg 276 (745)
T KOG0301|consen 200 GSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVG 276 (745)
T ss_pred ceEEEEeccCceeeeeeccceEEE-EEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEe
Confidence 999999995543 34445554443 33555667779999999999999987 777888655558999998877559999
Q ss_pred eCCCcEEEEeCC
Q 022324 251 SSLGSIAISGLS 262 (299)
Q Consensus 251 ~~dg~i~iwd~~ 262 (299)
++||.||||...
T Consensus 277 ~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 277 GSDGRVRVFTVD 288 (745)
T ss_pred ccCceEEEEEec
Confidence 999999999875
No 109
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.85 E-value=7.7e-20 Score=155.66 Aligned_cols=170 Identities=19% Similarity=0.254 Sum_probs=132.5
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCc-------eeeeecc-----
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGL-------RSVFPSR----- 189 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~-------~~~~~~~----- 189 (299)
++++|...|.+.+||+.+...+.+++.|++.+. ++.+||++.++ ++.|.+|++||+.-. ...+..+
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL 505 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL 505 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE
Confidence 333333333333333333333333344666665 99999999999 999999999997521 1111111
Q ss_pred --CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce
Q 022324 190 --EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR 266 (299)
Q Consensus 190 --~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 266 (299)
+..+ .++.++|++.+++.+--|+++++|-+++-+.--.+.+|.-||.||..+|| ++++|||.|.+|+||-+.=|.|
T Consensus 506 el~ddv-L~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC 584 (888)
T KOG0306|consen 506 ELEDDV-LCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC 584 (888)
T ss_pred eccccE-EEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh
Confidence 1122 24678899999999999999999999999888888899999999999999 9999999999999999999999
Q ss_pred EEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 267 VATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
-+.+-.|.+ .|.++.|-|....++++|-
T Consensus 585 HKS~fAHdD--Svm~V~F~P~~~~FFt~gK 612 (888)
T KOG0306|consen 585 HKSFFAHDD--SVMSVQFLPKTHLFFTCGK 612 (888)
T ss_pred hhhhhcccC--ceeEEEEcccceeEEEecC
Confidence 999999999 8999999999999998874
No 110
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=6.5e-20 Score=161.85 Aligned_cols=184 Identities=16% Similarity=0.113 Sum_probs=150.7
Q ss_pred ccccCeeEEEe-cCC-EEEEEe--CCCcEEEEecCC------------ceeEEEecCCCceeE-EEEecCCCEEE-EEcC
Q 022324 110 AHSVGVDQCRM-KRG-LILTGV--GDKVMRLWSLEG------------YKCVEEYSLPNAASL-VDFDFDESKIV-GLIG 171 (299)
Q Consensus 110 ~h~~~i~~~~~-~~~-~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d 171 (299)
.+...|.++.. |++ .++||+ .||.+.+|+.+. .+.+.+...|...+. +.|++||++|| |+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 34567888988 677 999999 999999998652 223445556655554 88999999999 9999
Q ss_pred CeEEEEecCC-----------c---------eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc
Q 022324 172 TRICIWRRNG-----------L---------RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (299)
Q Consensus 172 ~~i~v~d~~~-----------~---------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 231 (299)
+.|.+|+... + ..++..|.+.+.. ++|+|++.++++++.|++|.+||.++.+.+..+.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D-v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD-VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce-eccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 0 0344556665554 48999999999999999999999999999999999
Q ss_pred cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC----CCcEEEEEccCCCCeEEee
Q 022324 232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~g~~l~s~ 294 (299)
|.+.|..+.|+|- ++||+-+.|++|+||.+.+-...+.+..+.+ ...+..+.|||||++|++.
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 9999999999998 9999999999999999887667777655443 2368899999999999975
No 111
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=1.3e-19 Score=142.89 Aligned_cols=176 Identities=18% Similarity=0.257 Sum_probs=137.3
Q ss_pred ccccCeeEEEe---cCC-EEEEEeCCCcEEEEecCC----------------ceeEEEecCCCc-eeEEEEec--CCCEE
Q 022324 110 AHSVGVDQCRM---KRG-LILTGVGDKVMRLWSLEG----------------YKCVEEYSLPNA-ASLVDFDF--DESKI 166 (299)
Q Consensus 110 ~h~~~i~~~~~---~~~-~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~-~~~~~~~~--~~~~l 166 (299)
.|.+.++.+.. .+. +.++=+..|.|.||++.. .+++.++.+|.. .+.++|+| .|.++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 57777777654 444 888889999999999742 246677777754 45599998 33333
Q ss_pred EEEcCCeEEEEecCCce-----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc---eeeeccccCCcee
Q 022324 167 VGLIGTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK---CSQIIRMHCAPVT 237 (299)
Q Consensus 167 ~~~~d~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i~ 237 (299)
.|..-+.|++|...++. ..+..|...+. -++|+|.... |++|+.||+|+|||++.+. ++.. +.|.+-|+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVE-DLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVE-DLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVN 306 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchh-hhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCcee
Confidence 36667899999988764 33445554443 3588888766 8999999999999999873 3333 68999999
Q ss_pred EEEeCCC-CeEEEEeCCCcEEEEeCCC---CceEEEeeccCCCCcEEEEEccCCCC
Q 022324 238 SLSLSED-QLIISGSSLGSIAISGLSS---DQRVATLRSTDCTGHIICLMYPQFLH 289 (299)
Q Consensus 238 ~~~~~~~-~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~i~~~~~s~~g~ 289 (299)
.|.|+.. .+||+|+.||+++|||+++ ++++.+++.|.. +|+++.|+|...
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~--pItsieW~p~e~ 360 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA--PITSIEWHPHED 360 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC--CeeEEEeccccC
Confidence 9999988 8999999999999999986 678999999998 999999999644
No 112
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.8e-19 Score=136.90 Aligned_cols=231 Identities=12% Similarity=0.129 Sum_probs=164.1
Q ss_pred CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee-eEEeeccccCeeEE
Q 022324 40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID-IDQWKAHSVGVDQC 118 (299)
Q Consensus 40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~~~~~~h~~~i~~~ 118 (299)
+|.++|+|+.|.+.|+.+|+ ...|.++++|.. .++ .|... ...++.|.+.|..+
T Consensus 11 ~h~DlihdVs~D~~GRRmAt----------------CSsDq~vkI~d~---~~~------s~~W~~Ts~Wrah~~Si~rV 65 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMAT----------------CSSDQTVKIWDS---TSD------SGTWSCTSSWRAHDGSIWRV 65 (361)
T ss_pred CCcceeeeeeecccCceeee----------------ccCCCcEEEEec---cCC------CCceEEeeeEEecCCcEEEE
Confidence 79999999999999999998 557888899842 111 22222 45668999999999
Q ss_pred Ee-cCC---EEEEEeCCCcEEEEecCCc---------eeEEEec-CCCceeEEEEecC--CCEEE-EEcCCeEEEEecCC
Q 022324 119 RM-KRG---LILTGVGDKVMRLWSLEGY---------KCVEEYS-LPNAASLVDFDFD--ESKIV-GLIGTRICIWRRNG 181 (299)
Q Consensus 119 ~~-~~~---~l~s~~~dg~i~iwd~~~~---------~~~~~~~-~~~~~~~~~~~~~--~~~l~-~~~d~~i~v~d~~~ 181 (299)
.| +++ .+++++.|++++||.=... ....++. ....+..+.|.|. |-.++ ++.||.++||+...
T Consensus 66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d 145 (361)
T KOG2445|consen 66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD 145 (361)
T ss_pred EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence 99 433 8999999999999975211 1222333 3445666999885 45577 99999999999865
Q ss_pred ce--------eeee----ccC--CccceeeeeccC---CCeEEEecCC-----CcEEEEEcCCc----ceeeeccccCCc
Q 022324 182 LR--------SVFP----SRE--GTFMKGLCMRYF---DPEAVVGCED-----GTARVFDMYSR----KCSQIIRMHCAP 235 (299)
Q Consensus 182 ~~--------~~~~----~~~--~~~~~~~~~~~~---~~~l~s~~~d-----~~i~iwd~~~~----~~~~~~~~~~~~ 235 (299)
.. ..+. .+. .....++.|++. .+.|+.|+.+ +.+.||..... ..+.++..|..+
T Consensus 146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp 225 (361)
T KOG2445|consen 146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP 225 (361)
T ss_pred ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc
Confidence 42 1111 111 112234555543 3447777655 47888876543 245566689999
Q ss_pred eeEEEeCCC-----CeEEEEeCCCcEEEEeCCC--------------------CceEEEeeccCCCCcEEEEEccCCCCe
Q 022324 236 VTSLSLSED-----QLIISGSSLGSIAISGLSS--------------------DQRVATLRSTDCTGHIICLMYPQFLHM 290 (299)
Q Consensus 236 i~~~~~~~~-----~~l~~~~~dg~i~iwd~~~--------------------~~~~~~~~~~~~~~~i~~~~~s~~g~~ 290 (299)
|++++|.|+ .+||+++.|| |+||.+.. -+.+..+..|.. +|+.+.|+-.|..
T Consensus 226 I~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~--~VWrv~wNmtGti 302 (361)
T KOG2445|consen 226 IRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG--EVWRVRWNMTGTI 302 (361)
T ss_pred ceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC--ceEEEEEeeeeeE
Confidence 999999996 4799999999 99999872 123455667776 9999999999999
Q ss_pred EEeeeccc
Q 022324 291 LFFLCFLP 298 (299)
Q Consensus 291 l~s~s~~~ 298 (299)
|++.+.-|
T Consensus 303 LsStGdDG 310 (361)
T KOG2445|consen 303 LSSTGDDG 310 (361)
T ss_pred EeecCCCc
Confidence 99887643
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=4.6e-20 Score=157.42 Aligned_cols=189 Identities=13% Similarity=0.154 Sum_probs=149.9
Q ss_pred eEEeeccccCeeEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCC-CEEE-EEcCCeEEEEe
Q 022324 105 IDQWKAHSVGVDQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDE-SKIV-GLIGTRICIWR 178 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~-~~~d~~i~v~d 178 (299)
+..|..|+-.|+++.| + ..+|++||.||+|++||++..+...++.+....+. +.|+|.. ..++ +...|.+.+||
T Consensus 126 l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWD 205 (839)
T KOG0269|consen 126 LTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWD 205 (839)
T ss_pred hhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEee
Confidence 4567899999999999 3 33999999999999999999998888888766665 9999854 4566 88889999999
Q ss_pred cCCce---eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC--CeEEEEeC
Q 022324 179 RNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED--QLIISGSS 252 (299)
Q Consensus 179 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~--~~l~~~~~ 252 (299)
++.+. ..+..|.+.+. ++.|+|+..+||+|+.|+.|+|||..+.+...... ....++.++.|-|+ ..|++++.
T Consensus 206 lRqp~r~~~k~~AH~GpV~-c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 206 LRQPDRCEKKLTAHNGPVL-CLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred ccCchhHHHHhhcccCceE-EEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc
Confidence 99875 45566777655 56899988889999999999999998655432222 34578999999998 56777764
Q ss_pred --CCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccC-CCCeEEeeec
Q 022324 253 --LGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQ-FLHMLFFLCF 296 (299)
Q Consensus 253 --dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~ 296 (299)
|-.|+|||++..- +..++..|.. .++.++|.. |-..|.++|-
T Consensus 285 v~dtsV~VWDvrRPYIP~~t~~eH~~--~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 285 VVDTSVHVWDVRRPYIPYATFLEHTD--SVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred cccceEEEEeeccccccceeeeccCc--cccceeccCCCceeeEeecC
Confidence 8899999998653 4677888887 789999976 3445666654
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2e-19 Score=151.44 Aligned_cols=227 Identities=13% Similarity=0.119 Sum_probs=180.2
Q ss_pred cchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccc-cCeeEEEe
Q 022324 42 FDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHS-VGVDQCRM 120 (299)
Q Consensus 42 ~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~-~~i~~~~~ 120 (299)
+..|+|+|++++.+.||. ...++.+.+|.. ..+... ..++.++. ..|-+++|
T Consensus 25 Ps~I~slA~s~kS~~lAv----------------sRt~g~IEiwN~--~~~w~~---------~~vi~g~~drsIE~L~W 77 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAV----------------SRTDGNIEIWNL--SNNWFL---------EPVIHGPEDRSIESLAW 77 (691)
T ss_pred ccceEEEEEeccCCceee----------------eccCCcEEEEcc--CCCcee---------eEEEecCCCCceeeEEE
Confidence 467889999999998885 336777888832 332222 34456665 46888999
Q ss_pred c-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeee----ccCCcc
Q 022324 121 K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFP----SREGTF 193 (299)
Q Consensus 121 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~----~~~~~~ 193 (299)
. ++.|++.+.+|.|.-||+.+++....++.....+. ++.+|.+..++ ++.||.++.++...+...+. ..++..
T Consensus 78 ~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRv 157 (691)
T KOG2048|consen 78 AEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRV 157 (691)
T ss_pred ccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceE
Confidence 6 55999999999999999999999999987665554 99999999988 99999888888877764333 333333
Q ss_pred ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--------ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCc
Q 022324 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--------MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ 265 (299)
Q Consensus 194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 265 (299)
. .+.|++++..+++|+.||.|++||..++..+.... ....-|+++.|-.+..|++|.+.|+|.+||...+.
T Consensus 158 L-slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 158 L-SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred E-EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence 3 45788888889999999999999999887765221 12335778888777889999999999999999999
Q ss_pred eEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 266 RVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+++.+..|.. .|.+++.++++.++++++..|
T Consensus 237 LiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 237 LIQSHSCHDA--DVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred hhhhhhhhhc--ceeEEEEcCCCCeEEEccCCC
Confidence 9999999998 899999999999999988654
No 115
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=1.6e-19 Score=142.38 Aligned_cols=195 Identities=15% Similarity=0.152 Sum_probs=148.8
Q ss_pred eeeEEeeccccCeeEEEec---CCEEEEEeCCCcEEEEecCCceeEE---EecCCCceeE-EEEecCCCEE-E-EEcCCe
Q 022324 103 IDIDQWKAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKCVE---EYSLPNAASL-VDFDFDESKI-V-GLIGTR 173 (299)
Q Consensus 103 ~~~~~~~~h~~~i~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~-~~~~~~~~~l-~-~~~d~~ 173 (299)
.++.++.+|...=+.+.|+ .+.|+||.--+.|++|...++.... -+.+|...+- ++|+|..+.+ + |+.||+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence 3478889999999999994 3489999999999999999876432 3445766666 9999987665 4 999999
Q ss_pred EEEEecCCce----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC---cceeeeccccCCceeEEEeCCC--
Q 022324 174 ICIWRRNGLR----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---RKCSQIIRMHCAPVTSLSLSED-- 244 (299)
Q Consensus 174 i~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~~~-- 244 (299)
|+|||++... ...+.|.+.++ ++.|+..-+.|++|++||+++|||+++ ++++.+|+-|..+|+++.|+|.
T Consensus 282 IrIWDiRs~~~~~~~~~kAh~sDVN-VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 282 IRIWDIRSGPKKAAVSTKAHNSDVN-VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred EEEEEecCCCccceeEeeccCCcee-eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC
Confidence 9999999763 23355555444 678888888899999999999999986 5678899999999999999986
Q ss_pred CeEEEEeCCCcEEEEeCCCCc----------------eEEEeeccCCCCcEEEEEccCCC-CeEEeeeccc
Q 022324 245 QLIISGSSLGSIAISGLSSDQ----------------RVATLRSTDCTGHIICLMYPQFL-HMLFFLCFLP 298 (299)
Q Consensus 245 ~~l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~i~~~~~s~~g-~~l~s~s~~~ 298 (299)
..|++++.|.+|.+||+..-. +-+.+-.|.+...+-.+.|++.- -+|++.+.-+
T Consensus 361 s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 361 SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 789999999999999985311 11223334333368888999864 3555554433
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=2.4e-19 Score=137.65 Aligned_cols=228 Identities=14% Similarity=0.113 Sum_probs=163.3
Q ss_pred CccchhhHHHhhh-hHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEE
Q 022324 40 GFFDLVRCSAVCK-SWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQC 118 (299)
Q Consensus 40 ~h~~~v~~~~~~~-~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~ 118 (299)
++.|.|.+++||| .+..++. ..-|+++|+|.. ..+ |...-+....|.++|.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A----------------~SWD~tVR~wev--q~~--------g~~~~ka~~~~~~PvL~v 78 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAA----------------GSWDGTVRIWEV--QNS--------GQLVPKAQQSHDGPVLDV 78 (347)
T ss_pred CcccchheeEeccccCceEEe----------------cccCCceEEEEE--ecC--------CcccchhhhccCCCeEEE
Confidence 6789999999999 4555532 235788888833 221 111223447899999999
Q ss_pred Eec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCC-ceeEEEEecCCC--EEE-EEcCCeEEEEecCCceeeeeccCCc
Q 022324 119 RMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDES--KIV-GLIGTRICIWRRNGLRSVFPSREGT 192 (299)
Q Consensus 119 ~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~--~l~-~~~d~~i~v~d~~~~~~~~~~~~~~ 192 (299)
+|. ++ .+++|+.|+.+++||+.+++... +..|+ ++..+.|-+... .|+ |+.|+++++||.+....+....--.
T Consensus 79 ~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~-v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe 157 (347)
T KOG0647|consen 79 CWSDDGSKVFSGGCDKQAKLWDLASGQVSQ-VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE 157 (347)
T ss_pred EEccCCceEEeeccCCceEEEEccCCCeee-eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc
Confidence 994 44 99999999999999999996554 44454 455588877665 677 9999999999999775433222111
Q ss_pred cceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec--cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC--ceE
Q 022324 193 FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII--RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD--QRV 267 (299)
Q Consensus 193 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--~~~ 267 (299)
.+.+..-..+.++.+..+..|.+|+++++...... ..-.-.+.+++..++ +..+.|+-+|.+.|..+..+ +.-
T Consensus 158 --RvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n 235 (347)
T KOG0647|consen 158 --RVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN 235 (347)
T ss_pred --eeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc
Confidence 13456666777888999999999999865432211 123456889998888 77799999999999988775 445
Q ss_pred EEeeccCC-------CCcEEEEEccCCCCeEEeeec
Q 022324 268 ATLRSTDC-------TGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 268 ~~~~~~~~-------~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.+++.|.. -.+|++++|+|.-..|++++-
T Consensus 236 FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs 271 (347)
T KOG0647|consen 236 FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS 271 (347)
T ss_pred eeEEEeccCCCCCCceEEecceEeecccceEEEecC
Confidence 66666653 136888999997777777654
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.2e-19 Score=144.28 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=141.5
Q ss_pred eccccCeeEEEec---CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCE-EE-EEcCCeEEEEecCCc
Q 022324 109 KAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESK-IV-GLIGTRICIWRRNGL 182 (299)
Q Consensus 109 ~~h~~~i~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-l~-~~~d~~i~v~d~~~~ 182 (299)
.+|++.|..+.|. .+.|++||.|.+|++||+.++++..++..|+..+. +.|+|.... |+ |+.|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 4799999999883 33999999999999999999999999997765555 999997654 55 999999999999953
Q ss_pred e--eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC--CeEEEEeCCCcE
Q 022324 183 R--SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSI 256 (299)
Q Consensus 183 ~--~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i 256 (299)
. ...-...+.+. .+.|.+..+. ++++..||+++-+|+|+. +++.+++.|.++|.++++++. .++++++.|+.+
T Consensus 320 ~~s~~~wk~~g~VE-kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V 398 (463)
T KOG0270|consen 320 SNSGKEWKFDGEVE-KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVV 398 (463)
T ss_pred cccCceEEeccceE-EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceE
Confidence 2 11122223333 3588888777 788899999999999974 889999999999999999987 799999999999
Q ss_pred EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCe-EEeee
Q 022324 257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHM-LFFLC 295 (299)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~-l~s~s 295 (299)
++|++.....-.........+...|+++.|+-.+ |+.|+
T Consensus 399 klw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG 438 (463)
T KOG0270|consen 399 KLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG 438 (463)
T ss_pred EEEeecCCCCcccccccccccceeecccCCCcceEEEecC
Confidence 9999875433211111111125677778876543 44444
No 118
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=5.9e-19 Score=151.84 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=150.7
Q ss_pred cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEe---cCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCceee
Q 022324 113 VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEY---SLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLRSV 185 (299)
Q Consensus 113 ~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~ 185 (299)
..+++++. +.| +.+.|...|+|-+|++++|-....| ..|+..+ .++.+.-++.++ ++.+|.+.+||+.+....
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 45666666 444 8889999999999999999988888 3555444 499988888888 999999999999987633
Q ss_pred eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022324 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 264 (299)
-...-+.....+..+.....++.+.+|-.|+++|..+.+.++.|.+|.+.|++++|+|| ++|++++.|++|++||+.++
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 33333333334455555666888899999999999999999999999999999999999 99999999999999999999
Q ss_pred ceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
.++-.+.... +..++.|+|+|.+||+..
T Consensus 609 ~lID~~~vd~---~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 609 TLIDGLLVDS---PCTSLSFSPNGDFLATVH 636 (910)
T ss_pred ceeeeEecCC---cceeeEECCCCCEEEEEE
Confidence 9998887666 899999999999999875
No 119
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=4e-20 Score=156.77 Aligned_cols=212 Identities=16% Similarity=0.209 Sum_probs=163.5
Q ss_pred hhhhhhhhhccccceeecCcee--eE-----------EeeccccCeeEEEecC----C-EEEEEeCCCcEEEEecC-Cce
Q 022324 83 RLHLEELAMKHHRFALEEGRID--ID-----------QWKAHSVGVDQCRMKR----G-LILTGVGDKVMRLWSLE-GYK 143 (299)
Q Consensus 83 ~~~~~~~~~~~~~~~l~~g~~~--~~-----------~~~~h~~~i~~~~~~~----~-~l~s~~~dg~i~iwd~~-~~~ 143 (299)
|+=++++..+|+++.|+.|..- ++ ...+|...|.|+.++. . +|++++.|.-|+++|+. +..
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 3444455666666666665432 22 2278999999998832 2 89999999999999986 456
Q ss_pred eEEEecCCCceeE-EEEecCC--CEEE-EEcCCeEEEEecCCc--eeeeeccCCc----cceeeeeccCCCeEEEecCCC
Q 022324 144 CVEEYSLPNAASL-VDFDFDE--SKIV-GLIGTRICIWRRNGL--RSVFPSREGT----FMKGLCMRYFDPEAVVGCEDG 213 (299)
Q Consensus 144 ~~~~~~~~~~~~~-~~~~~~~--~~l~-~~~d~~i~v~d~~~~--~~~~~~~~~~----~~~~~~~~~~~~~l~s~~~d~ 213 (299)
+++++..|...+. +.|..++ ..++ ++.|+.|.+--.+.. ...+..+... ...-+++.|...++++++.|.
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence 7788888876655 8887766 5566 778877755433311 1333332221 122367888888899999999
Q ss_pred cEEEEEcCCcceeeecc---ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC
Q 022324 214 TARVFDMYSRKCSQIIR---MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH 289 (299)
Q Consensus 214 ~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~ 289 (299)
.|+|||+.+++..+.|+ .|.+....+...|. .|+++.+.|.+|.++|.-+|+++.++.+|.+ .|+.+.|.+|-+
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE--~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE--AVTGVKFLNDCK 696 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch--heeeeeecccch
Confidence 99999999999999997 46677888889998 9999999999999999999999999999999 999999999999
Q ss_pred eEEeeec
Q 022324 290 MLFFLCF 296 (299)
Q Consensus 290 ~l~s~s~ 296 (299)
.|++.+-
T Consensus 697 HlISvsg 703 (1080)
T KOG1408|consen 697 HLISVSG 703 (1080)
T ss_pred hheeecC
Confidence 9998763
No 120
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=7.4e-20 Score=156.15 Aligned_cols=178 Identities=14% Similarity=0.221 Sum_probs=134.1
Q ss_pred EEEe---cCCEEEEEeCCCcEEEEecCC---ceeEEEecCCCceeE-EEEecCCCE-EE-EEcCCeEEEEecCCcee--e
Q 022324 117 QCRM---KRGLILTGVGDKVMRLWSLEG---YKCVEEYSLPNAASL-VDFDFDESK-IV-GLIGTRICIWRRNGLRS--V 185 (299)
Q Consensus 117 ~~~~---~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~-~~~~~~~~~-l~-~~~d~~i~v~d~~~~~~--~ 185 (299)
.|.| .+++|+|++..|.|.+||+.. .+.+..|..|+..+. ++|++.... |+ |+.||.|+.||++.... .
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 3556 344999999999999999986 556667777765554 999886654 55 99999999999997753 3
Q ss_pred eeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022324 186 FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~ 262 (299)
+......+. -+.|+|..++ ++++.+.|.+.+||++.. ++...+..|.++|.++.|+|+ .+||||+.|+.|+|||..
T Consensus 172 ~~~nSESiR-DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 172 FRSNSESIR-DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred ccccchhhh-ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 333222222 2466666554 999999999999999864 345677799999999999999 999999999999999997
Q ss_pred CCceEEEeeccCCCCcEEEEEccCCCC-eEEeeec
Q 022324 263 SDQRVATLRSTDCTGHIICLMYPQFLH-MLFFLCF 296 (299)
Q Consensus 263 ~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s~ 296 (299)
+++.-.....+... +|.+++|-|... .||++++
T Consensus 251 ~~~~~~~~tInTia-pv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 251 DSRAKPKHTINTIA-PVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred CCCccceeEEeecc-eeeeeeeccCccchhhhhhc
Confidence 65543333223322 899999999765 4666665
No 121
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=1.4e-18 Score=141.79 Aligned_cols=177 Identities=14% Similarity=0.254 Sum_probs=148.0
Q ss_pred eeccccCeeEEEe--cCCEEEEEeCCCcEEEEecCCceeEEEecCC-Ccee-EEEEecCCCEEE--EEcCCeEEEEecCC
Q 022324 108 WKAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAAS-LVDFDFDESKIV--GLIGTRICIWRRNG 181 (299)
Q Consensus 108 ~~~h~~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~--~~~d~~i~v~d~~~ 181 (299)
+++|++.|+++.+ .|.||++++..|.|.|..+.++.....|..+ ...+ .+.+++..+.++ ++.+|.|.+||+.+
T Consensus 117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g 196 (673)
T KOG4378|consen 117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG 196 (673)
T ss_pred ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence 3899999999999 4559999999999999999999888888766 4455 499999988866 88899999999998
Q ss_pred ceeeee---ccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022324 182 LRSVFP---SREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (299)
Q Consensus 182 ~~~~~~---~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (299)
...++. .|..+ ...+||+|.++. |++.+.|.+|.+||.+..+....+ ....+...++|.++ .+|+.|+..|.|
T Consensus 197 ~sp~~~~~~~HsAP-~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 197 MSPIFHASEAHSAP-CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred CCcccchhhhccCC-cCcceecCCccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecCCceE
Confidence 764433 33333 335799998877 788999999999999987777666 55788999999999 899999999999
Q ss_pred EEEeCCC-CceEEEeeccCCCCcEEEEEccCCC
Q 022324 257 AISGLSS-DQRVATLRSTDCTGHIICLMYPQFL 288 (299)
Q Consensus 257 ~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g 288 (299)
..||++. ..++..+..|.. .|++++|-|.-
T Consensus 275 i~YD~R~~k~Pv~v~sah~~--sVt~vafq~s~ 305 (673)
T KOG4378|consen 275 IAYDMRSTKAPVAVRSAHDA--SVTRVAFQPSP 305 (673)
T ss_pred EEEecccCCCCceEeeeccc--ceeEEEeeecc
Confidence 9999986 457888888888 89999998764
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=2.4e-19 Score=146.39 Aligned_cols=182 Identities=15% Similarity=0.181 Sum_probs=144.8
Q ss_pred ccccCeeEEEecC--CEEEEEeCCCcEEEEecCCc---eeEEEec---CCCceeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022324 110 AHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGY---KCVEEYS---LPNAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 110 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~---~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
.|..-|.++..++ .+++||+. |.|+|||+... .++..+. ..+.+.++...||++.|+ |+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 5777777777733 38888886 78999998742 2343333 233445588999999988 8888899999998
Q ss_pred Cceeeeec-cC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022324 181 GLRSVFPS-RE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (299)
Q Consensus 181 ~~~~~~~~-~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (299)
.+...++. .. +.....++++++.+..+++..||.|.|||+.+...++.|++|.+.+.||.++++ ..|-+|+-|.+|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 77533222 11 223345788899998899999999999999999999999999999999999999 889999999999
Q ss_pred EEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 257 AISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 257 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
|.||+++++.++...-.. .|.++..+|++.+|+.|-
T Consensus 576 RcWDlregrqlqqhdF~S---QIfSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSS---QIFSLGYCPTGDWLAVGM 611 (705)
T ss_pred eehhhhhhhhhhhhhhhh---hheecccCCCccceeeec
Confidence 999999998776554443 799999999999999874
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.1e-18 Score=133.52 Aligned_cols=190 Identities=14% Similarity=0.169 Sum_probs=144.8
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE--EEec---CCCceeEEEEecCCCEEE--EEcCCeEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV--EEYS---LPNAASLVDFDFDESKIV--GLIGTRIC 175 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~~~~~~~~~~~~~l~--~~~d~~i~ 175 (299)
+.++++|.+.|++++| +++ +|+|++.|++|++|++++.... +.++ .-+....+.|.||.+-++ .-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 5677999999999999 666 9999999999999999864311 1111 112456799999998766 55566999
Q ss_pred EEecCCce---e--e---ee---ccCCccce--eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC
Q 022324 176 IWRRNGLR---S--V---FP---SREGTFMK--GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242 (299)
Q Consensus 176 v~d~~~~~---~--~---~~---~~~~~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~ 242 (299)
+|.+.... . . .. -+..+... -+...-.+.++++++.|..|.+||++ |+.++.+......-...+++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 99875432 0 0 01 11111111 23556667779999999999999999 99999998777778889999
Q ss_pred CC-CeEEEEeCCCcEEEEeCC---CC-----ceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 243 ED-QLIISGSSLGSIAISGLS---SD-----QRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 243 ~~-~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
|+ +++++++..-.+++|.+- .| ..+..+++|.. .|..++|+++.+.+++.|--
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~s--aV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQS--AVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchh--heeeeeeCCCcceeEEEecC
Confidence 99 999999999999999863 22 34677889988 99999999999999998754
No 124
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=3.3e-18 Score=132.20 Aligned_cols=191 Identities=12% Similarity=0.153 Sum_probs=154.5
Q ss_pred eEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCC--EEE-EEcCCeEEEEecC
Q 022324 105 IDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES--KIV-GLIGTRICIWRRN 180 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~--~l~-~~~d~~i~v~d~~ 180 (299)
+..+..|.++|++++.+..++++|+.|-+|+|||+.+.+.+..+-.|...+. +.|.++-. .|+ |+.||.|.+|+..
T Consensus 36 lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 4456899999999999988999999999999999999988888887766655 99988764 555 9999999999998
Q ss_pred Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc----------------------------
Q 022324 181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR---------------------------- 230 (299)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------- 230 (299)
.-. ..+..|.+.+. -++++|.+...++.+.|+.++.||+-+|+.-....
T Consensus 116 ~W~~~~slK~H~~~Vt-~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~ 194 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVT-DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIY 194 (362)
T ss_pred CeEEeeeecccccccc-eeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEE
Confidence 764 45677777755 45999999999999999999999986654211110
Q ss_pred -----------ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc--cCCCCeEEeeecc
Q 022324 231 -----------MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY--PQFLHMLFFLCFL 297 (299)
Q Consensus 231 -----------~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~--s~~g~~l~s~s~~ 297 (299)
.....+.++.|.....|++|..|+.|.+||.....++..+..|.. .|-++.+ .|++.||+++|..
T Consensus 195 q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 195 QLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred ecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEecCCceEEEEeccC
Confidence 011235666665558899999999999999999999999999998 8999884 4678999998865
Q ss_pred c
Q 022324 298 P 298 (299)
Q Consensus 298 ~ 298 (299)
|
T Consensus 273 G 273 (362)
T KOG0294|consen 273 G 273 (362)
T ss_pred c
Confidence 5
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=7.7e-18 Score=129.74 Aligned_cols=185 Identities=11% Similarity=0.094 Sum_probs=142.7
Q ss_pred ccccCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCcee-ee
Q 022324 110 AHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS-VF 186 (299)
Q Consensus 110 ~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~-~~ 186 (299)
...+.|..+.|. .. .|+.+++||++++||....++...++...+...++|.++...+.|+.||.|+.+|+.++.. .+
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceee
Confidence 446789999994 33 7888889999999999998888888888888889998866666699999999999998864 34
Q ss_pred eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCce
Q 022324 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR 266 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 266 (299)
..|...+. ++...+....+++|+.|++|++||.+.......+.. ...|.++....+ .|++|+.|..+.+||+++.+.
T Consensus 91 gth~~~i~-ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 91 GTHDEGIR-CIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred ccCCCceE-EEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCC-EEEEeecCceEEEEEcccccc
Confidence 44544433 456666677799999999999999998666666643 447888887554 688999999999999998765
Q ss_pred EEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 267 VATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
..+.....-...++++++-|++.-.+++|.-
T Consensus 168 ~~q~reS~lkyqtR~v~~~pn~eGy~~sSie 198 (323)
T KOG1036|consen 168 PFQRRESSLKYQTRCVALVPNGEGYVVSSIE 198 (323)
T ss_pred hhhhccccceeEEEEEEEecCCCceEEEeec
Confidence 4433222211279999999988878877753
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=5.8e-20 Score=155.75 Aligned_cols=187 Identities=18% Similarity=0.282 Sum_probs=163.6
Q ss_pred eeccccCeeEEEe-cC-CEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce
Q 022324 108 WKAHSVGVDQCRM-KR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR 183 (299)
Q Consensus 108 ~~~h~~~i~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~ 183 (299)
+..|...|.++.. .. ..+++|+.|..+-+|.+.....+..+.+|+..+. +.|+++..+|+ |+.+|+|++||+....
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 3578889998877 33 3899999999999999887777778888887776 99999999999 9999999999999765
Q ss_pred --eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022324 184 --SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (299)
Q Consensus 184 --~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd 260 (299)
..+.++...... +.|+|.+.+.++|+.|+.+.+||.+...+...+.+|...+..+.|+|+ ++++.|++|..++|||
T Consensus 104 ~vrtLtgh~~~~~s-v~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 104 IVRTLTGHLLNITS-VDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD 182 (825)
T ss_pred hhhhhhccccCcce-eeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence 445555555543 469999999999999999999999988889999999999999999999 8999999999999999
Q ss_pred CCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 261 LSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+..|+.+..|+.|.. .+..+.|+|..-+|++||.-
T Consensus 183 ~~agk~~~ef~~~e~--~v~sle~hp~e~Lla~Gs~d 217 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHEG--KVQSLEFHPLEVLLAPGSSD 217 (825)
T ss_pred ccccccccccccccc--cccccccCchhhhhccCCCC
Confidence 999999999999998 89999999999888888753
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6e-18 Score=136.95 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=145.4
Q ss_pred cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCc----
Q 022324 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGL---- 182 (299)
Q Consensus 111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~---- 182 (299)
-.++|.++.- +++ +|+.|+-.|.|++|.+.+|.++..+..|-+.+. +.|+.|+.+++ ++.||.|.+|.+..-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 4567899866 677 666666999999999999999999988865554 99999999999 999999999987532
Q ss_pred -------eeeeeccCCcccee-eeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC
Q 022324 183 -------RSVFPSREGTFMKG-LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (299)
Q Consensus 183 -------~~~~~~~~~~~~~~-~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (299)
...+..|.-.+... +.......++++++.|.++++||+..+..+..+ ....++.+++++|. ..+..|+.+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecCCc
Confidence 13333333332221 122223456999999999999999999998888 45778999999998 899999999
Q ss_pred CcEEEEeCCC----------------CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 254 GSIAISGLSS----------------DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 254 g~i~iwd~~~----------------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
|.|.+.++.+ +..+..+.+|.+..+|+|++.+-||..|++|+--
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 9999987743 2245556677664489999999999999999743
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.6e-18 Score=149.33 Aligned_cols=231 Identities=10% Similarity=-0.004 Sum_probs=176.7
Q ss_pred CccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEE
Q 022324 40 GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCR 119 (299)
Q Consensus 40 ~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~ 119 (299)
.|.+..+.+++.+++++|.+ ...|+.++.|..- ..... -.++.-+...|.+++
T Consensus 11 aht~G~t~i~~d~~gefi~t----------------cgsdg~ir~~~~~-sd~e~----------P~ti~~~g~~v~~ia 63 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICT----------------CGSDGDIRKWKTN-SDEEE----------PETIDISGELVSSIA 63 (933)
T ss_pred hccCceEEEEEcCCCCEEEE----------------ecCCCceEEeecC-CcccC----------CchhhccCceeEEEe
Confidence 56666677778888887776 3356666766220 00011 112233777888888
Q ss_pred ecCCEEEEEeCCCcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCc--eeeeeccCCccce
Q 022324 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL--RSVFPSREGTFMK 195 (299)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~--~~~~~~~~~~~~~ 195 (299)
...++|++|+.+++|.+|.+..++.-..+. ..-+...++++.+|++++ |+.|-.|++.+.... +..+..|.+.+.
T Consensus 64 ~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl- 142 (933)
T KOG1274|consen 64 CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL- 142 (933)
T ss_pred ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCcee-
Confidence 877799999999999999998876543222 223455699999999999 889999999998765 467778887766
Q ss_pred eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc--------cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce
Q 022324 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--------HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR 266 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 266 (299)
.+.+.|.+..|++.+.||.|++||+.++.+...+.. ....+..++|+|+ ..++....|+.|++|+....+.
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 457888888899999999999999999877665541 2456788999999 8889999999999999999998
Q ss_pred EEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 267 VATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
...+........+..+.|+|+|+|||++++.+
T Consensus 223 ~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g 254 (933)
T KOG1274|consen 223 QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG 254 (933)
T ss_pred heeecccccccceEEEEEcCCCcEEeeeccCC
Confidence 88887655443699999999999999998754
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.79 E-value=6.3e-18 Score=139.12 Aligned_cols=244 Identities=12% Similarity=0.054 Sum_probs=161.2
Q ss_pred CCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHh-hhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccce
Q 022324 19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAII-NRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFA 97 (299)
Q Consensus 19 ~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~-~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (299)
..+..+..|+.++...+..+..+. .+.+++++|++..++ + ...+..+++| ++...
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~----------------~~~~~~v~~~--d~~~~----- 63 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVC----------------ASDSDTIQVI--DLATG----- 63 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEE----------------ECCCCeEEEE--ECCCC-----
Confidence 345678888887766555554443 366788999987653 3 1133444555 21111
Q ss_pred eecCceeeEEeeccccCeeEEEe-cCC-EE-EEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC-
Q 022324 98 LEEGRIDIDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT- 172 (299)
Q Consensus 98 l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~- 172 (299)
.....+..+.. +..+.+ +++ .+ ++++.|+.+++||+.+.+.+..+..+.....++++|+++.++ +..++
T Consensus 64 -----~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 64 -----EVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred -----cEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCC
Confidence 11222333333 345666 555 45 455678999999999988888777555556699999999988 65554
Q ss_pred eEEEEecCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCCcceeeecccc-------CCceeEEEeCCC
Q 022324 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMH-------CAPVTSLSLSED 244 (299)
Q Consensus 173 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~ 244 (299)
.+.+||..+.........+.....+++++++..++ ++..++.|.+||+++++.+..+..+ ......++|+|+
T Consensus 138 ~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred eEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 57788988765332211112223467889988875 4456899999999998876655321 112356889998
Q ss_pred -CeEE-EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 245 -QLII-SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 245 -~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
++++ +.+.++.+.+||+++++.+..+... . .+.+++|+|+|++|++++
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~--~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTYEVLDYLLVG-Q--RVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEEeC-C--CcceEEECCCCCEEEEEc
Confidence 6644 4455778999999988877665433 3 789999999999998764
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.79 E-value=2.9e-19 Score=145.96 Aligned_cols=259 Identities=11% Similarity=0.074 Sum_probs=194.4
Q ss_pred HHhhccCccchhhHHHhhhhHHHHhh----hhhHHHHHHhhhcCCCCCCCch-hhhhhhhhhhccccceeecCcee--eE
Q 022324 34 MIFSSLGFFDLVRCSAVCKSWNAIIN----RCKLLQLLYCKLHGFSNTSGSS-MRLHLEELAMKHHRFALEEGRID--ID 106 (299)
Q Consensus 34 ~i~~~~~h~~~v~~~~~~~~~~~l~~----~~~~w~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~l~~g~~~--~~ 106 (299)
+....|.|.+.|.++.++..-+.+.| -+++|++--......+..-|.- -..|+++....++++.|..|+.. +.
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastls 490 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLS 490 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceee
Confidence 44566789999999999999999988 4778987433211111112221 23466666777888888777664 33
Q ss_pred Eee--ccc-----------cCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCce-eEEEEecCCCEEE-EE
Q 022324 107 QWK--AHS-----------VGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GL 169 (299)
Q Consensus 107 ~~~--~h~-----------~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~ 169 (299)
+|. ..+ -...+++. +|. ..+++..||.|.|||+.+...++.|++|... .++.++++|..|. |+
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG 570 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG 570 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC
Confidence 331 111 11223444 555 8899999999999999999999999988654 4599999999999 99
Q ss_pred cCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEE
Q 022324 170 IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII 248 (299)
Q Consensus 170 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (299)
-|.+|+-||+++.+...+..-......+..+|.+.+++.|..++.+.+.... +.....+..|..-|.++.|.+- ++++
T Consensus 571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecccCceee
Confidence 9999999999988654433323333345778899999999999999888766 4444566678999999999998 9999
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+.+.|+-+..|...-|..+...+... .|.++..|.|.+|+++||-
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~S---sVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESS---SVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ecCchhhhhhccCccccceeeccccC---cceeeeeccCceEEEecCC
Confidence 99999999999999898777665444 7999999999999999973
No 131
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5e-18 Score=126.85 Aligned_cols=186 Identities=14% Similarity=0.153 Sum_probs=146.4
Q ss_pred eccccCeeEEEe--cCCEEEEEeCCCcEEEEecCCc---eeEEEecCCCceeE-EEEec--CCCEEE-EEcCCeEEEEec
Q 022324 109 KAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASL-VDFDF--DESKIV-GLIGTRICIWRR 179 (299)
Q Consensus 109 ~~h~~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~-~~~~~--~~~~l~-~~~d~~i~v~d~ 179 (299)
..|.+.|..+.. -...|+|++.|++|+|+..+.. +.+.++.+|..++. ++|.. .|.+|+ ++.||.|.+|.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 579999988755 4559999999999999998753 56788899977666 88855 788899 999999999999
Q ss_pred CCce----eeeeccCCccceeeeeccCCC--eEEEecCCCcEEEEEcCCc---ceeeeccccCCceeEEEeCCC------
Q 022324 180 NGLR----SVFPSREGTFMKGLCMRYFDP--EAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED------ 244 (299)
Q Consensus 180 ~~~~----~~~~~~~~~~~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~------ 244 (299)
.+++ .....|...++ .+++.|.+. .|++++.||.|.+.+.++. ........|.-.|++++|.|.
T Consensus 88 ~~g~w~k~~e~~~h~~SVN-sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVN-SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred CCCchhhhhhhhhhcccce-eecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 8875 34455555555 347777654 3899999999999998764 122334578888999999874
Q ss_pred ---------CeEEEEeCCCcEEEEeCCCC--ceEEEeeccCCCCcEEEEEccCCC----CeEEeeecc
Q 022324 245 ---------QLIISGSSLGSIAISGLSSD--QRVATLRSTDCTGHIICLMYPQFL----HMLFFLCFL 297 (299)
Q Consensus 245 ---------~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~g----~~l~s~s~~ 297 (299)
+.|++|+.|..|+||+..++ +.-.++.+|.+ .|+.++|.|.- .++|++|.-
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d--wVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD--WVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch--hhhhhhhccccCCCceeeEEecCC
Confidence 35999999999999999875 34456889998 99999999963 578888754
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=1.9e-17 Score=127.01 Aligned_cols=207 Identities=11% Similarity=0.150 Sum_probs=153.7
Q ss_pred CccchhhHHHhhhh-HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccc---ceeecCcee--eEEeecccc
Q 022324 40 GFFDLVRCSAVCKS-WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHR---FALEEGRID--IDQWKAHSV 113 (299)
Q Consensus 40 ~h~~~v~~~~~~~~-~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~l~~g~~~--~~~~~~h~~ 113 (299)
.|.+.|+.+.+.+. ++++++ ...|+.+-+| ++....+. -.++...+. ...-.+|.-
T Consensus 41 ~HgGsvNsL~id~tegrymlS----------------Ggadgsi~v~--Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky 102 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLS----------------GGADGSIAVF--DLQNATDYEASGLIAKHKCIVAKQHENGHKY 102 (397)
T ss_pred cCCCccceeeeccccceEEee----------------cCCCccEEEE--EeccccchhhccceeheeeeccccCCcccee
Confidence 58888888888654 566665 2245555555 33332211 111111111 122257888
Q ss_pred CeeEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCC---CEEE-EEcCCeEEEEecCCce--e
Q 022324 114 GVDQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE---SKIV-GLIGTRICIWRRNGLR--S 184 (299)
Q Consensus 114 ~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~-~~~d~~i~v~d~~~~~--~ 184 (299)
.|..+.| | .+++.+++.|.++++||.+|.+....|..++.+.+-+++|-. .+++ |..+-.|++.|+..+. .
T Consensus 103 ~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 103 AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred eeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 9999877 4 449999999999999999999999999998888888888743 3566 8888899999999885 6
Q ss_pred eeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-ceeee--------------ccccCCceeEEEeCCC-CeE
Q 022324 185 VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQI--------------IRMHCAPVTSLSLSED-QLI 247 (299)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-~~~~~--------------~~~~~~~i~~~~~~~~-~~l 247 (299)
.+.+|.+.+. .+.|+|...+ |++|+.||.|++||++.. .+... -..|.+.++.++|..+ .++
T Consensus 183 ~LsGHr~~vl-aV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l 261 (397)
T KOG4283|consen 183 TLSGHRDGVL-AVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYL 261 (397)
T ss_pred eeccccCceE-EEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhh
Confidence 7788888766 3488888888 889999999999999853 12111 1267789999999998 999
Q ss_pred EEEeCCCcEEEEeCCCCc
Q 022324 248 ISGSSLGSIAISGLSSDQ 265 (299)
Q Consensus 248 ~~~~~dg~i~iwd~~~~~ 265 (299)
++++.|..+++|+..+|+
T Consensus 262 ~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 262 ASCGTDDRIRVWNMESGR 279 (397)
T ss_pred hhccCccceEEeecccCc
Confidence 999999999999987764
No 133
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.77 E-value=7.2e-18 Score=137.69 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=143.4
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCcee--eeeccCCccceeeee
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCM 199 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~ 199 (299)
|+++|+..+.|+|||++...+.+.+..|...+. +.++....+|+ ++..|.|.+..+.++.. .+....+.....+.+
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~y 172 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRY 172 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeec
Confidence 999999999999999996666667777765554 89999999999 88899999999988753 344444555555677
Q ss_pred ccCCCe-EEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCC
Q 022324 200 RYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDC 275 (299)
Q Consensus 200 ~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 275 (299)
++.... |.+++++|.|.+||+....++..+. .|..+...|+|+|. .+|++.+.|..|.+||.+..+...++...+
T Consensus 173 s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~- 251 (673)
T KOG4378|consen 173 SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH- 251 (673)
T ss_pred ccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC-
Confidence 877776 7789999999999999777766554 89999999999997 789999999999999999888777776665
Q ss_pred CCcEEEEEccCCCCeEEeeeccc
Q 022324 276 TGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 276 ~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
|...++|+++|.+|++|+.-+
T Consensus 252 --Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 252 --PLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred --CcceeeecCCceEEEeecCCc
Confidence 899999999999999998643
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=5.3e-17 Score=131.42 Aligned_cols=201 Identities=11% Similarity=0.115 Sum_probs=157.6
Q ss_pred ceeecCceeeEEee------ccccCeeEEEec-CC-EEEEEeCCCcEEEEecC--CceeEEEecCCCceeE-EEEecCCC
Q 022324 96 FALEEGRIDIDQWK------AHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLE--GYKCVEEYSLPNAASL-VDFDFDES 164 (299)
Q Consensus 96 ~~l~~g~~~~~~~~------~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~-~~~~~~~~ 164 (299)
..|..|.-.++.++ ...+.|+++.|. .. +|++++.||++++|.+. +...++.+.....++. .+|.|+|.
T Consensus 191 ~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~ 270 (514)
T KOG2055|consen 191 KLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGH 270 (514)
T ss_pred ccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCc
Confidence 44555555555553 235789999994 44 99999999999999886 3345666665555554 99999998
Q ss_pred -EEE-EEcCCeEEEEecCCceee----eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022324 165 -KIV-GLIGTRICIWRRNGLRSV----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS 238 (299)
Q Consensus 165 -~l~-~~~d~~i~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~ 238 (299)
.++ ++.....+.||+.+.+.. ..+++......+.+++++++++..+..|.|.+....+++.+..++. .+.|..
T Consensus 271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~ 349 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSD 349 (514)
T ss_pred eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEee
Confidence 566 788889999999877521 2223333333567899999999999999999999999999988854 678999
Q ss_pred EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
++|+.+ +.|++.+.+|.|.+||+++..+++++...... .-++++.+++|.|||+||--|
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng~ylA~GS~~G 409 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNGSYLATGSDSG 409 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCCceEEeccCcc
Confidence 999988 88888888999999999999999999876643 457888899999999998654
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.77 E-value=1.4e-17 Score=136.12 Aligned_cols=185 Identities=17% Similarity=0.174 Sum_probs=140.0
Q ss_pred eEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEE------------------------------------
Q 022324 105 IDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEE------------------------------------ 147 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------------------ 147 (299)
.+....|.+.|.++.. .++.|++|+.|..|..||-. .+.++.
T Consensus 280 ~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred EeEeeecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 3444599999999988 77788899999999999932 111111
Q ss_pred -----ecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEc
Q 022324 148 -----YSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM 220 (299)
Q Consensus 148 -----~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~ 220 (299)
..+|..... ++.+|+..+++ ++.|+.+++|+ ..+..+.........+..++|.+ .++.|...|...+.|.
T Consensus 359 ~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 359 GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDT 435 (626)
T ss_pred CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEec
Confidence 112333333 77788888888 99999999999 33334443333334456888988 8899999999999999
Q ss_pred CCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 221 YSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
++...+..-.. ..++++++|+|+ .+||.|+.|+.|+||-+.. +........+.+. +|+.+.||+|+++|.+-|
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs-~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGS-PITHLDWSSDSQFLVSNS 510 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCc-eeEEeeecCCCceEEecc
Confidence 98666555444 889999999999 9999999999999999875 4455555444443 999999999999998865
No 136
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=4.9e-18 Score=136.68 Aligned_cols=230 Identities=11% Similarity=0.158 Sum_probs=166.3
Q ss_pred CCCCCCCCCCCcchhccCcHHHHHHHhh---------------------ccCccchhhHHHhhhhHHHHhhhhhHHHHHH
Q 022324 10 SPPPKKRSSKPRATIESLNGDIICMIFS---------------------SLGFFDLVRCSAVCKSWNAIINRCKLLQLLY 68 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~---------------------~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~ 68 (299)
..+.-.+-|.+.+.|.+|++.+...++- ..+|++.|..++++..++-++.
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa--------- 260 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA--------- 260 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE---------
Confidence 3444456667889999999876543331 2259999999999999866643
Q ss_pred hhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCC-cee
Q 022324 69 CKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEG-YKC 144 (299)
Q Consensus 69 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~-~~~ 144 (299)
....|.++++| ++..+...+.+ ..|.+.|.++.| +.. .|++|+.|++|.+.|.+. ...
T Consensus 261 ------SgsaD~TV~lW--D~~~g~p~~s~----------~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s 322 (463)
T KOG0270|consen 261 ------SGSADKTVKLW--DVDTGKPKSSI----------THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS 322 (463)
T ss_pred ------ecCCCceEEEE--EcCCCCcceeh----------hhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc
Confidence 14488999999 54444444433 689999999999 433 999999999999999984 223
Q ss_pred EEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCce---eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEE
Q 022324 145 VEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVF 218 (299)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iw 218 (299)
-..++....+-.++|.|.....+ ++.||+++-+|++... .....|.+.+. .++++...+. +++++.|+.+++|
T Consensus 323 ~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS-gl~~n~~~p~~l~t~s~d~~Vklw 401 (463)
T KOG0270|consen 323 GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS-GLSVNIQTPGLLSTASTDKVVKLW 401 (463)
T ss_pred CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc-eEEecCCCCcceeeccccceEEEE
Confidence 34455556666788988665533 8889999999999874 44566777665 4577766666 8899999999999
Q ss_pred EcCCcce--eeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceE
Q 022324 219 DMYSRKC--SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRV 267 (299)
Q Consensus 219 d~~~~~~--~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 267 (299)
++..-.. +..-.-.-+...|.++.|+ -+++.|+..+.++|||+.++..+
T Consensus 402 ~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9875333 2211112234778888888 68899999999999999877544
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3e-18 Score=132.53 Aligned_cols=233 Identities=11% Similarity=0.107 Sum_probs=167.1
Q ss_pred HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeecccc
Q 022324 34 MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113 (299)
Q Consensus 34 ~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~ 113 (299)
++...++|.. -.|+.|++-|.++|. .-.++.+-+| ++..-...+ ++.+|..
T Consensus 16 el~~tld~~~-a~~~~Fs~~G~~lAv----------------Gc~nG~vvI~--D~~T~~iar----------~lsaH~~ 66 (405)
T KOG1273|consen 16 ELTHTLDNPL-AECCQFSRWGDYLAV----------------GCANGRVVIY--DFDTFRIAR----------MLSAHVR 66 (405)
T ss_pred hhceeccCCc-cceEEeccCcceeee----------------eccCCcEEEE--Eccccchhh----------hhhcccc
Confidence 4444555555 678999999999986 1133444445 322222223 3379999
Q ss_pred CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE--EEEEcCCeEEEEecCCceeee-ec
Q 022324 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IVGLIGTRICIWRRNGLRSVF-PS 188 (299)
Q Consensus 114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~d~~i~v~d~~~~~~~~-~~ 188 (299)
+|++++| +++ .|+|+|.|..|++||+..|.+++.++...++....|+|.... ++.-.+..-.+-++..+.... ..
T Consensus 67 pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~ 146 (405)
T KOG1273|consen 67 PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK 146 (405)
T ss_pred ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC
Confidence 9999999 666 999999999999999999999999999999999999985543 335556666666666554222 11
Q ss_pred -cCCccc---eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC-CceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022324 189 -REGTFM---KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 189 -~~~~~~---~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~ 262 (299)
..+... ....+.+.++++++|...|.+.++|..+.+++..++... ..|..+.++.. ++|+..+.|..||.|+++
T Consensus 147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred CCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 112111 122467778899999999999999999999998887555 78999999977 999999999999999986
Q ss_pred C-------Cce--EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 263 S-------DQR--VATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 263 ~-------~~~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
. +++ .+.++.--+..+-.+++|+.+|.|+++|+
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 2 111 12222111111456789999999999987
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=4.1e-17 Score=126.90 Aligned_cols=192 Identities=16% Similarity=0.289 Sum_probs=142.5
Q ss_pred eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEec---CC-CceeEEEEecCCCEEE-EEcCCeEEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LP-NAASLVDFDFDESKIV-GLIGTRICI 176 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~-~~~d~~i~v 176 (299)
.+.+.+|...|+.+.+ |.. +++++|.|.+|++|++++..++..+. +| ..+.+++|+.++.+++ ++.|.++++
T Consensus 128 ~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~ 207 (385)
T KOG1034|consen 128 SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKL 207 (385)
T ss_pred ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEE
Confidence 3455899999999998 555 99999999999999999999998886 45 4566699999999999 999999999
Q ss_pred EecCCce------ee-----------ee----------ccCCccceeeeeccCCCeEEEecCCCcEEEEEcC-Ccc----
Q 022324 177 WRRNGLR------SV-----------FP----------SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRK---- 224 (299)
Q Consensus 177 ~d~~~~~------~~-----------~~----------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~---- 224 (299)
|++..++ .. +. ...-+...+-|+.+.++++++-+.++.|..|... -++
T Consensus 208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~ 287 (385)
T KOG1034|consen 208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHN 287 (385)
T ss_pred EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhc
Confidence 9998432 00 00 1111222244666778889999999999999872 111
Q ss_pred ---------eeeeccccCCceeEEEeCCC---CeEEEEeCCCcEEEEeCCCCce--EEEeeccCCCCcEEEEEccCCCCe
Q 022324 225 ---------CSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSDQR--VATLRSTDCTGHIICLMYPQFLHM 290 (299)
Q Consensus 225 ---------~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~g~~ 290 (299)
.+.++......|+-+.|.-| ++||.|...|.|.+||++..++ ..++..+.....|+..+|+.||..
T Consensus 288 vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~ 367 (385)
T KOG1034|consen 288 VKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSI 367 (385)
T ss_pred cCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcE
Confidence 23334344556777766644 7899999999999999998765 233333333338999999999999
Q ss_pred EEeeec
Q 022324 291 LFFLCF 296 (299)
Q Consensus 291 l~s~s~ 296 (299)
|+..+.
T Consensus 368 lv~vcd 373 (385)
T KOG1034|consen 368 LVLVCD 373 (385)
T ss_pred EEEEeC
Confidence 887653
No 139
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.1e-17 Score=131.50 Aligned_cols=209 Identities=15% Similarity=0.253 Sum_probs=147.7
Q ss_pred hhhhccccceeecCcee--e-------------EEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCcee-----
Q 022324 88 ELAMKHHRFALEEGRID--I-------------DQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKC----- 144 (299)
Q Consensus 88 ~~~~~~~~~~l~~g~~~--~-------------~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~----- 144 (299)
++.|+|....+..++.+ + +.+.--..+|.++.| +++ .+++++....++.||+.+.+.
T Consensus 218 sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~ 297 (514)
T KOG2055|consen 218 SVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP 297 (514)
T ss_pred EEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccC
Confidence 45666666665554443 2 222233456666666 555 677778888888888766432
Q ss_pred ----------------------------------------EEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce
Q 022324 145 ----------------------------------------VEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (299)
Q Consensus 145 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~ 183 (299)
+.++.....+..++|+.+++.|+ ++.+|.|++||++...
T Consensus 298 ~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 298 PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS 377 (514)
T ss_pred CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc
Confidence 22222233334488999998888 8899999999999885
Q ss_pred e--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC------cceeeeccccCCceeEEEeCCC-CeEEEEeC--
Q 022324 184 S--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS------RKCSQIIRMHCAPVTSLSLSED-QLIISGSS-- 252 (299)
Q Consensus 184 ~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-- 252 (299)
. .+....+.....+|.+.++.++++|+..|.|.|||..+ .+++..+..-...|++++|+++ ++||.+|.
T Consensus 378 ~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~ 457 (514)
T KOG2055|consen 378 CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK 457 (514)
T ss_pred eEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence 3 33333333333578889999999999999999999664 3455566556678999999999 88887775
Q ss_pred CCcEEEEeCCCCceEEEeeccCC-CCcEEEEEccCCCCeEEeeec
Q 022324 253 LGSIAISGLSSDQRVATLRSTDC-TGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 253 dg~i~iwd~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+..+++-.+.+......+..... .+.|+||+|+|.|-+||.|.-
T Consensus 458 knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 458 KNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred ccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 77899999988777666654432 137999999999999999864
No 140
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.5e-16 Score=121.75 Aligned_cols=182 Identities=17% Similarity=0.185 Sum_probs=137.0
Q ss_pred ccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCcee-EEEecCC------CceeEEEEec--CCCEEEEEcCCeEEEEe
Q 022324 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC-VEEYSLP------NAASLVDFDF--DESKIVGLIGTRICIWR 178 (299)
Q Consensus 110 ~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~------~~~~~~~~~~--~~~~l~~~~d~~i~v~d 178 (299)
.+-+.|.|+.| |++ .+++.. |..|.+|+++.+.. +..+... .....-.|+| +++.++...|+++..||
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D 199 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWD 199 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEE
Confidence 55668999999 766 666655 89999999987765 4444321 1223367776 78888899999999999
Q ss_pred cCCceeeeeccCCcccee--eeeccCCCe-EEEecCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC--CeEEEEeC
Q 022324 179 RNGLRSVFPSREGTFMKG--LCMRYFDPE-AVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED--QLIISGSS 252 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~ 252 (299)
+++..........+...+ +.++|+.+. |+++++||.|++||.+. ..++.++.+|...|+++.|+|. +++++|+.
T Consensus 200 ~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S 279 (370)
T KOG1007|consen 200 LRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS 279 (370)
T ss_pred ccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC
Confidence 998875555444443333 455555555 89999999999999986 4578889999999999999996 89999999
Q ss_pred CCcEEEEeCCC-----------------------------CceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 253 LGSIAISGLSS-----------------------------DQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 253 dg~i~iwd~~~-----------------------------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
|..|.+|.... ...+.++..|+. .|++++||.-..+++++
T Consensus 280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED--SVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED--SVYALAWSSADPWIFAS 348 (370)
T ss_pred CceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc--ceEEEeeccCCCeeEEE
Confidence 99999996531 113457777888 89999999866665543
No 141
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.7e-17 Score=137.29 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=163.9
Q ss_pred hccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCee
Q 022324 37 SSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVD 116 (299)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~ 116 (299)
++..|.+.++.++|.+..-.+++ ...++.+++| .|...+... ..-...+.+|.+|.++|.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit----------------~sed~~lk~W--nLqk~~~s~--~~~~epi~tfraH~gPVl 348 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLIT----------------ASEDGTLKLW--NLQKAKKSA--EKDVEPILTFRAHEGPVL 348 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEE----------------eccccchhhh--hhcccCCcc--ccceeeeEEEecccCceE
Confidence 34567777777777777666665 3377888888 332222111 111233889999999999
Q ss_pred EEEec-CC-EEEEEeCCCcEEEEecCCc----------eeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCc
Q 022324 117 QCRMK-RG-LILTGVGDKVMRLWSLEGY----------KCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGL 182 (299)
Q Consensus 117 ~~~~~-~~-~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~ 182 (299)
|+.++ ++ ++++|+.||+|+.|++... .....+.+|...+. ++++.....|+ ++.||+++.|+....
T Consensus 349 ~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 349 CVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred EEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 99995 44 9999999999999965311 23446678877775 99998888888 999999999998766
Q ss_pred ee-eeeccCCccceeeeeccCCCe---EEEecCCCcEEEEEcCCcceeeeccc-------cCCceeEEEeCCC-CeEEEE
Q 022324 183 RS-VFPSREGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRM-------HCAPVTSLSLSED-QLIISG 250 (299)
Q Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~---l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~~-~~l~~~ 250 (299)
.. .+........ -+.+.+.+.. .++...-+.-.+++...+..+..+.. ....+..+..+|+ .+.+++
T Consensus 429 ~~~~f~~~~e~g~-Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~ 507 (577)
T KOG0642|consen 429 SPCTFGEPKEHGY-PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA 507 (577)
T ss_pred CccccCCccccCC-cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec
Confidence 43 3333332211 1233333332 22222333333445554444444431 1234677888888 899999
Q ss_pred eCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 251 SSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 251 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
..|+.|+++|..+++.+.....|.. .++++++.|+|-+|++++-
T Consensus 508 hed~~Ir~~dn~~~~~l~s~~a~~~--svtslai~~ng~~l~s~s~ 551 (577)
T KOG0642|consen 508 HEDRSIRFFDNKTGKILHSMVAHKD--SVTSLAIDPNGPYLMSGSH 551 (577)
T ss_pred ccCCceecccccccccchheeeccc--eecceeecCCCceEEeecC
Confidence 9999999999999999999999998 8999999999999999874
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.74 E-value=6.8e-18 Score=136.35 Aligned_cols=243 Identities=15% Similarity=0.121 Sum_probs=166.1
Q ss_pred CcHHHHHHHhhccCccchhhHHHhhhhHH--HHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh-hccccceeecCce
Q 022324 27 LNGDIICMIFSSLGFFDLVRCSAVCKSWN--AIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA-MKHHRFALEEGRI 103 (299)
Q Consensus 27 ~~~~~~~~i~~~~~h~~~v~~~~~~~~~~--~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~l~~g~~ 103 (299)
++...........-+...|+|++|.|.-+ .+|. ...-+.+-+| ++. ..++. .
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~----------------GdK~G~VG~W--n~~~~~~d~-------d 225 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAV----------------GDKGGQVGLW--NFGTQEKDK-------D 225 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEE----------------ccCCCcEEEE--ecCCCCCcc-------C
Confidence 44555555556667888899999998776 3333 1123444455 221 01111 1
Q ss_pred eeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecC--CCceeE-EEEecCCCEEE-EEcCCeEEE
Q 022324 104 DIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASL-VDFDFDESKIV-GLIGTRICI 176 (299)
Q Consensus 104 ~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~-~~~d~~i~v 176 (299)
-+..+..|..+|.++.| |.+ .+++.|.||+|++-|++.+.....+.. .....+ ++|+.+...++ +..=|...+
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~ 305 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNV 305 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEE
Confidence 14556899999999998 444 999999999999999987654333333 333334 77776666555 777679999
Q ss_pred EecCCceee---eeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcce-----eeeccccCCceeEEEeCCC-Ce
Q 022324 177 WRRNGLRSV---FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC-----SQIIRMHCAPVTSLSLSED-QL 246 (299)
Q Consensus 177 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~i~~~~~~~~-~~ 246 (299)
||++++... +..|...+. .++++|..++ +++++.|++++|||++.-.. +..+ .|...|.++.|+|. ..
T Consensus 306 iD~R~~~s~~~~~~lh~kKI~-sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~-~HrrsV~sAyFSPs~gt 383 (498)
T KOG4328|consen 306 IDLRTDGSEYENLRLHKKKIT-SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL-PHRRSVNSAYFSPSGGT 383 (498)
T ss_pred EEeecCCccchhhhhhhcccc-eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc-cccceeeeeEEcCCCCc
Confidence 999987643 334444433 4588888877 89999999999999986322 2333 79999999999998 66
Q ss_pred EEEEeCCCcEEEEeCC----CCceEEEeeccCCC---CcEEEEEccCCCCeEEeeec
Q 022324 247 IISGSSLGSIAISGLS----SDQRVATLRSTDCT---GHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 247 l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~i~~~~~s~~g~~l~s~s~ 296 (299)
|+|.+.|..|+|||.. .-+++.++...... -......|.|+..++++|-+
T Consensus 384 l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 384 LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc
Confidence 9999999999999983 34444444332221 13455689999888888754
No 143
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.1e-16 Score=135.91 Aligned_cols=177 Identities=14% Similarity=0.205 Sum_probs=143.3
Q ss_pred eccccCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCcee
Q 022324 109 KAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRS 184 (299)
Q Consensus 109 ~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~ 184 (299)
.-.+-++.++++. ++ +++.||.|-.|++-+..+......+++|+..+. +.++|++++|+ .+.||.|++||+.++..
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGIL 172 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchh
Confidence 4566789999994 44 999999999999999999999999998876665 99999999999 99999999999998752
Q ss_pred e--ee----cc--C-CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeC
Q 022324 185 V--FP----SR--E-GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSS 252 (299)
Q Consensus 185 ~--~~----~~--~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~ 252 (299)
. +. .. . .......+|+|.+..++....|+.|++|+...++....+. .+...+..++|+|. +|||+++.
T Consensus 173 ~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~ 252 (933)
T KOG1274|consen 173 SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTL 252 (933)
T ss_pred hhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeecc
Confidence 1 11 11 1 2333457899999999999999999999999988877765 34445999999999 99999999
Q ss_pred CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeE
Q 022324 253 LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHML 291 (299)
Q Consensus 253 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 291 (299)
||.|.|||..+-+. |.....|.+++|.|+...+
T Consensus 253 ~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 253 DGQILVWNVDTHER------HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred CCcEEEEecccchh------ccccceeEEEecCCCCCee
Confidence 99999999987221 3222289999999987644
No 144
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.74 E-value=8.4e-18 Score=137.48 Aligned_cols=274 Identities=15% Similarity=0.074 Sum_probs=193.8
Q ss_pred cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhh----hhhHHHHHHhhhc-CCCCCCCchhhhhhh---hhhhc
Q 022324 21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIIN----RCKLLQLLYCKLH-GFSNTSGSSMRLHLE---ELAMK 92 (299)
Q Consensus 21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~----~~~~w~~~~~~~~-~~~~~~d~~~~~~~~---~~~~~ 92 (299)
.-.|.+|+.....-...-..|++.|.++...++|..+-. .+..|+..+.+.. .....+-+.+|.... ++..+
T Consensus 266 ~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vG 345 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVG 345 (626)
T ss_pred CceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEe
Confidence 456778887665533344489999999999999988865 3557997666655 333323333333211 11222
Q ss_pred cccceeecCcee---eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE
Q 022324 93 HHRFALEEGRID---IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV 167 (299)
Q Consensus 93 ~~~~~l~~g~~~---~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 167 (299)
..+.++..|..+ ..+..+|.+..+.++. ++. +++|++.|+.+++|+ ..+++.+.....+..+++|+|.+ .++
T Consensus 346 TtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va 422 (626)
T KOG2106|consen 346 TTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVA 422 (626)
T ss_pred eccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEE
Confidence 333444444433 3445799999999888 444 999999999999999 66777777778888899999999 666
Q ss_pred -EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee-c-cccCCceeEEEeCCC
Q 022324 168 -GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-I-RMHCAPVTSLSLSED 244 (299)
Q Consensus 168 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~-~~~~~~i~~~~~~~~ 244 (299)
|+..|...+.|.++...+.....+....++.++|++.+|+.|+.|+.|++|-+........ . +.+..+|+.+.|++|
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD 502 (626)
T ss_pred EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence 9999999999999976444333355566889999999999999999999999876443222 2 234589999999999
Q ss_pred -CeEEEEeCCCcEEEEeCCCCceEE-----------------EeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 245 -QLIISGSSLGSIAISGLSSDQRVA-----------------TLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~~~~~-----------------~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+++.+.+.|-.|-.|.....+.+. .+.+..+ ..|..++-+.+.+++|+|--++
T Consensus 503 s~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~-t~i~a~~rs~~~~~lA~gdd~g 573 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDG-TDINAVARSHCEKLLASGDDFG 573 (626)
T ss_pred CceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCC-chHHHhhhhhhhhhhhccccCc
Confidence 999999999999999554322111 1112222 2677777788888888876543
No 145
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=9.8e-18 Score=149.06 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=148.6
Q ss_pred eEEeeccccCeeEEEe---cCCEEEEEeCCCcEEEEecCCceeEEEe---cCCCceeEEEEecCCCEEE--EEcCCeEEE
Q 022324 105 IDQWKAHSVGVDQCRM---KRGLILTGVGDKVMRLWSLEGYKCVEEY---SLPNAASLVDFDFDESKIV--GLIGTRICI 176 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~--~~~d~~i~v 176 (299)
+.++..|++.|..+.| .+++|++|+.||.|.|||+...+.-.++ ...+.+.+++|+..-.+++ ++.+|.+.|
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i 188 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI 188 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence 5566899999999999 2349999999999999999875543333 2345666799987666654 788889999
Q ss_pred EecCCceeeeeccCCc---cceeeeeccCCCe-EEEecCCC---cEEEEEcCCc-ceeeeccccCCceeEEEeCCC--Ce
Q 022324 177 WRRNGLRSVFPSREGT---FMKGLCMRYFDPE-AVVGCEDG---TARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QL 246 (299)
Q Consensus 177 ~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~-l~s~~~d~---~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~ 246 (299)
||++..+.++...... ...++.|+|+... ++++++|. .|.+||+|.- ..++++.+|...|.++.|++. .+
T Consensus 189 WDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 189 WDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred ccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchh
Confidence 9999886444332222 2446799999776 66666554 4899999863 467788899999999999974 89
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCC-eEEeeec
Q 022324 247 IISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLH-MLFFLCF 296 (299)
Q Consensus 247 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s~ 296 (299)
+++++.|+.|.+|+.++++.+..+..... .+..+.|.|... .++++++
T Consensus 269 llSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P~~~A~asf 317 (1049)
T KOG0307|consen 269 LLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNPSVMAAASF 317 (1049)
T ss_pred hhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCcchhhhhee
Confidence 99999999999999999999999988666 899999999776 4444444
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.73 E-value=2.4e-15 Score=123.76 Aligned_cols=168 Identities=9% Similarity=0.042 Sum_probs=128.3
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCccceeeeecc
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 201 (299)
.+++++.|+.+++||..+++.+..+..+..+..++|+|+++.++ +..++.|++||..+.+.............+++++
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 82 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP 82 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC
Confidence 68899999999999999999998888776666799999998764 5678999999998775432222222223567888
Q ss_pred CCCeEEE-ecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCC-cEEEEeCCCCceEEEeeccCCCCc
Q 022324 202 FDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG-SIAISGLSSDQRVATLRSTDCTGH 278 (299)
Q Consensus 202 ~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 278 (299)
++..+++ +..++.+++||+++++.+..+.. ...+.+++|+|+ +++++++.++ .+.+||.++++.+..+.... .
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~ 158 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ---R 158 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC---C
Confidence 8887654 45689999999998877776643 344688999999 8888888765 46788998888776654433 4
Q ss_pred EEEEEccCCCCeEEeee
Q 022324 279 IICLMYPQFLHMLFFLC 295 (299)
Q Consensus 279 i~~~~~s~~g~~l~s~s 295 (299)
+.+++|+|+|++|++++
T Consensus 159 ~~~~~~s~dg~~l~~~~ 175 (300)
T TIGR03866 159 PRFAEFTADGKELWVSS 175 (300)
T ss_pred ccEEEECCCCCEEEEEc
Confidence 67899999999886543
No 147
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=3.1e-15 Score=118.25 Aligned_cols=180 Identities=14% Similarity=0.173 Sum_probs=139.3
Q ss_pred eeEEEecCCEEEEEeCCC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceee--eeccC
Q 022324 115 VDQCRMKRGLILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV--FPSRE 190 (299)
Q Consensus 115 i~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~--~~~~~ 190 (299)
|..+-|+..+++..+.+. .+++.+.+....+..+..+.++.++.++. +.|+..-...|+|||+++.+.. +....
T Consensus 49 IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee~IyIydI~~MklLhTI~t~~ 126 (391)
T KOG2110|consen 49 IVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEESIYIYDIKDMKLLHTIETTP 126 (391)
T ss_pred EEEeecccceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcccEEEEecccceeehhhhccC
Confidence 333455666666665554 59999999999898888888888888754 4566555556999999988633 22221
Q ss_pred CccceeeeeccCCC--eEEE--ecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc-EEEEeCCCC
Q 022324 191 GTFMKGLCMRYFDP--EAVV--GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS-IAISGLSSD 264 (299)
Q Consensus 191 ~~~~~~~~~~~~~~--~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~-i~iwd~~~~ 264 (299)
.....+.+++++.. +++- ....|.|.+||..+-+.+..+..|.+++.+++|+++ .+|||+++.|+ |||+.+.+|
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 22233456666654 5543 234688999999999999999999999999999999 99999999997 599999999
Q ss_pred ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+.+.+++.......|.+++|+|++++|++.|-
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999986655447999999999999998874
No 148
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=2.4e-16 Score=125.42 Aligned_cols=228 Identities=11% Similarity=0.060 Sum_probs=161.7
Q ss_pred hccCccchhhHHHhhhhHHHH-hhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccCe
Q 022324 37 SSLGFFDLVRCSAVCKSWNAI-INRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV 115 (299)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~l-~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i 115 (299)
...+|.+.|..++|||-...+ |+ ..+|.++++|.- |++.....-..++..+.||+..|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIAS----------------gSeD~~v~vW~I-----Pe~~l~~~ltepvv~L~gH~rrV 134 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIAS----------------GSEDTKVMVWQI-----PENGLTRDLTEPVVELYGHQRRV 134 (472)
T ss_pred CccCccccccccccCccCCceeec----------------CCCCceEEEEEC-----CCcccccCcccceEEEeecceeE
Confidence 355899999999999976554 54 457888888843 44433333445688899999999
Q ss_pred eEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeee--ecc
Q 022324 116 DQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF--PSR 189 (299)
Q Consensus 116 ~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~--~~~ 189 (299)
..+.| | .+.|++++.|.+|.+||+.+|+.+.++.+++.+.+++|+.+|.+++ ++.|..|+|||.+++..+. ..|
T Consensus 135 g~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 135 GLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred EEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence 99999 3 3389999999999999999999999998777777899999999999 9999999999999987443 356
Q ss_pred CCccceeeeeccCCCeEEEec----CCCcEEEEEcCCcc---eeeeccccCCceeEEEeCCC-C-eEEEEeCCCcEEEEe
Q 022324 190 EGTFMKGLCMRYFDPEAVVGC----EDGTARVFDMYSRK---CSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISG 260 (299)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd 260 (299)
.+....-.-|-.++. +++.+ .+.++-+||..+-+ ...++...+ .|.---|.+| + ..++|-.|+.|+.|.
T Consensus 215 eG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 215 EGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN-GVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred cCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCC-ceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 665544334555555 44433 46789999987643 234443333 3554456777 5 455666799999999
Q ss_pred CCCCce-EEEeeccCCCCcEEEEEccCC
Q 022324 261 LSSDQR-VATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 261 ~~~~~~-~~~~~~~~~~~~i~~~~~s~~ 287 (299)
+....+ ++.+.......+-+.+.|-|.
T Consensus 293 it~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ecCCCceeEEecccccCCcccccccccc
Confidence 976542 332222211115566666664
No 149
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=2.3e-16 Score=120.90 Aligned_cols=185 Identities=11% Similarity=0.090 Sum_probs=134.8
Q ss_pred eccccCeeEEEec---CCEEEEEeCCCcEEEEecCCcee---EEEecCC-CceeEEEEecCCCEE-E-EEcCCeEEEEec
Q 022324 109 KAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKC---VEEYSLP-NAASLVDFDFDESKI-V-GLIGTRICIWRR 179 (299)
Q Consensus 109 ~~h~~~i~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~-~~~~~~~~~~~~~~l-~-~~~d~~i~v~d~ 179 (299)
..+.+++++..|. .+++.+.|-|-+..|||++++.. ...+-.| +++..++|..++..+ + .+.||++++||+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 4577899999983 34999999999999999998733 2333345 455559999877654 4 899999999999
Q ss_pred CCce---eeeeccC-CccceeeeeccCCCe-EEE-ecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC--CeEEEE
Q 022324 180 NGLR---SVFPSRE-GTFMKGLCMRYFDPE-AVV-GCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QLIISG 250 (299)
Q Consensus 180 ~~~~---~~~~~~~-~~~~~~~~~~~~~~~-l~s-~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~l~~~ 250 (299)
+... .+++... ....-.++|+..+++ +++ +.....|.+.|++.. .++..++.|...|+.++|.|. ..|.++
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hicta 306 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTA 306 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeec
Confidence 9765 2333333 222224577777666 444 344567999999864 567888999999999999998 799999
Q ss_pred eCCCcEEEEeCCCCc------eEEEeeccCCCCcEEEEEccC-CCCeEEeeec
Q 022324 251 SSLGSIAISGLSSDQ------RVATLRSTDCTGHIICLMYPQ-FLHMLFFLCF 296 (299)
Q Consensus 251 ~~dg~i~iwd~~~~~------~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~ 296 (299)
+.|..+-+||+.+.- ++-.+. ... .|+.+.|++ .+..++.+.-
T Consensus 307 GDD~qaliWDl~q~~~~~~~dPilay~-a~~--EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 307 GDDCQALIWDLQQMPRENGEDPILAYT-AGG--EVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCcceEEEEecccccccCCCCchhhhh-ccc--eeeeeeecccCCCEEEEEec
Confidence 999999999997532 222222 222 899999996 5667776643
No 150
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.72 E-value=6.6e-17 Score=139.45 Aligned_cols=249 Identities=15% Similarity=0.220 Sum_probs=177.4
Q ss_pred CCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhcccccee
Q 022324 19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFAL 98 (299)
Q Consensus 19 ~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l 98 (299)
.....+++|+..+.+.++++.++.+.|+++.=+|.-+.+|- .-.++++-++ .+.+.+.
T Consensus 179 s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVai----------------G~~~G~Viif--NlK~dki---- 236 (910)
T KOG1539|consen 179 SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAI----------------GLENGTVIIF--NLKFDKI---- 236 (910)
T ss_pred ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEE----------------eccCceEEEE--EcccCcE----
Confidence 34567889999999999999999999999988888777774 1133433333 3333332
Q ss_pred ecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEec-CC-CceeEEEEecCCCEEE-EEcCC
Q 022324 99 EEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS-LP-NAASLVDFDFDESKIV-GLIGT 172 (299)
Q Consensus 99 ~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~-~~~d~ 172 (299)
+.+++...++|+.+.| .|| .+++|+..|.+.+||++..+.+...+ .| +.+....|-+....++ ++.|.
T Consensus 237 ------l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 237 ------LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADN 310 (910)
T ss_pred ------EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCC
Confidence 3344544699999999 455 89999999999999999877766655 44 2333366666666666 66666
Q ss_pred eEEEEecCC-----------------------------------------------------------------------
Q 022324 173 RICIWRRNG----------------------------------------------------------------------- 181 (299)
Q Consensus 173 ~i~v~d~~~----------------------------------------------------------------------- 181 (299)
.+++|=..+
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 555543221
Q ss_pred --------------------------------------------ceeeeecc----CCccceeeeeccCCCeEEEecCCC
Q 022324 182 --------------------------------------------LRSVFPSR----EGTFMKGLCMRYFDPEAVVGCEDG 213 (299)
Q Consensus 182 --------------------------------------------~~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d~ 213 (299)
++..+... ......++|+++.|+..+.|...|
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence 00011000 111122456777777788899999
Q ss_pred cEEEEEcCCcceeeec---cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc------------------------
Q 022324 214 TARVFDMYSRKCSQII---RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ------------------------ 265 (299)
Q Consensus 214 ~i~iwd~~~~~~~~~~---~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~------------------------ 265 (299)
.|-+|++++|-....+ ..|..+|+.++...- +.+++++.+|.+++||..+..
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLA 550 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhh
Confidence 9999999999888777 489999999999866 899999999999999986443
Q ss_pred -----------------eEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 266 -----------------RVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 266 -----------------~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
.++.+.+|.+ .|++++|||||++|+++++-
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f~gh~n--ritd~~FS~DgrWlisasmD 597 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREFWGHGN--RITDMTFSPDGRWLISASMD 597 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHhhcccc--ceeeeEeCCCCcEEEEeecC
Confidence 2233456666 89999999999999999974
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.71 E-value=4.7e-16 Score=125.85 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=141.1
Q ss_pred eEEeeccccCeeEEEe-cCC---EEEEEeCCCcEEEEecCCc----eeEEEecCCCceeE-EEEecCCC-EEE-EEcCCe
Q 022324 105 IDQWKAHSVGVDQCRM-KRG---LILTGVGDKVMRLWSLEGY----KCVEEYSLPNAASL-VDFDFDES-KIV-GLIGTR 173 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~---~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~-~~~~~~~~-~l~-~~~d~~ 173 (299)
...++-+..+|++++| |.. ++++|..-|.|-+||+.+. .-+..+..|+..+. +.|+|.+. .++ .+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 4556789999999999 432 8999999999999999532 23455666766665 99999653 455 999999
Q ss_pred EEEEecCCce--eeeeccCC-ccceeeeeccCCCeEEEecCCCcEEEEEcCCcce-eeeccccCCceeEEEeCCC--CeE
Q 022324 174 ICIWRRNGLR--SVFPSREG-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED--QLI 247 (299)
Q Consensus 174 i~v~d~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~--~~l 247 (299)
|+.-|+++.. .++..... .....+.++..++.++.+..=|...+||.++... ...+..|...|++++++|- .+|
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 9999999874 22222111 1122345666677788888878999999998655 5666788889999999997 799
Q ss_pred EEEeCCCcEEEEeCCCCc--e--EEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 248 ISGSSLGSIAISGLSSDQ--R--VATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 248 ~~~~~dg~i~iwd~~~~~--~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
||++.|++++|||++.-. . +-..-.|.. .|.+..|||+|-.|++.+.
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr--sV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHRR--SVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceecccccc--eeeeeEEcCCCCceEeecc
Confidence 999999999999998632 1 222234555 8999999998777777653
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.71 E-value=5.1e-17 Score=136.33 Aligned_cols=239 Identities=14% Similarity=0.129 Sum_probs=156.8
Q ss_pred CcchhccCcHHHHHHHhh--ccCccchhhHHHhhhhHHHHhh------hhhHHHHHHhhhcCCCCCCCchhhhhhhhhhh
Q 022324 20 PRATIESLNGDIICMIFS--SLGFFDLVRCSAVCKSWNAIIN------RCKLLQLLYCKLHGFSNTSGSSMRLHLEELAM 91 (299)
Q Consensus 20 ~~~~~~~~~~~~~~~i~~--~~~h~~~v~~~~~~~~~~~l~~------~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~ 91 (299)
-+++++.|+.+...++-. +++|+..|.+++|.+....++. .+.+|+..+...... +....+++... ..
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~---e~~~~~~~~~~-n~ 195 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDAL---EEFDNRIYGRH-NT 195 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhH---HHHhhhhhccc-cC
Confidence 578999999998887766 8899999999999998776654 344666644331000 00000111000 00
Q ss_pred ccccceeecCceeeEEeeccccCe----eEEEecCC-EEEEEeC-CCcEEEEecCCceeEEEec--------CC----Cc
Q 022324 92 KHHRFALEEGRIDIDQWKAHSVGV----DQCRMKRG-LILTGVG-DKVMRLWSLEGYKCVEEYS--------LP----NA 153 (299)
Q Consensus 92 ~~~~~~l~~g~~~~~~~~~h~~~i----~~~~~~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~--------~~----~~ 153 (299)
+| .-...-...++..+.|...| +.+.|.|+ .|++++. |+.|+|||+...+.....+ .+ -.
T Consensus 196 ~p--tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 196 AP--TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG 273 (720)
T ss_pred CC--CCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence 00 00000000133345555554 44677666 9999888 9999999998765443222 12 12
Q ss_pred eeEEEEecCCCEEE-EEcCCeEEEEecCCce----eeeeccCCc-cceeeeeccCCCeEEEecCCCcEEEEEcCCcce-e
Q 022324 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLR----SVFPSREGT-FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-S 226 (299)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~----~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~ 226 (299)
.+++..+..|.+++ .+.|+.|++|++.+.. ..+..+... ...-.+.++++.++++|+.|...++|.+.+.+. .
T Consensus 274 ~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred eEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 34466667778777 7889999999998643 222222221 111246789999999999999999999987554 3
Q ss_pred eeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCC
Q 022324 227 QIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 264 (299)
..+.+|...|++++|.|. .-+++++.|..+++|++..+
T Consensus 354 ~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 354 ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 455689999999999986 56888899999999999653
No 153
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.4e-15 Score=113.91 Aligned_cols=179 Identities=16% Similarity=0.192 Sum_probs=129.0
Q ss_pred CceeeEEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCcee------EEEecC-------CCc-eeEEEEecCCCEE
Q 022324 101 GRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC------VEEYSL-------PNA-ASLVDFDFDESKI 166 (299)
Q Consensus 101 g~~~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~-------~~~-~~~~~~~~~~~~l 166 (299)
|...+-..++|.++|+.+.|.+.+|++|+. |.|+=|..+.... +..... +-+ +..+-..|..+-+
T Consensus 51 gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi 129 (325)
T KOG0649|consen 51 GKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI 129 (325)
T ss_pred CCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence 334466668999999999999888888876 9999998754321 111111 112 2347788877776
Q ss_pred E-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc----------C
Q 022324 167 V-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH----------C 233 (299)
Q Consensus 167 ~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~ 233 (299)
+ ++.|+.++-||+++++ ..+.+|..-.- .+......+.+++|++||++++||.++++.++.+... .
T Consensus 130 ~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g 208 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG 208 (325)
T ss_pred EEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence 6 8899999999999885 56666665443 2233344566999999999999999999988777521 2
Q ss_pred CceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022324 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ 286 (299)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 286 (299)
..|-+++.+. .++++|+ ...+.+|.++..++...+.... ++..+.|..
T Consensus 209 ~wigala~~e-dWlvCGg-Gp~lslwhLrsse~t~vfpipa---~v~~v~F~~ 256 (325)
T KOG0649|consen 209 KWIGALAVNE-DWLVCGG-GPKLSLWHLRSSESTCVFPIPA---RVHLVDFVD 256 (325)
T ss_pred ceeEEEeccC-ceEEecC-CCceeEEeccCCCceEEEeccc---ceeEeeeec
Confidence 3466666544 4676665 5669999999999998887665 688888853
No 154
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.69 E-value=1.9e-15 Score=120.41 Aligned_cols=186 Identities=12% Similarity=0.136 Sum_probs=135.8
Q ss_pred EEeeccccCeeEEEe-c--CCEEEEEeCCCcEEEEecCCc-------eeEEEecCCCceeE-EEEecCCCE-EE-EEcCC
Q 022324 106 DQWKAHSVGVDQCRM-K--RGLILTGVGDKVMRLWSLEGY-------KCVEEYSLPNAASL-VDFDFDESK-IV-GLIGT 172 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~-l~-~~~d~ 172 (299)
-.+.||+++|..+.| | |..+++||.|.+|.||.+..+ +++..+.+|...+- ++|+|.... |+ ++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 344799999999999 3 349999999999999998654 45667778876665 999997765 44 89999
Q ss_pred eEEEEecCCceeeeec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCc-eeEEEeCCC-CeEEE
Q 022324 173 RICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP-VTSLSLSED-QLIIS 249 (299)
Q Consensus 173 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~-~~l~~ 249 (299)
+|.+|++.++...+.. |...+ ..++|+.++..+++.+.|++|+|||.++++.+.+-.+|.+. ...+.|-.+ .++-|
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i-~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMV-YSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred eEEEEeccCCceeeecCCCCeE-EEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 9999999999754443 44333 35689999999999999999999999999999887777642 344555556 64444
Q ss_pred Ee---CCCcEEEEeCCCCc---eEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 250 GS---SLGSIAISGLSSDQ---RVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 250 ~~---~dg~i~iwd~~~~~---~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
|- ++..+.+||..+-+ .++++.... .|.---++||...+..++
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSn---Gvl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSN---GVLLPFYDPDTSIVYLCG 282 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCC---ceEEeeecCCCCEEEEEe
Confidence 43 37789999976533 233333332 455445667766666554
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.5e-15 Score=125.57 Aligned_cols=189 Identities=13% Similarity=0.130 Sum_probs=144.5
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCE--EEEEcCCeEEEEecC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IVGLIGTRICIWRRN 180 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~d~~i~v~d~~ 180 (299)
-..|+||++.|.++.. +.+ .|++|+.||+|+||.+.||.|+.+++..+.+.+++|+|.+.. |+++.+..+.+.+..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3466899999999988 555 999999999999999999999999999988888999998875 345555555555432
Q ss_pred Cce---------------------------------------eeeeccCCccceeeeeccCCCeEEEecC---CCcEEEE
Q 022324 181 GLR---------------------------------------SVFPSREGTFMKGLCMRYFDPEAVVGCE---DGTARVF 218 (299)
Q Consensus 181 ~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~iw 218 (299)
-+. ++.-.+...+. .+.|+..|.+|++... ...|.|+
T Consensus 473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~-~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIR-QVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccc-eeeeecCCceEEEeccCCCcceEEEE
Confidence 110 00111111111 3467888888877544 4568899
Q ss_pred EcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
++........|....+.|.++.|+|. .+|++++ ...|+|||+..+++++.+..... .|.+|+.+|.|.-|+.|++.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~k--wiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSK--WISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCe--eeeeeeecCCCCeEEEecCC
Confidence 99877766777666788999999999 7777777 46699999998888888876666 89999999999999999864
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.4e-16 Score=131.58 Aligned_cols=192 Identities=17% Similarity=0.198 Sum_probs=148.3
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEEEEcCCeEEEEe
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIGTRICIWR 178 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~d~~i~v~d 178 (299)
+++.-.|...|..+.| ..| ||++...+ ..|.|+++...+...-|+ .++.+..+.|+|...+++.+....|++||
T Consensus 514 v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYd 593 (733)
T KOG0650|consen 514 VCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYD 593 (733)
T ss_pred eEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEe
Confidence 3444568889999999 344 99887664 478888888766655554 44556679999999999988889999999
Q ss_pred cCCceeeeeccCCc-cceeeeeccCCCeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022324 179 RNGLRSVFPSREGT-FMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (299)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (299)
+..+..+.+...+. ....+++++.|..++.|+.|+.+..+|+.-. ++.+.+..|...+++++|++. .++++|+.||+
T Consensus 594 L~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 594 LSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred hhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 98865443333332 2335789999999999999999999999854 466778889999999999999 99999999999
Q ss_pred EEEEe------CCCC---ceEEEeeccCCC--CcEEEEEccCCCCeEEeeec
Q 022324 256 IAISG------LSSD---QRVATLRSTDCT--GHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 256 i~iwd------~~~~---~~~~~~~~~~~~--~~i~~~~~s~~g~~l~s~s~ 296 (299)
+.|+- +..+ -++..+.+|... ..|..+.|+|...+|++++-
T Consensus 674 v~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA 725 (733)
T KOG0650|consen 674 VIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA 725 (733)
T ss_pred EEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC
Confidence 99984 2222 245677777641 14888899999999998864
No 157
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.69 E-value=4.7e-16 Score=132.47 Aligned_cols=223 Identities=13% Similarity=0.093 Sum_probs=166.0
Q ss_pred CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhh---HHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh
Q 022324 12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKS---WNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE 88 (299)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~---~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~ 88 (299)
.+-.+++--.-+++..++..+.....+..|...|.|+.++.- ..+||+ ...|.-+.++..
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS----------------asrdRlIHV~Dv- 533 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS----------------ASRDRLIHVYDV- 533 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh----------------ccCCceEEEEec-
Confidence 344455556678888888888888888899999999998753 233443 113333333321
Q ss_pred hhhccccceeecCceeeEEeeccccCeeEEEe--cCC--EEEEEeCCCcEEEEecCCceeEEEec------CCCceeEEE
Q 022324 89 LAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM--KRG--LILTGVGDKVMRLWSLEGYKCVEEYS------LPNAASLVD 158 (299)
Q Consensus 89 ~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~--~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~ 158 (299)
......++++.+|...|+++.| .+. .+++++.|+.|.+--.+.......+. .+...+.|+
T Consensus 534 ----------~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 534 ----------KRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred ----------ccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence 1222236778999999999999 332 89999999988653332111111122 223344599
Q ss_pred EecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCc---cceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc
Q 022324 159 FDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGT---FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH 232 (299)
Q Consensus 159 ~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~---~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 232 (299)
+.|..++++ ++.|..|+|||+.+++ +.|+...++ ... +...|.+-++++...|+++.++|..+++++....+|
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK-v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK-VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE-EEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 999999999 9999999999999875 455554433 332 467888999999999999999999999999999999
Q ss_pred CCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022324 233 CAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~ 262 (299)
...|+.+.|.+| +.|++.+.||.|.||.+.
T Consensus 683 sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 683 SEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred chheeeeeecccchhheeecCCceEEEEECc
Confidence 999999999999 999999999999999985
No 158
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=1.7e-15 Score=127.40 Aligned_cols=193 Identities=13% Similarity=0.101 Sum_probs=130.5
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEE--ecCCCceeE-EEEecCCCEEE--EEcCCeEEEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE--YSLPNAASL-VDFDFDESKIV--GLIGTRICIW 177 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~l~--~~~d~~i~v~ 177 (299)
++-+..|...|..+.| +.+ .|++++.|.++++||+++.+++.. +.+|...+. ++|.+.+..++ |+.||.|.+|
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 3445789999999999 655 999999999999999999988876 667765554 99999776654 9999999999
Q ss_pred ecCCce---------eeeeccCC--------------------ccce-eee-eccCCCeEEEecC-CCcEEEEEcCCcce
Q 022324 178 RRNGLR---------SVFPSREG--------------------TFMK-GLC-MRYFDPEAVVGCE-DGTARVFDMYSRKC 225 (299)
Q Consensus 178 d~~~~~---------~~~~~~~~--------------------~~~~-~~~-~~~~~~~l~s~~~-d~~i~iwd~~~~~~ 225 (299)
|++-.. .+...+.+ .+.. +.. +..++..|++++. |+.|++||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 987422 11111111 1111 112 2233445888777 99999999987543
Q ss_pred eeec--------ccc---CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC--ceEEEeeccCCCCcEEEEEccCCCCeE
Q 022324 226 SQII--------RMH---CAPVTSLSLSED-QLIISGSSLGSIAISGLSSD--QRVATLRSTDCTGHIICLMYPQFLHML 291 (299)
Q Consensus 226 ~~~~--------~~~---~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~g~~l 291 (299)
.... ..| ...+.++..+.. .+|++.+.|++|++|++.+- .++..+.++.....-..-..+|++.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 2221 122 234566666654 56666666999999999763 345555554432122334678999999
Q ss_pred Eeeecc
Q 022324 292 FFLCFL 297 (299)
Q Consensus 292 ~s~s~~ 297 (299)
++|++.
T Consensus 333 ~SgSsd 338 (720)
T KOG0321|consen 333 LSGSSD 338 (720)
T ss_pred eccCCC
Confidence 999875
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=115.74 Aligned_cols=190 Identities=12% Similarity=0.159 Sum_probs=136.6
Q ss_pred eEEeeccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEec-CCCceeE-EEEecCCCEEEEEcCCeEEEEecCC
Q 022324 105 IDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASL-VDFDFDESKIVGLIGTRICIWRRNG 181 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~ 181 (299)
+.++++|.+.|+++.| .+++|++|..-|.|++|++++......++ .+...+. +..-|++.+..-+.|..+.+|++..
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccC
Confidence 4566899999999999 45599999999999999999988887777 4444444 7777776555577888888888765
Q ss_pred cee-----------------------------eeec------c-----------------CCccceeeeec--cC-CCe-
Q 022324 182 LRS-----------------------------VFPS------R-----------------EGTFMKGLCMR--YF-DPE- 205 (299)
Q Consensus 182 ~~~-----------------------------~~~~------~-----------------~~~~~~~~~~~--~~-~~~- 205 (299)
... .+.. | .+....++|.. .. +.+
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 110 0000 0 00011123332 11 122
Q ss_pred -EEEecCCCcEEEEEcCCcceeee----------ccccCCc---------------------------------------
Q 022324 206 -AVVGCEDGTARVFDMYSRKCSQI----------IRMHCAP--------------------------------------- 235 (299)
Q Consensus 206 -l~s~~~d~~i~iwd~~~~~~~~~----------~~~~~~~--------------------------------------- 235 (299)
+++|.++|.+.+||+.++..+-. ...|.++
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 67888999999999988632211 1123322
Q ss_pred -------eeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 236 -------VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 236 -------i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
|..+..-|| +.+|+++.|+.||||..++.+++..++.|.. .|++++|+|+-..+|++|.
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn~vAfspd~~lmAaask 313 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVNAVAFSPDCELMAAASK 313 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ceeEEEeCCCCchhhhccC
Confidence 334556678 8999999999999999999999999999998 8999999999999998875
No 160
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=3.9e-17 Score=140.99 Aligned_cols=228 Identities=16% Similarity=0.151 Sum_probs=169.3
Q ss_pred HHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccc
Q 022324 33 CMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHS 112 (299)
Q Consensus 33 ~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~ 112 (299)
+.+..+++|...|.|+.|.+.+.+|++ ..+|.-+|+|.. . ....+ ....||.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iit----------------gsdd~lvKiwS~--e---t~~~l-------As~rGhs 232 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIIT----------------GSDDRLVKIWSM--E---TARCL-------ASCRGHS 232 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEee----------------cCccceeeeeec--c---chhhh-------ccCCCCc
Confidence 356678899999999999999999998 557788888832 2 22222 2338999
Q ss_pred cCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecC-Cceeee--
Q 022324 113 VGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRN-GLRSVF-- 186 (299)
Q Consensus 113 ~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~-~~~~~~-- 186 (299)
+.|+.++.+ ++ ++++++.|..|++|.+.++.++..+.+|.+.+. ++|+|-. ..+.||++++||.+ ......
T Consensus 233 ~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~pr 309 (1113)
T KOG0644|consen 233 GDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPR 309 (1113)
T ss_pred cccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCC
Confidence 999999995 44 899999999999999999999999999987666 9999854 46789999999987 211000
Q ss_pred ---------------e--------ccCC-----ccceeeeeccC-----------CCeEEEecCCCcEEEEEcCCcceee
Q 022324 187 ---------------P--------SREG-----TFMKGLCMRYF-----------DPEAVVGCEDGTARVFDMYSRKCSQ 227 (299)
Q Consensus 187 ---------------~--------~~~~-----~~~~~~~~~~~-----------~~~l~s~~~d~~i~iwd~~~~~~~~ 227 (299)
. .... +...+.++... +...+++-.+-.+.+|++.+|....
T Consensus 310 p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 310 PLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred CCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh
Confidence 0 0000 00000011111 1123334445567889999998888
Q ss_pred eccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022324 228 IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 228 ~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 293 (299)
...+|..++..+.++|- ....+++.||+..|||+-.|-+++.....+. .+...+||++|+.++.
T Consensus 390 ~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~--kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 390 NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG--KLVDGKFSQDGTSIAL 455 (1113)
T ss_pred hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc--eeeccccCCCCceEec
Confidence 88899999999999985 6788899999999999999988877765444 7888899999887765
No 161
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.66 E-value=8.4e-15 Score=114.03 Aligned_cols=174 Identities=19% Similarity=0.160 Sum_probs=136.0
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCC------CceeEEEEecCCCEEEEEcCCeEEEEecCCc-e--e----eeeccC
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP------NAASLVDFDFDESKIVGLIGTRICIWRRNGL-R--S----VFPSRE 190 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~-~--~----~~~~~~ 190 (299)
++++.+.+.-|++||.-+|+....+..- ....+++|+|||..|+++....|++||+..+ . . ......
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence 8999999999999999999988877631 2345699999999999999999999999543 2 1 111111
Q ss_pred C--ccceeeeeccCCC-eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CCcEEEEeCCC-C
Q 022324 191 G--TFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGSIAISGLSS-D 264 (299)
Q Consensus 191 ~--~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~i~iwd~~~-~ 264 (299)
+ .+..+++++|... .++.|+....+-||.-..+.++..+-+|.+.|+.++|+++ +.|++|.. |..|-.||++. .
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 1 2334567777776 4889999999999998888999999899999999999999 88888875 78899999986 4
Q ss_pred ceEEEeeccCC-CCcEEEEEccCCCCeEEeeecc
Q 022324 265 QRVATLRSTDC-TGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 265 ~~~~~~~~~~~-~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+++..+..|.+ .+.-.-....|+|++|++|+--
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTD 318 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCC
Confidence 56777776654 2233345667899999999643
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=6.2e-15 Score=115.43 Aligned_cols=162 Identities=17% Similarity=0.228 Sum_probs=119.4
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEec--CCCEEE-EEcCCeEEEEecCCcee----eeeccCCccce
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDF--DESKIV-GLIGTRICIWRRNGLRS----VFPSREGTFMK 195 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~--~~~~l~-~~~d~~i~v~d~~~~~~----~~~~~~~~~~~ 195 (299)
.++++-..|.|++||..+++.+..+.++...+. +.|.. ....+. ++.||+|++||++.... .+..+.+....
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 688889999999999999999999998877666 78765 344555 99999999999997642 22333322222
Q ss_pred eeeeccCCCeEEEec----CCCcEEEEEcCCcce-eeec-cccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc--
Q 022324 196 GLCMRYFDPEAVVGC----EDGTARVFDMYSRKC-SQII-RMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ-- 265 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-- 265 (299)
+++.+..+..+++|. .+-.+.+||.+..+. +..+ ..|.+-|+++.|+|. ++|++||.||-|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 333333455566654 366799999998765 5544 489999999999997 899999999999999997532
Q ss_pred --eEEEeeccCCCCcEEEEEccCCC
Q 022324 266 --RVATLRSTDCTGHIICLMYPQFL 288 (299)
Q Consensus 266 --~~~~~~~~~~~~~i~~~~~s~~g 288 (299)
++.++. +.. .|..+.|+.++
T Consensus 202 DaL~~viN-~~s--SI~~igw~~~~ 223 (376)
T KOG1188|consen 202 DALLHVIN-HGS--SIHLIGWLSKK 223 (376)
T ss_pred hhHHHhhc-ccc--eeeeeeeecCC
Confidence 233332 222 68889998877
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.65 E-value=5.1e-15 Score=113.51 Aligned_cols=187 Identities=13% Similarity=0.196 Sum_probs=135.4
Q ss_pred eEEeeccccCeeEEEe-cCC--EEEEEeCC-------CcEEEEecCCc---------eeEEEec--CCCceeEEEEecCC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG--LILTGVGD-------KVMRLWSLEGY---------KCVEEYS--LPNAASLVDFDFDE 163 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~--~l~s~~~d-------g~i~iwd~~~~---------~~~~~~~--~~~~~~~~~~~~~~ 163 (299)
.++|..|.+.|+.+.- |-+ .|+|+..+ ..+.||.+... +++..+. ....+.++.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 4556788899999876 433 77776553 24689987532 2333333 23445569999999
Q ss_pred CEEEEEcCCeEEEEecCCceeee---ecc-----CCccceeeeeccC--CCeEEEecCCCcEEEEEcCCcceeeecc-cc
Q 022324 164 SKIVGLIGTRICIWRRNGLRSVF---PSR-----EGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIR-MH 232 (299)
Q Consensus 164 ~~l~~~~d~~i~v~d~~~~~~~~---~~~-----~~~~~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~ 232 (299)
..+++-.|..|.+|++.....+. ... ..... .-.|+|. +..++ ...|+++..||+++.+....+. .|
T Consensus 136 ~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ft-sg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFT-SGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEeccCceEEEEcccCcchheeecccccccccceec-ccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhh
Confidence 99998889999999998764311 111 11111 2357663 33354 4558999999999887766665 78
Q ss_pred CCceeEEEeCCC--CeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCC-CCeEEeee
Q 022324 233 CAPVTSLSLSED--QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQF-LHMLFFLC 295 (299)
Q Consensus 233 ~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~s~s 295 (299)
...+..+.|+|+ .+|++|+.||.|+|||.+. ..+++++.+|.. .|+++.|+|. .+++++||
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH--WvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH--WVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce--EEEEEEecCccceEEEecC
Confidence 889999999999 5799999999999999986 467999999998 9999999995 45556655
No 164
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=2.4e-14 Score=107.41 Aligned_cols=168 Identities=13% Similarity=0.109 Sum_probs=121.7
Q ss_pred EEEEEeCCCcEEEEecCCc----------eeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCcee--------
Q 022324 124 LILTGVGDKVMRLWSLEGY----------KCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRS-------- 184 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~-------- 184 (299)
+|+.|..+|.|.+..+++. ..+...+.|+..+. +.|. ..+|+.+.||.|+-|.-+....
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lw 101 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLW 101 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhh
Confidence 8999999999999987632 23344466665554 8887 4566677779999987654321
Q ss_pred --eeeccCC----ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022324 185 --VFPSREG----TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (299)
Q Consensus 185 --~~~~~~~----~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (299)
....+.+ +....+.+.|..+.++.++.|+.++.||+++|+..+++++|.+.|.++.--.. ..+++|++||+++
T Consensus 102 e~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 102 EVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVR 181 (325)
T ss_pred hhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEE
Confidence 1111111 11224566777777888889999999999999999999999999999988444 6799999999999
Q ss_pred EEeCCCCceEEEeeccCCC--------CcEEEEEccCCCCeEEeee
Q 022324 258 ISGLSSDQRVATLRSTDCT--------GHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~--------~~i~~~~~s~~g~~l~s~s 295 (299)
+||.+++++++.+...... ..|-+++- +..+|++|+
T Consensus 182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg 225 (325)
T KOG0649|consen 182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG 225 (325)
T ss_pred EEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC
Confidence 9999999999888644321 14555555 556777765
No 165
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=6e-15 Score=118.44 Aligned_cols=178 Identities=17% Similarity=0.168 Sum_probs=123.4
Q ss_pred eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeecc-C
Q 022324 116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR-E 190 (299)
Q Consensus 116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~-~ 190 (299)
-+++| .++ .+++|+.||++|+|+......+.... .|..+-.++|+||++.|+ .+.| ...||+.+++....... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 45677 454 99999999999999977666555554 445555699999999999 7777 99999999874222111 1
Q ss_pred C--ccceeeeeccCC---Ce--EEEecCCCcEEEEEcCCcce---e--eeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022324 191 G--TFMKGLCMRYFD---PE--AVVGCEDGTARVFDMYSRKC---S--QIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (299)
Q Consensus 191 ~--~~~~~~~~~~~~---~~--l~s~~~d~~i~iwd~~~~~~---~--~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (299)
+ .......+..++ .. ++.....+.|+.||+...+- + .........|++++++++ ++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 1 111112333333 12 23334456677766553322 1 111123446999999999 9999999999999
Q ss_pred EEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 258 ISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
|++..+.++++..+..+.. .|+.+.|+|+.+++++-|
T Consensus 307 i~~~~~lq~~~~vk~aH~~-~VT~ltF~Pdsr~~~svS 343 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLG-FVTGLTFSPDSRYLASVS 343 (398)
T ss_pred EEEeceeeeeEeehhhhee-eeeeEEEcCCcCcccccc
Confidence 9999998888887665544 899999999999888644
No 166
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3.8e-15 Score=123.49 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=118.3
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec-CCC-ceeEEEEecC--CCEEE-EEcCCeEEEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPN-AASLVDFDFD--ESKIV-GLIGTRICIW 177 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~-~~~~~~~~~~--~~~l~-~~~d~~i~v~ 177 (299)
.+.+.||++.|+|+.| .++ +|++|+.|-.+.|||.-..|++..+. +|. .+.++.|-|. .++++ |..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3455899999999999 556 99999999999999999889888887 454 4556888773 44566 9999999999
Q ss_pred ecCCce------------eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCccee-------e---eccccCC
Q 022324 178 RRNGLR------------SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCS-------Q---IIRMHCA 234 (299)
Q Consensus 178 d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~-------~---~~~~~~~ 234 (299)
|+...+ ..+..|...+. -++..+.++. +.++++||+|+-+|++..... . .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVK-ria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVK-RIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhh-heecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 998521 22333444333 3577888866 889999999999999863211 1 1112223
Q ss_pred ceeEEEeCCC--CeEEEEeCCCcEEEEeCC
Q 022324 235 PVTSLSLSED--QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 235 ~i~~~~~~~~--~~l~~~~~dg~i~iwd~~ 262 (299)
...++.++|. .+|++|+.|-..++||.+
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 5678999987 799999999999999953
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=5.1e-15 Score=122.38 Aligned_cols=176 Identities=15% Similarity=0.096 Sum_probs=136.5
Q ss_pred EEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEe-cCCCceeEEEEecCCCEEEEEcCCeEEEEecCCc
Q 022324 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEY-SLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL 182 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 182 (299)
+...+|.++|.+-.| +++ -|+|++.||.|++|. ++|-...++ +...++.+++|.|+.+.++.+..+.+.+=.+.-.
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n 176 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAAN 176 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccc
Confidence 444789999999999 677 899999999999997 445443333 3456677799999999999778888877776644
Q ss_pred e--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEe
Q 022324 183 R--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260 (299)
Q Consensus 183 ~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd 260 (299)
. .....|.+-+. .+.|++.++.+++|++|-..++||.. |..+..-..|..+|++++|+|++.++.++. .+++
T Consensus 177 ~k~i~WkAHDGiiL-~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R--- 250 (737)
T KOG1524|consen 177 SKIIRWRAHDGLVL-SLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPEKDYLLWSY-NTAR--- 250 (737)
T ss_pred cceeEEeccCcEEE-EeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccccceeeeee-eeee---
Confidence 3 44566776655 45888888999999999999999977 788888889999999999999966666664 2333
Q ss_pred CCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 261 LSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
+.....+ .|..++||+||..+++|+-.+
T Consensus 251 ---------~~~p~~G-SifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 251 ---------FSSPRVG-SIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred ---------ecCCCcc-ceEEEEEcCCCceeeccccCc
Confidence 2222222 899999999999999887554
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.6e-13 Score=115.14 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=139.6
Q ss_pred eeccccCeeEEEec--CCEEEEEeCCCcEEEEecCCcee-EEEecCCC-cee-EEEEecCCCEEEEEcCCeEEEEecCCc
Q 022324 108 WKAHSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYKC-VEEYSLPN-AAS-LVDFDFDESKIVGLIGTRICIWRRNGL 182 (299)
Q Consensus 108 ~~~h~~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~l~~~~d~~i~v~d~~~~ 182 (299)
+.--..+|.++++. .+.||.+-.||.|-+|++..+=. ...+.++. ..+ .++|.+.++++..+.+|.|..||+.+.
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC
Confidence 34556789999993 44999999999999999986533 34455443 333 399997777777999999999999987
Q ss_pred eeee-eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee--eccccCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022324 183 RSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258 (299)
Q Consensus 183 ~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i 258 (299)
+..+ ....+...+.++.++.+..++.|++||.+..++...++... .+....+.|.++.|+|+ ..+++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 5333 33344455677999999999999999988888887776643 33355689999999999 77999999999999
Q ss_pred EeCCCCceEEEee-----ccC-CCCcEEEEEccCCCCeEEeee
Q 022324 259 SGLSSDQRVATLR-----STD-CTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 259 wd~~~~~~~~~~~-----~~~-~~~~i~~~~~s~~g~~l~s~s 295 (299)
||...+..+.... ... ...-|+++.|-.++. +++|.
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgD 222 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGD 222 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEec
Confidence 9999988766221 111 112688999887764 44443
No 169
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.5e-13 Score=106.41 Aligned_cols=187 Identities=14% Similarity=0.181 Sum_probs=129.6
Q ss_pred eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC----ceeEEEecCCCcee-EEEEec--CCCEEE-EEcCCeEEEEe
Q 022324 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG----YKCVEEYSLPNAAS-LVDFDF--DESKIV-GLIGTRICIWR 178 (299)
Q Consensus 109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~-~~~~~~--~~~~l~-~~~d~~i~v~d 178 (299)
.+|.+-|+++.| ..| .+++|+.|++++|||... ..+....+.|+..+ .+.|.+ -|+.++ ++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 579999999999 444 999999999999999643 34666777776555 488844 467788 99999999998
Q ss_pred cCCce--------eeeeccCCcccee--eeeccC--CCeEEEecCCCcEEEEEcCCc------ceeeecc-------ccC
Q 022324 179 RNGLR--------SVFPSREGTFMKG--LCMRYF--DPEAVVGCEDGTARVFDMYSR------KCSQIIR-------MHC 233 (299)
Q Consensus 179 ~~~~~--------~~~~~~~~~~~~~--~~~~~~--~~~l~s~~~d~~i~iwd~~~~------~~~~~~~-------~~~ 233 (299)
-.... ............+ ++|.|. +-.+++++.||.++||+...- ....+++ .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 63211 1111111222223 244444 334899999999999987543 2233332 366
Q ss_pred CceeEEEeCCC----CeEEEEeCC-----CcEEEEeCCCC----ceEEEeeccCCCCcEEEEEccCC----CCeEEeeec
Q 022324 234 APVTSLSLSED----QLIISGSSL-----GSIAISGLSSD----QRVATLRSTDCTGHIICLMYPQF----LHMLFFLCF 296 (299)
Q Consensus 234 ~~i~~~~~~~~----~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~~~~~~~i~~~~~s~~----g~~l~s~s~ 296 (299)
.+..|+.|+|. .+||+|+.+ +.++||....+ ..+.++..+.. +|+.++|.|+ -..||+++-
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d--pI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD--PIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC--cceeeeeccccCCceeeEEEeec
Confidence 77899999985 478887765 47899987653 24566777777 9999999996 346777664
Q ss_pred c
Q 022324 297 L 297 (299)
Q Consensus 297 ~ 297 (299)
-
T Consensus 248 D 248 (361)
T KOG2445|consen 248 D 248 (361)
T ss_pred C
Confidence 3
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.61 E-value=5.1e-14 Score=119.49 Aligned_cols=209 Identities=17% Similarity=0.175 Sum_probs=151.8
Q ss_pred hhhhhhcccccee--ecCce----------eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC-c-------e
Q 022324 86 LEELAMKHHRFAL--EEGRI----------DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-Y-------K 143 (299)
Q Consensus 86 ~~~~~~~~~~~~l--~~g~~----------~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~-------~ 143 (299)
+.++.+.|++..+ +.|.. .++++++|.+.|+|++| .++ .+++|+.|..|.+|+.+- | .
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D 94 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHND 94 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCC
Confidence 3477888888433 23322 17888999999999999 566 999999999999998642 1 1
Q ss_pred eEEEec------------------------------CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccCC
Q 022324 144 CVEEYS------------------------------LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREG 191 (299)
Q Consensus 144 ~~~~~~------------------------------~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~ 191 (299)
.++.+. ....+..++|..||.+++ |-.+|+|.+-+-.+.. ..+..+.+
T Consensus 95 ~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg 174 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGG 174 (1081)
T ss_pred eeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCC
Confidence 111111 011234488999999999 9999999998766554 33444333
Q ss_pred c--cceeeeeccCCCe-----EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022324 192 T--FMKGLCMRYFDPE-----AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 192 ~--~~~~~~~~~~~~~-----l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 263 (299)
. ..+.++++|.... +++.....++.+|.+. |+.+..-+.-.-...|+.+.++ .+++.|+.|+.+++|-. .
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~ 252 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-D 252 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-c
Confidence 3 3345677776433 7778888888888876 6665544444555788999998 99999999999999985 5
Q ss_pred CceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 264 DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 264 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
|-.+.++..... .|+.++..|++++++.|+.-+
T Consensus 253 GvrLGTvg~~D~--WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 253 GVRLGTVGEQDS--WIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred CeEEeeccccce--eEEEEEEccCCceEEEEEccC
Confidence 777888866555 999999999999999998643
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=2.9e-14 Score=114.04 Aligned_cols=183 Identities=17% Similarity=0.172 Sum_probs=137.7
Q ss_pred ccCeeEEEecCC---EEEEEeCCCcEEEEecCCce---------eEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEE
Q 022324 112 SVGVDQCRMKRG---LILTGVGDKVMRLWSLEGYK---------CVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIW 177 (299)
Q Consensus 112 ~~~i~~~~~~~~---~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~ 177 (299)
..+|..+.|..+ .|+||+.|..|++|.++.+. ....+..|...+. +.|+|+|.+++ |+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 458889988322 89999999999999876432 2334456665555 99999999999 8999999999
Q ss_pred ecC--------C-----ce-----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEE
Q 022324 178 RRN--------G-----LR-----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239 (299)
Q Consensus 178 d~~--------~-----~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~ 239 (299)
... + .+ .+...|...+. -++|.+++..+++++.|+.+++||+..|..+..+..|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy-dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY-DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchh-hhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 876 2 10 12222333333 25899999999999999999999999999999999999999999
Q ss_pred EeCCC-CeEEEEeCCCcEEEEeCCCCceEEEee---------------------ccCCCCcEEEEEccCCCCeEEeee
Q 022324 240 SLSED-QLIISGSSLGSIAISGLSSDQRVATLR---------------------STDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 240 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
+|.|- +++++-+.|...+.+++...+.++... ........+.++|+|+|.+|++.+
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 99998 999999999988887775433322221 111112456789999999988743
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.3e-13 Score=107.18 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=127.3
Q ss_pred eeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccC
Q 022324 115 VDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE 190 (299)
Q Consensus 115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 190 (299)
-.|+.| +.| +|+.|..||.|.|||+.|...-..+..|-..++ ++|+++|+.|+ ++.|..|.+||+..+.......-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 667888 555 999999999999999999888888888865554 99999999999 99999999999998763333222
Q ss_pred CccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc--eeeecc-c-cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022324 191 GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK--CSQIIR-M-HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 191 ~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~--~~~~~~-~-~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 264 (299)
........++|.... .++.-.+..-.+.++..++ .+..-. + -+....+..|.+. +++++|...|.+.++|..+.
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~ 185 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL 185 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence 222223356666555 2222223333344444311 111110 0 0111223356676 99999999999999999999
Q ss_pred ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+++..++..... .|.++.|+..|++|+..+.
T Consensus 186 e~vas~rits~~-~IK~I~~s~~g~~liiNts 216 (405)
T KOG1273|consen 186 ECVASFRITSVQ-AIKQIIVSRKGRFLIINTS 216 (405)
T ss_pred eeeeeeeechhe-eeeEEEEeccCcEEEEecC
Confidence 999998877632 8999999999999987653
No 173
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=7e-16 Score=127.92 Aligned_cols=234 Identities=16% Similarity=0.099 Sum_probs=161.0
Q ss_pred CCcchhccCcHH--------HHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhh
Q 022324 19 KPRATIESLNGD--------IICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELA 90 (299)
Q Consensus 19 ~~~~~~~~~~~~--------~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (299)
..+..|++|+++ ..+.+++|.+|.+.|.|+++.+++..+.+ ..-|++++.|.....
T Consensus 313 sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ys----------------gg~Dg~I~~w~~p~n 376 (577)
T KOG0642|consen 313 SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYS----------------GGIDGTIRCWNLPPN 376 (577)
T ss_pred ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEe----------------eccCceeeeeccCCC
Confidence 356778888872 33478889999999999999999999887 235666777733212
Q ss_pred hccccceeecCceeeEEeeccccCeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEec---CCCceeEEEEecCCCE
Q 022324 91 MKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESK 165 (299)
Q Consensus 91 ~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 165 (299)
..|+... ....-..++.||++.|+.++++.. .|++++.||++++|+.....+ .++. .+....++++... .
T Consensus 377 ~dp~ds~--dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss--~ 451 (577)
T KOG0642|consen 377 QDPDDSY--DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS--R 451 (577)
T ss_pred CCccccc--CcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc--h
Confidence 2221110 001113456899999999999433 899999999999999876665 3343 2333444555332 2
Q ss_pred EE-EEcCCeEEEEec---CCce--eeeeccC-------CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc
Q 022324 166 IV-GLIGTRICIWRR---NGLR--SVFPSRE-------GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH 232 (299)
Q Consensus 166 l~-~~~d~~i~v~d~---~~~~--~~~~~~~-------~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 232 (299)
++ ...+.....+++ .... .++.... .... .+...+..+..+++..|+.|+++|..+++++.....|
T Consensus 452 ~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in-~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~ 530 (577)
T KOG0642|consen 452 PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN-KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH 530 (577)
T ss_pred hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc-eEEecCCCCeeEecccCCceecccccccccchheeec
Confidence 22 233333333333 3222 1221111 1112 3466777788999999999999999999999999999
Q ss_pred CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022324 233 CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
...++++++.|+ -+|++++.|+.+++|.+....++.....|.
T Consensus 531 ~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 531 KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999999999999 899999999999999998777776665554
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.2e-13 Score=110.33 Aligned_cols=238 Identities=13% Similarity=0.099 Sum_probs=164.4
Q ss_pred HHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEe-eccc
Q 022324 34 MIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQW-KAHS 112 (299)
Q Consensus 34 ~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~h~ 112 (299)
+....++|.+.|+++.|+.++++|++ ...|...++|..+-.+.. ....++... ..|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~S----------------GGDD~~~~~W~~de~~~~------k~~KPI~~~~~~H~ 105 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLAS----------------GGDDMHGRVWNVDELMVR------KTPKPIGVMEHPHR 105 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEee----------------cCCcceeeeechHHHHhh------cCCCCceeccCccc
Confidence 44467799999999999999999998 335555566643211111 001112222 3466
Q ss_pred cCeeEEEec-CC-EEEEEeCCCcEEEEecCCceeEEEecCCC---ceeEEEEecCCCEEE-EEcCCeEEEEecCCce---
Q 022324 113 VGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV-GLIGTRICIWRRNGLR--- 183 (299)
Q Consensus 113 ~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--- 183 (299)
..|.|++|. .+ .+++|..+++|.+.|+++.+.+..+.... .++.+..+|..+.++ .+.++.|.+||.+...
T Consensus 106 SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred cceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 899999994 44 99999999999999999999888877554 566699999888888 9999999999998654
Q ss_pred -eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc-----------------------------ee------
Q 022324 184 -SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK-----------------------------CS------ 226 (299)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~-----------------------------~~------ 226 (299)
.......+......-|+|..+. |++.+..+-+.+||.+... ..
T Consensus 186 ~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~ 265 (609)
T KOG4227|consen 186 SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG 265 (609)
T ss_pred ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc
Confidence 2222222222223467777666 6677778888899876311 00
Q ss_pred -------------eecc-ccC-------CceeEEEeCCCCeEEEEeCCCcEEEEeCCC----------C-----------
Q 022324 227 -------------QIIR-MHC-------APVTSLSLSEDQLIISGSSLGSIAISGLSS----------D----------- 264 (299)
Q Consensus 227 -------------~~~~-~~~-------~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~----------- 264 (299)
..++ .|. ..+.+++|..+..+++|+.+-.|++|.+.. |
T Consensus 266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 0000 111 245667776675699999999999998752 1
Q ss_pred --ceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 265 --QRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 265 --~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
+.+..+++|.. -++.+.|+|...+|++++
T Consensus 346 i~~~~~VLrGHRS--v~NQVRF~~H~~~l~SSG 376 (609)
T KOG4227|consen 346 IEKELTVLRGHRS--VPNQVRFSQHNNLLVSSG 376 (609)
T ss_pred ecceeEEEecccc--cccceeecCCcceEeccc
Confidence 13456778887 789999999988888765
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=3.9e-14 Score=107.39 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=114.5
Q ss_pred cccCeeEEEe--cCC---EEEEEeCCCcEEEEecCCceeEEEe----------cCC-CceeEEEEecCCCE-EEEEcCCe
Q 022324 111 HSVGVDQCRM--KRG---LILTGVGDKVMRLWSLEGYKCVEEY----------SLP-NAASLVDFDFDESK-IVGLIGTR 173 (299)
Q Consensus 111 h~~~i~~~~~--~~~---~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~-l~~~~d~~ 173 (299)
-.+.+.|..+ .++ +|+.|-.+|.+-+||+.++..+..+ ..| .++.++.+.+.-.. +.++.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 4466777665 333 7888899999999999987443332 233 34455777654443 44777888
Q ss_pred EEEEecCCce-----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeE
Q 022324 174 ICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI 247 (299)
Q Consensus 174 i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l 247 (299)
+.+|.++... ......++.....+.+.++++.+++++.|+.|++|+.++..++..++.|...|++++|+|+ .++
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 9999887542 1111122222234688899999999999999999999999999999999999999999999 999
Q ss_pred EEEeCCCcEEEEeC
Q 022324 248 ISGSSLGSIAISGL 261 (299)
Q Consensus 248 ~~~~~dg~i~iwd~ 261 (299)
|+++.|+.|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=7.8e-15 Score=130.93 Aligned_cols=226 Identities=11% Similarity=0.079 Sum_probs=168.7
Q ss_pred CCCCCCCCcchhccCcHHHH------HHHhhccCccchhhHHHhhhhHH-HHhhhhhHHHHHHhhhcCCCCCCCchhhhh
Q 022324 13 PKKRSSKPRATIESLNGDII------CMIFSSLGFFDLVRCSAVCKSWN-AIINRCKLLQLLYCKLHGFSNTSGSSMRLH 85 (299)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~------~~i~~~~~h~~~v~~~~~~~~~~-~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~ 85 (299)
...+.+..+-.|.+|+.... ..+..+-.|.+.|+.+.|++... .||+ ..+++.+-+|
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS----------------Ga~~geI~iW 144 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLAS----------------GADDGEILIW 144 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeec----------------cCCCCcEEEe
Confidence 34666777788888887653 25556678999999999999765 8887 2344444444
Q ss_pred hhhhhhccccceeecCceeeEEeeccccCeeEEEecCC---EEEEEeCCCcEEEEecCCceeEEEecCCCc---eeEEEE
Q 022324 86 LEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG---LILTGVGDKVMRLWSLEGYKCVEEYSLPNA---ASLVDF 159 (299)
Q Consensus 86 ~~~~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~ 159 (299)
++.. +... +.-| -....+.|.++.|... .|++++.+|.+.|||++..+.+-.+..+.. .-.++|
T Consensus 145 --Dlnn-~~tP-~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 145 --DLNK-PETP-FTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred --ccCC-cCCC-CCCC------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence 5443 1111 1111 1345678999999543 899999999999999998888777765544 234999
Q ss_pred ecCCCE-EE-EEcCC---eEEEEecCCc---eeeeeccCCccceeeeeccCC-CeEEEecCCCcEEEEEcCCcceeeecc
Q 022324 160 DFDESK-IV-GLIGT---RICIWRRNGL---RSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIR 230 (299)
Q Consensus 160 ~~~~~~-l~-~~~d~---~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~ 230 (299)
+|+... ++ ++.|. .|.+||++.. ..+++.|...+. .+.|++.+ .++++++.|+.|.+|+.++++.+.++.
T Consensus 215 hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gil-slsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 215 HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGIL-SLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred CCCCceeeeeecCCCCCceeEeecccccCCchhhhccccccee-eeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 998754 44 66654 8999998854 355666665554 35777777 448999999999999999999999998
Q ss_pred ccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc
Q 022324 231 MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ 265 (299)
Q Consensus 231 ~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 265 (299)
...+.+..+.|+|. ..+++++.||.|.|+.+....
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 88899999999987 689999999999999997543
No 177
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.2e-12 Score=101.87 Aligned_cols=163 Identities=18% Similarity=0.245 Sum_probs=127.2
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCc-e--eeeeccCCccceeeeeccCCCe--E
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL-R--SVFPSREGTFMKGLCMRYFDPE--A 206 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~-~--~~~~~~~~~~~~~~~~~~~~~~--l 206 (299)
..|.|||-...+++.++....++..+.+.+ ..|+....+.|+||.+.+. + ..+....++.. ..++.+.... |
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r--~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkG-lC~~~~~~~k~~L 151 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRR--DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKG-LCSLCPTSNKSLL 151 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcC--CeEEEEecCeEEEEEcCCChhheeeeecccCCCc-eEeecCCCCceEE
Confidence 379999987888999999888888888865 4677788899999999854 3 23333322222 3355555444 3
Q ss_pred E-EecCCCcEEEEEcCCcce--eeeccccCCceeEEEeCCC-CeEEEEeCCCc-EEEEeCCCCceEEEeeccCCCCcEEE
Q 022324 207 V-VGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSED-QLIISGSSLGS-IAISGLSSDQRVATLRSTDCTGHIIC 281 (299)
Q Consensus 207 ~-s~~~d~~i~iwd~~~~~~--~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~i~~ 281 (299)
+ -|-.-|.|.+-|+...+. -..+..|...|.+++.+-+ .++||+|..|+ |||||..+|+++++++.......|.+
T Consensus 152 afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYC 231 (346)
T ss_pred EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEE
Confidence 3 355679999999986555 3567799999999999977 99999999998 59999999999999986655458999
Q ss_pred EEccCCCCeEEeeecc
Q 022324 282 LMYPQFLHMLFFLCFL 297 (299)
Q Consensus 282 ~~~s~~g~~l~s~s~~ 297 (299)
++|||+..+||++|--
T Consensus 232 iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 232 IAFSPNSSWLAVSSDK 247 (346)
T ss_pred EEeCCCccEEEEEcCC
Confidence 9999999999998853
No 178
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.56 E-value=2.5e-13 Score=106.06 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=85.7
Q ss_pred CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEee---ccCCCC
Q 022324 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR---STDCTG 277 (299)
Q Consensus 203 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~ 277 (299)
++.+++|+.-|.|++.|+.+++....+.+|...|+.+.++|+ ++++++|.|.+|++|++++..++..+. +|.+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-- 182 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-- 182 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC--
Confidence 556888999999999999999999999999999999999998 799999999999999999999988874 5666
Q ss_pred cEEEEEccCCCCeEEeeecc
Q 022324 278 HIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 278 ~i~~~~~s~~g~~l~s~s~~ 297 (299)
.|.++.|+++|.+++++++-
T Consensus 183 eVLSvD~~~~gd~i~ScGmD 202 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMD 202 (385)
T ss_pred cEEEEEEcCCCCeeeccCCc
Confidence 89999999999999999863
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=5.4e-13 Score=105.76 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=117.0
Q ss_pred ccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCC--Cc--eeEEEEecCCCEEE--E-EcCCeEEEEecCCce-
Q 022324 112 SVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP--NA--ASLVDFDFDESKIV--G-LIGTRICIWRRNGLR- 183 (299)
Q Consensus 112 ~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~--~~~~~~~~~~~~l~--~-~~d~~i~v~d~~~~~- 183 (299)
..+|.+|.+.-..|+.+-.+. |+|||+++.++++++..- ++ ...+.+++.+.+++ + ...|.|.+||..+-+
T Consensus 87 pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~ 165 (391)
T KOG2110|consen 87 PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP 165 (391)
T ss_pred CCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence 345656666555566666554 999999999999988743 22 22344455556887 3 446899999998765
Q ss_pred -eeeeccCCccceeeeeccCCCeEEEecCCCc-EEEEEcCCcceeeeccc--cCCceeEEEeCCC-CeEEEEeCCCcEEE
Q 022324 184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGT-ARVFDMYSRKCSQIIRM--HCAPVTSLSLSED-QLIISGSSLGSIAI 258 (299)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~--~~~~i~~~~~~~~-~~l~~~~~dg~i~i 258 (299)
..+..|.+... +++++++|..++++++.|+ |+++.+.+|+.+.+|+- ....|.+++|+|+ ++|++.+..++|++
T Consensus 166 v~~I~aH~~~lA-alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi 244 (391)
T KOG2110|consen 166 VNTINAHKGPLA-ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI 244 (391)
T ss_pred eeEEEecCCcee-EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence 56677887765 6799999999999999998 68999999999999972 2456899999999 99999999999999
Q ss_pred EeCCC
Q 022324 259 SGLSS 263 (299)
Q Consensus 259 wd~~~ 263 (299)
|.+.+
T Consensus 245 FKL~~ 249 (391)
T KOG2110|consen 245 FKLEK 249 (391)
T ss_pred EEecc
Confidence 99864
No 180
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.55 E-value=1.5e-13 Score=116.85 Aligned_cols=190 Identities=12% Similarity=0.067 Sum_probs=131.1
Q ss_pred eEEeeccccCeeEEEe-cCC----EEEEEeCCCcEEEEecCCce--eEEEecCCCceeEEEEecCCCEEE-EEcCCeEEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG----LILTGVGDKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIV-GLIGTRICI 176 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~----~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v 176 (299)
..++.||.++|+|+.+ |.. ++++|+.|+.|++|.++... ++..++++ ....+++......+. .+.|+.+.+
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~-~~~~~cv~a~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH-CKECVCVVARSSVMTCKAADGTVSV 125 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCc-ceeEEEEEeeeeEEEeeccCceEEE
Confidence 5667999999999988 443 79999999999999998443 44455553 334455554444444 478999999
Q ss_pred EecCCceee----eeccC-CccceeeeeccCCCe--EEEecCCCcEEEEEcCCc--ceeeeccccCCceeEEEeCC---C
Q 022324 177 WRRNGLRSV----FPSRE-GTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSR--KCSQIIRMHCAPVTSLSLSE---D 244 (299)
Q Consensus 177 ~d~~~~~~~----~~~~~-~~~~~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~~i~~~~~~~---~ 244 (299)
||.+..+.. +.... ....-+++..++... ++.|+.+..|.++.-.+. +.+.++.+|.+.|.+++|.. +
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~ 205 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGD 205 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCC
Confidence 999655411 11111 111112333442222 667777888888865533 45677889999999999984 2
Q ss_pred -CeEEEEeCCCcEEEEeCCCCc---------------------eEEE----------eeccCCCCcEEEEEccCCCCeEE
Q 022324 245 -QLIISGSSLGSIAISGLSSDQ---------------------RVAT----------LRSTDCTGHIICLMYPQFLHMLF 292 (299)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~~---------------------~~~~----------~~~~~~~~~i~~~~~s~~g~~l~ 292 (299)
-+|+++|.|..||||.+.-+. .+.+ +.+|.+ .|+++.|+|.+..|+
T Consensus 206 ~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD--WV~sv~W~p~~~~LL 283 (764)
T KOG1063|consen 206 DLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED--WVYSVWWHPEGLDLL 283 (764)
T ss_pred cEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc--ceEEEEEccchhhhe
Confidence 589999999999999874322 1112 238888 999999999998888
Q ss_pred eeecc
Q 022324 293 FLCFL 297 (299)
Q Consensus 293 s~s~~ 297 (299)
++|.-
T Consensus 284 SASaD 288 (764)
T KOG1063|consen 284 SASAD 288 (764)
T ss_pred ecccC
Confidence 88764
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.54 E-value=5.6e-14 Score=118.60 Aligned_cols=169 Identities=13% Similarity=0.159 Sum_probs=129.6
Q ss_pred EeCCCcEEEEecCC-cee----EEEecCCCceeEEEEec-CCCEEE-EEcCCeEEEEecCCc---------eeeeeccCC
Q 022324 128 GVGDKVMRLWSLEG-YKC----VEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRRNGL---------RSVFPSREG 191 (299)
Q Consensus 128 ~~~dg~i~iwd~~~-~~~----~~~~~~~~~~~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~---------~~~~~~~~~ 191 (299)
.+..|.|-|++++. |++ +-.+.....+..+.|+| |...|+ ++.||.|++|.+..+ ..++..|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 45678999999874 222 22333344455588887 556677 999999999998643 245566665
Q ss_pred ccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc-eEE
Q 022324 192 TFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVA 268 (299)
Q Consensus 192 ~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~ 268 (299)
.+. .+.|+|.-.. |++++.|-+|++||+++++....+.+|.+.|..++|+|+ +.+|+.+.||+|++|..++++ .++
T Consensus 679 KI~-slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 679 KIT-SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred eEE-EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc
Confidence 555 3477777555 889999999999999999998999999999999999999 999999999999999998864 455
Q ss_pred EeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 269 TLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 269 ~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
.-++..+. .--.+.|..+|+++++.++.+
T Consensus 758 Eg~gpvgt-RgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 758 EGKGPVGT-RGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred cCCCCccC-cceeEEEEecCcEEEEecccc
Confidence 54444433 456678888999999988754
No 182
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=2.2e-13 Score=121.05 Aligned_cols=175 Identities=19% Similarity=0.314 Sum_probs=123.1
Q ss_pred EEe--cCCEEEEEeCCCcEEEEecCCceeEEEecCCCcee--EEEEe-cCCCEEE-EEcCCeEEEEecCCce-----eee
Q 022324 118 CRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS--LVDFD-FDESKIV-GLIGTRICIWRRNGLR-----SVF 186 (299)
Q Consensus 118 ~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~~l~-~~~d~~i~v~d~~~~~-----~~~ 186 (299)
+.| ..++|++++.-..|+|||....+.+..+....... .+.-+ ..|+.++ |..||.|++||.+... ...
T Consensus 1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred eehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 356 45578877778999999999888888777554332 33332 3457777 9999999999998543 334
Q ss_pred eccCCc--cceeeeeccCCCe-EEEecCCCcEEEEEcCCcceee--ecccc---CCceeEEEeCCC-CeEEEEeCCCcEE
Q 022324 187 PSREGT--FMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ--IIRMH---CAPVTSLSLSED-QLIISGSSLGSIA 257 (299)
Q Consensus 187 ~~~~~~--~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~--~~~~~---~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (299)
..|... +. -..+.+.+-. +++|+.+|.|++||++...... .+..| .+..+++..+++ ..+|+|+. +.|+
T Consensus 1251 R~h~~~~~Iv-~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1251 REHNDVEPIV-HLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred cccCCcccce-eEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence 444443 22 1245554443 9999999999999999742222 12222 235899999999 89999998 9999
Q ss_pred EEeCCCCceEEEeeccCCC-----CcEEEEEccCCCCeEEeee
Q 022324 258 ISGLSSDQRVATLRSTDCT-----GHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~-----~~i~~~~~s~~g~~l~s~s 295 (299)
||++. |+.+..++.+... +.+.|++|||-.-+||+|+
T Consensus 1329 Iy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~ 1370 (1387)
T KOG1517|consen 1329 IYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS 1370 (1387)
T ss_pred EEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc
Confidence 99995 6666555543321 3789999999988888874
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.53 E-value=3.4e-14 Score=110.67 Aligned_cols=216 Identities=12% Similarity=0.051 Sum_probs=153.6
Q ss_pred CCCCCcchhccCcHHHHHHHhhcc--Cccchhh---HHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhh--
Q 022324 16 RSSKPRATIESLNGDIICMIFSSL--GFFDLVR---CSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEE-- 88 (299)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~i~~~~--~h~~~v~---~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~-- 88 (299)
+......-|.+|+.-+++.-.+|. +|.+.++ |++|+|+|.+|+. + ...++|++..+
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-----------G------ykrcirvFdt~Rp 189 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-----------G------YKRCIRVFDTSRP 189 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-----------c------ccceEEEeeccCC
Confidence 334456678899988887555554 7888775 5899999999885 1 22334444210
Q ss_pred hhhccccceeecCceeeEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCC
Q 022324 89 LAMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES 164 (299)
Q Consensus 89 ~~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~ 164 (299)
=+.-+....+..|. .+..+-|.|++| |-+ .++.|+...++-|+.-....++..+-+|...+. ++|.++|+
T Consensus 190 Gr~c~vy~t~~~~k------~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn 263 (406)
T KOG2919|consen 190 GRDCPVYTTVTKGK------FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGN 263 (406)
T ss_pred CCCCcchhhhhccc------ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcC
Confidence 00001111111111 245667788888 433 899999999999999888889988888876655 99999999
Q ss_pred EEE-EEc-CCeEEEEecCCceee---eeccCCccce--eeeeccCCCeEEEecCCCcEEEEEcCC-cceeeeccccCCce
Q 022324 165 KIV-GLI-GTRICIWRRNGLRSV---FPSREGTFMK--GLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPV 236 (299)
Q Consensus 165 ~l~-~~~-d~~i~v~d~~~~~~~---~~~~~~~~~~--~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i 236 (299)
.++ |+. +..|..||++..... +..+.+.... .+.+.+.+..|++|+.||.|++||++. +..+..+..+...+
T Consensus 264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~v 343 (406)
T KOG2919|consen 264 KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTV 343 (406)
T ss_pred eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccc
Confidence 998 444 779999999976533 3333332221 356778888899999999999999998 66677777889999
Q ss_pred eEEEeCCC-CeEEEEeCCC
Q 022324 237 TSLSLSED-QLIISGSSLG 254 (299)
Q Consensus 237 ~~~~~~~~-~~l~~~~~dg 254 (299)
+.++++|- .++++++...
T Consensus 344 NgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 344 NGVSLNPIMPILATSSGQR 362 (406)
T ss_pred cceecCcccceeeeccCce
Confidence 99999999 8888887644
No 184
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.52 E-value=2.8e-13 Score=115.21 Aligned_cols=181 Identities=13% Similarity=0.142 Sum_probs=135.2
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCC-----cEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRIC 175 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~ 175 (299)
++.+.||.-.|++++. |++ +++|+.... .|++|+..+...++.+.+|+-.+. ++|+||+++|+ ++.|.++.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 3445799999999998 455 888887654 699999999888888999986666 99999999999 99999999
Q ss_pred EEecCCce---eeeeccCC--ccceeeeeccCCCeEEEecCCCcEEEEEcCCc--ceeeec--cccCCceeEEEeCCC--
Q 022324 176 IWRRNGLR---SVFPSREG--TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQII--RMHCAPVTSLSLSED-- 244 (299)
Q Consensus 176 v~d~~~~~---~~~~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~--~~~~~~i~~~~~~~~-- 244 (299)
+|...... ..+..... .+.+...|+|++.++++++.|++|++|..... +.+..+ ..+...|+.+++.|-
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~ 677 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH 677 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence 99986442 22222222 23334578999999999999999999998876 444332 257788999999862
Q ss_pred ----CeEEEEeCCCcEEEEeCCC-------Cce-----EEEeeccCCCCcEEEEEccCC
Q 022324 245 ----QLIISGSSLGSIAISGLSS-------DQR-----VATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 245 ----~~l~~~~~dg~i~iwd~~~-------~~~-----~~~~~~~~~~~~i~~~~~s~~ 287 (299)
..+++|-+.|.|.+|.... +.- +....++.. .|+.+.|.|.
T Consensus 678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--aV~rl~w~p~ 734 (764)
T KOG1063|consen 678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDS--AVNRLLWRPT 734 (764)
T ss_pred ccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHH--hhheeEeccc
Confidence 2788899999999999641 110 111123333 7999999975
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.52 E-value=1.8e-13 Score=113.44 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=133.8
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeecc
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 201 (299)
.++.++.||.+.+-+ +.++....+..|...+. -.|+|+|.-|+ ++.||.|++|.-.+.....-...+....+.+|.|
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 788889999998876 45777778888876665 89999999999 9999999999987764333333333444678999
Q ss_pred CCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEE
Q 022324 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHII 280 (299)
Q Consensus 202 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 280 (299)
++..++-+. .+.+.|=.+.....+-.++.|.+-|.++.|++. +++++|++|-..++||- .|+.+.+-..|+. +|+
T Consensus 156 ~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey--~IT 231 (737)
T KOG1524|consen 156 NSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEY--AIT 231 (737)
T ss_pred CCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhcc--cee
Confidence 988855443 355666666666666778899999999999998 99999999999999997 4888888888888 999
Q ss_pred EEEccCCCCeEEeeec
Q 022324 281 CLMYPQFLHMLFFLCF 296 (299)
Q Consensus 281 ~~~~s~~g~~l~s~s~ 296 (299)
+++|.|+ +.++.+|+
T Consensus 232 Sva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSY 246 (737)
T ss_pred eeeeccc-cceeeeee
Confidence 9999999 77777765
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=1.7e-11 Score=104.94 Aligned_cols=188 Identities=21% Similarity=0.282 Sum_probs=143.2
Q ss_pred eeeEEeeccccCeeEEEe-cCC-EEEEEeC-CCcEEEEecCCceeEEEecCCCceeE-EEEecCCC-EEEE-EcCCeEEE
Q 022324 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDES-KIVG-LIGTRICI 176 (299)
Q Consensus 103 ~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~l~~-~~d~~i~v 176 (299)
.....+..|...|..+.| +++ .+++++. |+.+++|+..+++.+..+..|...+. ++++|++. .+++ +.|+.+++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 345667899999999998 555 7888875 99999999999888888887765555 99999988 4554 88999999
Q ss_pred EecCCceee---eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce-eeeccccCCceeEEEeCCC-CeEEEEe
Q 022324 177 WRRNGLRSV---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED-QLIISGS 251 (299)
Q Consensus 177 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (299)
||....... +..+.... ...+.+.+..+++++.|+.+++|+.+.... +..+..|...+.++.+.|+ ..+++++
T Consensus 226 wd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV--VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EECCCCcEEeeecCCCCcce--eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 988855432 22333221 227888887788999999999999987654 4444577889999999997 7777788
Q ss_pred CCCcEEEEeCCCCceEEEee--ccCCCCcEEEEEccCCCCeEEee
Q 022324 252 SLGSIAISGLSSDQRVATLR--STDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 252 ~dg~i~iwd~~~~~~~~~~~--~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
.|+.+.+||..+........ .+.. .+..+.|.+++..++.+
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSG 346 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEe
Confidence 89999999998887766665 5555 68999884333455554
No 187
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=4.7e-13 Score=110.88 Aligned_cols=160 Identities=13% Similarity=0.123 Sum_probs=116.2
Q ss_pred ccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCCceeee
Q 022324 112 SVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNGLRSVF 186 (299)
Q Consensus 112 ~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~~~~~~ 186 (299)
+..|+|+.| +.+ .++.+-.+|.+.++|..- ............+++..+. . +....- +++...+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~ksk~~-----rNPv~~w 286 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSKSKKT-----RNPVARW 286 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeeecccc-----CCcccee
Confidence 367899988 433 888888999999998621 1111111122223333332 1 111000 0222222
Q ss_pred eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc
Q 022324 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ 265 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 265 (299)
..-++.+. .+++++++.+|++.+.||.++|||..+.+.+..++..-+...|++|+|| ++|++|++|.-|.||.+...+
T Consensus 287 ~~~~g~in-~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 287 HIGEGSIN-EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred Eecccccc-ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 22223333 4689999999999999999999999999988888888888999999999 999999999999999999999
Q ss_pred eEEEeeccCCCCcEEEEEccC
Q 022324 266 RVATLRSTDCTGHIICLMYPQ 286 (299)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~s~ 286 (299)
.+..-++|.. .|..++|+|
T Consensus 366 VVARGqGHkS--WVs~VaFDp 384 (636)
T KOG2394|consen 366 VVARGQGHKS--WVSVVAFDP 384 (636)
T ss_pred EEEecccccc--ceeeEeecc
Confidence 9999999998 999999996
No 188
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.51 E-value=2.4e-13 Score=108.87 Aligned_cols=145 Identities=16% Similarity=0.161 Sum_probs=119.0
Q ss_pred cCCCceeEEEEecCCC-EEE-EEcCCeEEEEecCCce-----------eeeeccCCccceeeeeccCCCeEEEecCCCcE
Q 022324 149 SLPNAASLVDFDFDES-KIV-GLIGTRICIWRRNGLR-----------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTA 215 (299)
Q Consensus 149 ~~~~~~~~~~~~~~~~-~l~-~~~d~~i~v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 215 (299)
..|+++..+.|.++.. .++ ++.|..|++|.+.... ..+..|...++ ++.|++.+..+++|+++|.+
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN-~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVN-VVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeE-EEEEcCCcCeeeecCCCceE
Confidence 3567777799988776 788 9999999999886432 22344554544 56899999999999999999
Q ss_pred EEEEcC--------C--------cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCc
Q 022324 216 RVFDMY--------S--------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGH 278 (299)
Q Consensus 216 ~iwd~~--------~--------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 278 (299)
.+|-.. + ......+.+|...|..++|+|+ .++++++.|.++++||+..|..+..+..|.. .
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~--y 167 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH--Y 167 (434)
T ss_pred EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccc--c
Confidence 999866 2 2234455588899999999999 9999999999999999999999999999988 8
Q ss_pred EEEEEccCCCCeEEeeec
Q 022324 279 IICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 279 i~~~~~s~~g~~l~s~s~ 296 (299)
++.++|.|-++++++-|.
T Consensus 168 vqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSS 185 (434)
T ss_pred cceeecchhhhhhhhhcc
Confidence 999999999999887553
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=5.5e-13 Score=106.66 Aligned_cols=188 Identities=11% Similarity=0.113 Sum_probs=136.5
Q ss_pred EEeeccccCeeEEEec-CC-EEEEEeCCCcEEEEecC------CceeEEEecCC--CceeEEEEecCCCEEE-EEcCCeE
Q 022324 106 DQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLE------GYKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRI 174 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~~-~~-~l~s~~~dg~i~iwd~~------~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~d~~i 174 (299)
+-+.+|.+.|+++.|+ ++ .|++|+.|..+++|++. +.+++.....| ..+.+++|...++.++ |..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 3447999999999994 44 99999999999999975 34666655543 4667799999888888 9999999
Q ss_pred EEEecCCceeeee-ccCCc--cceeeeeccCCCeEEEecCCCcEEEEEcCCcc-eeeec--cccCCceeEEEeCCC--Ce
Q 022324 175 CIWRRNGLRSVFP-SREGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQII--RMHCAPVTSLSLSED--QL 246 (299)
Q Consensus 175 ~v~d~~~~~~~~~-~~~~~--~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~--~~~~~~i~~~~~~~~--~~ 246 (299)
...|+.+.+.+.. .+... ....+..+|.++.+++.+.++.|.+||.+... .+..+ ........++-|+|. .+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999998874432 22221 12245778888889999999999999998654 22222 234556788899997 79
Q ss_pred EEEEeCCCcEEEEeCCCCc-eEEEeeccCC----CCcEEEEEccCCCCeEEe
Q 022324 247 IISGSSLGSIAISGLSSDQ-RVATLRSTDC----TGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 247 l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~~i~~~~~s~~g~~l~s 293 (299)
|++++..+-+-+||++..+ .+.......+ ...-.++.|+|+|..|.+
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms 261 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS 261 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh
Confidence 9999999999999998643 2222211111 013467889998887654
No 190
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=2.5e-14 Score=116.35 Aligned_cols=174 Identities=13% Similarity=0.061 Sum_probs=139.7
Q ss_pred cCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccC
Q 022324 113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE 190 (299)
Q Consensus 113 ~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~ 190 (299)
..|.++.| .+..++.......++||| ..|..++.++.+..+..+.|-|..-+|+ ++..|.++.-|+.+++.+.....
T Consensus 171 Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t 249 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT 249 (545)
T ss_pred hhhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc
Confidence 34555656 455555556677889998 4588899999888888899999988888 88899999999998874433222
Q ss_pred C-ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE
Q 022324 191 G-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA 268 (299)
Q Consensus 191 ~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 268 (299)
+ ....+++-+|.+.-+-.|...|+|.+|...+.+++..+..|.++|.++++.++ .+++|.+.|..++|||+++-..+.
T Consensus 250 ~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 250 GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence 2 12235677777777889999999999999999999888899999999999999 999999999999999999988777
Q ss_pred EeeccCCCCcEEEEEccCCCCe
Q 022324 269 TLRSTDCTGHIICLMYPQFLHM 290 (299)
Q Consensus 269 ~~~~~~~~~~i~~~~~s~~g~~ 290 (299)
++.... +...++||..|.+
T Consensus 330 t~~tp~---~a~~ls~SqkglL 348 (545)
T KOG1272|consen 330 TYRTPH---PASNLSLSQKGLL 348 (545)
T ss_pred eeecCC---Cccccccccccce
Confidence 776633 6788899876643
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.50 E-value=1.1e-12 Score=113.41 Aligned_cols=185 Identities=16% Similarity=0.147 Sum_probs=130.3
Q ss_pred cccCeeEEEe-c--CCEEEEEeCCCcEEEEecCCcee--EEEe-----cCCCceeEEEEecCCCE--EE-EEcCCeEEEE
Q 022324 111 HSVGVDQCRM-K--RGLILTGVGDKVMRLWSLEGYKC--VEEY-----SLPNAASLVDFDFDESK--IV-GLIGTRICIW 177 (299)
Q Consensus 111 h~~~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~--l~-~~~d~~i~v~ 177 (299)
-...|.++.| + ..+++.|..+|.|.+||+..+.. ...+ .+..+++.+.|..+... ++ ++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 4568888888 3 33999999999999999987654 2222 13345555777554433 66 8889999999
Q ss_pred ecCCce--------------------------------------------ee---------------ee------ccCCc
Q 022324 178 RRNGLR--------------------------------------------SV---------------FP------SREGT 192 (299)
Q Consensus 178 d~~~~~--------------------------------------------~~---------------~~------~~~~~ 192 (299)
+++.-. .+ ++ .+.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 875400 00 01 11111
Q ss_pred cceeeeeccCCCeEEEecCCCcEEEEEcC-CcceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCC--ceE
Q 022324 193 FMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSD--QRV 267 (299)
Q Consensus 193 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~--~~~ 267 (299)
.. ++.++|....++..+.|.++++|... ...++..+..+...+++++|||. ..++++..||.|.+||+... +++
T Consensus 401 v~-~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 401 VY-AVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred eE-eeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 11 23456666654444449999999988 66777777778888999999998 68999999999999999754 445
Q ss_pred EEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 268 ATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
.+...... ..+.+.|+++|+.|++|...|
T Consensus 480 ~s~~~~~~--~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 480 LSQKVCSP--ALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred cccccccc--ccceeecCCCCcEEEEecCCC
Confidence 55555543 778889999999999998765
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.6e-12 Score=115.76 Aligned_cols=185 Identities=19% Similarity=0.208 Sum_probs=131.6
Q ss_pred ccCeeEEEe-c--CC-EEEEEeCCCcEEEEecC-C----ceeEEEecC--------CCceeEEEEecCCCEEE-EEcCCe
Q 022324 112 SVGVDQCRM-K--RG-LILTGVGDKVMRLWSLE-G----YKCVEEYSL--------PNAASLVDFDFDESKIV-GLIGTR 173 (299)
Q Consensus 112 ~~~i~~~~~-~--~~-~l~s~~~dg~i~iwd~~-~----~~~~~~~~~--------~~~~~~~~~~~~~~~l~-~~~d~~ 173 (299)
...|+.+.+ + +. ++++|+.||.|+||+-- + .+.+..+.. .+....++|.....+|+ ++.-..
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~ 1188 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRS 1188 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeE
Confidence 456888877 2 22 99999999999999742 2 234433321 11223377776666666 555789
Q ss_pred EEEEecCCceeeeeccCCccceeeeeccC---CCeEEEecCCCcEEEEEcCCcc---eeeeccccCCc--eeEEEeCCC-
Q 022324 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYF---DPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAP--VTSLSLSED- 244 (299)
Q Consensus 174 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~--i~~~~~~~~- 244 (299)
|+|||..........+.+....+.+++.+ ++.+++|..||.|++||.+... .+...+.|+.. |..+.+.+.
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 99999998876666555554445555554 4569999999999999988643 45666778777 999999885
Q ss_pred -CeEEEEeCCCcEEEEeCCCCceEEE--eeccCC-CCcEEEEEccCCCCeEEeeec
Q 022324 245 -QLIISGSSLGSIAISGLSSDQRVAT--LRSTDC-TGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~-~~~i~~~~~s~~g~~l~s~s~ 296 (299)
..|++|+.||.|++||++....... +..|.. +...+++..|++...+|+|+-
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA 1324 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc
Confidence 6799999999999999997433222 222221 115999999999999999983
No 193
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=4.1e-12 Score=97.10 Aligned_cols=136 Identities=9% Similarity=0.086 Sum_probs=96.1
Q ss_pred eEEEEecCCCEEE--EEcC---------CeEEEEecCC--ce-eeeeccCCccceeeeeccCCCeEE--EecCCCcEEEE
Q 022324 155 SLVDFDFDESKIV--GLIG---------TRICIWRRNG--LR-SVFPSREGTFMKGLCMRYFDPEAV--VGCEDGTARVF 218 (299)
Q Consensus 155 ~~~~~~~~~~~l~--~~~d---------~~i~v~d~~~--~~-~~~~~~~~~~~~~~~~~~~~~~l~--s~~~d~~i~iw 218 (299)
..+.|+++|+.|+ ...+ +...+|.++. .. ..+..........++|+|++..++ .|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 4588888888876 3311 2344554432 22 223222222233569999999854 35567899999
Q ss_pred EcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC---CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
|++ ++.+..+. ...++.+.|+|+ +++++++. .|.|.+||+++.+.+.+.... .++.++|+|||++|+++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCCEEEEE
Confidence 997 66666663 567889999999 99998875 467999999988888776432 57899999999999998
Q ss_pred ecc
Q 022324 295 CFL 297 (299)
Q Consensus 295 s~~ 297 (299)
+..
T Consensus 162 ~t~ 164 (194)
T PF08662_consen 162 TTS 164 (194)
T ss_pred Eec
Confidence 764
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.49 E-value=2e-12 Score=100.81 Aligned_cols=185 Identities=14% Similarity=0.101 Sum_probs=140.6
Q ss_pred EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc---eeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEec
Q 022324 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRR 179 (299)
Q Consensus 107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~ 179 (299)
.++--.++|+|.+| ++. .++.+-....|.||..... +..+++..|+..+. ++|+|..+.|+ ++.|..-++|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34455679999999 555 8999999999999998754 46778888877776 99999999999 999999999998
Q ss_pred CC-ce----eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce---ee-eccccCCceeEEEeCCC-CeEEE
Q 022324 180 NG-LR----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQ-IIRMHCAPVTSLSLSED-QLIIS 249 (299)
Q Consensus 180 ~~-~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~-~~~~~~~~i~~~~~~~~-~~l~~ 249 (299)
.. +. .++..+..... .+.|+|.++.+++|+....|.+|-.+.... .. .-+.+...|+++.|+|+ -+|++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt-~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAAT-CVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEecccee-eEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 43 32 33344444433 568999999999999999999998774321 11 22356788999999999 78999
Q ss_pred EeCCCcEEEEeCC------------------CCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 250 GSSLGSIAISGLS------------------SDQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 250 ~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
|+.|+..+++..- -|+++.++....+ .|..+.|+|+|..|+-.
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~gg--wvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGG--WVHGVLFSPSGNRLAWV 224 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCC--ceeeeEeCCCCCEeeEe
Confidence 9999999998642 1334444443333 89999999999988743
No 195
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=3.4e-12 Score=115.20 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=138.9
Q ss_pred ceeeEEeeccccCeeEEEe--cCC-EEEEEeCCCcEEEEecCCc-------eeEEEec-CCCceeEEEEecCCCEEE-EE
Q 022324 102 RIDIDQWKAHSVGVDQCRM--KRG-LILTGVGDKVMRLWSLEGY-------KCVEEYS-LPNAASLVDFDFDESKIV-GL 169 (299)
Q Consensus 102 ~~~~~~~~~h~~~i~~~~~--~~~-~l~s~~~dg~i~iwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~-~~ 169 (299)
+..+..++.|...|..++. +++ +++|||.||+|++||...- +...++. ..+.+..+.+.+.+..++ ++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 3346778899999998877 342 9999999999999997631 2333444 334455588888999999 99
Q ss_pred cCCeEEEEecCCc--ee-------eee-ccCCccceeeeeccCC--CeEEEecCCCcEEEEEcCCcceeeecc--ccCCc
Q 022324 170 IGTRICIWRRNGL--RS-------VFP-SREGTFMKGLCMRYFD--PEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAP 235 (299)
Q Consensus 170 ~d~~i~v~d~~~~--~~-------~~~-~~~~~~~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~ 235 (299)
.||.|.+.++... .. +.. ...+......++.... ..++.+...+.|..||+++......++ ...+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 9999999998752 11 011 1112222222222222 247778888999999999877665554 44578
Q ss_pred eeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC---CeEEeeec
Q 022324 236 VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL---HMLFFLCF 296 (299)
Q Consensus 236 i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~~l~s~s~ 296 (299)
|++++.+|. .+++.|+..|.+.+||++=+.++..+...... +|+.+..+|-. ...++++.
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~-~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARA-PIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccC-CcceEEeeccCCCCceEEEecc
Confidence 999999999 99999999999999999999988888765543 88888887743 45555554
No 196
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.49 E-value=1.4e-13 Score=116.23 Aligned_cols=134 Identities=19% Similarity=0.283 Sum_probs=106.5
Q ss_pred cCCCEEE---EEcCCeEEEEecCCcee----eeec-cCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCc-------c
Q 022324 161 FDESKIV---GLIGTRICIWRRNGLRS----VFPS-REGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-------K 224 (299)
Q Consensus 161 ~~~~~l~---~~~d~~i~v~d~~~~~~----~~~~-~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~-------~ 224 (299)
.+...++ ++..|.|-||+++.+.. ++.. ..+....-+.|.|+++. |+.+++||.|++|.+..+ +
T Consensus 589 an~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t 668 (1012)
T KOG1445|consen 589 ANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMT 668 (1012)
T ss_pred eccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCC
Confidence 3444444 66789999999987642 2222 22222223567777665 999999999999998754 2
Q ss_pred eeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 225 CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
....+..|...|+++.|+|= ..|+++++|-+|++||+++++....+.+|.+ .|.+++|||+|+.+|+.+-
T Consensus 669 Pe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd--qIf~~AWSpdGr~~AtVcK 740 (1012)
T KOG1445|consen 669 PEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTD--QIFGIAWSPDGRRIATVCK 740 (1012)
T ss_pred cceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcC--ceeEEEECCCCcceeeeec
Confidence 34556689999999999995 8999999999999999999999999999999 8999999999999998764
No 197
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=3.3e-12 Score=102.05 Aligned_cols=190 Identities=12% Similarity=0.087 Sum_probs=147.4
Q ss_pred EEeeccccCeeEEEecCCEEEEEeCCCcEEEEecCCce----eEEEecCCCceeEEEEecCCCEEE--EEcC--CeEEEE
Q 022324 106 DQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK----CVEEYSLPNAASLVDFDFDESKIV--GLIG--TRICIW 177 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~--~~~d--~~i~v~ 177 (299)
.+....+++|..+...++.|++|-.+|.+.+|..+.+. ....+..+.+...+.-++....++ |+.. ..+.+|
T Consensus 99 ~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 99 KTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred cccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeee
Confidence 34456677788888888899999999999999988443 344555566666677777666655 6666 689999
Q ss_pred ecCCceeeeeccCCcc--------ceee--eeccC--CCeEEEecCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC
Q 022324 178 RRNGLRSVFPSREGTF--------MKGL--CMRYF--DPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED 244 (299)
Q Consensus 178 d~~~~~~~~~~~~~~~--------~~~~--~~~~~--~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~ 244 (299)
|+.+.+.++....-.. .+.. .|-+. ...|+++..-+.+++||.+.+ +++..|.-...+++++...|+
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS 258 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC
Confidence 9998876665432211 1122 23333 334999999999999999875 467778777889999999999
Q ss_pred -CeEEEEeCCCcEEEEeCCCCceEEE-eeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 245 -QLIISGSSLGSIAISGLSSDQRVAT-LRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+++.+|..-|.+..||++.++.+.. +++-.+ .|+++-.+|++++|+++++-
T Consensus 259 gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG--sirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 259 GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG--SIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred CcEEEEecccchhheecccCceeeccccCCccC--CcceEEEcCCCceEEeeccc
Confidence 9999999999999999999998877 777777 89999999999999999975
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=8e-13 Score=103.75 Aligned_cols=164 Identities=16% Similarity=0.285 Sum_probs=120.9
Q ss_pred eEEeeccccCeeEEEe-cC-C--EEEEEeCCCcEEEEecCCceeEEEec--CCC--ceeEEEEecCCCEEE-EEc----C
Q 022324 105 IDQWKAHSVGVDQCRM-KR-G--LILTGVGDKVMRLWSLEGYKCVEEYS--LPN--AASLVDFDFDESKIV-GLI----G 171 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~----d 171 (299)
+..+++|...++.+.| .+ . .+.+|+.||+|++||+++......+. .+. +-++++....++.++ ++. +
T Consensus 63 l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~ 142 (376)
T KOG1188|consen 63 LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSD 142 (376)
T ss_pred hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCc
Confidence 4556899999999988 32 3 89999999999999999876555444 333 223344444666776 432 4
Q ss_pred CeEEEEecCCcee----eeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcc----eeeeccccCCceeEEEeC
Q 022324 172 TRICIWRRNGLRS----VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLS 242 (299)
Q Consensus 172 ~~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~i~~~~~~ 242 (299)
-.|.+||.+..+. ....|...+. .++|+|.++. |++|+.||.|.+||+.... .+.++ .+...|..+.|.
T Consensus 143 A~v~lwDvR~~qq~l~~~~eSH~DDVT-~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~ 220 (376)
T KOG1188|consen 143 ASVVLWDVRSEQQLLRQLNESHNDDVT-QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWL 220 (376)
T ss_pred eEEEEEEeccccchhhhhhhhccCcce-eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeee
Confidence 5899999997754 3455666555 4589998877 8999999999999987532 22333 567779999998
Q ss_pred CC--CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022324 243 ED--QLIISGSSLGSIAISGLSSDQRVATL 270 (299)
Q Consensus 243 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 270 (299)
.+ +.+.+-+..++..+|+++.+.+...+
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 66 68999999999999999887654444
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=9e-12 Score=107.55 Aligned_cols=183 Identities=11% Similarity=-0.012 Sum_probs=118.1
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE-cCCeE--E
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRI--C 175 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~d~~i--~ 175 (299)
.+.+..|...+....| |++ .|+..+.+ ..|++||+.+++..............+|+||++.|+ +. .+|.+ +
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence 4455678888999999 666 77776644 369999999876433222222233589999999888 43 57754 4
Q ss_pred EEecCCce-eeeeccCCccceeeeeccCCCeEEEe-cCCCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEe
Q 022324 176 IWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (299)
Q Consensus 176 v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (299)
+||+.++. ..+..... ......|++++..++.. ..++...+|+++.. .....+ .+.. ....|+|+ ++|+..+
T Consensus 276 ~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 276 VMGANGGTPSQLTSGAG-NNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN 351 (429)
T ss_pred EEECCCCCeEeeccCCC-CcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc
Confidence 55665553 22222222 22246899999986644 45788888876532 222222 3333 45789999 8888877
Q ss_pred CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 252 SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 252 ~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.++ +.+||+.+++....... . ...++.|+|+|++|+.++.
T Consensus 352 ~~~-i~~~Dl~~g~~~~lt~~-~---~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 352 GDN-VVKQDLTSGSTEVLSST-F---LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCC-EEEEECCCCCeEEecCC-C---CCCCceECCCCCEEEEEEc
Confidence 755 66699988875432222 1 3356789999999998764
No 200
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.47 E-value=6.8e-13 Score=103.35 Aligned_cols=223 Identities=13% Similarity=0.124 Sum_probs=155.4
Q ss_pred cchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecC-ceeeEEeeccccCeeEEEe
Q 022324 42 FDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEG-RIDIDQWKAHSVGVDQCRM 120 (299)
Q Consensus 42 ~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g-~~~~~~~~~h~~~i~~~~~ 120 (299)
.+.|+|.+++++...+|. .+..+.+.+|-. . ... -...++++.|...|+++.|
T Consensus 10 ~~pitchAwn~drt~iAv----------------~~~~~evhiy~~------~----~~~~w~~~htls~Hd~~vtgvdW 63 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAV----------------SPNNHEVHIYSM------L----GADLWEPAHTLSEHDKIVTGVDW 63 (361)
T ss_pred cCceeeeeecCCCceEEe----------------ccCCceEEEEEe------c----CCCCceeceehhhhCcceeEEee
Confidence 356788888888888875 223333344411 0 111 1236778999999999999
Q ss_pred -cCC-EEEEEeCCCcEEEEec-CCceeEE---EecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce------eeee
Q 022324 121 -KRG-LILTGVGDKVMRLWSL-EGYKCVE---EYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR------SVFP 187 (299)
Q Consensus 121 -~~~-~l~s~~~dg~i~iwd~-~~~~~~~---~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~------~~~~ 187 (299)
+.. .|++++.|..-++|.. ..++... .++.......+.|+|.++.++ ++....|.||-++... .+..
T Consensus 64 ap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk 143 (361)
T KOG1523|consen 64 APKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK 143 (361)
T ss_pred cCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC
Confidence 444 9999999999999998 4444322 233555667799999999999 8889999998887654 1222
Q ss_pred ccCCccceeeeeccCCCeEEEecCCCcEEEEEcC-----C-------------cceeeeccccCCceeEEEeCCC-CeEE
Q 022324 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-----S-------------RKCSQIIRMHCAPVTSLSLSED-QLII 248 (299)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~-------------~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (299)
..... ...++|++++-.+++|+.|++.+++... + |+.+.++....+.+..+.|+|+ ..|+
T Consensus 144 PirSt-v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 144 PIRST-VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred ccccc-eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 22222 2356899988889999999999998742 1 2344445456788999999998 9999
Q ss_pred EEeCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022324 249 SGSSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s 293 (299)
-.+.|..+.+-|..... .+.++....- +..++.|-.+...+++
T Consensus 223 wv~Hds~v~~~da~~p~~~v~~~~~~~l--P~ls~~~ise~~vv~a 266 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAGPSERVQSVATAQL--PLLSVSWISENSVVAA 266 (361)
T ss_pred EecCCCceEEeecCCCchhccchhhccC--CceeeEeecCCceeec
Confidence 99999999999976543 3444444443 6777777655444433
No 201
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.43 E-value=2.5e-11 Score=101.84 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=130.1
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecC----CCceeEEEE------e--------------cCCCEEE-EEcCCeEEEEe
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSL----PNAASLVDF------D--------------FDESKIV-GLIGTRICIWR 178 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~------~--------------~~~~~l~-~~~d~~i~v~d 178 (299)
|+|....||.+++||..+++....|.. .+..+...| + .+...++ |...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 899999999999999999887776652 122222222 1 1233466 99999999999
Q ss_pred cCCceeeee----ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC
Q 022324 179 RNGLRSVFP----SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (299)
Q Consensus 179 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (299)
...++.... .|.+.+. ++-++..-..|.+++.|+.+..|+..+...++.+......+.+++.+|| ..+++++
T Consensus 87 ~~~g~it~~~st~~h~~~v~-~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-- 163 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVN-EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-- 163 (541)
T ss_pred ecCCeEEEEEecCCCCCcce-eeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--
Confidence 998864332 3333333 2233444444999999999999999999999999888888999999999 8888886
Q ss_pred CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCC-----CCeEEeee
Q 022324 254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQF-----LHMLFFLC 295 (299)
Q Consensus 254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----g~~l~s~s 295 (299)
++|++||+++++.+.+|.+|.. +|++++|--+ |.+++++.
T Consensus 164 ~~ik~~~~~~kevv~~ftgh~s--~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 164 RQIKVLDIETKEVVITFTGHGS--PVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred ceEEEEEccCceEEEEecCCCc--ceEEEEEEEeccccccceeeecc
Confidence 6899999999999999999999 9999999877 77777653
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.8e-12 Score=111.90 Aligned_cols=231 Identities=13% Similarity=0.069 Sum_probs=144.0
Q ss_pred cchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeec
Q 022324 21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEE 100 (299)
Q Consensus 21 ~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~ 100 (299)
...|.+|+.+-.. ...+..|.+.+...+|+|+++.|+... ..+....+|+.++..+..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s---------------~~~~~~~i~i~dl~tg~~------ 240 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVS---------------FENKKSQLVVHDLRSGAR------ 240 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEE---------------ecCCCcEEEEEeCCCCce------
Confidence 3667777765433 344567888899999999999988510 011111233323221111
Q ss_pred CceeeEEeeccccCeeEEEe-cCC-EEEEE-eCCCcEEEE--ecCCceeEEEecCCC-ceeEEEEecCCCEEE-EE-cCC
Q 022324 101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTG-VGDKVMRLW--SLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GL-IGT 172 (299)
Q Consensus 101 g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~-~~dg~i~iw--d~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~-~d~ 172 (299)
..+..+.+|. ..+.| |++ .|+.+ +.+|.+.|| |+.+++... +..+. ......|+||++.|+ ++ .++
T Consensus 241 --~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~wSpDG~~i~f~s~~~g 314 (429)
T PRK01742 241 --KVVASFRGHN---GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTSGAGNNTEPSWSPDGQSILFTSDRSG 314 (429)
T ss_pred --EEEecCCCcc---CceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-eccCCCCcCCEEECCCCCEEEEEECCCC
Confidence 0122233443 34677 676 66655 568876655 666665443 33333 344599999999877 44 467
Q ss_pred eEEEEecCC--ceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEE
Q 022324 173 RICIWRRNG--LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS 249 (299)
Q Consensus 173 ~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~ 249 (299)
...+|++.. .........+ ....++|++..++..+.++ +.+||+.+++........ ....+.|+|+ ++|+.
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~---~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG---YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIY 388 (429)
T ss_pred CceEEEEECCCCCeEEecCCC---CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEE
Confidence 777777643 3222112222 2347899999988777654 566999887654332222 2356789999 89999
Q ss_pred EeCCCcEEEEeC--CCCceEEEeeccCCCCcEEEEEccCC
Q 022324 250 GSSLGSIAISGL--SSDQRVATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 250 ~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~i~~~~~s~~ 287 (299)
++.++...+|++ .+|+..+.+..+.+ .+...+|+|-
T Consensus 389 ~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 389 SSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 999998888875 35888888887766 7888999984
No 203
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.41 E-value=1.9e-10 Score=98.46 Aligned_cols=186 Identities=21% Similarity=0.291 Sum_probs=143.0
Q ss_pred EeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce-eEEEecCCC--ceeEEEE-ecCCC-EEE-EEc-CCeEEEE
Q 022324 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-CVEEYSLPN--AASLVDF-DFDES-KIV-GLI-GTRICIW 177 (299)
Q Consensus 107 ~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~--~~~~~~~-~~~~~-~l~-~~~-d~~i~v~ 177 (299)
.+..|...|.++.+ +.+ .++.++.|+.+.+|+..... ....+.... ....+.+ .+++. .++ .+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 34689999999999 444 78888899999999998886 666666533 3333555 77777 444 344 8999999
Q ss_pred ecCC-c--eeeeeccCCccceeeeeccCCCeEEEecC-CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEe
Q 022324 178 RRNG-L--RSVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGS 251 (299)
Q Consensus 178 d~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~ 251 (299)
+... . ...+..+...+. .+++.+.+..+++++. ++.+++|+...+..+..+..|...|.+++++|+ . .+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVT-SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEE-EEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9986 2 244455554444 5688888888888875 999999999988888888889999999999988 6 555559
Q ss_pred CCCcEEEEeCCCCceEE-EeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 252 SLGSIAISGLSSDQRVA-TLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 252 ~dg~i~iwd~~~~~~~~-~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.|+.|++||...++.+. .+..|.. .. -..|+|++.++++++.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSD--SV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCc--ce-eEeECCCCCEEEEecC
Confidence 99999999998888887 6777776 43 2389999988776654
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=4.8e-13 Score=109.01 Aligned_cols=177 Identities=13% Similarity=0.086 Sum_probs=149.5
Q ss_pred EEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCce-eeeeccCCcc
Q 022324 117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR-SVFPSREGTF 193 (299)
Q Consensus 117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~-~~~~~~~~~~ 193 (299)
.+.+ .++ +|+.|+.-|.|..+|..++++...+...+.+..+.|-.+..+++......++|||-.+-+ ..+..+.. +
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~-v 212 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIR-V 212 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCc-h
Confidence 4555 455 999999999999999999999999988887777999888888888999999999987664 22333222 1
Q ss_pred ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeec
Q 022324 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (299)
Q Consensus 194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 272 (299)
. .+.|-|..-.|++++..|.++.-|+.+|+.+..+....+.+..+.-+|- ..+-+|...|+|.+|.....+++..+..
T Consensus 213 ~-rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc 291 (545)
T KOG1272|consen 213 A-RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC 291 (545)
T ss_pred h-hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh
Confidence 1 2344454555889999999999999999999999888889999999997 7899999999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCCeEEeeecc
Q 022324 273 TDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 273 ~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
|.+ +|.++++.++|+|++++++-
T Consensus 292 H~g--~V~siAv~~~G~YMaTtG~D 314 (545)
T KOG1272|consen 292 HRG--PVSSIAVDRGGRYMATTGLD 314 (545)
T ss_pred cCC--CcceEEECCCCcEEeecccc
Confidence 998 99999999999999998864
No 205
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.41 E-value=1.3e-10 Score=97.13 Aligned_cols=180 Identities=11% Similarity=0.100 Sum_probs=117.4
Q ss_pred CeeEEEe-cCC-EEEEEe-CCCcEEEEecCC-c---eeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCcee
Q 022324 114 GVDQCRM-KRG-LILTGV-GDKVMRLWSLEG-Y---KCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRS 184 (299)
Q Consensus 114 ~i~~~~~-~~~-~l~s~~-~dg~i~iwd~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~ 184 (299)
....+.+ +++ ++++++ .++.|.+|++++ + +.+..+.....+..++++|++++++ ...++.|.+||+.+...
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 3455777 566 666655 489999999874 2 2333343434455688999999886 44568999999976321
Q ss_pred e-------eeccCCccceeeeeccCCCeEEEecC-CCcEEEEEcCC--cc--eeeecccc------CCceeEEEeCCC-C
Q 022324 185 V-------FPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYS--RK--CSQIIRMH------CAPVTSLSLSED-Q 245 (299)
Q Consensus 185 ~-------~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~~~------~~~i~~~~~~~~-~ 245 (299)
. .....+.....+.+++++++++++.. ++.|.+||+.. ++ .+..+... ......+.++|+ +
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 1 11122222334688999999877765 89999999973 22 23333211 122346889999 8
Q ss_pred eEEEEeC-CCcEEEEeCCCCc----eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 246 LIISGSS-LGSIAISGLSSDQ----RVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 246 ~l~~~~~-dg~i~iwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+++++.. ++.|.+|++.... .+...... . ....+.|+|+|++|++++.
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~--~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-T--QPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-c--cCCceEECCCCCEEEEEEc
Confidence 8887754 7899999986533 22333222 1 4568999999999998763
No 206
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=5.2e-11 Score=92.96 Aligned_cols=152 Identities=14% Similarity=0.235 Sum_probs=117.3
Q ss_pred ccccCeeEEEecCCEEEEEeCCCcEEEEecC-CceeEEEecC---CCceeEEEEecCCCEEE--EEcCCeEEEEecCCce
Q 022324 110 AHSVGVDQCRMKRGLILTGVGDKVMRLWSLE-GYKCVEEYSL---PNAASLVDFDFDESKIV--GLIGTRICIWRRNGLR 183 (299)
Q Consensus 110 ~h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~---~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~ 183 (299)
....+|.++.+..+.++..- ...|+||... +.+.++.++. +.+..+++-..+...|+ |-.-|.|++-|+....
T Consensus 92 ~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~ 170 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK 170 (346)
T ss_pred EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC
Confidence 45678888888666555554 4789999987 5666666653 33323343344445566 7778999999997543
Q ss_pred ----eeeeccCCccceeeeeccCCCeEEEecCCCc-EEEEEcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeCCCc
Q 022324 184 ----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGT-ARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGS 255 (299)
Q Consensus 184 ----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (299)
..+..|.+.+. +++++.+|..+|+++..|+ |+|||..+|+.+++++ .....|.+|+|+|+ .+|+++|..|+
T Consensus 171 ~~~p~~I~AH~s~Ia-cv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIA-CVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred cCCceEEEcccCcee-EEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 46677777665 6789999999999999998 7899999999999997 34567999999999 99999999999
Q ss_pred EEEEeCCC
Q 022324 256 IAISGLSS 263 (299)
Q Consensus 256 i~iwd~~~ 263 (299)
|+|+.++.
T Consensus 250 lHiF~l~~ 257 (346)
T KOG2111|consen 250 LHIFSLRD 257 (346)
T ss_pred EEEEEeec
Confidence 99999875
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.40 E-value=1.5e-11 Score=104.83 Aligned_cols=218 Identities=11% Similarity=0.092 Sum_probs=151.6
Q ss_pred CCCCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhh
Q 022324 10 SPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEEL 89 (299)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~ 89 (299)
.+.++-++++.+...-+|++.. .-++.| .|.+.|.|+.|+|-...+++ +.+ ...-+|
T Consensus 63 ~dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h~Las-CsL----------------sdFglW---- 119 (1081)
T KOG1538|consen 63 KDGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITHQLAS-CSL----------------SDFGLW---- 119 (1081)
T ss_pred cCCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHHHhhh-cch----------------hhcccc----
Confidence 4667778888888888888654 233333 78899999999998888887 111 011222
Q ss_pred hhccccceeecCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC---C-CceeEEEEecCC
Q 022324 90 AMKHHRFALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL---P-NAASLVDFDFDE 163 (299)
Q Consensus 90 ~~~~~~~~l~~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---~-~~~~~~~~~~~~ 163 (299)
++..+.+.. ......|.+++| .|+ +|+.|-.||+|.+-+- ++++...++. + +++..++|+|..
T Consensus 120 --S~~qK~V~K--------~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 120 --SPEQKSVSK--------HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred --ChhhhhHHh--------hhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCC
Confidence 222222210 122346778899 566 9999999999999864 4555555543 3 455569998854
Q ss_pred -----CEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee
Q 022324 164 -----SKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT 237 (299)
Q Consensus 164 -----~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~ 237 (299)
..++ ...+.++.+|.+.+...-....-+-...++...+++.+++.|+.|+.+++|-. .|-.+.+.......|+
T Consensus 189 g~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIW 267 (1081)
T KOG1538|consen 189 GEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIW 267 (1081)
T ss_pred CCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEE
Confidence 2455 77788999998876532111111112224567788999999999999999964 4777777766788999
Q ss_pred EEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022324 238 SLSLSED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 238 ~~~~~~~-~~l~~~~~dg~i~iwd~~ 262 (299)
.++..|+ +.++.|+.||+|..|++-
T Consensus 268 tV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 268 TVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEccCCceEEEEEccCeeehhhhH
Confidence 9999999 999999999999999874
No 208
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.1e-10 Score=100.89 Aligned_cols=186 Identities=11% Similarity=-0.018 Sum_probs=120.3
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCC--eEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RIC 175 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~--~i~ 175 (299)
.+.+..|...+....| |++ .|+..+.+ ..|.+||+.+++...............|+|+++.++ .+.++ .|+
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3445567777888888 666 77766643 469999998887644333333333589999999876 34455 699
Q ss_pred EEecCCceee-eeccCCccceeeeeccCCCeEEEec-CCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022324 176 IWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGC-EDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (299)
Q Consensus 176 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (299)
+||+.++... +..+.. .....+|++++..++..+ .++. |.++|+.+++... +..+.......+|+|+ +.++..
T Consensus 276 ~~d~~~g~~~~lt~~~~-~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 276 VMDLGSRQLTRLTNHFG-IDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred EEECCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEE
Confidence 9999876522 222222 222358999999877655 3444 6667777665433 2223334557899999 777766
Q ss_pred eCCC---cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 251 SSLG---SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 251 ~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+.++ .|.+||+.+++.. .+... . ......|+|||++++..+.
T Consensus 354 ~~~~~~~~I~v~d~~~g~~~-~Lt~~-~--~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGSVR-TLTPG-S--LDESPSFAPNGSMVLYATR 398 (433)
T ss_pred ECCCCceeEEEEECCCCCeE-ECCCC-C--CCCCceECCCCCEEEEEEe
Confidence 5433 5999999877654 33322 2 3456789999998876553
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.5e-10 Score=98.43 Aligned_cols=186 Identities=11% Similarity=-0.020 Sum_probs=118.5
Q ss_pred EEeeccccCeeEEEe-cCC-EEEEEe---CCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCC--eEEE
Q 022324 106 DQWKAHSVGVDQCRM-KRG-LILTGV---GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RICI 176 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~-~~~-~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~--~i~v 176 (299)
+.+..+...+....| |++ .|+..+ .+..|.+|++.+++...............|+||++.|+ . ..++ .|++
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 334456667888888 777 665543 24579999999886544333333344589999999988 3 3344 6999
Q ss_pred EecCCceeeeeccCCccceeeeeccCCCeEEEecC-CCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC
Q 022324 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (299)
Q Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (299)
||+.++................|+|++..++..+. ++. |.++|+.+++.. .+...........|+|| ++++..+.
T Consensus 272 ~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 272 MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEc
Confidence 99987642221111112224589999998766554 344 455566665443 33333444567889998 77776654
Q ss_pred C---CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 253 L---GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 253 d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+ ..|.+||+.+++. ..+.... ......|+|||++|+.++.
T Consensus 351 ~~g~~~I~~~dl~~g~~-~~Lt~~~---~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 351 NGGQQHIAKQDLATGGV-QVLTDTF---LDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred cCCCceEEEEECCCCCe-EEeCCCC---CCCCceECCCCCEEEEEEc
Confidence 3 3588899988764 3343221 3456789999999988764
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=9.7e-11 Score=89.55 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=94.6
Q ss_pred cEEEEecC-CceeEEEecC--CCceeEEEEecCCCEEE---EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeE
Q 022324 133 VMRLWSLE-GYKCVEEYSL--PNAASLVDFDFDESKIV---GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA 206 (299)
Q Consensus 133 ~i~iwd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~l~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (299)
...+|.++ ....+..+.. ...+..++|+|+++.++ +..+..|.+||++.. .+......... .+.|+|.+.++
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~-~i~~~~~~~~n-~i~wsP~G~~l 115 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGK-KIFSFGTQPRN-TISWSPDGRFL 115 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCccc-EeEeecCCCce-EEEECCCCCEE
Confidence 34555542 2233444443 33466699999999876 335679999999743 33333333333 46999999998
Q ss_pred EEecC---CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC------CCcEEEEeCCCCceEEEee
Q 022324 207 VVGCE---DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLR 271 (299)
Q Consensus 207 ~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~~~~~~~~ 271 (299)
+.++. .|.|.+||.++.+.+.... |. .++.++|+|+ ++++++.. |+.++||+. +|+.+....
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecc
Confidence 88764 4679999999888887773 33 3789999999 99888874 788999998 477776554
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.9e-10 Score=98.54 Aligned_cols=185 Identities=14% Similarity=-0.011 Sum_probs=121.9
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeC---CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCC--eEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVG---DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RIC 175 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~--~i~ 175 (299)
.+.+..|...+....| |++ .|+..+. +..|.+||+.+++...............|+||++.|+ .+.++ .|+
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 4556678888999999 676 6666553 4689999999887644333333444589999999876 34444 588
Q ss_pred EEecCCceee-eeccCCccceeeeeccCCCeEEEecC-C--CcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022324 176 IWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCE-D--GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (299)
Q Consensus 176 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (299)
+||+.++... +....+ .....+|++++..++..+. + ..|.++|+..++.. .+..+...+....|+|+ +.|+..
T Consensus 274 ~~d~~~~~~~~Lt~~~~-~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTTTRLTDSPA-IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCceEEccCCCC-ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEE
Confidence 8898876422 222222 2223589999998776553 3 35888888765543 33333455677889999 777776
Q ss_pred eCC---CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 251 SSL---GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 251 ~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
+.+ ..|.+||+..+. ...+... . .+....|+|||++|+..+
T Consensus 352 ~~~~~~~~i~~~d~~~~~-~~~lt~~-~--~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSG-ERILTSG-F--LVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EcCCCceEEEEEECCCCc-eEeccCC-C--CCCCCeECCCCCEEEEEE
Confidence 543 368888986543 3344322 2 467789999999887644
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=6.5e-11 Score=94.02 Aligned_cols=179 Identities=10% Similarity=0.126 Sum_probs=125.9
Q ss_pred CeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEec--CCCceeEEEEecCCCE-EEEEcCCeEEEEecCCce-----
Q 022324 114 GVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYS--LPNAASLVDFDFDESK-IVGLIGTRICIWRRNGLR----- 183 (299)
Q Consensus 114 ~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-l~~~~d~~i~v~d~~~~~----- 183 (299)
.+..++|+.. .++++..|-+|++||-+. ++...++ .+.++.+++|-|.+.. ++.+-.+.|.+|......
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 4555667444 788999999999999775 5544554 3456777999997654 555555678899765321
Q ss_pred ---------eeeeccCCccceeeeeccCCCeEEEecC-CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC
Q 022324 184 ---------SVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (299)
Q Consensus 184 ---------~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (299)
.++..........+.|++++..+++++. |..|.|||+.++..+.......+.++-+.|+|| .+|++++-
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence 1222222222335788999888888764 677999999998876655444566899999999 99999999
Q ss_pred CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 253 LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 253 dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
|+..++|...+...-.......+ .|+..+|+|+|++|+-++
T Consensus 259 davfrlw~e~q~wt~erw~lgsg--rvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 259 DAVFRLWQENQSWTKERWILGSG--RVQTACWSPCGSFLLFAC 299 (445)
T ss_pred cceeeeehhcccceecceeccCC--ceeeeeecCCCCEEEEEE
Confidence 99999996544332222323333 799999999999877554
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=2.2e-11 Score=97.36 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=123.3
Q ss_pred EEEEEeCC--CcEEEEecCCceeEEEecC----------CCceeEEEEecC--CCEEE-EEcCCeEEEEecCCcee---e
Q 022324 124 LILTGVGD--KVMRLWSLEGYKCVEEYSL----------PNAASLVDFDFD--ESKIV-GLIGTRICIWRRNGLRS---V 185 (299)
Q Consensus 124 ~l~s~~~d--g~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~~~--~~~l~-~~~d~~i~v~d~~~~~~---~ 185 (299)
.+++|+.. ..+++||++..+.+.+-+. +-....+.|-+. ...++ ++.-+.+++||.+.++. .
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 67779999 8999999998865544332 111223677666 66777 99999999999987653 3
Q ss_pred eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee-ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022324 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 263 (299)
+...+.... .+...|.++.+++|..-+.+..||.+.++.+.. +.+..+.|.++..+|. .++++++-|..|||+|+.+
T Consensus 243 fd~~E~~is-~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 243 FDFLENPIS-STGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred eccccCcce-eeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 333344433 568889999999999999999999999988776 7788999999999999 9999999999999999999
Q ss_pred CceEEEeeccCCCCcEEEEEccCC
Q 022324 264 DQRVATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 264 ~~~~~~~~~~~~~~~i~~~~~s~~ 287 (299)
.+++...-... .++++-+.++
T Consensus 322 rkll~kvYvKs---~lt~il~~~~ 342 (412)
T KOG3881|consen 322 RKLLHKVYVKS---RLTFILLRDD 342 (412)
T ss_pred chhhhhhhhhc---cccEEEecCC
Confidence 77665554333 4666666543
No 214
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.5e-10 Score=101.39 Aligned_cols=187 Identities=13% Similarity=0.149 Sum_probs=127.4
Q ss_pred eEEeeccccCeeEEEe---cC--CEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-----------------------
Q 022324 105 IDQWKAHSVGVDQCRM---KR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL----------------------- 156 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~---~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------------- 156 (299)
++.+.+|..++..+.+ +. .++++++.||.|++||...++++.++..+.++..
T Consensus 50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~ 129 (792)
T KOG1963|consen 50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI 129 (792)
T ss_pred hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeeccccee
Confidence 4566899999999877 23 2888999999999999999888777754322222
Q ss_pred ------------------------------------EEEecCCCEEEEEcCCeEEEEecCCceeeeec---cCCc--cce
Q 022324 157 ------------------------------------VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS---REGT--FMK 195 (299)
Q Consensus 157 ------------------------------------~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~---~~~~--~~~ 195 (299)
+..++.+.......+..+.+|+.......... ...+ ...
T Consensus 130 ~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t 209 (792)
T KOG1963|consen 130 LTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNIT 209 (792)
T ss_pred eeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccce
Confidence 11122222222223334455555442211110 0111 124
Q ss_pred eeeeccCCCeEEEecCCCcEEEEEcCC----cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022324 196 GLCMRYFDPEAVVGCEDGTARVFDMYS----RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL 270 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 270 (299)
+.+++|.+.++++|..||+|.+|.--. ......+.-|...|++++|+++ .+|.+|+..|.+.+|.+.+++ +++
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqf 287 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQF 287 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--ccc
Confidence 578999999999999999999996432 1223455568889999999999 999999999999999999988 344
Q ss_pred eccCCCCcEEEEEccCCCCeEEee
Q 022324 271 RSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 271 ~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
-+.-+. +|..+.+|||+.+.+..
T Consensus 288 LPRLgs-~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 288 LPRLGS-PILHIVVSPDSDLYSLV 310 (792)
T ss_pred ccccCC-eeEEEEEcCCCCeEEEE
Confidence 333332 99999999999876543
No 215
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.3e-10 Score=97.82 Aligned_cols=185 Identities=11% Similarity=0.062 Sum_probs=116.5
Q ss_pred EEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEE-
Q 022324 106 DQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIW- 177 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~- 177 (299)
+.+..+...+.+..| |++ .|+..+.+ ..|.+||+.+++.......+.......|+||++.|+ .+.++...+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 344567778888888 676 66665543 359999999887654333343444689999999887 4556655554
Q ss_pred -ecCCce-eeeeccCCccceeeeeccCCCeEEEec-CCCcEEEEEc--CCcceeeeccccCCceeEEEeCCC-CeEEEEe
Q 022324 178 -RRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDM--YSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (299)
Q Consensus 178 -d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~--~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (299)
|+.+.. ..+..+.+. .....|++++..++..+ .++...+|.+ ..++... +..........+|+|+ ++++..+
T Consensus 269 ~d~~~~~~~~lt~~~~~-~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 269 VNADGSGLRRLTQSSGI-DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred EECCCCCcEECCCCCCC-CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEE
Confidence 554443 222222222 22357999999876544 3455566654 4444322 2222233456789999 8888776
Q ss_pred CCC---cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 252 SLG---SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 252 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.++ .|.+||+.+++.. .+... . ......|+|||++|+.++.
T Consensus 347 ~~~g~~~I~v~d~~~g~~~-~lt~~-~--~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVT-ALTDT-T--RDESPSFAPNGRYILYATQ 390 (427)
T ss_pred ccCCcEEEEEEECCCCCeE-EccCC-C--CccCceECCCCCEEEEEEe
Confidence 554 5999999887643 33322 2 3467899999999887763
No 216
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.33 E-value=9.5e-13 Score=114.39 Aligned_cols=179 Identities=17% Similarity=0.274 Sum_probs=131.3
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
++.+.+|..+|+|+.| ..+ ++++|+.|..++||.++++.++...++|+..+. ++.+.+...++ ++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 4455799999999999 344 999999999999999999999999999998887 99988888888 9999999999999
Q ss_pred Cce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee--------------ecc--------------
Q 022324 181 GLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--------------IIR-------------- 230 (299)
Q Consensus 181 ~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------------~~~-------------- 230 (299)
.+. .++.+|++.+. .++++|.. +.+.||++++||.+-...+. .+.
T Consensus 263 ~~~pvsvLrghtgavt-aiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVT-AIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCchHHHHhcccccee-eeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 875 66778888766 34666644 77889999999987110000 000
Q ss_pred --ccCCceeEEEeCCC------------CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCe
Q 022324 231 --MHCAPVTSLSLSED------------QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHM 290 (299)
Q Consensus 231 --~~~~~i~~~~~~~~------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 290 (299)
........+++... .+.+++-.+-.+.+|++.+|.+++.+.+|.. .+..+.++|-+..
T Consensus 338 ~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPR 409 (1113)
T ss_pred cccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcH
Confidence 00011112222222 2333333455688899999999999999988 8899999885443
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.33 E-value=6.1e-10 Score=93.56 Aligned_cols=170 Identities=13% Similarity=0.073 Sum_probs=119.7
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeecc
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 201 (299)
++++-..++.|.+.|..+.+.+..+........ +.++||+++++ ++.||.|.++|+.+.+.+.....+.....+++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 445667789999999999999999987655443 88999999988 8899999999999998666666666566789999
Q ss_pred CCCeEEEe-cCCCcEEEEEcCCcceeeecccc-------CCceeEEEeCCC-C-eEEEEeCCCcEEEEeCCCCceE--EE
Q 022324 202 FDPEAVVG-CEDGTARVFDMYSRKCSQIIRMH-------CAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRV--AT 269 (299)
Q Consensus 202 ~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~--~~ 269 (299)
++.+++++ ..++.+.++|.++.+.++.+... ...+..+..+|. . ++++--+.+.|.+.|....+.+ ..
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 99997765 46899999999999988887532 345677777777 5 5555566688888898765543 33
Q ss_pred eeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 270 LRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 270 ~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+... . ......|+|+++|++++..
T Consensus 168 i~~g-~--~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 168 IKVG-R--FPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EE---T--TEEEEEE-TTSSEEEEEEG
T ss_pred eccc-c--cccccccCcccceeeeccc
Confidence 3332 2 6889999999999988754
No 218
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.31 E-value=6e-11 Score=91.56 Aligned_cols=181 Identities=15% Similarity=0.175 Sum_probs=124.6
Q ss_pred ccccCeeEEEe-cCC------EEEEEeCCCcEEEEecCCcee----EEEec------CCCceeEEEEec-CCCEEE-EEc
Q 022324 110 AHSVGVDQCRM-KRG------LILTGVGDKVMRLWSLEGYKC----VEEYS------LPNAASLVDFDF-DESKIV-GLI 170 (299)
Q Consensus 110 ~h~~~i~~~~~-~~~------~l~s~~~dg~i~iwd~~~~~~----~~~~~------~~~~~~~~~~~~-~~~~l~-~~~ 170 (299)
.|.-+++.+.| |+. +|+|.+ ..+++|.+...+. ...+. ...+..+..|+. +.+++. ++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 68889999988 432 466554 4899999874221 11111 122334477765 445566 788
Q ss_pred CCeEEEEecCCce-----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcce---eeeccccCCceeEEEe
Q 022324 171 GTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLSL 241 (299)
Q Consensus 171 d~~i~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~i~~~~~ 241 (299)
|-+..|||++++. ..+-.|...+.. ++|...+.. +++.+.||.+++||++..+- +.+-.....+...++|
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~D-Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYD-IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeE-EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999862 233445554442 355554443 89999999999999997543 3333233678899999
Q ss_pred CCC--CeEEEEeCC-CcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCC-CCeEEeee
Q 022324 242 SED--QLIISGSSL-GSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQF-LHMLFFLC 295 (299)
Q Consensus 242 ~~~--~~l~~~~~d-g~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~s~s 295 (299)
++. +++|+-..| ..|.|.|++. ..++.+++.|.. .|++++|.|. ...+++++
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a--~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA--SVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc--cccceEecCCCCceeeecC
Confidence 975 788876654 4699999987 567899999998 9999999995 45677765
No 219
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.31 E-value=6.3e-10 Score=93.02 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=111.6
Q ss_pred EEEEeCCCcEEEEecCC-ce--eEEEecCCCceeEEEEecCCCEEE-E-EcCCeEEEEecCC-cee-eee-ccCCcccee
Q 022324 125 ILTGVGDKVMRLWSLEG-YK--CVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG-LRS-VFP-SREGTFMKG 196 (299)
Q Consensus 125 l~s~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~~i~v~d~~~-~~~-~~~-~~~~~~~~~ 196 (299)
+++...++.|++|++.+ ++ .+..++.......++++|++++|+ + ..++.|.+|++.. +.. ... ........-
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 34457789999999964 43 556665555566699999999886 4 4578999999973 221 111 111112234
Q ss_pred eeeccCCCeEEEec-CCCcEEEEEcCC-cc---eeeeccccCCceeEEEeCCC-CeEE-EEeCCCcEEEEeCCCCceEE-
Q 022324 197 LCMRYFDPEAVVGC-EDGTARVFDMYS-RK---CSQIIRMHCAPVTSLSLSED-QLII-SGSSLGSIAISGLSSDQRVA- 268 (299)
Q Consensus 197 ~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~---~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~dg~i~iwd~~~~~~~~- 268 (299)
++++++++.+++++ .++.|.+|++.+ +. .+..+ .+...+..++++|+ ++++ +...++.|.+||+.+...+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 68889999877665 488999999974 22 22222 22344677889998 7665 45567999999997643221
Q ss_pred ----EeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 269 ----TLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 269 ----~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
......+. ....++|+|+|++|+++..
T Consensus 164 ~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 164 QEPAEVTTVEGA-GPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred cCCCceecCCCC-CCceEEECCCCCEEEEEec
Confidence 11111122 5688999999999988764
No 220
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=5.7e-11 Score=95.91 Aligned_cols=174 Identities=20% Similarity=0.239 Sum_probs=126.4
Q ss_pred hhhccccceeecCcee--eEEe-----------eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC--
Q 022324 89 LAMKHHRFALEEGRID--IDQW-----------KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-- 151 (299)
Q Consensus 89 ~~~~~~~~~l~~g~~~--~~~~-----------~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-- 151 (299)
++++.++..++.|..+ ++++ ..|.+.|.++.| +|+ .|++-+.| ..+||+.+++..+......
T Consensus 150 vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k 228 (398)
T KOG0771|consen 150 VAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSK 228 (398)
T ss_pred EEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCccc
Confidence 4566666677776554 4444 479999999999 777 99999999 9999999999776655422
Q ss_pred CceeE-EEEecCC---CEE-E--EEcCCeEEEEecCCce-----eeeec-cCCccceeeeeccCCCeEEEecCCCcEEEE
Q 022324 152 NAASL-VDFDFDE---SKI-V--GLIGTRICIWRRNGLR-----SVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (299)
Q Consensus 152 ~~~~~-~~~~~~~---~~l-~--~~~d~~i~v~d~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 218 (299)
+.... +.|+.++ .+. + ....+.|..||+.... ...+. ........++++.++++++.|+.||.|.++
T Consensus 229 ~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~ 308 (398)
T KOG0771|consen 229 DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIY 308 (398)
T ss_pred chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEE
Confidence 22333 7777666 332 2 3334567777664321 11111 112234468999999999999999999999
Q ss_pred EcCCcceeeecc-ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022324 219 DMYSRKCSQIIR-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 219 d~~~~~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 263 (299)
+..+-+.++..+ .|...|+.+.|+|+ +++++.+.|....+..+.-
T Consensus 309 ~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 309 DAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999887776665 79999999999999 9999999999998887754
No 221
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=3.5e-12 Score=104.62 Aligned_cols=258 Identities=12% Similarity=0.103 Sum_probs=172.0
Q ss_pred hccCccchhhHHHhhhhHHHHhh-----hhhHHHHHHhhhc-CCCCC---CCchhhhh--------hhhhhhcc--ccce
Q 022324 37 SSLGFFDLVRCSAVCKSWNAIIN-----RCKLLQLLYCKLH-GFSNT---SGSSMRLH--------LEELAMKH--HRFA 97 (299)
Q Consensus 37 ~~~~h~~~v~~~~~~~~~~~l~~-----~~~~w~~~~~~~~-~~~~~---~d~~~~~~--------~~~~~~~~--~~~~ 97 (299)
++.+|.+.|..+.|+..|..+++ .+.+|+....+.. .+... .....|+. +.+-+.++ ....
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 34479999999999999999998 4668888444332 11111 11111100 00111111 1133
Q ss_pred eecCcee-eEEeeccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEec---CCCc--e--eEEEEecCCC-E
Q 022324 98 LEEGRID-IDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LPNA--A--SLVDFDFDES-K 165 (299)
Q Consensus 98 l~~g~~~-~~~~~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~--~--~~~~~~~~~~-~ 165 (299)
+.+|..+ .+.+..|.++|..++. |+. -|.+++.|+.+.-+|+.++.+...+. .+.. + ..++.+|... .
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 3444444 6677889999999988 544 89999999999999988765433332 2322 1 2377888766 4
Q ss_pred EE-EEcCCeEEEEecCCceee--------ee-cc--CCcccee--eeeccCCCeEEEecCCCcEEEEEcCC--c------
Q 022324 166 IV-GLIGTRICIWRRNGLRSV--------FP-SR--EGTFMKG--LCMRYFDPEAVVGCEDGTARVFDMYS--R------ 223 (299)
Q Consensus 166 l~-~~~d~~i~v~d~~~~~~~--------~~-~~--~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~--~------ 223 (299)
++ ++.|..+++||.+.-... +. .+ ......+ ++++..+..+++...|-.|+++.... |
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCC
Confidence 55 889999999998753211 11 11 0111223 34454566688888888999995432 2
Q ss_pred ----ce-eeeccccC--CceeEEEeC-CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 224 ----KC-SQIIRMHC--APVTSLSLS-ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 224 ----~~-~~~~~~~~--~~i~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
.. .+.+++|. ..|..+-|- |. .++++|+..|.|.||+-.+++.++-+++... -|+|+.-+|--..||++
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASS 454 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc--eEeccCCCCCCchhhcc
Confidence 11 22356664 457888876 66 9999999999999999999999999998887 89999999999999998
Q ss_pred ec
Q 022324 295 CF 296 (299)
Q Consensus 295 s~ 296 (299)
++
T Consensus 455 Gi 456 (559)
T KOG1334|consen 455 GI 456 (559)
T ss_pred CC
Confidence 75
No 222
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=1.2e-09 Score=94.51 Aligned_cols=186 Identities=14% Similarity=0.054 Sum_probs=121.0
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCC--eEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RIC 175 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~--~i~ 175 (299)
.+.+..+...+....| +++ +|+.+..+ ..|++||+.+++...............|+|+++.|+ . ..++ .|+
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 3444556667777788 666 66666543 479999999886554433333444589999999877 3 3333 699
Q ss_pred EEecCCcee-eeeccCCccceeeeeccCCCeEEEecC-CC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022324 176 IWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (299)
Q Consensus 176 v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (299)
+||+.++.. .+..+... .....|++++..++..+. ++ .|.++|+.+++.. .+..+...+..+.|+|+ ++++.+
T Consensus 262 ~~d~~~~~~~~l~~~~~~-~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~ 339 (417)
T TIGR02800 262 VMDLDGKQLTRLTNGPGI-DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFV 339 (417)
T ss_pred EEECCCCCEEECCCCCCC-CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEE
Confidence 999887642 22222221 112478888888765543 33 5778888766543 33334556778899998 888887
Q ss_pred eCCC---cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 251 SSLG---SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 251 ~~dg---~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+.++ .|.+||+.++.. ..+.... ......|+|+|++|+..+.
T Consensus 340 ~~~~~~~~i~~~d~~~~~~-~~l~~~~---~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 340 HREGGGFNIAVMDLDGGGE-RVLTDTG---LDESPSFAPNGRMILYATT 384 (417)
T ss_pred EccCCceEEEEEeCCCCCe-EEccCCC---CCCCceECCCCCEEEEEEe
Confidence 7765 789999987653 3332222 3345689999999887764
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=2.2e-11 Score=102.03 Aligned_cols=169 Identities=13% Similarity=0.148 Sum_probs=123.3
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee--ee------ccCC--
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV--FP------SREG-- 191 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~--~~------~~~~-- 191 (299)
-|+.++....|+-++++.|..+..+....+.+. +.+++-..+|+ |+.+|.|-+||.+....+ +. .+.+
T Consensus 147 Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 147 DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGD 226 (703)
T ss_pred cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCcccc
Confidence 355555556777789999999988887755554 88999888888 888999999999876411 11 1111
Q ss_pred ccceeeeeccCC--CeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCce
Q 022324 192 TFMKGLCMRYFD--PEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR 266 (299)
Q Consensus 192 ~~~~~~~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~ 266 (299)
....+.++.+.+ =.+++|..+|.+.|||+++.+++..-. ...-+|..+.|.+. +--+.......++|||-.+|+.
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~ 306 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP 306 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCc
Confidence 112234444444 448999999999999999988765442 45678999999764 3233334456789999999999
Q ss_pred EEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 267 VATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
...+.... .++.+|+-|++-+++++-
T Consensus 307 ~asiEpt~---~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 307 MASIEPTS---DLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred eeeccccC---CcCceeeecCCceEEEec
Confidence 98887766 689999999988887764
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.8e-10 Score=99.37 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=108.7
Q ss_pred eeEEEe-cCC-EEE-EEeCCC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC-C--eEEEEecCCcee-
Q 022324 115 VDQCRM-KRG-LIL-TGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG-T--RICIWRRNGLRS- 184 (299)
Q Consensus 115 i~~~~~-~~~-~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d-~--~i~v~d~~~~~~- 184 (299)
+....| |++ .|+ +.+.+| .|.+||+.+++.......+.......|+|+++.|+ .+.+ + .|+++|+.++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 345677 676 555 445555 58899999887665544444455699999999887 5543 3 566667766532
Q ss_pred eeeccCCccceeeeeccCCCeEEEecC-C--CcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc---EE
Q 022324 185 VFPSREGTFMKGLCMRYFDPEAVVGCE-D--GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS---IA 257 (299)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~s~~~-d--~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~---i~ 257 (299)
.+... +......+++|++..++..+. + ..|.+||+.+++.. .+.. ........|+|| ++|+.++.++. +.
T Consensus 325 ~lt~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~ 401 (429)
T PRK03629 325 RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLN 401 (429)
T ss_pred EeecC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence 22222 222224578999999766543 2 35888999877643 3322 122346789999 88888887764 67
Q ss_pred EEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022324 258 ISGLSSDQRVATLRSTDCTGHIICLMYPQ 286 (299)
Q Consensus 258 iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 286 (299)
++++ +|+....+..+.+ .+...+|+|
T Consensus 402 ~~~~-~G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 402 LVST-DGRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEC-CCCCeEECccCCC--CcCCcccCC
Confidence 7887 5766777777666 788889987
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.27 E-value=8.8e-11 Score=92.23 Aligned_cols=197 Identities=11% Similarity=0.069 Sum_probs=135.4
Q ss_pred hhccccceeecCcee------eEEeecc-----ccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCC-Cce
Q 022324 90 AMKHHRFALEEGRID------IDQWKAH-----SVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAA 154 (299)
Q Consensus 90 ~~~~~~~~l~~g~~~------~~~~~~h-----~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 154 (299)
.++|+++.++.-... ..+++-| -+.|.-+.| .+. .|.....|+.|.+|++...+....++.. .+.
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agl 94 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGL 94 (447)
T ss_pred eECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcc
Confidence 467777777655443 1122222 255666778 344 6667788999999999988887777754 444
Q ss_pred eEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCC---cEEEEEcCCcceeeec
Q 022324 155 SLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG---TARVFDMYSRKCSQII 229 (299)
Q Consensus 155 ~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~ 229 (299)
...+|+|+|+.+. ...+-.|.+|.+.+.....-.+..+.....++++++++.+..+.-. .+.+........+.++
T Consensus 95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred eeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 5599999998877 6668899999999987666555555557789999999966554321 2333333445566667
Q ss_pred cccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 230 RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 230 ~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
....-..+.+.|+|| +..+.+||---...+..++... .+..++|+|.+++|+.|+..
T Consensus 175 ~~dT~DltgieWsPd--------g~~laVwd~~Leykv~aYe~~l---G~k~v~wsP~~qflavGsyD 231 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPD--------GNWLAVWDNVLEYKVYAYERGL---GLKFVEWSPCNQFLAVGSYD 231 (447)
T ss_pred CCCcccccCceECCC--------CcEEEEecchhhheeeeeeecc---ceeEEEeccccceEEeeccc
Confidence 666667889999998 3345567754333333333322 68999999999999999864
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=3.4e-11 Score=100.49 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=111.9
Q ss_pred eEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeec--cC-CC-eEEEecCCCcEEE
Q 022324 144 CVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR--YF-DP-EAVVGCEDGTARV 217 (299)
Q Consensus 144 ~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~-~l~s~~~d~~i~i 217 (299)
....+.+|.+.+. ++|+.+|.+|+ |+.|-.+.|||.-..+.......++...+++.. |. ++ .+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 3456778888876 99999999999 999999999999866655555555555554443 33 22 2889999999999
Q ss_pred EEcCC----------cceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc-------eE---EEeeccCC
Q 022324 218 FDMYS----------RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ-------RV---ATLRSTDC 275 (299)
Q Consensus 218 wd~~~----------~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-------~~---~~~~~~~~ 275 (299)
+|+.. .+....+..|...|..++..|+ ..+.++++||+|+-+|++... +. ..+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99984 2234455578899999999987 789999999999999998632 11 11111112
Q ss_pred CCcEEEEEccCCC-CeEEeeeccc
Q 022324 276 TGHIICLMYPQFL-HMLFFLCFLP 298 (299)
Q Consensus 276 ~~~i~~~~~s~~g-~~l~s~s~~~ 298 (299)
...++..+|.. .+|++|+.-|
T Consensus 202 --elk~ltisp~rp~~laVGgsdp 223 (758)
T KOG1310|consen 202 --ELKCLTISPSRPYYLAVGGSDP 223 (758)
T ss_pred --eeeeeeecCCCCceEEecCCCc
Confidence 56888999954 5777887655
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.22 E-value=6.6e-10 Score=99.15 Aligned_cols=173 Identities=12% Similarity=0.079 Sum_probs=139.9
Q ss_pred cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-----EEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCc
Q 022324 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-----VDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGT 192 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~ 192 (299)
.+..++.+..+..+-+||...+.....++..+.... +.++++.-+++ ++.-+.|.+|+..... .....|++.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 455899999999999999998888877776654432 34466666777 8899999999987332 235667766
Q ss_pred cceeeeeccCCCeEEEecCCCcEEEEEcCCcceee-eccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEee
Q 022324 193 FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLR 271 (299)
Q Consensus 193 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (299)
.. .+.++-++.++++.++|..+++|++++.+... ..-+|...|..+.+.|+ .+++++.|.+.++|+. +++.+..+.
T Consensus 178 iF-~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~-~~~~l~~y~ 254 (967)
T KOG0974|consen 178 IF-SIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGV-NGTQLEVYD 254 (967)
T ss_pred eE-EEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceEEEEEec-ccceehhhh
Confidence 44 23566689999999999999999999988766 44489999999999999 8999999999999986 477777888
Q ss_pred ccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 272 STDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 272 ~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
.|... .|+.++.+++...+++++..
T Consensus 255 ~h~g~-~iw~~~~~~~~~~~vT~g~D 279 (967)
T KOG0974|consen 255 EHSGK-GIWKIAVPIGVIIKVTGGND 279 (967)
T ss_pred hhhhc-ceeEEEEcCCceEEEeeccC
Confidence 88776 89999999998888888754
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2.8e-09 Score=84.95 Aligned_cols=181 Identities=13% Similarity=0.088 Sum_probs=116.2
Q ss_pred cccCeeEEEe-cCC--EEEEEeCCCcEEEEecCC-c---e----------eEEEecCCCceeEEEEecCCCEEE--EEcC
Q 022324 111 HSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEG-Y---K----------CVEEYSLPNAASLVDFDFDESKIV--GLIG 171 (299)
Q Consensus 111 h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~-~---~----------~~~~~~~~~~~~~~~~~~~~~~l~--~~~d 171 (299)
.+..|+|++| |.. .|+.|.. +-|.+|.... + . .+....+|..+.++.|.+|+..++ +..|
T Consensus 139 sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCc
Confidence 4567999999 544 6777766 4578897642 1 1 122334667777899999999998 4457
Q ss_pred CeEEEEecCCceeeeec-cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-Ce-EE
Q 022324 172 TRICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL-II 248 (299)
Q Consensus 172 ~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~-l~ 248 (299)
..|.+||..++..+--. ........+.|+|++.+++++..|+..++|+.....-........+.|....|+|. ++ |+
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLF 297 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEE
Confidence 79999999988643222 22222335799999999999999999999965533222222234558999999998 54 44
Q ss_pred EEeCCCcEEEEeCCC-Cc--------------eEEEee---ccCC----CCcEEEEEccCCCCeEEee
Q 022324 249 SGSSLGSIAISGLSS-DQ--------------RVATLR---STDC----TGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~-~~--------------~~~~~~---~~~~----~~~i~~~~~s~~g~~l~s~ 294 (299)
+.+..- ++|.+.- ++ ++..+. ...+ .+++.+++|+|.|.|||+.
T Consensus 298 ~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 298 ACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred EEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 444333 3443321 00 000010 0001 1378999999999999873
No 229
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.3e-08 Score=88.30 Aligned_cols=186 Identities=10% Similarity=-0.026 Sum_probs=115.9
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcCC--eEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RIC 175 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d~--~i~ 175 (299)
.+.+..+...+....| |++ .|+..+.+ ..|.+||+.+++...............|+|+++.|+ . ..++ .|+
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3444566777888888 676 66655533 368999999887654333333333589999999887 3 3344 688
Q ss_pred EEecCCceee-eeccCCccceeeeeccCCCeEEEec-CCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEE
Q 022324 176 IWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGC-EDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (299)
Q Consensus 176 v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (299)
++|+.++... +..... ......|++++..++..+ .++ .|.++|+.+++..... ..........|+|+ +.++..
T Consensus 271 ~~d~~~~~~~~lt~~~~-~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 271 VMDLASRQLSRVTNHPA-IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EEECCCCCeEEcccCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEE
Confidence 8999876522 222222 122347899998865544 333 5777788777643322 12223445789999 777666
Q ss_pred eC-CC--cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 251 SS-LG--SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 251 ~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+. ++ .|.++|+.+++. ..+... . ......|+|||++++..+.
T Consensus 349 ~~~~~~~~l~~~dl~tg~~-~~lt~~-~--~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSV-RILTDT-S--LDESPSVAPNGTMLIYATR 393 (430)
T ss_pred EccCCceEEEEEECCCCCE-EEccCC-C--CCCCceECCCCCEEEEEEe
Confidence 54 33 588899988764 333222 1 2234589999999887653
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=8.2e-09 Score=89.53 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=106.5
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc---CCeEEEEecCCcee-eeeccCCccceeeeeccCCCeE
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEA 206 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 206 (299)
..|.++|...............+....|+||++.|+ .+. +..|++||+.++.. .+....+... ..+|+|++..+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEE
Confidence 378888876544433333444566699999999988 543 45899999987753 3333333322 45899999886
Q ss_pred E-EecCCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CC--cEEEEeCCCCceEEEeeccCCCCcE
Q 022324 207 V-VGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGHI 279 (299)
Q Consensus 207 ~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i 279 (299)
+ +.+.++. |.+||+.+++. ..+..+........|+|| +.|+..+. +| .|+++|+..++. +.+..... .+
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~--~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG--RY 336 (435)
T ss_pred EEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC--cc
Confidence 4 5555554 77779887765 345455556678899999 77776663 33 688889876543 44443333 56
Q ss_pred EEEEccCCCCeEEeee
Q 022324 280 ICLMYPQFLHMLFFLC 295 (299)
Q Consensus 280 ~~~~~s~~g~~l~s~s 295 (299)
....|+|+|++|+..+
T Consensus 337 ~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 337 STPVWSPRGDLIAFTK 352 (435)
T ss_pred cCeEECCCCCEEEEEE
Confidence 7789999999998765
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.18 E-value=1.3e-10 Score=96.64 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=76.4
Q ss_pred ceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec
Q 022324 153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (299)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 229 (299)
.+...+|+||+++|+ .+.||.++|||..+.+ .+++..-+... ++||+|+++++++|++|..|.||.+...+.+..-
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-CvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-CVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE-EEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 344499999999999 9999999999998875 23333334433 6799999999999999999999999999999988
Q ss_pred cccCCceeEEEeC
Q 022324 230 RMHCAPVTSLSLS 242 (299)
Q Consensus 230 ~~~~~~i~~~~~~ 242 (299)
++|+..|+.++|+
T Consensus 371 qGHkSWVs~VaFD 383 (636)
T KOG2394|consen 371 QGHKSWVSVVAFD 383 (636)
T ss_pred cccccceeeEeec
Confidence 8999999999998
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=4.9e-09 Score=90.79 Aligned_cols=159 Identities=14% Similarity=0.022 Sum_probs=104.2
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc---CCeEEEEecCCcee-eeeccCCccceeeeeccCCCeE
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEA 206 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 206 (299)
..|.+||...............+....|+|+++.|+ .+. +..|++||+.++.. .+....+. .....|++++..+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~-~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI-NGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC-ccCceECCCCCEE
Confidence 368899986444433333444555699999999988 553 34799999987653 23323332 2245899999886
Q ss_pred E-EecCCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CCc--EEEEeCCCCceEEEeeccCCCCcE
Q 022324 207 V-VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGS--IAISGLSSDQRVATLRSTDCTGHI 279 (299)
Q Consensus 207 ~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~i 279 (299)
+ +.+.++ .|.+||+.+++.. .+..+.......+|+|| +.|+.++. +|. |+++|+.+++. ..+..... ..
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~--~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGN--YN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCC--Cc
Confidence 4 444444 5999999887654 44445555577899999 77776654 444 67777766653 33332222 45
Q ss_pred EEEEccCCCCeEEeee
Q 022324 280 ICLMYPQFLHMLFFLC 295 (299)
Q Consensus 280 ~~~~~s~~g~~l~s~s 295 (299)
...+|+|||++++..+
T Consensus 339 ~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 339 ARASVSPDGKKIAMVH 354 (433)
T ss_pred cCEEECCCCCEEEEEE
Confidence 5789999999988654
No 233
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=4.6e-09 Score=92.35 Aligned_cols=186 Identities=13% Similarity=0.163 Sum_probs=137.7
Q ss_pred eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCC--c--eeEEEecCC-CceeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022324 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG--Y--KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
..|+-.+++.++ +++ ++++|..||.|.+|.--. + .....+..| ..+..+.|+++|.+|+ |+.++.+.+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 356777888888 566 999999999999997432 1 123345544 5566699999999999 9999999999999
Q ss_pred CceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc-----------cCCceeEEEeCCC-CeEE
Q 022324 181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-----------HCAPVTSLSLSED-QLII 248 (299)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~-~~l~ 248 (299)
++...+-..-+....-+.+++++...+....|+.|.+....+-+...++.+ ..+-.+.+.++|. +.++
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 887555444444443457889999988888899999998765544433321 2345677889997 8899
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeccC-----C----CCcEEEEEccCCCCeEEee
Q 022324 249 SGSSLGSIAISGLSSDQRVATLRSTD-----C----TGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~----~~~i~~~~~s~~g~~l~s~ 294 (299)
-.+..|.|++||+-+.+.+..+..-. + .-.++.++.+..|.++++.
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 99999999999998877666553211 1 0157888888889998875
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=2.5e-10 Score=93.98 Aligned_cols=187 Identities=12% Similarity=0.077 Sum_probs=133.6
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEec-CCCc-eeEEEEecC--CCEEE-EEcCCeEEEE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNA-ASLVDFDFD--ESKIV-GLIGTRICIW 177 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~-~~~~~~~~~--~~~l~-~~~d~~i~v~ 177 (299)
.+.|..|.+.|+.+.| ..+ .|++|+.|..|.+||...++....+. +|.. +....|-|. .+.++ ++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3455899999999999 444 99999999999999999988887776 4433 333456553 34566 8999999987
Q ss_pred ecCCce-----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeecc---ccCC---ceeEEEeCCC-
Q 022324 178 RRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR---MHCA---PVTSLSLSED- 244 (299)
Q Consensus 178 d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~~~~- 244 (299)
.+.... .....|.+++. .+++.|..++ |.+++.|+.+.-+|++.......+. .+.. ...+++.+|.
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vh-klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVH-KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccc-eeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 765332 33455666655 4588888887 9999999999999998765433332 2222 4678888886
Q ss_pred -CeEEEEeCCCcEEEEeCCCCc------eEEEeeccC----CCCcEEEEEccCCCCeEE
Q 022324 245 -QLIISGSSLGSIAISGLSSDQ------RVATLRSTD----CTGHIICLMYPQFLHMLF 292 (299)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~----~~~~i~~~~~s~~g~~l~ 292 (299)
..+++|+.|-.+++||.+.-. .+..+..++ ....|++++++.++.-|.
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence 689999999999999987532 233333322 112799999997654433
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.14 E-value=1.2e-09 Score=85.98 Aligned_cols=183 Identities=16% Similarity=0.089 Sum_probs=114.4
Q ss_pred eccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC------------
Q 022324 109 KAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT------------ 172 (299)
Q Consensus 109 ~~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~------------ 172 (299)
..-.+.+..+.| |++ .|.+...|-.|.+|.+.+.+....-.......-++|+|++++.+ .+.-.
T Consensus 88 deg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 88 DEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred ccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 455677888888 676 78888899999999999877654333333444488889888876 44422
Q ss_pred ------------------------eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee
Q 022324 173 ------------------------RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (299)
Q Consensus 173 ------------------------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 228 (299)
.+.+||.--.-.++.-+.+-....+.|+|.++.++.|+.|+.+++.+--+.+...+
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence 12222221111111111222223468999999999999999988765322110000
Q ss_pred ------------------------------------------------------------cc------ccCCceeEEEeC
Q 022324 229 ------------------------------------------------------------IR------MHCAPVTSLSLS 242 (299)
Q Consensus 229 ------------------------------------------------------------~~------~~~~~i~~~~~~ 242 (299)
++ .....+.-++|+
T Consensus 248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs 327 (447)
T KOG4497|consen 248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS 327 (447)
T ss_pred hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence 00 011235568999
Q ss_pred CC-CeEEEEeC--CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 243 ED-QLIISGSS--LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 243 ~~-~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
+| .+++|-.+ -+.+-+||++..+....+... . +|....|+|....|+.+
T Consensus 328 ~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk-~--piraf~WdP~~prL~vc 379 (447)
T KOG4497|consen 328 CDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQK-H--PIRAFEWDPGRPRLVVC 379 (447)
T ss_pred CCceEEeeecCCCCceEEEEechhhhhhhhhhhc-c--ceeEEEeCCCCceEEEE
Confidence 99 66666543 356899999877655444333 3 89999999988777654
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=6.3e-09 Score=89.91 Aligned_cols=158 Identities=12% Similarity=0.041 Sum_probs=98.3
Q ss_pred CcEEEEecCCceeEEEe-cCCCceeEEEEecCCCEEE-EEcC---CeEEEEecCCcee-eeeccCCccceeeeeccCCCe
Q 022324 132 KVMRLWSLEGYKCVEEY-SLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPE 205 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 205 (299)
..|.++|.. +.....+ .....+...+|+||++.|+ .+.+ ..|++||+.+++. .+....+.. ....|+|++..
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc-cceEECCCCCE
Confidence 467777764 4433333 3344455699999999988 5432 3699999987753 232233332 24589999998
Q ss_pred EE-EecCCCcEEEEE--cCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CCcEEEEeC--CCCceEEEeeccCCCCc
Q 022324 206 AV-VGCEDGTARVFD--MYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGSIAISGL--SSDQRVATLRSTDCTGH 278 (299)
Q Consensus 206 l~-s~~~d~~i~iwd--~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~~ 278 (299)
++ +.+.++...+|. +..+. ...+..+........|+|| +.|+..+. +|...+|.+ .+++. ..+..... .
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~--~ 329 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGS--Y 329 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCC--C
Confidence 65 567777766665 44443 4445445555677889999 76665554 466666654 44432 33322222 3
Q ss_pred EEEEEccCCCCeEEeee
Q 022324 279 IICLMYPQFLHMLFFLC 295 (299)
Q Consensus 279 i~~~~~s~~g~~l~s~s 295 (299)
....+|+|||++|+..+
T Consensus 330 ~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 330 NTSPRISPDGKLLAYIS 346 (427)
T ss_pred cCceEECCCCCEEEEEE
Confidence 45678999999998665
No 237
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=3.3e-08 Score=85.83 Aligned_cols=183 Identities=12% Similarity=-0.001 Sum_probs=109.5
Q ss_pred eeccccCeeEEEe-cCC-EEEEEeC-CC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCC--eEEEEe
Q 022324 108 WKAHSVGVDQCRM-KRG-LILTGVG-DK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RICIWR 178 (299)
Q Consensus 108 ~~~h~~~i~~~~~-~~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~--~i~v~d 178 (299)
+..+...+....| |++ .|+..+. ++ .|.+||+.+++...............|+||++.|+ ...++ .|+++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 3445556777788 676 5655443 33 58888998877543322333333589999999887 44555 488888
Q ss_pred cCCceee-eeccCCccceeeeeccCCCeEEEec-CCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-
Q 022324 179 RNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGC-EDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS- 252 (299)
Q Consensus 179 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~- 252 (299)
+.++... +..... .....+|++++..++..+ .++ .|.++|+.+++..... .........+|+|| ++|+..+.
T Consensus 293 l~tg~~~~lt~~~~-~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 293 IATKALTRITRHRA-IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVNRT 370 (448)
T ss_pred CCCCCeEECccCCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEEec
Confidence 8776422 222221 222357899998865544 333 4666788776653321 12222345689999 77666554
Q ss_pred CC--cEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 253 LG--SIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 253 dg--~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
++ .|.++|+.+++. ..+.... ......|+|||++|+..+.
T Consensus 371 ~g~~~I~~~dl~~g~~-~~lt~~~---~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 371 NGKFNIARQDLETGAM-QVLTSTR---LDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CCceEEEEEECCCCCe-EEccCCC---CCCCceECCCCCEEEEEEe
Confidence 44 456678877764 3332221 2234579999998877553
No 238
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=3.3e-09 Score=82.27 Aligned_cols=176 Identities=12% Similarity=0.039 Sum_probs=120.0
Q ss_pred EEec-CC-EEEEEeCCCcEEEEecCCcee--EEEecCCCceeE-EEEecCCC-EEE-EEcCCeEEEEecCCce-eeee--
Q 022324 118 CRMK-RG-LILTGVGDKVMRLWSLEGYKC--VEEYSLPNAASL-VDFDFDES-KIV-GLIGTRICIWRRNGLR-SVFP-- 187 (299)
Q Consensus 118 ~~~~-~~-~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~l~-~~~d~~i~v~d~~~~~-~~~~-- 187 (299)
+.|. .+ .++++..+|.+.+-+...... +++++.|+...- ..|+.... ++. |+.|+.+..||++-+. .++.
T Consensus 127 lD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 127 LDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred EEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecc
Confidence 4553 33 788888999998655544433 347777775554 77766544 455 9999999999999543 3333
Q ss_pred -ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC---CeEEEEeCCCcEEEEeCC
Q 022324 188 -SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 188 -~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~iwd~~ 262 (299)
.|...+..+.+-.+.+.++++|+.|..|++||.++ ++++..-. -.+.|+.+..+|. .+|+++..+| .+|-+.+
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~ 284 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSS 284 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEec
Confidence 34444444555556666899999999999999994 66665543 3477999999997 3466666666 6777766
Q ss_pred CC--c---eEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 263 SD--Q---RVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 263 ~~--~---~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
.+ + .+...+.|.. -...-.|......|++||+|
T Consensus 285 ~~~~e~~~~~~s~~~hdS--l~YG~DWd~~~~~lATCsFY 322 (339)
T KOG0280|consen 285 DKVLEFQIVLPSDKIHDS--LCYGGDWDSKDSFLATCSFY 322 (339)
T ss_pred ccccchheeeeccccccc--eeeccccccccceeeeeecc
Confidence 53 3 3344455555 56666776666789999876
No 239
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.10 E-value=1.5e-08 Score=78.62 Aligned_cols=173 Identities=13% Similarity=0.063 Sum_probs=118.7
Q ss_pred ccCeeEEEe----cCC--EEEEEeCCCcEEEEecCCceeEEEecCC------C-ceeEEEEecCCCEEE-EEcCCeEEEE
Q 022324 112 SVGVDQCRM----KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP------N-AASLVDFDFDESKIV-GLIGTRICIW 177 (299)
Q Consensus 112 ~~~i~~~~~----~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~-~~~~~~~~~~~~~l~-~~~d~~i~v~ 177 (299)
++.+..+.| .++ .++-+..+|.|.++..........++.- . ...++.|++.+..++ +-.+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 345555655 233 6778888999999987654444444321 1 244588899888888 7778888855
Q ss_pred ecCCce----eeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcC-Ccceeee-ccccCCceeEEEeCCC--CeEE
Q 022324 178 RRNGLR----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMY-SRKCSQI-IRMHCAPVTSLSLSED--QLII 248 (299)
Q Consensus 178 d~~~~~----~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~-~~~~~~~-~~~~~~~i~~~~~~~~--~~l~ 248 (299)
+..... ..++.|+-. .+...++...+. +++|++|+.+..||++ .++.+.. .+.|...|.+|.-+|. .+++
T Consensus 149 ~~t~~~le~vq~wk~He~E-~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFE-AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred ecceeeeeeccccccccee-eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 444332 233444433 223455555555 7899999999999999 4444443 4578888999998865 7999
Q ss_pred EEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCC
Q 022324 249 SGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFL 288 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g 288 (299)
+|+.|..|++||.|+ ++++..-... + .|+.+.++|.-
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~v~-G--GVWRi~~~p~~ 265 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAKVG-G--GVWRIKHHPEI 265 (339)
T ss_pred EeccccceeeeehhcccCccccCccc-c--ceEEEEecchh
Confidence 999999999999994 6666544333 2 79999999853
No 240
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.1e-10 Score=96.17 Aligned_cols=217 Identities=11% Similarity=0.082 Sum_probs=144.3
Q ss_pred HhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCceeeEEeeccccC
Q 022324 35 IFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG 114 (299)
Q Consensus 35 i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~h~~~ 114 (299)
++.|.+|+..|+.++.-.+.+..++ ...|.++|+| ++.-..++ ........+|+.|+.+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiS----------------ASkDKTVKLW--Sik~EgD~---~~tsaCQfTY~aHkk~ 786 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFIS----------------ASKDKTVKLW--SIKPEGDE---IGTSACQFTYQAHKKP 786 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceee----------------ccCCceEEEE--EeccccCc---cccceeeeEhhhccCc
Confidence 4467788888888776666555554 3488999999 44433333 1223346788999999
Q ss_pred eeEEEecCCEEEEEeCCCcEEEEecCCceeEEEec---CCCceeE-EEEec-CCCEEE--EEcCCeEEEEecCCceee--
Q 022324 115 VDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASL-VDFDF-DESKIV--GLIGTRICIWRRNGLRSV-- 185 (299)
Q Consensus 115 i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~l~--~~~d~~i~v~d~~~~~~~-- 185 (299)
|..+.|-.+.-..++.||.|.+||.--+.++..+. .+..... .+.-. +...++ ++...+|+++|.+....+
T Consensus 787 i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 787 IHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred ccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence 99999843333334568999999988777665443 1222222 23322 333443 578899999999876521
Q ss_pred eec----cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEE-Ee
Q 022324 186 FPS----REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI-SG 260 (299)
Q Consensus 186 ~~~----~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i-wd 260 (299)
++. ..+....++++.+.++.++++-.+|.|.+.|.++|+.+..++.-......++--.|+.++....|.++.+ |-
T Consensus 867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeeh
Confidence 111 1123445678899999999999999999999999999888865444444454323377888888888888 87
Q ss_pred CCCCceEEEeec
Q 022324 261 LSSDQRVATLRS 272 (299)
Q Consensus 261 ~~~~~~~~~~~~ 272 (299)
.-.+....+.+.
T Consensus 947 aldgimh~q~kp 958 (1034)
T KOG4190|consen 947 ALDGIMHLQDKP 958 (1034)
T ss_pred hcCCeeeeccCC
Confidence 766655444443
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.8e-08 Score=84.98 Aligned_cols=187 Identities=12% Similarity=0.062 Sum_probs=128.4
Q ss_pred ccccCeeEEEe-cCC--EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCcee
Q 022324 110 AHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRS 184 (299)
Q Consensus 110 ~h~~~i~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~ 184 (299)
+|...-+.+.. +|+ .+++|..--.|++||+....+...-.....++. .-.+.|-..++ -..|..|-+..--+.-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 56667777877 677 688888999999999987655433333344444 33344444444 55666665543322211
Q ss_pred eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022324 185 VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 263 (299)
....+.- ..-++.+..+-.|+.++....|+-+++..|..+..+....+.++++..++- .+|++|+.+|.|..||.++
T Consensus 129 ~~RIP~~--GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 RTRIPKF--GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeecCcC--CccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 1111111 111344444444777777778999999999999999888889999999998 8999999999999999998
Q ss_pred CceEEEeeccCC---------CCcEEEEEccCCCCeEEeeeccc
Q 022324 264 DQRVATLRSTDC---------TGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 264 ~~~~~~~~~~~~---------~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
...+.++..... ...|++++|+-+|-.+++|+.-|
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G 250 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG 250 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence 776666643321 12599999999999999987544
No 242
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.05 E-value=1.9e-08 Score=91.72 Aligned_cols=215 Identities=16% Similarity=0.160 Sum_probs=138.4
Q ss_pred HhhccCccchhhHHHhhhhH-HHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceeecCcee--eEEeecc
Q 022324 35 IFSSLGFFDLVRCSAVCKSW-NAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID--IDQWKAH 111 (299)
Q Consensus 35 i~~~~~h~~~v~~~~~~~~~-~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~g~~~--~~~~~~h 111 (299)
+..+..|...|..+++++.. .++++ ...|+++|+|.. ++....+... ..+|.--
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~Fvs----------------gS~DGtVKvW~~-------~k~~~~~~s~rS~ltys~~ 1097 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVS----------------GSDDGTVKVWNL-------RKLEGEGGSARSELTYSPE 1097 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEE----------------ecCCceEEEeee-------hhhhcCcceeeeeEEEecc
Confidence 44455666666665555544 55555 448899999932 2222221111 3344445
Q ss_pred ccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCc--e-----eEEEec--CCCceeE-EEEec-CCC-EEE-EEcCCeEEE
Q 022324 112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY--K-----CVEEYS--LPNAASL-VDFDF-DES-KIV-GLIGTRICI 176 (299)
Q Consensus 112 ~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~-----~~~~~~--~~~~~~~-~~~~~-~~~-~l~-~~~d~~i~v 176 (299)
..++.++.+ .++ ++|.++.||.|++.+++-. + ...... ..+.++. -++.. ... .++ ++.-+.|..
T Consensus 1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence 677888877 444 9999999999999998752 1 111112 2233344 23322 223 455 888899999
Q ss_pred EecCCceee----eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCC----CeE
Q 022324 177 WRRNGLRSV----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED----QLI 247 (299)
Q Consensus 177 ~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~----~~l 247 (299)
||++..... .....|.+. .+++++.+..+++|...|.+.+||++=+.++..+. .+..+|..+..+|- ...
T Consensus 1178 ~D~r~~~~~w~lk~~~~hG~vT-Si~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVT-SIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred ecchhhhhHHhhhcCcccccee-EEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE
Confidence 999876422 222233333 46899999999999999999999999888877765 45578888888853 344
Q ss_pred EE-Ee-CCCcEEEEeCCCCceEEEeecc
Q 022324 248 IS-GS-SLGSIAISGLSSDQRVATLRST 273 (299)
Q Consensus 248 ~~-~~-~dg~i~iwd~~~~~~~~~~~~~ 273 (299)
++ ++ ..+.|.+|++.+|.+-..+...
T Consensus 1257 vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred EEecccCCCceeeeecccCcceEEEEcC
Confidence 44 44 5788999999998766666443
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.04 E-value=6.4e-08 Score=83.71 Aligned_cols=160 Identities=13% Similarity=-0.007 Sum_probs=104.2
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC---CeEEEEecCCce-eeeeccCCccceeeeeccCCCeE
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEA 206 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 206 (299)
..|.++|....................|+|+++.|+ +..+ ..|++||+.++. .......+... ..+|++++..+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEE
Confidence 367788876444433333333455689999999988 5443 489999998764 33333333322 35899999886
Q ss_pred E-EecCCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CC--cEEEEeCCCCceEEEeeccCCCCcE
Q 022324 207 V-VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGHI 279 (299)
Q Consensus 207 ~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i 279 (299)
+ +.+.++ .|.+||+.++... .+..+........|+|+ +.|+..+. ++ .|+++|+.+++. ..+..+.. .+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~--~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGG--YN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCC--Cc
Confidence 5 444444 5888999876543 33344444557789998 77766554 33 588888876664 34443333 67
Q ss_pred EEEEccCCCCeEEeeec
Q 022324 280 ICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 280 ~~~~~s~~g~~l~s~s~ 296 (299)
....|+|+|++++.++.
T Consensus 325 ~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHR 341 (417)
T ss_pred cCeEECCCCCEEEEEEc
Confidence 78899999999887653
No 244
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.04 E-value=9.6e-09 Score=82.90 Aligned_cols=147 Identities=14% Similarity=0.157 Sum_probs=104.8
Q ss_pred EEEEEeCCCcEEEEecCC----ceeEEEecCCCceeEEEEecCCCEEE-EEcCC---eEEEEecCCc-eeeeeccCCccc
Q 022324 124 LILTGVGDKVMRLWSLEG----YKCVEEYSLPNAASLVDFDFDESKIV-GLIGT---RICIWRRNGL-RSVFPSREGTFM 194 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~---~i~v~d~~~~-~~~~~~~~~~~~ 194 (299)
+++.+..+....++++.. .++...+..+.....+.+..+...+. +-.-| .+.+|..... ....-+|.....
T Consensus 76 llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~ 155 (390)
T KOG3914|consen 76 LVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLL 155 (390)
T ss_pred EEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhh
Confidence 777777777766777653 33455555565556666655554433 44444 4555554422 233344444444
Q ss_pred eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEee
Q 022324 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLR 271 (299)
Q Consensus 195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (299)
-++++++++.++++..|..|++-....-..+..+. +|...|..+++-++..|++||.|++|++||+.+|+++.++.
T Consensus 156 -dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 156 -DVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred -eeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccc
Confidence 35899999999999999999998877655666555 79999999999999889999999999999999999887664
No 245
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.03 E-value=1.8e-08 Score=87.74 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=112.6
Q ss_pred CCcEEEEecCCc-eeEEEecCCCceeEEEEecCC-CEEE-EEcCCeEEEEecCCceee--------eeccCCccceeeee
Q 022324 131 DKVMRLWSLEGY-KCVEEYSLPNAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLRSV--------FPSREGTFMKGLCM 199 (299)
Q Consensus 131 dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~d~~i~v~d~~~~~~~--------~~~~~~~~~~~~~~ 199 (299)
++.+.+|++... .+...+.....+.++.|+|.. .+++ |+.+|.|.+||++..... ...|..... .+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~-~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT-AVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE-EEEE
Confidence 357999999865 677788888889999999855 5566 889999999999876431 122333322 2344
Q ss_pred ccCCC--eEEEecCCCcEEEEEcCCcc-----------------------------------------------------
Q 022324 200 RYFDP--EAVVGCEDGTARVFDMYSRK----------------------------------------------------- 224 (299)
Q Consensus 200 ~~~~~--~l~s~~~d~~i~iwd~~~~~----------------------------------------------------- 224 (299)
..+.. .+++++.||.|..|+++.-.
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 44433 38999999999999875210
Q ss_pred ----e------eeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCC-CCceEEEeeccCCCCcEEEEEccCCCCeE
Q 022324 225 ----C------SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLS-SDQRVATLRSTDCTGHIICLMYPQFLHML 291 (299)
Q Consensus 225 ----~------~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~g~~l 291 (299)
. +..+..|.++|.++.++|- ..+++++ |.+++||... ...++..+..+.. .|++++|||.-.-+
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~--~v~~vaWSptrpav 456 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPD--YVTDVAWSPTRPAV 456 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccc--eeeeeEEcCcCceE
Confidence 0 1112246678888999886 5555555 9999999987 6677777777776 79999999987554
Q ss_pred Ee
Q 022324 292 FF 293 (299)
Q Consensus 292 ~s 293 (299)
++
T Consensus 457 F~ 458 (555)
T KOG1587|consen 457 FA 458 (555)
T ss_pred EE
Confidence 44
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.03 E-value=3.3e-09 Score=94.86 Aligned_cols=139 Identities=12% Similarity=0.104 Sum_probs=107.5
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeecc
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 201 (299)
++++|+.-+.|.+|+......-..+.+|++.+ .+.++.++++++ .+.|.++++|++.+.+..-..--++...+.....
T Consensus 147 ~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~ 226 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF 226 (967)
T ss_pred EEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence 99999999999999987322222466676554 599999999999 9999999999999886443333334443444444
Q ss_pred CCCeEEEecCCCcEEEEEcCCcceeeeccccC-CceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022324 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 202 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 263 (299)
....+++++.|-+.++|+.. ++.+..+..|. ..|..++..++ ..++|++.|+.+++||+..
T Consensus 227 ~~n~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 227 LPNRIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 44499999999999999765 56666777664 46899999988 8899999999999999853
No 247
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.5e-09 Score=91.18 Aligned_cols=166 Identities=18% Similarity=0.269 Sum_probs=121.9
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecC-------CceeEEEecCCCceeE-EEEecCCCEEEEEcCCeE
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE-------GYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRI 174 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i 174 (299)
+..|.||+..|..+.- .++ -+++++.|++|++|.++ +..|..+++.|...+. +.|-.+-+.+ ++.||.|
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i-~ScD~gi 806 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI-ASCDGGI 806 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee-eeccCcc
Confidence 5677899999999855 444 89999999999999976 2347778888876665 8887666554 5678999
Q ss_pred EEEecCCcee----eeeccCCccceeeeeccCCCe-EEEe-cCCCcEEEEEcCCcceeeecc-----ccCCceeEEEeCC
Q 022324 175 CIWRRNGLRS----VFPSREGTFMKGLCMRYFDPE-AVVG-CEDGTARVFDMYSRKCSQIIR-----MHCAPVTSLSLSE 243 (299)
Q Consensus 175 ~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~-l~s~-~~d~~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~~~ 243 (299)
++||.--+.. ......+....+.|+...... +++| +...+|+++|.+..+-..+++ +.+..+.++++.|
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999754431 112223333445566543333 4444 678899999999887666554 3445678999988
Q ss_pred C-CeEEEEeCCCcEEEEeCCCCceEEEee
Q 022324 244 D-QLIISGSSLGSIAISGLSSDQRVATLR 271 (299)
Q Consensus 244 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (299)
. +.++++-.+|+|.+.|.++|+.+..++
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 7 899999999999999999999877654
No 248
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=2.5e-07 Score=77.94 Aligned_cols=240 Identities=8% Similarity=0.050 Sum_probs=152.7
Q ss_pred cchhccCcHHHHHHHhhccC-ccchhhHHHhhhhHHHHhhhhhHHHHHHhhhcCCCCCCCchhhhhhhhhhhccccceee
Q 022324 21 RATIESLNGDIICMIFSSLG-FFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALE 99 (299)
Q Consensus 21 ~~~~~~~~~~~~~~i~~~~~-h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~ 99 (299)
...+..|+.++......+.. .+.. .+..||.+..+.|- +. +...+++.
T Consensus 104 ~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~ar------------------------lv------~nev~f~~ 152 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAAR------------------------LV------SNEVQFYD 152 (566)
T ss_pred CCceeeeeeccceehhheehhhhcC-cccccccchhhhhh------------------------hh------cceEEEEe
Confidence 35566788777655555552 2222 37777777766663 11 01111112
Q ss_pred cCceeeEEeeccccCeeEEEe-cC-C--EEEE-----EeCCCcEEEEecCCceeEEEec----CCCceeEEEEecCCCEE
Q 022324 100 EGRIDIDQWKAHSVGVDQCRM-KR-G--LILT-----GVGDKVMRLWSLEGYKCVEEYS----LPNAASLVDFDFDESKI 166 (299)
Q Consensus 100 ~g~~~~~~~~~h~~~i~~~~~-~~-~--~l~s-----~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l 166 (299)
.+......-+-|...|+.+.+ +. . .+++ .+.-+.++||.......-..+. .....+.+.|++-+.-|
T Consensus 153 ~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 153 LGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL 232 (566)
T ss_pred cCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence 222222222446667777777 33 2 4443 4556789999876322211111 12234457777766543
Q ss_pred E--EEc--C---------CeEEEEecCCceeeeeccCCccceeeeeccCCCeE--EEecCCCcEEEEEcCCcceeeeccc
Q 022324 167 V--GLI--G---------TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA--VVGCEDGTARVFDMYSRKCSQIIRM 231 (299)
Q Consensus 167 ~--~~~--d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~s~~~d~~i~iwd~~~~~~~~~~~~ 231 (299)
+ ++. | .+++++++++....+..........+.|++.+..+ +-|-.-.++.+||++ +.++..+
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-- 309 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-- 309 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--
Confidence 2 333 2 37899999866666666533333356899999884 456778899999998 7777776
Q ss_pred cCCceeEEEeCCC-CeEEEEeC---CCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 232 HCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 232 ~~~~i~~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
..++=+++-|+|. ++++.++- -|.+-|||+.+.+++..+..... +-+.|+|||+++++++--|
T Consensus 310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t----t~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT----TVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc----eEEEEcCCCcEEEEEeccc
Confidence 3567788999998 88777765 57899999999888888876653 5579999999999987543
No 249
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=2.9e-09 Score=84.35 Aligned_cols=162 Identities=12% Similarity=0.093 Sum_probs=116.4
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce------eeeeccCCcccee
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR------SVFPSREGTFMKG 196 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~------~~~~~~~~~~~~~ 196 (299)
+-++.+.+..+-+-|+++|.. +.|.....+.+..|...+++++ |+.+|.|..+|++... ...--|...+...
T Consensus 226 yhfs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred eeecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 346667777788888887643 3455566677788888888888 9999999999998651 2222344444433
Q ss_pred eeeccCCCeEEEecCCCcEEEEEcCCcce---eeeccccCCceeEEE--eCCC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022324 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLS--LSED-QLIISGSSLGSIAISGLSSDQRVATL 270 (299)
Q Consensus 197 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~i~~~~--~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 270 (299)
--+.+.+++|++.+.+|+|++||++.-++ +.++.+|...-.-+- +.++ ..+++++.|...+||.++.|.++.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 34556788899999999999999997666 777777754333332 3355 78999999999999999999999888
Q ss_pred eccCCC--CcEEEEEccC
Q 022324 271 RSTDCT--GHIICLMYPQ 286 (299)
Q Consensus 271 ~~~~~~--~~i~~~~~s~ 286 (299)
...... .-+.+++|+.
T Consensus 385 pf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFDS 402 (425)
T ss_pred CCCCccccccccceehhc
Confidence 655431 1466777754
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=3e-07 Score=79.30 Aligned_cols=183 Identities=11% Similarity=0.017 Sum_probs=108.9
Q ss_pred eeccccCeeEEEe-cCC-E--E-EEEeCCC--cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc-CC--eEE-
Q 022324 108 WKAHSVGVDQCRM-KRG-L--I-LTGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-GT--RIC- 175 (299)
Q Consensus 108 ~~~h~~~i~~~~~-~~~-~--l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~--~i~- 175 (299)
+......+..-.| |++ . + ++...+| .|.+.++.+++...............|+|||+.|+ .+. +| .++
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~ 259 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFI 259 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeE
Confidence 3344445555577 665 2 2 2444444 57777888776554444444445589999999988 432 23 343
Q ss_pred -EEecCCc---e--eeeeccCCccceeeeeccCCCeEEEec-CCCcEEEE--EcCC-cceeeeccccCCceeEEEeCCC-
Q 022324 176 -IWRRNGL---R--SVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVF--DMYS-RKCSQIIRMHCAPVTSLSLSED- 244 (299)
Q Consensus 176 -v~d~~~~---~--~~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iw--d~~~-~~~~~~~~~~~~~i~~~~~~~~- 244 (299)
.|++..+ . .+.....+ .....+|+|++..|+..+ .+|...+| ++.. +.....+..+...+....|+||
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~-~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFG-TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEeecccCCCCcceEeecCCCC-CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 4666542 1 22222111 112358999999866544 45654555 4432 2233334344456778899999
Q ss_pred CeEEEEeCC---CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 245 QLIISGSSL---GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 245 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
+.|+..+.+ ..|.+||+.+++... +..... .+....|+|||++|+..
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~--~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPE--NKESPSWAIDSLHLVYS 388 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCC--CccceEECCCCCEEEEE
Confidence 777765543 369999998887543 332223 56788999999988753
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=1.6e-07 Score=81.48 Aligned_cols=158 Identities=16% Similarity=0.054 Sum_probs=101.4
Q ss_pred cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcC---CeEEEEecCCcee-eeeccCCccceeeeeccCCCeEE
Q 022324 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAV 207 (299)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d---~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 207 (299)
.|.++|...+................|+|+++.|+ .+.+ ..|++||+.++.. .+....+.. ....|+|++..++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~-~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLN-GAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCc-CCeEECCCCCEEE
Confidence 47777877554433334445556699999999988 5433 3799999987642 222222222 2358999999865
Q ss_pred -EecCCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CC--cEEEEeCCCCceEEEeeccCCCCcEE
Q 022324 208 -VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGHII 280 (299)
Q Consensus 208 -s~~~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~ 280 (299)
+...++ .|.++|+.+++.. .+..+........|+|| +.++..+. +| .|+++|+.+++.. .+..... ...
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~--~~~ 334 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGN--YNA 334 (430)
T ss_pred EEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC--Ccc
Confidence 444444 5888899877654 34444555667889998 76655543 33 5777888777643 3322222 345
Q ss_pred EEEccCCCCeEEeee
Q 022324 281 CLMYPQFLHMLFFLC 295 (299)
Q Consensus 281 ~~~~s~~g~~l~s~s 295 (299)
...|+|+|++|+..+
T Consensus 335 ~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 335 RPRLSADGKTLVMVH 349 (430)
T ss_pred ceEECCCCCEEEEEE
Confidence 578999999988654
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=2.3e-07 Score=80.61 Aligned_cols=158 Identities=16% Similarity=0.049 Sum_probs=99.6
Q ss_pred cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc-CC--eEEEEecCCcee-eeeccCCccceeeeeccCCCeEE
Q 022324 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-GT--RICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAV 207 (299)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-d~--~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 207 (299)
.|.++|....................|+||++.|+ .+. ++ .|+++|+.+++. .+....+.. ....|+|++..++
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~-~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN-GAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc-CCeeECCCCCEEE
Confidence 56667766544333334444555699999999988 443 22 689999987643 222222222 2458999999865
Q ss_pred -EecCCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CC--cEEEEeCCCCceEEEeeccCCCCcEE
Q 022324 208 -VGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGHII 280 (299)
Q Consensus 208 -s~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~i~ 280 (299)
+.+.++. |.++|+.+++.. .+..+.......+|+|| +.|+..+. ++ .|.++|+.+++.. .+..... ...
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~--~~~ 353 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGE--QNL 353 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCC--CCc
Confidence 4555664 778888877653 34344555678899999 76665543 44 4667788777643 3322222 334
Q ss_pred EEEccCCCCeEEeee
Q 022324 281 CLMYPQFLHMLFFLC 295 (299)
Q Consensus 281 ~~~~s~~g~~l~s~s 295 (299)
..+|+|||++|+..+
T Consensus 354 ~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 354 GGSITPDGRSMIMVN 368 (448)
T ss_pred CeeECCCCCEEEEEE
Confidence 578999999988754
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.91 E-value=4.6e-09 Score=98.89 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=115.0
Q ss_pred eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecC--CCceeEEEEecCCCEEE-EEcCCeEEEEecCCce
Q 022324 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (299)
Q Consensus 109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~ 183 (299)
+.|-..|.++.- |.. +.+||+.||.+++|....++.+..++. +..+..+.|+.+|+.+. +..||.+.+|......
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~ 2284 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKP 2284 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcc
Confidence 334445555544 333 899999999999999999988888773 33444499999999988 9999999999987332
Q ss_pred -eeeeccCCccceeeeeccCCCeEEEec---CCCcEEEEEcCCc---ceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022324 184 -SVFPSREGTFMKGLCMRYFDPEAVVGC---EDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (299)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (299)
...+.|... ...|.+-+..+++++ .++.+.+||.--. ..+. ..|.+.++++++-|. ++|++|+.+|.
T Consensus 2285 ~~s~qchnk~---~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2285 YTSWQCHNKA---LSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred eeccccCCcc---ccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCc
Confidence 222333322 335555555566553 5788999996532 2233 689999999999999 99999999999
Q ss_pred EEEEeCCCCceEEEee
Q 022324 256 IAISGLSSDQRVATLR 271 (299)
Q Consensus 256 i~iwd~~~~~~~~~~~ 271 (299)
|++||++..++.++++
T Consensus 2360 v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred EEEeehHHHHHHHHhh
Confidence 9999998776655543
No 254
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.91 E-value=2.5e-07 Score=71.25 Aligned_cols=170 Identities=10% Similarity=-0.004 Sum_probs=117.6
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE-EEcCCeEEEEecCCce-ee---eeccCCccceee
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-SV---FPSREGTFMKGL 197 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~---~~~~~~~~~~~~ 197 (299)
-+..++.|.++++.+++-+........+ -...++++++++++++ .+....|..|.+.... .. ............
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 5778889999999988755433322222 1244589999999999 7777899999997653 21 222222223345
Q ss_pred eeccCCCeEEEecCCCcEEEEEcCCcceee-----eccccCCceeEEEeCCC---CeEEEEeCCCcEEEEeCCCCceEEE
Q 022324 198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-----IIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSDQRVAT 269 (299)
Q Consensus 198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (299)
.|+..+..+|++.+||++.|||++.-.... +-..|.+.+..+.|++. .+|+..-.-+.+.+.|+++++..+.
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 777777779999999999999998643322 22368899999999964 5677777778899999999876665
Q ss_pred eeccCCC------CcEEEEEccCCCCeEEe
Q 022324 270 LRSTDCT------GHIICLMYPQFLHMLFF 293 (299)
Q Consensus 270 ~~~~~~~------~~i~~~~~s~~g~~l~s 293 (299)
+...... +.|..-.|+.++.-..+
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred EecCccccccccccccccccccCCCccccc
Confidence 5443321 24777777776654443
No 255
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.90 E-value=9e-07 Score=74.61 Aligned_cols=166 Identities=12% Similarity=0.071 Sum_probs=107.1
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecC
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRN 180 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~ 180 (299)
+..+......-..+.+ +++ ++++++.||.|.++|+.+.+.+.+++.......+++++||++++ ....+.+.++|.+
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 4444443333223456 666 88888999999999999999999999888888899999999988 4568999999998
Q ss_pred CceeeeeccC---------CccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceee-eccccCCceeEEEeCCC-CeEE
Q 022324 181 GLRSVFPSRE---------GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSED-QLII 248 (299)
Q Consensus 181 ~~~~~~~~~~---------~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~-~~l~ 248 (299)
+.+.+..... .... .+..++..+. +++.-+.+.|.+.|....+.+. .............|+|+ ++++
T Consensus 109 tle~v~~I~~~~~~~~~~~~Rv~-aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 109 TLEPVKTIPTGGMPVDGPESRVA-AIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp T--EEEEEE--EE-TTTS---EE-EEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred cccceeecccccccccccCCCce-eEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 8753322211 1222 2233455564 5555666888888877654332 22233456778999999 7655
Q ss_pred E-EeCCCcEEEEeCCCCceEEEee
Q 022324 249 S-GSSLGSIAISGLSSDQRVATLR 271 (299)
Q Consensus 249 ~-~~~dg~i~iwd~~~~~~~~~~~ 271 (299)
+ ...++.|.++|..+++.+..+.
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ecccccceeEEEeeccceEEEEee
Confidence 5 4567789999999888776653
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.83 E-value=1.2e-05 Score=67.75 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=112.4
Q ss_pred EEEe-cCC-EEEEEe-CCCcEEEEecCC-ceeEEE---ec-----------CCCceeEEEEecCCCEEEE--EcCCeEEE
Q 022324 117 QCRM-KRG-LILTGV-GDKVMRLWSLEG-YKCVEE---YS-----------LPNAASLVDFDFDESKIVG--LIGTRICI 176 (299)
Q Consensus 117 ~~~~-~~~-~l~s~~-~dg~i~iwd~~~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~l~~--~~d~~i~v 176 (299)
.+.+ +++ +|+++. .+|+|.++++.. +..... +. .......+.++|++++++. -....|.+
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 4555 555 666665 589999999986 443322 21 1122345899999998873 33558999
Q ss_pred EecCCce------eeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcC--Ccc--eeeeccc------cCCceeEE
Q 022324 177 WRRNGLR------SVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMY--SRK--CSQIIRM------HCAPVTSL 239 (299)
Q Consensus 177 ~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~--~~~--~~~~~~~------~~~~i~~~ 239 (299)
|++.... ..+....+....-+.+++++++++ +.-.++.|.++++. ++. .++.+.. .......|
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 9997654 122334444445578999998854 55568889999988 332 2222221 12257889
Q ss_pred EeCCC-CeEEEEe-CCCcEEEEeCC--CCc--eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 240 SLSED-QLIISGS-SLGSIAISGLS--SDQ--RVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 240 ~~~~~-~~l~~~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+++|| ++|.++. ..++|.+|++. +++ .+..+..... ..+.++++|+|++|+++..
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEET
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEec
Confidence 99999 7665554 57889999993 233 3344443333 6899999999999998864
No 257
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.82 E-value=1.7e-06 Score=71.88 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=117.6
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCC-eEEEEecCCce-eeeeccCCccceeeeec
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT-RICIWRRNGLR-SVFPSREGTFMKGLCMR 200 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~-~i~v~d~~~~~-~~~~~~~~~~~~~~~~~ 200 (299)
+++..|. |...+.+...+-.++ +.....+.-..+..+++-++ |..|| .+-+||.++.+ ..+...-+.+. .+.++
T Consensus 334 ~ia~VSR-GkaFi~~~~~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs 410 (668)
T COG4946 334 YIALVSR-GKAFIMRPWDGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVS 410 (668)
T ss_pred EEEEEec-CcEEEECCCCCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEc
Confidence 6666665 555666655444332 22333444466666666666 88888 99999999987 44444444443 56899
Q ss_pred cCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCC----cEEEEeCCCCceEEEeeccCC
Q 022324 201 YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG----SIAISGLSSDQRVATLRSTDC 275 (299)
Q Consensus 201 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~ 275 (299)
++++.++.+.....+-+.|+.++.....-+...+-|+.++|+|+ +++|-+--+| .|+++|+..++....-. ...
T Consensus 411 ~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta 489 (668)
T COG4946 411 PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA 489 (668)
T ss_pred CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence 99999999999999999999999876666667788999999999 9999887766 68999998776544332 222
Q ss_pred CCcEEEEEccCCCCeEEe
Q 022324 276 TGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 276 ~~~i~~~~~s~~g~~l~s 293 (299)
.=.+-+|.|+|++|.-
T Consensus 490 --~DfsPaFD~d~ryLYf 505 (668)
T COG4946 490 --YDFSPAFDPDGRYLYF 505 (668)
T ss_pred --cccCcccCCCCcEEEE
Confidence 3355689999998754
No 258
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.80 E-value=1.1e-07 Score=75.56 Aligned_cols=184 Identities=11% Similarity=0.101 Sum_probs=114.8
Q ss_pred ccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce-----eEEEecCCCc-------------eeEEEEecCCCE--E-EE
Q 022324 112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-----CVEEYSLPNA-------------ASLVDFDFDESK--I-VG 168 (299)
Q Consensus 112 ~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~-------------~~~~~~~~~~~~--l-~~ 168 (299)
.+-|.++.| ..| +|++|..+|.|-++.-.... ....++.|++ +..+.|.++++. + +.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 346788888 444 99999999999999754221 2233333322 233677766543 3 38
Q ss_pred EcCCeEEEEecCCceeee--------------------------------------eccCCccceeeeeccCCCeEEEec
Q 022324 169 LIGTRICIWRRNGLRSVF--------------------------------------PSREGTFMKGLCMRYFDPEAVVGC 210 (299)
Q Consensus 169 ~~d~~i~v~d~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~l~s~~ 210 (299)
+.|.+|++|.+....... ..|.-++. .++++.+...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN-SIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN-SISVNSDKETFLSA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee-eeeecCccceEeec-
Confidence 999999999886432100 00111111 12444444445654
Q ss_pred CCCcEEEEEcCCcc---eeeecccc-----CCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceE----EEeeccCCC
Q 022324 211 EDGTARVFDMYSRK---CSQIIRMH-----CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRV----ATLRSTDCT 276 (299)
Q Consensus 211 ~d~~i~iwd~~~~~---~~~~~~~~-----~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~ 276 (299)
+|=.|.+|++.--. .+-.++.+ ...|++..|+|. .+++-.++.|+|++-|++...+- +.+.....+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 56789999986322 12222222 357899999997 88999999999999999854321 111111110
Q ss_pred ----------CcEEEEEccCCCCeEEeeecc
Q 022324 277 ----------GHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 277 ----------~~i~~~~~s~~g~~l~s~s~~ 297 (299)
..|..+.|+++|+|+++-.+.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyl 293 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYL 293 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccc
Confidence 368889999999999987654
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.79 E-value=7.2e-08 Score=76.60 Aligned_cols=185 Identities=13% Similarity=0.171 Sum_probs=119.0
Q ss_pred ccCeeEEEe-c-CC--EEEEEeCCCcEEEEecCCce-----------------------------------eEEEec-CC
Q 022324 112 SVGVDQCRM-K-RG--LILTGVGDKVMRLWSLEGYK-----------------------------------CVEEYS-LP 151 (299)
Q Consensus 112 ~~~i~~~~~-~-~~--~l~s~~~dg~i~iwd~~~~~-----------------------------------~~~~~~-~~ 151 (299)
...|+.+.| + .+ .++..+.|.+|++|.+.... +.+.+. .|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 356788888 3 23 78888899999999875321 111111 24
Q ss_pred CceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeee---ccCCc------cceeeeeccCCCe-EEEecCCCcEEEEEc
Q 022324 152 NAASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFP---SREGT------FMKGLCMRYFDPE-AVVGCEDGTARVFDM 220 (299)
Q Consensus 152 ~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~---~~~~~------~~~~~~~~~~~~~-l~s~~~d~~i~iwd~ 220 (299)
...+. +.++.|...++.+.|=.|.+|++.-....+. ..... +....-|+|..-. ++-.+..|+|++-|+
T Consensus 164 tyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDm 243 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDM 243 (433)
T ss_pred eeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeec
Confidence 44443 8888888888888999999999874432221 11110 1111235555433 666778899999999
Q ss_pred CCcceee----ec------------cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC-CCCceEEEeeccCCC------
Q 022324 221 YSRKCSQ----II------------RMHCAPVTSLSLSED-QLIISGSSLGSIAISGL-SSDQRVATLRSTDCT------ 276 (299)
Q Consensus 221 ~~~~~~~----~~------------~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~------ 276 (299)
+...... .+ ..--..|..+.|+++ +++++-.. -+|++||+ ...+++.+++.|...
T Consensus 244 R~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~ 322 (433)
T KOG1354|consen 244 RQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCS 322 (433)
T ss_pred hhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence 8532110 11 111246888999998 88887654 57999999 456777777666531
Q ss_pred -------CcEEEEEccCCCCeEEeeecc
Q 022324 277 -------GHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 277 -------~~i~~~~~s~~g~~l~s~s~~ 297 (299)
..-..++|+-++.++++||+-
T Consensus 323 lYEnD~IfdKFec~~sg~~~~v~TGsy~ 350 (433)
T KOG1354|consen 323 LYENDAIFDKFECSWSGNDSYVMTGSYN 350 (433)
T ss_pred HhhccchhheeEEEEcCCcceEeccccc
Confidence 123567899899999999863
No 260
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=2e-08 Score=55.31 Aligned_cols=38 Identities=34% Similarity=0.563 Sum_probs=35.5
Q ss_pred cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022324 223 RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (299)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd 260 (299)
++++.++.+|..+|++++|+|+ .+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4677889999999999999999 9999999999999997
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=7.3e-08 Score=83.58 Aligned_cols=190 Identities=13% Similarity=0.117 Sum_probs=131.9
Q ss_pred eEEeeccccCeeEEEecCC--EEEEEeCCCcEEEEecCCceeEEEec---CCCceeEEEEecCCCEEE-EEcCCeEEEEe
Q 022324 105 IDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESKIV-GLIGTRICIWR 178 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d 178 (299)
-+++.||++.|.-+.|.++ .|-|...+|.|.+|-+-.|+....+. ..+-+.+++|+.+|..++ ...||.|.+=.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 4677999999999999544 89999999999999988776543332 233445599999999998 99999999988
Q ss_pred cCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCc-------ceee----eccccCCceeEEEeC-----
Q 022324 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-------KCSQ----IIRMHCAPVTSLSLS----- 242 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~----~~~~~~~~i~~~~~~----- 242 (299)
+.+.+.--+...+....-+-|+++...++.+-.+|.+.+||.+-. .+.- .+......|..+.|.
T Consensus 144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred eccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 877653222233322223468888888778888899999997521 0100 111122335556554
Q ss_pred ---CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 243 ---ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 243 ---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
|+ -.|+++-.+|.+.|..-.+...-..+... . .|....|+++|..|+.++..
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m--~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-M--KIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-c--EeecceecCCCcEEEEccCc
Confidence 46 68999999999888765443222222222 3 78999999999999998864
No 262
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=1.1e-05 Score=69.38 Aligned_cols=174 Identities=13% Similarity=-0.017 Sum_probs=108.3
Q ss_pred CeeEEEe-cCC-E-EEEEeC---CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-E-EcC--CeEEEEecCCce
Q 022324 114 GVDQCRM-KRG-L-ILTGVG---DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIG--TRICIWRRNGLR 183 (299)
Q Consensus 114 ~i~~~~~-~~~-~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~d--~~i~v~d~~~~~ 183 (299)
.+..-.| |++ . ++..+. +..|.++|+.+++...............|+||++.++ . +.+ ..|+++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 4555677 665 3 554443 3568999999887766555444455588999999877 3 223 478888987764
Q ss_pred e-eeeccCCccceeeeeccCCCeEEEec-CCC--cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC-----
Q 022324 184 S-VFPSREGTFMKGLCMRYFDPEAVVGC-EDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL----- 253 (299)
Q Consensus 184 ~-~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d----- 253 (299)
. .+....+. .....|+|++..++..+ ..+ .|.+.|+.+++..+.... ... ...|+|+ +.++..+..
T Consensus 269 ~~~LT~~~~~-d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 269 LTQITNYPGI-DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EEEcccCCCc-cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCccc
Confidence 2 22222221 11347999998865444 233 588888887766443321 111 2489999 766665543
Q ss_pred ----CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 254 ----GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 254 ----g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
..|.+.|+.+++. +.+.... ......|+|||+.++..+
T Consensus 345 ~~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 345 GKNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred CCCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCCEEEEEE
Confidence 3688889887764 3443322 233578999999887654
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.74 E-value=1.5e-05 Score=66.19 Aligned_cols=162 Identities=11% Similarity=0.081 Sum_probs=104.9
Q ss_pred CCCcEEEEecCCceeEEEecCCCce--------eEEEEecCCCEEE-EE-c-CCeEEEEecCCceeee-----------e
Q 022324 130 GDKVMRLWSLEGYKCVEEYSLPNAA--------SLVDFDFDESKIV-GL-I-GTRICIWRRNGLRSVF-----------P 187 (299)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~-~~-~-d~~i~v~d~~~~~~~~-----------~ 187 (299)
.+..|.+||..+++.+..+..+... ..++++|||++++ .. . +..|.+.|+.+.+.+. .
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~ 154 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP 154 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 5889999999999999988864332 2589999999887 44 2 6899999998753111 0
Q ss_pred c---------cCCccce---------------ee-e------e----cc-CCCeEEEecCCCcEEEEEcCC-----ccee
Q 022324 188 S---------REGTFMK---------------GL-C------M----RY-FDPEAVVGCEDGTARVFDMYS-----RKCS 226 (299)
Q Consensus 188 ~---------~~~~~~~---------------~~-~------~----~~-~~~~l~s~~~d~~i~iwd~~~-----~~~~ 226 (299)
. ..+.... ++ . - .+ ++..++.... |.|.+.|+.. .+..
T Consensus 155 t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 155 TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence 0 0000000 00 0 1 11 3444444444 8999999543 2222
Q ss_pred eeccc-------cCCceeEEEeCCC-CeEEEEe----------CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC
Q 022324 227 QIIRM-------HCAPVTSLSLSED-QLIISGS----------SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL 288 (299)
Q Consensus 227 ~~~~~-------~~~~i~~~~~~~~-~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g 288 (299)
..+.. ..+.+.-++++++ +.+.+.. ..+.|.++|..+++.+..+.... .+..++++|||
T Consensus 234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dg 310 (352)
T TIGR02658 234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDA 310 (352)
T ss_pred eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCC
Confidence 22211 1223344999988 6666532 12579999999999999998654 79999999999
Q ss_pred C-eEEeee
Q 022324 289 H-MLFFLC 295 (299)
Q Consensus 289 ~-~l~s~s 295 (299)
+ +|++.+
T Consensus 311 kp~lyvtn 318 (352)
T TIGR02658 311 KPLLYALS 318 (352)
T ss_pred CeEEEEeC
Confidence 9 777654
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.71 E-value=1.6e-08 Score=95.38 Aligned_cols=149 Identities=21% Similarity=0.241 Sum_probs=112.5
Q ss_pred cCeeEEEe-c-CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE----EEcCCeEEEEecCCce--
Q 022324 113 VGVDQCRM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV----GLIGTRICIWRRNGLR-- 183 (299)
Q Consensus 113 ~~i~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~~d~~i~v~d~~~~~-- 183 (299)
+.|+.+.| . ++.+..+..||-+.+|.+. .++....+.|+.... +.|-. ..++ .+.++.+.+||..-+.
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~ 2328 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN 2328 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc
Confidence 67777777 3 3489999999999999987 677777777776555 66654 3444 3446799999986442
Q ss_pred -eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022324 184 -SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (299)
Q Consensus 184 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (299)
.+-..|.+... +++..|..+.+++|+.+|.|.+||++..+.+..++. ++...++++|+..|.|+||++.
T Consensus 2329 s~v~~~H~~gaT-~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2329 SLVHTCHDGGAT-VLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred ceeeeecCCCce-EEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEcc
Confidence 33355555443 668888888899999999999999998887777754 3423789999999999999998
Q ss_pred CCceEEEeeccC
Q 022324 263 SDQRVATLRSTD 274 (299)
Q Consensus 263 ~~~~~~~~~~~~ 274 (299)
.-..++++...+
T Consensus 2399 ~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2399 EFGLLHTFPSEH 2410 (2439)
T ss_pred ccchhhcCchhh
Confidence 887777776543
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.67 E-value=5.6e-07 Score=76.28 Aligned_cols=133 Identities=9% Similarity=-0.023 Sum_probs=102.3
Q ss_pred cCCCEEE-EEcCCeEEEEecCCceeeeecc----CCccceeeee--------------------ccCCCeEEEecCCCcE
Q 022324 161 FDESKIV-GLIGTRICIWRRNGLRSVFPSR----EGTFMKGLCM--------------------RYFDPEAVVGCEDGTA 215 (299)
Q Consensus 161 ~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~--------------------~~~~~~l~s~~~d~~i 215 (299)
|...+++ ...||.+++||...++....-. .........| +-+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3456777 8899999999998765221110 0000001111 1111226778889999
Q ss_pred EEEEcCCcceeeecc--ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022324 216 RVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLF 292 (299)
Q Consensus 216 ~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 292 (299)
.+|+...++....+. .|.+.|+++.++.+ ..|-+++.|+.+..|+...+..+..+..... .+.+++.+|||+.|+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~--~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP--LVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC--ccceEEEcCCCCEEE
Confidence 999999999887776 78899999999888 8999999999999999999999999988887 899999999999999
Q ss_pred eee
Q 022324 293 FLC 295 (299)
Q Consensus 293 s~s 295 (299)
++|
T Consensus 161 ~as 163 (541)
T KOG4547|consen 161 TAS 163 (541)
T ss_pred ecc
Confidence 876
No 266
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.63 E-value=3.3e-07 Score=72.89 Aligned_cols=164 Identities=19% Similarity=0.209 Sum_probs=100.5
Q ss_pred cCceeeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE-EEecCCCceeE-EEEecCCCEEE-EEcCCeE
Q 022324 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-EEYSLPNAASL-VDFDFDESKIV-GLIGTRI 174 (299)
Q Consensus 100 ~g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i 174 (299)
.+-..+.++.+|.++|.++.| +.+ .|++|..|..+.+||+--.+-+ ....+|...+. +..-+--+.++ +..||.|
T Consensus 185 ~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i 264 (404)
T KOG1409|consen 185 NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGI 264 (404)
T ss_pred cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeE
Confidence 344448888999999999999 433 9999999999999998754432 34455544443 55555555666 9999999
Q ss_pred EEEecCCceeeeecc--------------------------------CCccceeeeeccCCCe--EEEecCCCcEEEEEc
Q 022324 175 CIWRRNGLRSVFPSR--------------------------------EGTFMKGLCMRYFDPE--AVVGCEDGTARVFDM 220 (299)
Q Consensus 175 ~v~d~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~--l~s~~~d~~i~iwd~ 220 (299)
-+|+.+........- -......+|....++. ..+-+..-.+++-|.
T Consensus 265 ~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~ 344 (404)
T KOG1409|consen 265 VVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDS 344 (404)
T ss_pred EEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecc
Confidence 999987533111000 0000011122211111 222222333444432
Q ss_pred CC-------cceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022324 221 YS-------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 221 ~~-------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 263 (299)
-. ..++..+..-...|+.+.+... .+|+|++.|..|+|||++.
T Consensus 345 c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 345 CYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 11 1234444333445999999888 8999999999999999863
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=3.6e-06 Score=72.71 Aligned_cols=161 Identities=11% Similarity=-0.018 Sum_probs=93.7
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCE--EE--EEcC--CeEEEEecCCce-eeeeccCCccceeeeeccCCC
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IV--GLIG--TRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDP 204 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~--~~~d--~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~ 204 (299)
..|.+.|...+..............-.|+|||+. ++ ...+ ..|++.++.+++ ..+....+... ...|+|++.
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCC
Confidence 3666777665544433333344455899999975 32 2223 378888998765 22232333322 358999999
Q ss_pred eEEEec-C----CCcEEEEEcCCc---ceeeeccccCCceeEEEeCCC-CeEEEEe-CCCcEEEE--eCCC-CceEEEee
Q 022324 205 EAVVGC-E----DGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAIS--GLSS-DQRVATLR 271 (299)
Q Consensus 205 ~l~s~~-~----d~~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~iw--d~~~-~~~~~~~~ 271 (299)
.|+..+ . +-.+..|++..+ +..+............+|+|| +.|+..+ .+|...+| ++.. +.....+.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 866543 2 223444776653 322222222234467899999 7666655 46655555 4432 23344444
Q ss_pred ccCCCCcEEEEEccCCCCeEEeee
Q 022324 272 STDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 272 ~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
.... .+....|+|||+.|+..+
T Consensus 324 ~~~~--~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 324 KKYR--NSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred cCCC--CccceeECCCCCEEEEEE
Confidence 4433 677889999999988654
No 268
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.61 E-value=5e-05 Score=63.91 Aligned_cols=171 Identities=10% Similarity=0.074 Sum_probs=109.1
Q ss_pred EEEEeCC----CcEEEEec--CCcee--EEEecCCCceeEEEEecCCCEEE-EEc----CCeEEEEecCCc--ee--eee
Q 022324 125 ILTGVGD----KVMRLWSL--EGYKC--VEEYSLPNAASLVDFDFDESKIV-GLI----GTRICIWRRNGL--RS--VFP 187 (299)
Q Consensus 125 l~s~~~d----g~i~iwd~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~----d~~i~v~d~~~~--~~--~~~ 187 (299)
++.|+.. +.|.+|++ ++++. +..+........++++|++++|. +.. ++.|..|++... .. +-.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566666 78988888 45554 33444445556699999999988 544 468999988754 21 111
Q ss_pred cc-CCccceeeeeccCCCeEEEec-CCCcEEEEEcCC-cceeee---cc----------ccCCceeEEEeCCC-CeEEEE
Q 022324 188 SR-EGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYS-RKCSQI---IR----------MHCAPVTSLSLSED-QLIISG 250 (299)
Q Consensus 188 ~~-~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~~~~~~---~~----------~~~~~i~~~~~~~~-~~l~~~ 250 (299)
.. .+....-+++.+++.+++++. .+|.+.++++.. +..... +. .......++.++|+ +++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 11 233333468888999977765 589999999986 333222 11 12345778999999 766665
Q ss_pred e-CCCcEEEEeCCCCc--e--EEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 251 S-SLGSIAISGLSSDQ--R--VATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 251 ~-~dg~i~iwd~~~~~--~--~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
. ....|.+|++.... + ...+....+. ..+.++|+|+|+++.+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEET
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEEEecC
Confidence 4 45679999997654 3 2334444433 7899999999999887654
No 269
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.61 E-value=2e-07 Score=51.20 Aligned_cols=35 Identities=20% Similarity=0.581 Sum_probs=31.5
Q ss_pred eeEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEe
Q 022324 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWS 138 (299)
Q Consensus 104 ~~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd 138 (299)
.++++++|.++|+++.| +++ +|++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36788999999999999 555 999999999999997
No 270
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=6.3e-06 Score=69.77 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=105.1
Q ss_pred cEEEEecCCceeEEEecCCCceeEEEEecCCCEEE---EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEe
Q 022324 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV---GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG 209 (299)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 209 (299)
++++.+++..++.-.+...+++..+.|+++++-++ |..=..+.+||++.. .++...++... .+-++|.+..++.+
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~egpRN-~~~fnp~g~ii~lA 329 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFPEGPRN-TAFFNPHGNIILLA 329 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCCCCCcc-ceEECCCCCEEEEe
Confidence 68888888556666666667777899999997755 566679999999876 34444555544 35789999996665
Q ss_pred cC---CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC------CCcEEEEeCCCCceEEEeeccCCCCcE
Q 022324 210 CE---DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLRSTDCTGHI 279 (299)
Q Consensus 210 ~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~i 279 (299)
+. .|.|-+||+.+.+.+..+.... -+-+.|+|| ++++|++. |+.++||+. +|..+..-.-.. ..
T Consensus 330 GFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s---EL 403 (566)
T KOG2315|consen 330 GFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS---EL 403 (566)
T ss_pred ecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH---hH
Confidence 54 4789999999988888886533 456789999 98888875 788999998 576665443222 24
Q ss_pred EEEEccC
Q 022324 280 ICLMYPQ 286 (299)
Q Consensus 280 ~~~~~s~ 286 (299)
..+.|-|
T Consensus 404 ~qv~W~P 410 (566)
T KOG2315|consen 404 LQVEWRP 410 (566)
T ss_pred hheeeee
Confidence 4455543
No 271
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.60 E-value=7.2e-07 Score=68.44 Aligned_cols=158 Identities=14% Similarity=0.188 Sum_probs=99.2
Q ss_pred eEEeecccc--CeeEEEecCCEEEEEeCCCcEEEEecCCce-eEEEecC-CCceeEEEEecCCCEEEEE------cCCeE
Q 022324 105 IDQWKAHSV--GVDQCRMKRGLILTGVGDKVMRLWSLEGYK-CVEEYSL-PNAASLVDFDFDESKIVGL------IGTRI 174 (299)
Q Consensus 105 ~~~~~~h~~--~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~------~d~~i 174 (299)
.+++..|++ +-..+..+++-++++..||.+.+++.+... ....+.. +......+....++.+.+. .-+..
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 344444443 334455577789999999999999876511 1111111 1111112222333333322 23456
Q ss_pred EEEecCCceeeeec-cCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcce-eeeccccCCceeEEEeCCC--CeEEE
Q 022324 175 CIWRRNGLRSVFPS-REGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED--QLIIS 249 (299)
Q Consensus 175 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~--~~l~~ 249 (299)
+.|+++........ ........+|.+|..+. +++|++||.+.+||.++... ...+..|+.+|+.+-|+|. ..|++
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft 241 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT 241 (319)
T ss_pred eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE
Confidence 67776654322111 11111334577777666 77889999999999998643 4556689999999999986 78999
Q ss_pred EeCCCcEEEEeCC
Q 022324 250 GSSLGSIAISGLS 262 (299)
Q Consensus 250 ~~~dg~i~iwd~~ 262 (299)
+++||.+..||..
T Consensus 242 ~sedGslw~wdas 254 (319)
T KOG4714|consen 242 CSEDGSLWHWDAS 254 (319)
T ss_pred ecCCCcEEEEcCC
Confidence 9999999999986
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.60 E-value=4.6e-06 Score=71.15 Aligned_cols=148 Identities=14% Similarity=0.057 Sum_probs=100.0
Q ss_pred CCEEEEEeCCCcEEEEecCCceeEEEecCCCc-----------eeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeec
Q 022324 122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----------ASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188 (299)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~ 188 (299)
++.++.+..+|.+..+|..+|+.+........ ... ..+ .+..++ ++.+|.++.+|..+++.....
T Consensus 190 ~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 190 DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 45678888899999999999987765442110 000 111 234555 888999999999888655443
Q ss_pred cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc-CCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceE
Q 022324 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-CAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRV 267 (299)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 267 (299)
..... ......+..++.++.+|.+..+|..+++.+...... .....+... .+..+++++.+|.|+++|..+|+.+
T Consensus 268 ~~~~~---~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 268 DASSY---QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred ccCCc---cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 32211 122345677888899999999999999887665321 111222222 1357888999999999999999999
Q ss_pred EEeeccCC
Q 022324 268 ATLRSTDC 275 (299)
Q Consensus 268 ~~~~~~~~ 275 (299)
.+++.+..
T Consensus 344 ~~~~~~~~ 351 (377)
T TIGR03300 344 ARLKTDGS 351 (377)
T ss_pred EEEEcCCC
Confidence 88876553
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.58 E-value=4.8e-06 Score=64.34 Aligned_cols=166 Identities=8% Similarity=-0.079 Sum_probs=108.0
Q ss_pred CCEEEEEeCCCcEEEEecCCceeE-EEecCCCceeE----EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCc-cce
Q 022324 122 RGLILTGVGDKVMRLWSLEGYKCV-EEYSLPNAASL----VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMK 195 (299)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~----~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~ 195 (299)
+++|+.|+..|...+|...+.+.. +....+...+. .+- .....++++.|.++++.++......+..|... ...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd-~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCD-LKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcc-cccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 348999999999999999866533 22222222111 111 12234458999999999887665333333321 122
Q ss_pred eeeeccCCCeEEEecCCCcEEEEEcCCc-ceeee--ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce-EEE-
Q 022324 196 GLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQI--IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR-VAT- 269 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~--~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~- 269 (299)
..++++++..+++.++...|-.|.++.. +.+.. .....+.-.+..|+.. ..+|++..||++.|||++.... ..+
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 3578888888999999999999988753 22222 2233444567778876 8899999999999999987432 222
Q ss_pred --eeccCCCCcEEEEEccCCCC
Q 022324 270 --LRSTDCTGHIICLMYPQFLH 289 (299)
Q Consensus 270 --~~~~~~~~~i~~~~~s~~g~ 289 (299)
-+.++.+ .++.+.|++.|.
T Consensus 243 sstrp~hnG-a~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 243 SSTRPHHNG-AFRVCRFSLYGL 263 (344)
T ss_pred cccCCCCCC-ceEEEEecCCCc
Confidence 2233333 899999998653
No 274
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=4.9e-08 Score=86.55 Aligned_cols=181 Identities=10% Similarity=0.028 Sum_probs=121.2
Q ss_pred eEEeeccccCeeEEEecC--CEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE--EEcC-CeEEEEe
Q 022324 105 IDQWKAHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV--GLIG-TRICIWR 178 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~--~~~d-~~i~v~d 178 (299)
.++++.|+..-+|++|.. +.|+.|+..|.|+++++.+|.....+.+|...+. +.-+.+|..++ ++.. .-..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 567789999999999943 3999999999999999999999999999987776 88899998876 3333 3567898
Q ss_pred cCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc----ccCCceeEEEeCCC-CeEEEEeCC
Q 022324 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR----MHCAPVTSLSLSED-QLIISGSSL 253 (299)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~-~~l~~~~~d 253 (299)
............. ...+.|+.....-+.|.......+||++++..+.++- +....-+...|+|. .+++- |
T Consensus 1174 ~~s~~~~~Hsf~e--d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---d 1248 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE--DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---D 1248 (1516)
T ss_pred cccccCccccccc--cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---C
Confidence 8653211111111 1122343333334556666778999999998877642 22233377889998 55543 4
Q ss_pred CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 254 GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 254 g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
| .+||++..+.++.|..-.. .+ .=.|+|.|..++..|
T Consensus 1249 G--vLWDvR~~~aIh~FD~ft~--~~-~G~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEAIHRFDQFTD--YG-GGGFHPSGNEVIINS 1285 (1516)
T ss_pred c--eeeeeccHHHHhhhhhhee--cc-cccccCCCceEEeec
Confidence 4 3799988776666643332 11 124777777666544
No 275
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.56 E-value=3.6e-05 Score=61.15 Aligned_cols=168 Identities=14% Similarity=0.060 Sum_probs=107.7
Q ss_pred cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeec-cCC----ccce
Q 022324 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS-REG----TFMK 195 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~-~~~----~~~~ 195 (299)
.++.+++++.++.|..||..+|+.+..+.........-...++..++++.++.++.+|..+++..... ... ....
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 114 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS 114 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence 56688888999999999999999998888654433322334455555888899999999888755542 111 1111
Q ss_pred eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCc-----------eeEEEeCCCCeEEEEeCCCc-EEEEeCCC
Q 022324 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP-----------VTSLSLSEDQLIISGSSLGS-IAISGLSS 263 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~~~~~~l~~~~~dg~-i~iwd~~~ 263 (299)
.......+..++.+..++.|..+|+++|+.+......... ...+.+..+ .+..++.++. +.+ |+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~t 192 (238)
T PF13360_consen 115 SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLAT 192 (238)
T ss_dssp -SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTT
T ss_pred ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCC
Confidence 2234444777888888999999999999998777543321 123333333 6666777775 555 9999
Q ss_pred CceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 264 DQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 264 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
++.+.... .. .+..+ ...++..|+.++
T Consensus 193 g~~~w~~~--~~--~~~~~-~~~~~~~l~~~~ 219 (238)
T PF13360_consen 193 GEKLWSKP--IS--GIYSL-PSVDGGTLYVTS 219 (238)
T ss_dssp TEEEEEEC--SS---ECEC-EECCCTEEEEEE
T ss_pred CCEEEEec--CC--CccCC-ceeeCCEEEEEe
Confidence 98664333 22 33331 234556665554
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.54 E-value=3.9e-06 Score=66.98 Aligned_cols=188 Identities=13% Similarity=0.202 Sum_probs=117.1
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEec-CCceeEEEec--CCCceeEEEEecCCCEEE-EEcCCeEEEEe
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSL-EGYKCVEEYS--LPNAASLVDFDFDESKIV-GLIGTRICIWR 178 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d 178 (299)
.+.++||.+.|++... +.+ -+++.+.|.++++|-- +.++.-..+. -+.++..+.+.++...|+ +-..|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 3455899999998765 544 8999999999999953 3454433333 345666688888888888 88889888886
Q ss_pred cCCce------eeeeccCCccceeeeeccCCCe---------------------------------------EEEecCCC
Q 022324 179 RNGLR------SVFPSREGTFMKGLCMRYFDPE---------------------------------------AVVGCEDG 213 (299)
Q Consensus 179 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------------------------------------l~s~~~d~ 213 (299)
+...- .....|...+.. +-++-.... ...|...|
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~-~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~g 175 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSA-IVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSG 175 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceee-EEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccccc
Confidence 64310 111111111110 001111111 12333344
Q ss_pred cEEEEEcC--CcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccCCCC
Q 022324 214 TARVFDMY--SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQFLH 289 (299)
Q Consensus 214 ~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~g~ 289 (299)
.|.+-.+. .-..+..+.+|.+.+.+++|.+. ..|.+|..|..+.+||+.-++ ....+.+|.+ .|+.+...+--+
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~--kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND--KVQALSYAQHTR 253 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh--hhhhhhhhhhhe
Confidence 44433322 23356667789999999999998 899999999999999996443 3445556665 566665555555
Q ss_pred eEEeee
Q 022324 290 MLFFLC 295 (299)
Q Consensus 290 ~l~s~s 295 (299)
.|++++
T Consensus 254 ~l~S~~ 259 (404)
T KOG1409|consen 254 QLISCG 259 (404)
T ss_pred eeeecc
Confidence 555543
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=2.8e-06 Score=74.89 Aligned_cols=171 Identities=10% Similarity=0.062 Sum_probs=114.9
Q ss_pred cccCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeecc
Q 022324 111 HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR 189 (299)
Q Consensus 111 h~~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~ 189 (299)
..+.++|+++.+..|+-|+.+|.|++.+.+. .. .+.-.|... ..+|.+++ |+.||+|.|..+-+.+......
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d 110 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD 110 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCC-cc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEe
Confidence 3456778888888999999999999998763 32 222222222 56788999 9999999998887765333222
Q ss_pred CCccceeeeeccC-----CCeEEEecCCCcEEEEEcCCcc-ee-eeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022324 190 EGTFMKGLCMRYF-----DPEAVVGCEDGTARVFDMYSRK-CS-QIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (299)
Q Consensus 190 ~~~~~~~~~~~~~-----~~~l~s~~~d~~i~iwd~~~~~-~~-~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (299)
-.....+++++|+ ...+++|+..| +.++.-+--. .. .......++|.++.|..+ ++|-++.+| |++||+.
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-lIAWand~G-v~vyd~~ 187 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-LIAWANDDG-VKVYDTP 187 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-EEEEecCCC-cEEEecc
Confidence 2233335677777 34489999888 7777643211 11 134456789999999654 788888777 9999999
Q ss_pred CCceEEEeeccCCC----CcEEEEEccCCCCeE
Q 022324 263 SDQRVATLRSTDCT----GHIICLMYPQFLHML 291 (299)
Q Consensus 263 ~~~~~~~~~~~~~~----~~i~~~~~s~~g~~l 291 (299)
+++.+..++..... .....+.|.++.+.+
T Consensus 188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV 220 (846)
T KOG2066|consen 188 TRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV 220 (846)
T ss_pred ccceeeccCCCCCCCCcccCCCceEecCCCeEE
Confidence 98888777655431 123456776665444
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.48 E-value=3.6e-05 Score=64.31 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=71.8
Q ss_pred CCeEEEecCCC-cEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEE
Q 022324 203 DPEAVVGCEDG-TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHII 280 (299)
Q Consensus 203 ~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~ 280 (299)
+..++.|..|| .+-++|.++++... +...-+.|.++..+++ ++++++.....|-+.|+.+|.....-+...+ -|+
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~--lIt 447 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG--LIT 447 (668)
T ss_pred CcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc--eeE
Confidence 33467888888 89999999776544 4456678999999999 9999999999999999999875444444445 899
Q ss_pred EEEccCCCCeEEee
Q 022324 281 CLMYPQFLHMLFFL 294 (299)
Q Consensus 281 ~~~~s~~g~~l~s~ 294 (299)
.+.|||+++++|-+
T Consensus 448 df~~~~nsr~iAYa 461 (668)
T COG4946 448 DFDWHPNSRWIAYA 461 (668)
T ss_pred EEEEcCCceeEEEe
Confidence 99999999999865
No 279
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.2e-06 Score=72.23 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=133.2
Q ss_pred CceeeEEeeccccCeeEEEe-cCC-EEEEEeC-CCcEEEEecCCceeEEEecCCCceeEEEEec-CC---CEEE--EEcC
Q 022324 101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKCVEEYSLPNAASLVDFDF-DE---SKIV--GLIG 171 (299)
Q Consensus 101 g~~~~~~~~~h~~~i~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~---~~l~--~~~d 171 (299)
|...++.+..|.+.|.+++. .++ ++.|.+. |..++++|+++...+..++...-+-.++|.. .| ..++ ...+
T Consensus 42 GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~s 121 (558)
T KOG0882|consen 42 GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKS 121 (558)
T ss_pred ceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccC
Confidence 33446667889999998877 456 7888777 9999999999877765555443333333322 22 1344 4457
Q ss_pred CeEEEEecCCce---eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC------cce---------eeeccccC
Q 022324 172 TRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS------RKC---------SQIIRMHC 233 (299)
Q Consensus 172 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~---------~~~~~~~~ 233 (299)
+.+.++|-.... ..+..........+.+.+.+..+++....|.|.-|.... .+. +..+....
T Consensus 122 g~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 122 GKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred CCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 899999987543 223322222223456667777788888899999998772 111 11222345
Q ss_pred CceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC-------------------------------CCCcEEE
Q 022324 234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD-------------------------------CTGHIIC 281 (299)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~~~i~~ 281 (299)
....++.|+|+ ..+.+-+.|..|++++.++|++++.+.... +...-+.
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~ 281 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN 281 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence 67899999999 889999999999999999887665442110 0024467
Q ss_pred EEccCCCCeEEeeeccc
Q 022324 282 LMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 282 ~~~s~~g~~l~s~s~~~ 298 (299)
+.|...|++|+-|++.+
T Consensus 282 ~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 282 AVFDESGNFLLYGTILG 298 (558)
T ss_pred eEEcCCCCEEEeeccee
Confidence 78999999999988765
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.46 E-value=0.0004 Score=55.53 Aligned_cols=175 Identities=13% Similarity=0.041 Sum_probs=110.1
Q ss_pred eeEEEe--cCCEEEEEeCCCcEEEEecCCceeEEEecC-----CCc-eeEEEEecCCCEEEEEc-C--------CeEEEE
Q 022324 115 VDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYSL-----PNA-ASLVDFDFDESKIVGLI-G--------TRICIW 177 (299)
Q Consensus 115 i~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~l~~~~-d--------~~i~v~ 177 (299)
...+.+ +++.|+.+..++.. ++|..+++....... ... ...++++++|++.++.. . |.++.+
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~~~-~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~ 120 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGGIA-VVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRI 120 (246)
T ss_dssp EEEEEEECTTSEEEEEETTCEE-EEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEE
T ss_pred CceEEEEccCCEEEEEEcCceE-EEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEE
Confidence 344444 45677777765554 449998865544332 122 22399999999766433 2 567788
Q ss_pred ecCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCCcce-------eeeccccCCceeEEEeCCC-CeEE
Q 022324 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKC-------SQIIRMHCAPVTSLSLSED-QLII 248 (299)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~i~~~~~~~~-~~l~ 248 (299)
+.......... .-.....+++++++..|+ +-+..+.|..+++..... ...+....+..-.+++..+ ++.+
T Consensus 121 ~~~~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 121 DPDGKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp ETTSEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred CCCCeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEE
Confidence 87732222211 122233579999998754 667788899999863221 1222222234788999988 7777
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc-CCCCeEEee
Q 022324 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP-QFLHMLFFL 294 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~s~ 294 (299)
+....+.|.++|.+ |+.+..+..... .+++++|. ++.+.|+..
T Consensus 200 a~~~~~~I~~~~p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 200 ADWGGGRIVVFDPD-GKLLREIELPVP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEETTTEEEEEETT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEEE
T ss_pred EEcCCCEEEEECCC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEEE
Confidence 77789999999987 999998887755 79999994 666655543
No 281
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.9e-05 Score=67.08 Aligned_cols=96 Identities=7% Similarity=0.014 Sum_probs=61.1
Q ss_pred eeeccCCCeEEE--ec-CCCcEEEEEcCC-c---ceeeeccccCCceeEEEeCCC-CeEEEE---eCCCcEEEEeCCCCc
Q 022324 197 LCMRYFDPEAVV--GC-EDGTARVFDMYS-R---KCSQIIRMHCAPVTSLSLSED-QLIISG---SSLGSIAISGLSSDQ 265 (299)
Q Consensus 197 ~~~~~~~~~l~s--~~-~d~~i~iwd~~~-~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~---~~dg~i~iwd~~~~~ 265 (299)
.+|.|.++.+++ |. ...++.+|.+++ . +.+..+. ....+.+.|+|. ++++.+ |..|.+..+|..-..
T Consensus 451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 346666666433 22 234577777663 1 2223332 345788999998 877765 457899999987434
Q ss_pred eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 266 RVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+..+-...+. ..+.+.|+|.|+|+++++.
T Consensus 529 ~k~~~~~eh~--~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 529 LKDTASPEHF--AATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhccCcccc--ccccceECCCCCEEEEeee
Confidence 3333333333 6788999999999999874
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.44 E-value=4.9e-05 Score=72.72 Aligned_cols=149 Identities=11% Similarity=0.090 Sum_probs=100.2
Q ss_pred EEEe-c-CC-EEEEEeCCCcEEEEecCCceeEEEecC----------------CCceeEEEEecCCCEEE--EEcCCeEE
Q 022324 117 QCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSL----------------PNAASLVDFDFDESKIV--GLIGTRIC 175 (299)
Q Consensus 117 ~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~--~~~d~~i~ 175 (299)
.+++ + ++ ++++.+.++.|++||..++.... +.+ -..+..++++|+++.|+ -+.++.|+
T Consensus 687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Ir 765 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIR 765 (1057)
T ss_pred EEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEE
Confidence 4666 4 34 66777788999999988765432 111 01233489999998554 55578999
Q ss_pred EEecCCceeeeec---------------cCC-------ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc---
Q 022324 176 IWRRNGLRSVFPS---------------REG-------TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--- 230 (299)
Q Consensus 176 v~d~~~~~~~~~~---------------~~~-------~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--- 230 (299)
+||+.++...... ..+ .....+++.+++..+++-..++.|++||..++.......
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC
Confidence 9998865321100 000 011245777777777888889999999998766543221
Q ss_pred ----------ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCce
Q 022324 231 ----------MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR 266 (299)
Q Consensus 231 ----------~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 266 (299)
..-.....++++++ +++++-+.++.|++||+.+++.
T Consensus 846 ~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 846 AGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred cCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 11235778999998 8888888999999999988764
No 283
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.43 E-value=0.00011 Score=58.26 Aligned_cols=143 Identities=13% Similarity=0.054 Sum_probs=94.7
Q ss_pred CCCcEEEEecCCceeEEEecCCCceeE-E-EEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeE
Q 022324 130 GDKVMRLWSLEGYKCVEEYSLPNAASL-V-DFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA 206 (299)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (299)
.+|+|..+|..+|+.+........... + ...+++..++ ++.++.++.||..+++............. .....+..+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~v 79 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG-APVVDGGRV 79 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS-GEEEETTEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc-eeeeccccc
Confidence 368999999999999988875321111 2 1333444555 88999999999988875543332211111 123446667
Q ss_pred EEecCCCcEEEEEcCCcceeeec-cccCC-----ceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022324 207 VVGCEDGTARVFDMYSRKCSQII-RMHCA-----PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 207 ~s~~~d~~i~iwd~~~~~~~~~~-~~~~~-----~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
+.+..++.+..+|..+|+.+... ..... ......+. +..++.+..++.|..+|+++|+.+.......
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 77778889999999999998874 32211 11222222 3577888889999999999999988886643
No 284
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.42 E-value=0.00013 Score=69.93 Aligned_cols=179 Identities=10% Similarity=0.024 Sum_probs=109.7
Q ss_pred eEEEe-cC-CEEEEE-eCCCcEEEEecCCceeEEEecC------------------CCceeEEEEecCC-CEEE-EEcCC
Q 022324 116 DQCRM-KR-GLILTG-VGDKVMRLWSLEGYKCVEEYSL------------------PNAASLVDFDFDE-SKIV-GLIGT 172 (299)
Q Consensus 116 ~~~~~-~~-~~l~s~-~~dg~i~iwd~~~~~~~~~~~~------------------~~~~~~~~~~~~~-~~l~-~~~d~ 172 (299)
..+++ ++ +.|+.+ ...+.|+++|..++.. .++.+ -.....++++|++ .+++ .+.++
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 44566 33 344444 4457889899876653 22211 1123458999954 4444 56678
Q ss_pred eEEEEecCCceee-eecc------CC--------ccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeec-------
Q 022324 173 RICIWRRNGLRSV-FPSR------EG--------TFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQII------- 229 (299)
Q Consensus 173 ~i~v~d~~~~~~~-~~~~------~~--------~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~------- 229 (299)
.|++||..++... +... .+ .....+++++++.. +++-..++.|++||+.++......
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~ 785 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS 785 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence 9999998765421 1110 00 11223678888885 456667799999999876532110
Q ss_pred ------cc--------cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC-----------CCCcEEEEE
Q 022324 230 ------RM--------HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD-----------CTGHIICLM 283 (299)
Q Consensus 230 ------~~--------~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~i~~~~ 283 (299)
-. .-.....++++++ .++++-+.++.|++||..++.......... .......++
T Consensus 786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa 865 (1057)
T PLN02919 786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA 865 (1057)
T ss_pred cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE
Confidence 00 0113468899988 888888899999999998776543321100 001578899
Q ss_pred ccCCCCeEEeee
Q 022324 284 YPQFLHMLFFLC 295 (299)
Q Consensus 284 ~s~~g~~l~s~s 295 (299)
++++|+.+++.+
T Consensus 866 vd~dG~lyVaDt 877 (1057)
T PLN02919 866 LGENGRLFVADT 877 (1057)
T ss_pred EeCCCCEEEEEC
Confidence 999999777654
No 285
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=0.00048 Score=55.76 Aligned_cols=186 Identities=9% Similarity=0.036 Sum_probs=115.8
Q ss_pred ccccCeeEEEe-cCC-EEEEEeCC---CcEEEEecCC--ceeE--EEecCCCc-eeEEEEecCCCEEE--EEcCCeEEEE
Q 022324 110 AHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEG--YKCV--EEYSLPNA-ASLVDFDFDESKIV--GLIGTRICIW 177 (299)
Q Consensus 110 ~h~~~i~~~~~-~~~-~l~s~~~d---g~i~iwd~~~--~~~~--~~~~~~~~-~~~~~~~~~~~~l~--~~~d~~i~v~ 177 (299)
...+..+-+.+ +++ .|.++-.+ |.|.-|.++. |+.. ........ ...+++++++++++ ....|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 44555666777 455 67776554 6777776663 5543 22223333 35599999999988 4446899999
Q ss_pred ecCCcee-----eeeccCCc---------cceeeeeccCCCeEEEec-CCCcEEEEEcCCcceeeecc---ccCCceeEE
Q 022324 178 RRNGLRS-----VFPSREGT---------FMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQIIR---MHCAPVTSL 239 (299)
Q Consensus 178 d~~~~~~-----~~~~~~~~---------~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~---~~~~~i~~~ 239 (299)
.++.... -...+.+. -.....+.|+++++++.+ .-.+|.+|++..++....-. ........|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 9865311 11111111 012346788888877654 33479999999776532221 334557899
Q ss_pred EeCCC-CeEEEEeC-CCcEEEEeCCCC-ceEEEeeccC-------CCCcEEEEEccCCCCeEEeee
Q 022324 240 SLSED-QLIISGSS-LGSIAISGLSSD-QRVATLRSTD-------CTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 240 ~~~~~-~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~-------~~~~i~~~~~s~~g~~l~s~s 295 (299)
.|+|+ ++..+.++ +++|.+|..... ..+..++... +......+..+|||++|.++-
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 99999 76555554 999999998763 2233332211 112567888999999998863
No 286
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.38 E-value=1.5e-05 Score=68.00 Aligned_cols=133 Identities=7% Similarity=-0.001 Sum_probs=90.2
Q ss_pred cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeecc--CCccceee
Q 022324 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR--EGTFMKGL 197 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~ 197 (299)
.++.++.++.+|.+..+|.++++.+....... ..... ..+..++ ++.+|.++.+|..+++...... .+....
T Consensus 240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s-- 314 (377)
T TIGR03300 240 DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT-- 314 (377)
T ss_pred ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc--
Confidence 35578888899999999999999877665322 11122 2345555 8889999999998876544331 111111
Q ss_pred eeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee-EEEeCCCCeEEEEeCCCcEEEE
Q 022324 198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-SLSLSEDQLIISGSSLGSIAIS 259 (299)
Q Consensus 198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~~~l~~~~~dg~i~iw 259 (299)
.....+..+++++.+|.+.++|..+++.+..+..+...+. +..+ .++.|+.++.||.|+.+
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~-~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVV-VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEE-ECCEEEEEeCCceEEEe
Confidence 1122466788999999999999999999988875554332 2222 23468888899988765
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.37 E-value=0.00038 Score=54.65 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=102.2
Q ss_pred cCCEEEEEeCCCcEEEEecCCc--eeEEEec---CCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce-eeeecc---
Q 022324 121 KRGLILTGVGDKVMRLWSLEGY--KCVEEYS---LPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSR--- 189 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~--- 189 (299)
++|.++..-.|..|.|-..++. ..+.+.+ .+.+... ++|+||+..|+ +...|+|++||+.+.. ..+...
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~ 86 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF 86 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence 4556666666777776655432 2223333 3344455 99999999999 9999999999998643 111110
Q ss_pred CCcc-c--eeeeeccC------CCeEEEecCCCcEEEEEcCCc-----ceeeecc---ccCCceeEEEeCCC-CeEEEEe
Q 022324 190 EGTF-M--KGLCMRYF------DPEAVVGCEDGTARVFDMYSR-----KCSQIIR---MHCAPVTSLSLSED-QLIISGS 251 (299)
Q Consensus 190 ~~~~-~--~~~~~~~~------~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~---~~~~~i~~~~~~~~-~~l~~~~ 251 (299)
.+.. . ..+.+... ...|++-...|.++-|-+..+ +....+. .+...|.++.++|. ++|++|+
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 1111 1 11112111 123777778888887765322 2223332 24667999999999 8777765
Q ss_pred C-CC----------cEEEEeCCCCceE--------------------EEe--------eccCCCCcEEEEEccCCCCeEE
Q 022324 252 S-LG----------SIAISGLSSDQRV--------------------ATL--------RSTDCTGHIICLMYPQFLHMLF 292 (299)
Q Consensus 252 ~-dg----------~i~iwd~~~~~~~--------------------~~~--------~~~~~~~~i~~~~~s~~g~~l~ 292 (299)
. .. -+.-|.+-++.+- ..+ +.... ..|..|..||||+.||
T Consensus 167 ~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~-d~i~kmSlSPdg~~La 245 (282)
T PF15492_consen 167 CEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ-DGIFKMSLSPDGSLLA 245 (282)
T ss_pred cCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC-CceEEEEECCCCCEEE
Confidence 4 11 2555654322110 000 11111 2799999999999999
Q ss_pred eeeccc
Q 022324 293 FLCFLP 298 (299)
Q Consensus 293 s~s~~~ 298 (299)
+..+-|
T Consensus 246 ~ih~sG 251 (282)
T PF15492_consen 246 CIHFSG 251 (282)
T ss_pred EEEcCC
Confidence 876543
No 288
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.36 E-value=1.5e-05 Score=71.53 Aligned_cols=147 Identities=12% Similarity=0.151 Sum_probs=104.6
Q ss_pred CeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc---------CCeEEEEecCCce
Q 022324 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---------GTRICIWRRNGLR 183 (299)
Q Consensus 114 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---------d~~i~v~d~~~~~ 183 (299)
.|.-+...+.++.+|...|+|.+-|..+.+.++++..|...++ +|+-.|+.|+ ++. |.-|+|||++..+
T Consensus 179 ~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS-DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 179 GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS-DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred ceEEEEecCcEEEeecccceEEeecCCcCceeeeeecccccee-eeeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 3555555666999999999999999999999999999976554 5666788887 444 4468999999775
Q ss_pred eeeeccCCccceeeeeccCCC-eEEEecCCCcEEEEEcCC---c-ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEE
Q 022324 184 SVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYS---R-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (299)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~---~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (299)
.+....-......+.+.|.-. .+++++..|...+-|..+ . .-+..+......+..+.++++ +.++.|..+|.|.
T Consensus 258 al~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~ 337 (1118)
T KOG1275|consen 258 ALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVN 337 (1118)
T ss_pred ccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEe
Confidence 433222111112345555533 388889999999988432 2 112223344455999999998 9999999999999
Q ss_pred EEeC
Q 022324 258 ISGL 261 (299)
Q Consensus 258 iwd~ 261 (299)
+|.-
T Consensus 338 ~wa~ 341 (1118)
T KOG1275|consen 338 LWAD 341 (1118)
T ss_pred eecC
Confidence 9973
No 289
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.35 E-value=1.2e-05 Score=72.00 Aligned_cols=167 Identities=11% Similarity=0.080 Sum_probs=121.0
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeec
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMR 200 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~ 200 (299)
.++.|+....+..+|+.+.+..+......+.+. -+..+++.+. |...|+|.+-|.++.+ ..+..|.+. +.++.
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~-imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s---iSDfD 224 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVT-IMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS---ISDFD 224 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceE-EEEecCcEEEeecccceEEeecCCcCceeeeeeccccc---eeeee
Confidence 677888888888889999888877765543332 2234567777 9999999999998775 556666665 44788
Q ss_pred cCCCeEEEecC---------CCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCC-Cce-E
Q 022324 201 YFDPEAVVGCE---------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSS-DQR-V 267 (299)
Q Consensus 201 ~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~-~~~-~ 267 (299)
-.++.|++++. |..|++||++.-+.+..+.-+.++ .-+.|.|. ..+++++..|...+-|..+ +.+ .
T Consensus 225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 88888888875 445899999988877766554443 66788898 7899999999999999332 121 2
Q ss_pred EEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 268 ATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
.....+..+..+..+.+|++|+.|+.|-
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~alafgd 331 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDALAFGD 331 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCceEEEec
Confidence 2333333222699999999999998764
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.35 E-value=4.7e-06 Score=72.78 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=109.3
Q ss_pred cccCeeEEEec--CCEEEEEeCCCcEEEEecCCce---------------eEEEecCCCceeE-EEEecCCCEEE-EEcC
Q 022324 111 HSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYK---------------CVEEYSLPNAASL-VDFDFDESKIV-GLIG 171 (299)
Q Consensus 111 h~~~i~~~~~~--~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d 171 (299)
.+....|+.|. .++++.|+.||.+++-.+.+.. .-+++++|+..+. +.|+.+.+.+- ...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34567889994 4499999999999999876431 2345667876665 89998888888 8889
Q ss_pred CeEEEEecCCce---eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeE
Q 022324 172 TRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI 247 (299)
Q Consensus 172 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l 247 (299)
|-|.+|-+-.+. .........+...++|+.++..++....||.|.+=.++ |..+.--.-.......+.|++| +.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd-GNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD-GNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec-cceecchhcchheccceeecccHHHH
Confidence 999999987664 23333333444467899999999888999988776665 3333211111223457889999 888
Q ss_pred EEEeCCCcEEEEeCC
Q 022324 248 ISGSSLGSIAISGLS 262 (299)
Q Consensus 248 ~~~~~dg~i~iwd~~ 262 (299)
+.+-.+|.+.++|.+
T Consensus 172 Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQ 186 (1189)
T ss_pred HhhhcCCcEEEeccc
Confidence 888889999999975
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.33 E-value=2.6e-06 Score=67.19 Aligned_cols=186 Identities=13% Similarity=0.171 Sum_probs=110.7
Q ss_pred cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCce-----eEEEecCCCc-------------eeEEEEecCCC---EEE
Q 022324 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-----CVEEYSLPNA-------------ASLVDFDFDES---KIV 167 (299)
Q Consensus 111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~-------------~~~~~~~~~~~---~l~ 167 (299)
..+.|+++.| ..+ ||++|...|.|.+|.-+... ....++.|+. +..+.|..++. +|+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3457889999 344 99999999999999865432 1223444332 23355544332 244
Q ss_pred EEcCCeEEEEecCCce-------------------------ee-eec---c-------------CCcccee--eeeccCC
Q 022324 168 GLIGTRICIWRRNGLR-------------------------SV-FPS---R-------------EGTFMKG--LCMRYFD 203 (299)
Q Consensus 168 ~~~d~~i~v~d~~~~~-------------------------~~-~~~---~-------------~~~~~~~--~~~~~~~ 203 (299)
.+.|.+|++|.+.... .. ... | ..+...+ +.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 9999999999875421 00 000 0 0011111 2233333
Q ss_pred CeEEEecCCCcEEEEEcCCcc---eeeecccc-----CCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCce------E
Q 022324 204 PEAVVGCEDGTARVFDMYSRK---CSQIIRMH-----CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR------V 267 (299)
Q Consensus 204 ~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~-----~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~------~ 267 (299)
..+++ .+|=.|.+|++.-.. .+..++.| ...|++..|+|. ..+.-.++.|.|++-|+++..+ +
T Consensus 185 et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 33444 456789999876321 12233333 356899999997 7788888899999999985321 1
Q ss_pred EEe--eccCC------CCcEEEEEccCCCCeEEeeecc
Q 022324 268 ATL--RSTDC------TGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 268 ~~~--~~~~~------~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
... .+... ...|..+.|+++|+|+++-++.
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl 301 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL 301 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc
Confidence 111 11000 0268889999999999987654
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.00017 Score=62.21 Aligned_cols=156 Identities=10% Similarity=0.026 Sum_probs=92.7
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCE-EE-EEcC---CeEEEEecCCcee-eeeccCCccceeeeeccCCCe
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK-IV-GLIG---TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPE 205 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~d---~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 205 (299)
..|.+-|.... ..+.+..........|+|+++. ++ .+.+ ..|+++|+.+++. .+....+. .....|+|++..
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCCCC-ceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCE
Confidence 35555555433 2333333334556999999985 55 4443 4799999987752 23333332 224579999988
Q ss_pred EE-EecC--CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe-CCC--cEEEEeCCCCceEEEeeccCCCCc
Q 022324 206 AV-VGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLG--SIAISGLSSDQRVATLRSTDCTGH 278 (299)
Q Consensus 206 l~-s~~~--d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 278 (299)
++ +.+. +..|.++|+..++.. .+..+........|+|| +.|+..+ ..+ .|.+.|+.+++..+... ... .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~--~ 322 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGK--N 322 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCC--c
Confidence 54 3333 356888898877643 34333333345679999 6555554 333 58888888776533222 111 1
Q ss_pred EEEEEccCCCCeEEeee
Q 022324 279 IICLMYPQFLHMLFFLC 295 (299)
Q Consensus 279 i~~~~~s~~g~~l~s~s 295 (299)
...|+|||++|+..+
T Consensus 323 --~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 323 --NSSVSTYKNYIVYSS 337 (419)
T ss_pred --CceECCCCCEEEEEE
Confidence 248999999988665
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.32 E-value=0.00014 Score=68.43 Aligned_cols=182 Identities=11% Similarity=-0.019 Sum_probs=117.8
Q ss_pred cccCeeEEEe-cCC-EEEEEeCCCcEEEE----ecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCC--
Q 022324 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLW----SLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNG-- 181 (299)
Q Consensus 111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~-- 181 (299)
..+.|.++.+ ++. .++.+..+|.|.+. +..+.+....-....++.+++|+||+..++ ++.++++.+....=
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 3457778877 555 88899999999999 555544333333456778899999999999 88888887754210
Q ss_pred ---------------------c--eeeeeccC------------------C-----ccceeeeeccCCCeEEEecC---C
Q 022324 182 ---------------------L--RSVFPSRE------------------G-----TFMKGLCMRYFDPEAVVGCE---D 212 (299)
Q Consensus 182 ---------------------~--~~~~~~~~------------------~-----~~~~~~~~~~~~~~l~s~~~---d 212 (299)
+ +..|.+.. + .....++|.-++.++++.+- .
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence 0 00010000 0 01224678889999776553 2
Q ss_pred ---CcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC---CCcEEEEeCCCCceEEEeeccC--CCCcEEEEE
Q 022324 213 ---GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRSTD--CTGHIICLM 283 (299)
Q Consensus 213 ---~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~--~~~~i~~~~ 283 (299)
..+++|+.+ |.....-..-.+--.+++|.|. +++|+... ...|.+|.. +|..-..|.-.. ....|..++
T Consensus 234 ~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 234 GSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred CceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEE
Confidence 568999966 6655544433444457899999 88888765 345667774 454444443321 112899999
Q ss_pred ccCCCCeEEee
Q 022324 284 YPQFLHMLFFL 294 (299)
Q Consensus 284 ~s~~g~~l~s~ 294 (299)
|++|+..||.-
T Consensus 312 Wn~ds~iLAv~ 322 (928)
T PF04762_consen 312 WNSDSEILAVW 322 (928)
T ss_pred ECCCCCEEEEE
Confidence 99999999873
No 294
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.32 E-value=0.00037 Score=57.98 Aligned_cols=97 Identities=8% Similarity=-0.068 Sum_probs=73.3
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EE---------cCCeEEEEecCCceeeeeccC--------Cc
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GL---------IGTRICIWRRNGLRSVFPSRE--------GT 192 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~---------~d~~i~v~d~~~~~~~~~~~~--------~~ 192 (299)
++|.+.|..+++.+.++........+ ++||++.++ .+ .++.|.+||..+.+.+-+... +.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 89999999999999999865444445 999999887 44 478999999998864433221 22
Q ss_pred cceeeeeccCCCeEEEec-C-CCcEEEEEcCCcceeeec
Q 022324 193 FMKGLCMRYFDPEAVVGC-E-DGTARVFDMYSRKCSQII 229 (299)
Q Consensus 193 ~~~~~~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~ 229 (299)
....+++++++..++... . +..|.+.|+.+++.+.++
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 233578999999987665 3 788999999988766654
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.5e-05 Score=64.99 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=65.9
Q ss_pred EeeccccCeeEEEe-c--CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCC
Q 022324 107 QWKAHSVGVDQCRM-K--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNG 181 (299)
Q Consensus 107 ~~~~h~~~i~~~~~-~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~ 181 (299)
.+.+|...|..++| | .|++..++.+..|+|.|+++...+..+..+..+.+++|+.++...+ |-.+|.|.+||++.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 34677788999988 3 2389999999999999999999999999998888999998887655 77899999999987
Q ss_pred ce
Q 022324 182 LR 183 (299)
Q Consensus 182 ~~ 183 (299)
..
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 64
No 296
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.28 E-value=3.6e-06 Score=64.72 Aligned_cols=191 Identities=10% Similarity=0.118 Sum_probs=109.0
Q ss_pred eeEEeecccc-CeeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEec------------CCCce-eEEEEecCCCEEE-
Q 022324 104 DIDQWKAHSV-GVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYS------------LPNAA-SLVDFDFDESKIV- 167 (299)
Q Consensus 104 ~~~~~~~h~~-~i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~------------~~~~~-~~~~~~~~~~~l~- 167 (299)
.+-...+|.+ .|..+.+..+ .|+++-.++.+......++.+....+ .+.++ ..-+.+-.++.++
T Consensus 27 ~vD~i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~ 106 (319)
T KOG4714|consen 27 LVDEIMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCI 106 (319)
T ss_pred chhhcccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEe
Confidence 3333344444 2455556444 78888888887777665544433222 11111 1111222334455
Q ss_pred EEcCCeEEEEecCCceeeee----ccCCccceeeeeccCCCeEEEec-----CCCcEEEEEcCCcceeeeccccCCceeE
Q 022324 168 GLIGTRICIWRRNGLRSVFP----SREGTFMKGLCMRYFDPEAVVGC-----EDGTARVFDMYSRKCSQIIRMHCAPVTS 238 (299)
Q Consensus 168 ~~~d~~i~v~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~i~~ 238 (299)
+..||.+.+++.+....... .+.+.. ..+....+..+.++. .-+..+.|+++..+.+..-......|++
T Consensus 107 ~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a--s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKDLALMSRIPSIHSGSA--SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred cCCCceEEEEechHHHhhhhhccccccccc--ccceeecccEEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 89999999999876321111 111111 112222233333322 1234556666644333222222344899
Q ss_pred EEeCCC--CeEEEEeCCCcEEEEeCCCCc-eEEEeeccCCCCcEEEEEccC-CCCeEEeeeccc
Q 022324 239 LSLSED--QLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGHIICLMYPQ-FLHMLFFLCFLP 298 (299)
Q Consensus 239 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~i~~~~~s~-~g~~l~s~s~~~ 298 (299)
++-+|. +.+++|+.||.+-+||.++.. +...++.|.. +|+.+-|+| ++..|++++.-+
T Consensus 185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~--~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 185 LCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKA--EIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred hhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhh--hhhheeccCCCchheeEecCCC
Confidence 999987 688889999999999999864 3455667777 999999999 677888887543
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.28 E-value=1.1e-05 Score=65.73 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=65.6
Q ss_pred eCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCceee---eeccCCccceeeeeccCC
Q 022324 129 VGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSV---FPSREGTFMKGLCMRYFD 203 (299)
Q Consensus 129 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~ 203 (299)
+....+.+|....+.+...+ +|-..+. ++++||+++|+ +..|..|++-.....-.+ .-+|..-+. .+++.+ +
T Consensus 129 gD~~~~di~s~~~~~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS-~isl~~-~ 205 (390)
T KOG3914|consen 129 GDVYSFDILSADSGRCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS-TISLTD-N 205 (390)
T ss_pred CCceeeeeecccccCcchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee-eeeecc-C
Confidence 44455666665554443333 4544444 99999999999 999999999877654322 223333322 233332 2
Q ss_pred CeEEEecCCCcEEEEEcCCcceeeecc
Q 022324 204 PEAVVGCEDGTARVFDMYSRKCSQIIR 230 (299)
Q Consensus 204 ~~l~s~~~d~~i~iwd~~~~~~~~~~~ 230 (299)
..|++++.|+++++||+.+|+.+.++.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ceeeecCCCCcEEEEecccCCcccccc
Confidence 238999999999999999999887664
No 298
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=0.00011 Score=63.27 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=83.3
Q ss_pred cEEEEecCCc--eeEEEecCCCceeEEEEecCCCE-EE-----EEcCC----eEEEEecCCce----eeeeccCCcccee
Q 022324 133 VMRLWSLEGY--KCVEEYSLPNAASLVDFDFDESK-IV-----GLIGT----RICIWRRNGLR----SVFPSREGTFMKG 196 (299)
Q Consensus 133 ~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~-l~-----~~~d~----~i~v~d~~~~~----~~~~~~~~~~~~~ 196 (299)
.+.++.+..+ +.+..++....++.+.|+....+ +. .+.+| .-.+|++...+ .+....-.....+
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 3444444332 33444555556677777764333 22 23344 34567766543 1112222222335
Q ss_pred eeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC
Q 022324 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 197 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 263 (299)
.+.++....++.|..||.|.+||...+..... ...-.++.++|+|+ .++++|+..|.+.+||+.-
T Consensus 265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 265 CARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 68888899999999999999999986643322 33456889999999 8999999999999999864
No 299
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=0.0014 Score=53.22 Aligned_cols=181 Identities=12% Similarity=0.066 Sum_probs=113.4
Q ss_pred eEEEe-cCC-EEEEEeC-CCcEEEEecCC-cee---EEEecCCCc----------eeEEEEecCCCEEEEE--cCCeEEE
Q 022324 116 DQCRM-KRG-LILTGVG-DKVMRLWSLEG-YKC---VEEYSLPNA----------ASLVDFDFDESKIVGL--IGTRICI 176 (299)
Q Consensus 116 ~~~~~-~~~-~l~s~~~-dg~i~iwd~~~-~~~---~~~~~~~~~----------~~~~~~~~~~~~l~~~--~d~~i~v 176 (299)
+.+++ +++ +++++.. -|.|.++-++. |.. +..+.+... +-...+.|++++|++. .-..|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 45666 455 7777765 47899998864 432 223332211 3347889999998833 3458999
Q ss_pred EecCCcee----eeeccCCccceeeeeccCCCeEEEec-CCCcEEEEEcCCc--c--eeeecc------ccCCceeEEEe
Q 022324 177 WRRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSR--K--CSQIIR------MHCAPVTSLSL 241 (299)
Q Consensus 177 ~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~--~--~~~~~~------~~~~~i~~~~~ 241 (299)
|++..+.. ......+....-+.|+|+++..+... -+++|.+|..... + .++.+. ........|.+
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 99986541 12223344444578999999955544 4889999988763 2 222222 22345678888
Q ss_pred CCC-CeEEEEeC-CCcEEEEeCCCC-ceEEEeec-cCCCCcEEEEEccCCCCeEEeeec
Q 022324 242 SED-QLIISGSS-LGSIAISGLSSD-QRVATLRS-TDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 242 ~~~-~~l~~~~~-dg~i~iwd~~~~-~~~~~~~~-~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+++ ++|.++.. ..+|.+|.+... ..+..+.. ..+....+...|+|+|++|+++..
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 999 77766653 457888877542 22332221 112115789999999999998764
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00012 Score=64.89 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=95.8
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecC-----CCEEE-EEcCCeEEEEecC---Cce-eeeeccCCcc
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD-----ESKIV-GLIGTRICIWRRN---GLR-SVFPSREGTF 193 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~-~~~d~~i~v~d~~---~~~-~~~~~~~~~~ 193 (299)
+++||+.||.|.|-.+-+.+...++..+.+..+++++|+ .+.++ |+.-| +.++.-+ +.. .......|.
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~- 162 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP- 162 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc-
Confidence 999999999999999999999988988888889999997 23455 66666 7776543 111 223333333
Q ss_pred ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCC------ceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022324 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA------PVTSLSLSEDQLIISGSSLGSIAISGLS 262 (299)
Q Consensus 194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~i~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (299)
+.++...+..++-++++| |++||..+++.+..+..... ....+.|.++..|+.|-.| +|+|..++
T Consensus 163 --I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 163 --IHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred --eEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 567777788888887665 89999998887766653222 2355777777667776654 58888887
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.23 E-value=5.9e-06 Score=72.39 Aligned_cols=116 Identities=17% Similarity=0.261 Sum_probs=80.4
Q ss_pred EEeeccccCeeEEEe-cC--CEEEEEeCCCcEEEEecCCce-eEEEec-CCCceeEEEEecCC-CEEEEEcCCeEEEEec
Q 022324 106 DQWKAHSVGVDQCRM-KR--GLILTGVGDKVMRLWSLEGYK-CVEEYS-LPNAASLVDFDFDE-SKIVGLIGTRICIWRR 179 (299)
Q Consensus 106 ~~~~~h~~~i~~~~~-~~--~~l~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~l~~~~d~~i~v~d~ 179 (299)
..+.+|...|+.+.| +. ..+++++.|-.+..||+.+.. ++..+. .+.....+.|+-.. ..++.+....|.+||.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 456899999999999 32 299999999999999998754 344333 45555668887644 4455777889999999
Q ss_pred CCceeeeeccCCccceeeeeccC---CCeEEEecCCCcEEEEEcC
Q 022324 180 NGLRSVFPSREGTFMKGLCMRYF---DPEAVVGCEDGTARVFDMY 221 (299)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~~~d~~i~iwd~~ 221 (299)
+.+...+....+++..+-.+.++ ...+.+.+.|++|+.||..
T Consensus 188 r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 188 RKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred cCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 97754443333444433333333 2237788888888888864
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.21 E-value=5e-06 Score=66.48 Aligned_cols=119 Identities=9% Similarity=0.093 Sum_probs=84.8
Q ss_pred ccCeeEEEe--cCCEEEEEeCCCcEEEEecCCc-----eeEEEecCCCceeEEEEec-CCCEEE-EEcCCeEEEEecCCc
Q 022324 112 SVGVDQCRM--KRGLILTGVGDKVMRLWSLEGY-----KCVEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRRNGL 182 (299)
Q Consensus 112 ~~~i~~~~~--~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~d~~i~v~d~~~~ 182 (299)
.+.|.++.| .+++++.|..+|.|...|++.. .+...+.++..+.++..-. ++..|. .+.+|+|++||.+--
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 455666667 3559999999999999999853 4666666666666655433 555655 888999999999854
Q ss_pred e-----eeeeccCCccce-eeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022324 183 R-----SVFPSREGTFMK-GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR 230 (299)
Q Consensus 183 ~-----~~~~~~~~~~~~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 230 (299)
+ ..+++|-+.... -..+.+....++++++|...+||.++.+..+.++.
T Consensus 332 K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 332 KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 3 233444332221 13455556668999999999999999999988875
No 303
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.21 E-value=8.9e-06 Score=71.31 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=111.5
Q ss_pred EEEEEeCCCcEEEEecCCc---eeEEEecCCCceeE-EEEecCCCE-EE-EEcCCeEEEEecCCceeeeeccCC--ccce
Q 022324 124 LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASL-VDFDFDESK-IV-GLIGTRICIWRRNGLRSVFPSREG--TFMK 195 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~-~~~~~~~~~-l~-~~~d~~i~v~d~~~~~~~~~~~~~--~~~~ 195 (299)
+-+.......-.+|++... .....+.+|...+. +.|+|+..- ++ ++.|-.+..||++.+...+..... ....
T Consensus 83 ~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~as 162 (1081)
T KOG0309|consen 83 YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAAS 162 (1081)
T ss_pred eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCc
Confidence 3333333344457886532 22234446665555 999887765 45 889999999999988644332211 1122
Q ss_pred eeeeccCCCeEEEecCCCcEEEEEcCCcc-eeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeec
Q 022324 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRS 272 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 272 (299)
.+.|++..+.+.+.+..+.|.+||.+.|. ++..+++|...|+.++|..- ..+.+++.|++|+.||............
T Consensus 163 qVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 163 QVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred eeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence 46899999998888888899999998764 56778888899999999865 6789999999999999875432222211
Q ss_pred cCCCCcEEEEEccCCCC
Q 022324 273 TDCTGHIICLMYPQFLH 289 (299)
Q Consensus 273 ~~~~~~i~~~~~s~~g~ 289 (299)
.... +|+.-.+.|-|+
T Consensus 243 tt~~-piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 243 TTNF-PIWRGRYLPFGE 258 (1081)
T ss_pred cccC-cceeccccccCc
Confidence 2222 677777777554
No 304
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.4e-05 Score=66.08 Aligned_cols=184 Identities=10% Similarity=0.018 Sum_probs=119.4
Q ss_pred ccccCeeEEEe-cCCEEEEEeCCCcEEEEecCC--c-eeEEEecCCCceeE-EEEecCCCEEE-EEc-CCeEEEEecCCc
Q 022324 110 AHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEG--Y-KCVEEYSLPNAASL-VDFDFDESKIV-GLI-GTRICIWRRNGL 182 (299)
Q Consensus 110 ~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~-d~~i~v~d~~~~ 182 (299)
-|.+.|+.+.. ..+++++++.||.++.|.-.. + +.+..+..|..++. ++.+-++.++. .+. |+.++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 48888888776 445999999999999997543 2 23344556655555 77788887777 455 899999999875
Q ss_pred eeeeeccCCccceeeeeccCCC----eE-EEecCCCcEEEEEcCCcc--eeeeccccCCceeEEEeCCC-CeEEEEeCCC
Q 022324 183 RSVFPSREGTFMKGLCMRYFDP----EA-VVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (299)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~----~l-~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (299)
..+-...........+|..... .+ ++.-.++.+.++|-.... ....-.-|..+|..+.+.+- ..+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 4221110001111123333322 13 344568899999977543 22333378999999999988 8888888899
Q ss_pred cEEEEeCCC------CceEEEeeccCC-------CCcEEEEEccCCCCeEEe
Q 022324 255 SIAISGLSS------DQRVATLRSTDC-------TGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 255 ~i~iwd~~~------~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~s 293 (299)
-|.-|.... .+....++.... .+...++.|+|+|..+.+
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist 218 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST 218 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc
Confidence 999999862 222222221111 126789999999987764
No 305
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.14 E-value=0.00031 Score=61.93 Aligned_cols=168 Identities=11% Similarity=-0.069 Sum_probs=108.0
Q ss_pred eCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EE--------------------------------------
Q 022324 129 VGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-------------------------------------- 169 (299)
Q Consensus 129 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-------------------------------------- 169 (299)
-..+.+.+.|.++.+...++......-.+++++++++++ .+
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 344566777777777666666555444577777777766 32
Q ss_pred --cCCeEEEEecCC-----ceeeeeccCCccceeeeeccCCCeEE-EecCCCcEEEEEcCCcce------------eeec
Q 022324 170 --IGTRICIWRRNG-----LRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKC------------SQII 229 (299)
Q Consensus 170 --~d~~i~v~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~------------~~~~ 229 (299)
.++.|.+.|..+ ...+.....+.....+.++|++.+++ ++..+..+.++|+.+.+. +.+.
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 124577777776 33444444455555678999999955 555699999999987542 3333
Q ss_pred cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC----------CceEEEeeccCCCCcEEE---EEccCCCCeEEeee
Q 022324 230 RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS----------DQRVATLRSTDCTGHIIC---LMYPQFLHMLFFLC 295 (299)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~i~~---~~~s~~g~~l~s~s 295 (299)
.. .......+|.++ ..+.+-.-|..|..|++.+ ...+..+..|...+.+.. =.-.|+|++|++..
T Consensus 372 ev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 372 EL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred cc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 33 223456678877 7777788899999999876 345555655554111111 12478999999876
Q ss_pred cc
Q 022324 296 FL 297 (299)
Q Consensus 296 ~~ 297 (299)
-+
T Consensus 451 k~ 452 (635)
T PRK02888 451 KF 452 (635)
T ss_pred cc
Confidence 54
No 306
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.14 E-value=0.0023 Score=50.56 Aligned_cols=181 Identities=11% Similarity=0.003 Sum_probs=114.3
Q ss_pred eEEEe-cCC-EEEEEeCCC--cEEEEecCCceeEEEecCCCceeE--EEEecCCCEEEEEcCCeEEEEecCCceeeeecc
Q 022324 116 DQCRM-KRG-LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASL--VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSR 189 (299)
Q Consensus 116 ~~~~~-~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~ 189 (299)
..+.| .++ ++-+.+.-| .|+.+|+.+++.......+..... ++...+.-+.+.=.++...+||..+-+.+-.-.
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~ 127 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP 127 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe
Confidence 34777 777 666666666 799999999998888877765554 555433222227778999999998765332211
Q ss_pred CCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc-----CCceeEEEeCCCCeEEEEeCCCcEEEEeCCCC
Q 022324 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-----CAPVTSLSLSEDQLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 264 (299)
-... ...+..++..|+.......+.++|..+.+....+... -..++.+.+-.+...|-.-....|...|..+|
T Consensus 128 y~~E--GWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG 205 (264)
T PF05096_consen 128 YPGE--GWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETG 205 (264)
T ss_dssp -SSS----EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-
T ss_pred cCCc--ceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCC
Confidence 1111 2345577888888888889999999988777666522 23466777766566676777788999999999
Q ss_pred ceEEEeecc-----------C--CCCcEEEEEccCC-CCeEEeeeccc
Q 022324 265 QRVATLRST-----------D--CTGHIICLMYPQF-LHMLFFLCFLP 298 (299)
Q Consensus 265 ~~~~~~~~~-----------~--~~~~i~~~~~s~~-g~~l~s~s~~~ 298 (299)
+.+..+... . ...-.+.+|++|. ++++++|=.+|
T Consensus 206 ~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp 253 (264)
T PF05096_consen 206 KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWP 253 (264)
T ss_dssp BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-S
T ss_pred eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCC
Confidence 988766210 0 0126899999875 55667776554
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.13 E-value=0.00025 Score=60.88 Aligned_cols=148 Identities=10% Similarity=-0.030 Sum_probs=97.2
Q ss_pred CCEEEEEeCCCcEEEEecCCceeEEEecCCCce--------eEEEEec---CCCEEEEEcCCeEEEEecCCceeeeeccC
Q 022324 122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA--------SLVDFDF---DESKIVGLIGTRICIWRRNGLRSVFPSRE 190 (299)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 190 (299)
++.++.++.+|.+...|..+|+.+...+...+. ..+..+| ++..++++.+|.+..+|..+++.......
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 284 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY 284 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC
Confidence 345677788899999999999877665422110 0011111 33334488899999999998876655433
Q ss_pred CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC-CceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEE
Q 022324 191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVAT 269 (299)
Q Consensus 191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 269 (299)
+... .....+..++.++.++.+..+|..+++.+....... ....+.... +..++.++.||.|.+.|..+|+.+.+
T Consensus 285 ~~~~---~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 285 GSVN---DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred CCcc---CcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 2211 223346678888899999999999998776543211 112222222 35788889999999999999998887
Q ss_pred eecc
Q 022324 270 LRST 273 (299)
Q Consensus 270 ~~~~ 273 (299)
.+..
T Consensus 361 ~~~~ 364 (394)
T PRK11138 361 QKVD 364 (394)
T ss_pred EEcC
Confidence 7654
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.11 E-value=6.1e-05 Score=59.67 Aligned_cols=183 Identities=11% Similarity=0.170 Sum_probs=111.9
Q ss_pred cCeeEEEe--cCC--EEEEEeCCCcEEEEecCCce-------------------------------------eE-----E
Q 022324 113 VGVDQCRM--KRG--LILTGVGDKVMRLWSLEGYK-------------------------------------CV-----E 146 (299)
Q Consensus 113 ~~i~~~~~--~~~--~l~s~~~dg~i~iwd~~~~~-------------------------------------~~-----~ 146 (299)
..|..+.| +.+ .++..+.|.+|++|.+.... .+ +
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 45777877 333 77788899999999875320 00 0
Q ss_pred Ee-cCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeec---cCCc------cceeeeeccCCCe-EEEecCCCc
Q 022324 147 EY-SLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS---REGT------FMKGLCMRYFDPE-AVVGCEDGT 214 (299)
Q Consensus 147 ~~-~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~---~~~~------~~~~~~~~~~~~~-l~s~~~d~~ 214 (299)
.+ ..|...+. +.+..|...++.+.|-.|.+|++.-....+.. .... +....-++|.... +.-.+..|.
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred eccccceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 00 11222232 77777777788888889999998754322211 1100 0111234444333 555677899
Q ss_pred EEEEEcCCcce------eee----------ccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC-ceEEEeeccCCC
Q 022324 215 ARVFDMYSRKC------SQI----------IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD-QRVATLRSTDCT 276 (299)
Q Consensus 215 i~iwd~~~~~~------~~~----------~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~ 276 (299)
|++-|++.... +.. +..-...|..+.|+++ +++++-+. -+++|||++.. .++.++..|...
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l 324 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDL 324 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHH
Confidence 99999984321 111 1122356889999999 77777654 57999999864 567777444320
Q ss_pred ----------CcE---EEEEccCCCCeEEeeec
Q 022324 277 ----------GHI---ICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 277 ----------~~i---~~~~~s~~g~~l~s~s~ 296 (299)
..| ..+.||-|.+.+++||.
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 123 45788888888888875
No 309
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=0.00011 Score=62.57 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=92.7
Q ss_pred EEEEecCCCEEEEEcCCeEEEEecCCceee-eeccCCccceeeeeccCCCeEEEecC-----------CCcEEEEEcCCc
Q 022324 156 LVDFDFDESKIVGLIGTRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCE-----------DGTARVFDMYSR 223 (299)
Q Consensus 156 ~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~ 223 (299)
.+.|||-|.+|+......|.+|--.+-..+ ...|.+. .-+.++|...+|++-+. ...+.|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~V--q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGV--QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHHHHHhccCCCc--eeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 499999999999888888999976554322 1223322 23589999999887432 256999999999
Q ss_pred ceeeecccc--CCce-eEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022324 224 KCSQIIRMH--CAPV-TSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 224 ~~~~~~~~~--~~~i-~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 293 (299)
...+.|... ...+ .-..||-| +++|.-.. .+|.||+..+-.++..-...-. .|....|+|.+..||-
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~--gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKIS--GIRDFSWSPTSNLLAY 363 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCc--cccCcccCCCcceEEE
Confidence 998888642 2222 34678877 88877766 5699999877544432222223 6899999999888873
No 310
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.05 E-value=0.0017 Score=51.18 Aligned_cols=158 Identities=13% Similarity=0.043 Sum_probs=91.4
Q ss_pred eEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC-------CceeE-EEEecCC-------CEEEEEcCCeEEEEe
Q 022324 116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-------NAASL-VDFDFDE-------SKIVGLIGTRICIWR 178 (299)
Q Consensus 116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~-~~~~~~~-------~~l~~~~d~~i~v~d 178 (299)
..++| +|+ +||.+...|+|+++|+.. ..+..+... ...++ +.|-+.. .+++...+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 34778 666 899999999999999874 333333321 12333 5553322 334577777777666
Q ss_pred cCC--ce-----ee--eeccCCccceeeeeccCCCeEEEecCC-C----------cEEEEEcCCccee------------
Q 022324 179 RNG--LR-----SV--FPSREGTFMKGLCMRYFDPEAVVGCED-G----------TARVFDMYSRKCS------------ 226 (299)
Q Consensus 179 ~~~--~~-----~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d-~----------~i~iwd~~~~~~~------------ 226 (299)
+.. .+ .. +..+-........+++....|+.|+.. . -+..|.+-++.+-
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~ 205 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT 205 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence 532 11 11 111111112233555555555554421 1 1445543221100
Q ss_pred -----------ee---c---cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022324 227 -----------QI---I---RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 227 -----------~~---~---~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
.. + ......|..|..+|| +.||+...+|.|.+|++.+-++...+..++
T Consensus 206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 00 0 123567899999999 999999999999999999888777776554
No 311
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.04 E-value=0.0016 Score=61.62 Aligned_cols=174 Identities=10% Similarity=0.057 Sum_probs=110.1
Q ss_pred cccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEE------------------------ec---------------
Q 022324 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE------------------------YS--------------- 149 (299)
Q Consensus 111 h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~------------------------~~--------------- 149 (299)
-...|.+++| ||+ +|+..+.++++.+.+- +.+++.. |+
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 4567888999 666 8888888888877652 1111111 10
Q ss_pred ----------CCCceeEEEEecCCCEEE-EEc---C---CeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecC-
Q 022324 150 ----------LPNAASLVDFDFDESKIV-GLI---G---TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE- 211 (299)
Q Consensus 150 ----------~~~~~~~~~~~~~~~~l~-~~~---d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~- 211 (299)
..+..+.++|-.||.+++ .+. . ..++||+-++...............++|.|.|..+++.-.
T Consensus 198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence 112345588999999988 443 2 4899999875532222233333346799999998877543
Q ss_pred --CCcEEEEEcCCcceeeecc----ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc--eEEEeeccCCCCcEEEE
Q 022324 212 --DGTARVFDMYSRKCSQIIR----MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGHIICL 282 (299)
Q Consensus 212 --d~~i~iwd~~~~~~~~~~~----~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~i~~~ 282 (299)
...|.+|. ++|-...+|. .....|..+.|+++ ..||..-.|. |++|-..+.. +-+.+...... .+..+
T Consensus 278 ~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~-~~~~~ 354 (928)
T PF04762_consen 278 PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSE-SVNFV 354 (928)
T ss_pred CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCC-CCCce
Confidence 34466665 3454444443 34567999999999 8888877655 9999987754 23444433322 45568
Q ss_pred EccCCC
Q 022324 283 MYPQFL 288 (299)
Q Consensus 283 ~~s~~g 288 (299)
.|+|..
T Consensus 355 ~Wdpe~ 360 (928)
T PF04762_consen 355 KWDPEK 360 (928)
T ss_pred EECCCC
Confidence 999854
No 312
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.03 E-value=0.00031 Score=60.33 Aligned_cols=135 Identities=10% Similarity=0.082 Sum_probs=89.2
Q ss_pred cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccC--Cccceee
Q 022324 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE--GTFMKGL 197 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~ 197 (299)
.++.++.++.+|.+...|..+|+.+........ ..+. ..+..++ ++.+|.+..+|..+++....... .....
T Consensus 255 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~-- 329 (394)
T PRK11138 255 VGGVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT-- 329 (394)
T ss_pred ECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCccc--
Confidence 355777888899999999999988766543221 1122 2344454 88899999999988865543321 11110
Q ss_pred eeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE-EEeCCCCeEEEEeCCCcEEEEeC
Q 022324 198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS-LSLSEDQLIISGSSLGSIAISGL 261 (299)
Q Consensus 198 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~-~~~~~~~~l~~~~~dg~i~iwd~ 261 (299)
.-...+..++.++.+|.+...|..+|+.+.........+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 330 sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 330 APVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence 11123567888999999999999999988776543332321 222 2357888899999988764
No 313
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.00014 Score=64.43 Aligned_cols=140 Identities=9% Similarity=0.080 Sum_probs=106.5
Q ss_pred CeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCC
Q 022324 114 GVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG 191 (299)
Q Consensus 114 ~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~ 191 (299)
.-.++.| +.|+++-|+. ..|.+-|..+.+.++.++.|...+. +.|.|......
T Consensus 17 N~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~------------------------ 71 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRD------------------------ 71 (1062)
T ss_pred cccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchh------------------------
Confidence 3556788 4557777765 5677889999999999998876555 88877431110
Q ss_pred ccceeeeecc--CCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-----CeEEEEeCCCcEEEEeCCCC
Q 022324 192 TFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-----QLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 192 ~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~ 264 (299)
-+++ ....++++.-.|.|.+||...+..+..+..+..++..++|-+. .+|++-....+|.+|+..+|
T Consensus 72 ------llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 72 ------LLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred ------ccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence 1111 1233788999999999999999988889888999999999752 46777788899999999999
Q ss_pred ceEEEeeccCCCCcEEEEEccC
Q 022324 265 QRVATLRSTDCTGHIICLMYPQ 286 (299)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~s~ 286 (299)
+.+......+. ...++.++|
T Consensus 146 ~k~Wk~~ys~~--iLs~f~~DP 165 (1062)
T KOG1912|consen 146 EKFWKYDYSHE--ILSCFRVDP 165 (1062)
T ss_pred ceeeccccCCc--ceeeeeeCC
Confidence 99888877666 677788877
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.99 E-value=0.00071 Score=52.58 Aligned_cols=123 Identities=12% Similarity=0.041 Sum_probs=86.2
Q ss_pred cCCC-EEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeE
Q 022324 161 FDES-KIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS 238 (299)
Q Consensus 161 ~~~~-~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~ 238 (299)
++.+ +++ ++..+.+.--|..++...++..-+.....-++. -++.++.|...|.+++.+..+|+....+..-...=..
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~ 98 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR 98 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc
Confidence 4443 444 888899999999888766655443322121222 4666899999999999999999888887643332233
Q ss_pred EEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccC
Q 022324 239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQ 286 (299)
Q Consensus 239 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 286 (299)
....++ ..+..|+.|+..+..|.++..++...+.... ...+-+..|
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~ 145 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAP 145 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecC
Confidence 445677 8999999999999999999999888765544 333334445
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.95 E-value=0.00011 Score=63.16 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=66.8
Q ss_pred EEEecCCcee----EEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEe
Q 022324 135 RLWSLEGYKC----VEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG 209 (299)
Q Consensus 135 ~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 209 (299)
.+|++...+. +..+..+..+++++++|++..++ |+.||+|.+||...+........ -....++|+|++..+++|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~-~~P~~iaWHp~gai~~V~ 317 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAE-FIPTLIAWHPDGAIFVVG 317 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeec-ccceEEEEcCCCcEEEEE
Confidence 4455544432 33455677888899999999988 99999999999987754433222 333467999999999999
Q ss_pred cCCCcEEEEEcCCc
Q 022324 210 CEDGTARVFDMYSR 223 (299)
Q Consensus 210 ~~d~~i~iwd~~~~ 223 (299)
+..|.+.+||+.-.
T Consensus 318 s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 318 SEQGELQCFDMALS 331 (545)
T ss_pred cCCceEEEEEeecC
Confidence 99999999998643
No 316
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.92 E-value=0.0013 Score=44.41 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=60.2
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCccceeeeeccCC
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD 203 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (299)
.|+.|+.|..|++|+- .+.+..+...+.++.++-...+++.++..+|+|-+|+-....-..+... .......+..++
T Consensus 17 eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~RlWRiKSK~-~~~~~~~~D~~g 93 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQRLWRIKSKN-QVTSMAFYDING 93 (111)
T ss_pred eEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcceeeeeccCC-CeEEEEEEcCCC
Confidence 8999999999999964 4677788877778886666665544599999999998754432222211 122222333332
Q ss_pred ---CeEEEecCCCcEE
Q 022324 204 ---PEAVVGCEDGTAR 216 (299)
Q Consensus 204 ---~~l~s~~~d~~i~ 216 (299)
+.|++|-.+|.|-
T Consensus 94 dG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 94 DGVPELIVGWSNGKVE 109 (111)
T ss_pred CCceEEEEEecCCeEE
Confidence 2388888888764
No 317
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.91 E-value=0.0004 Score=63.42 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=61.7
Q ss_pred EEEecCCCcEEEEEcCCcc--eeee-cc--ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEe-eccCCCCcE
Q 022324 206 AVVGCEDGTARVFDMYSRK--CSQI-IR--MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL-RSTDCTGHI 279 (299)
Q Consensus 206 l~s~~~d~~i~iwd~~~~~--~~~~-~~--~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i 279 (299)
.+.|-.++.+..||+|-.. ++.. .. .......|++-+.+.+||+|+.+|.||+||- .|..-++. .+-.. +|
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~--pI 621 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGD--PI 621 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCC--Ce
Confidence 4667778888889988532 2211 11 2345577887777789999999999999994 45433333 33344 99
Q ss_pred EEEEccCCCCeEEeee
Q 022324 280 ICLMYPQFLHMLFFLC 295 (299)
Q Consensus 280 ~~~~~s~~g~~l~s~s 295 (299)
.+|..+.||+++++.+
T Consensus 622 ~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 622 IGIDVTADGKWILATC 637 (794)
T ss_pred eEEEecCCCcEEEEee
Confidence 9999999999988765
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00017 Score=63.27 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=91.2
Q ss_pred EEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCccee-----e
Q 022324 156 LVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS-----Q 227 (299)
Q Consensus 156 ~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~ 227 (299)
.-+++..+++++ |+.-|.+++|+-.++........ .....+.++++++.++++|+..|.|.++.+..+..- .
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 367788889998 99999999999888764433332 222335678888888999999999999988763221 1
Q ss_pred ec-cccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC----ceEEEeeccCCCCcEEEEEcc
Q 022324 228 II-RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD----QRVATLRSTDCTGHIICLMYP 285 (299)
Q Consensus 228 ~~-~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~i~~~~~s 285 (299)
.. +.|...|++++|+++ ..+.+|...|+|..-.+... -..+.+..... .|..+...
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds--~IVQlD~~ 179 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS--EIVQLDYL 179 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc--ceEEeecc
Confidence 11 147889999999999 89999999999998888762 11233333333 67666653
No 319
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.89 E-value=0.003 Score=50.45 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=81.7
Q ss_pred EEEec-CCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc---
Q 022324 157 VDFDF-DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--- 231 (299)
Q Consensus 157 ~~~~~-~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--- 231 (299)
..|.+ ++.+++ -...+.|+.|+..+.......... ...+++...+..++.+...+ +.++|..+++.......
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC
Confidence 56777 444444 445789999999888654333333 22345553345566665544 55669888765433322
Q ss_pred --cCCceeEEEeCCC-CeEEEEeCC--------CcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 232 --HCAPVTSLSLSED-QLIISGSSL--------GSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 232 --~~~~i~~~~~~~~-~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
.....+.+++.|+ ++.++.... |.|..++.. ++.......- . ..+.++|+|+++.|+.+.
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-~--~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-G--FPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-S--SEEEEEEETTSSEEEEEE
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-c--cccceEECCcchheeecc
Confidence 3456889999999 777766543 557788876 5544434332 3 689999999999877543
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.88 E-value=0.0017 Score=60.70 Aligned_cols=176 Identities=14% Similarity=0.007 Sum_probs=114.1
Q ss_pred cCeeEEEe-cC-CEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecC----Cc---
Q 022324 113 VGVDQCRM-KR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN----GL--- 182 (299)
Q Consensus 113 ~~i~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~----~~--- 182 (299)
+.|.++.| .+ +.++.+..+|.|.+-|.++......-...+++..++|+||+..++ .+..+++.+-+-. ..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 57888877 33 388888889999999988876655445567788899999999999 8888877764321 00
Q ss_pred --------e----------eeeeccC---------------------CccceeeeeccCCCeEEE-----ecCCCcEEEE
Q 022324 183 --------R----------SVFPSRE---------------------GTFMKGLCMRYFDPEAVV-----GCEDGTARVF 218 (299)
Q Consensus 183 --------~----------~~~~~~~---------------------~~~~~~~~~~~~~~~l~s-----~~~d~~i~iw 218 (299)
+ ..+.+.. ++.. .++|.-+++++++ ......|++|
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~-~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKT-SISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCc-eEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 0111110 1111 2578888888766 3333789999
Q ss_pred EcCCcceeeeccccCCceeEEEeCCC-CeEEEEe---CCCcEEEEeCCCCceE----EEeeccCCCCcEEEEEccCCCCe
Q 022324 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS---SLGSIAISGLSSDQRV----ATLRSTDCTGHIICLMYPQFLHM 290 (299)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~---~dg~i~iwd~~~~~~~----~~~~~~~~~~~i~~~~~s~~g~~ 290 (299)
|.+ |..-..-....+.=.+++|-|. ..+++-. +|+.|.+|..+ |..- -.+..... ++..++|+.++..
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~--~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEK--EVEELAWNSNSDI 303 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCccccc--chheeeecCCCCc
Confidence 987 4432222222333457888887 6666653 36679999853 4322 22222333 5999999999999
Q ss_pred EEe
Q 022324 291 LFF 293 (299)
Q Consensus 291 l~s 293 (299)
||.
T Consensus 304 LAv 306 (1265)
T KOG1920|consen 304 LAV 306 (1265)
T ss_pred eee
Confidence 887
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0021 Score=57.94 Aligned_cols=178 Identities=11% Similarity=0.150 Sum_probs=109.7
Q ss_pred CeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEecCCCce-eE-EEEecCCCEEE-EEcCC-----eEEEEecCCc---
Q 022324 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SL-VDFDFDESKIV-GLIGT-----RICIWRRNGL--- 182 (299)
Q Consensus 114 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~-~~~d~-----~i~v~d~~~~--- 182 (299)
.|.|+.-..+.++.|+.+|.|.+.+- ..+.++.++..... +. +....+...|+ .+.|+ .+++|+++..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 66666666779999999999988763 34555666655433 33 33333435565 44433 6899998643
Q ss_pred ---eee----eecc----CCccceeeeeccCCCeEEEecCCCcEEEEEcC---C-cceeeeccccCCceeEEEeCCC-Ce
Q 022324 183 ---RSV----FPSR----EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---S-RKCSQIIRMHCAPVTSLSLSED-QL 246 (299)
Q Consensus 183 ---~~~----~~~~----~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---~-~~~~~~~~~~~~~i~~~~~~~~-~~ 246 (299)
+.. ...+ ......+++++.+-..++.|-.+|.|..+.-+ . +....-.....++|+.+++..+ ..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 111 1111 12233456777777779999999999988532 1 2222222245789999999876 43
Q ss_pred -EEEEeCCCcEEEEeCCCCce-EEEeeccCCCCcEEEEEccCCCC-eEEeee
Q 022324 247 -IISGSSLGSIAISGLSSDQR-VATLRSTDCTGHIICLMYPQFLH-MLFFLC 295 (299)
Q Consensus 247 -l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~g~-~l~s~s 295 (299)
++++. ...|.+|.+....+ +..+..+.. .+.|.+|++... ++++++
T Consensus 186 ~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~--~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 186 VLFVAT-TEQVMLYSLSGRTPSLKVLDNNGI--SLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred eEEEEe-cceeEEEEecCCCcceeeeccCCc--cceeeecCCCCccEEEecC
Confidence 33333 45689999873332 333544444 899999987555 555554
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0019 Score=55.62 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=97.3
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCC--eEEEEecCCceeee-eccCCccceeeeeccCCCeE
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEA 206 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~--~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 206 (299)
..+.++++++++.............-+|+|||+.|+ ...|| .|+++|+.+..... ....+ ....-.|+|++.++
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~g-i~~~Ps~spdG~~i 296 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFG-INTSPSWSPDGSKI 296 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCc-cccCccCCCCCCEE
Confidence 458999999888776666555556689999999988 44555 67777887765222 22222 22234799999995
Q ss_pred EE-ecCCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeC-CCc--EEEEeCCCCceEEEeeccCCCCcE
Q 022324 207 VV-GCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGS--IAISGLSSDQRVATLRSTDCTGHI 279 (299)
Q Consensus 207 ~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~i 279 (299)
+- .+..|. |.++|++.+.. ..+......-..-.++|| ++++..+. +|. |.+.|+.++..++.+.... ..
T Consensus 297 vf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~ 372 (425)
T COG0823 297 VFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LN 372 (425)
T ss_pred EEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc---cC
Confidence 54 444554 56666665544 333222222226678898 76666654 454 6777776665444443322 34
Q ss_pred EEEEccCCCCeEEeee
Q 022324 280 ICLMYPQFLHMLFFLC 295 (299)
Q Consensus 280 ~~~~~s~~g~~l~s~s 295 (299)
..-.|.|+|+.+...+
T Consensus 373 e~ps~~~ng~~i~~~s 388 (425)
T COG0823 373 ESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCCCcCCCCceEEEec
Confidence 4557778887766543
No 323
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.77 E-value=0.0028 Score=53.78 Aligned_cols=159 Identities=9% Similarity=0.052 Sum_probs=104.1
Q ss_pred EeCCCcEEEEecCCceeEEEecC-CCceeEEEEecCCCEEE--EE----------cCCeEEEEecCCceeeee-ccCCcc
Q 022324 128 GVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV--GL----------IGTRICIWRRNGLRSVFP-SREGTF 193 (299)
Q Consensus 128 ~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~--~~----------~d~~i~v~d~~~~~~~~~-~~~~~~ 193 (299)
.+.++.+++|.+..++.+.+-.. .-..+.+.|.+.|++++ .- .+.++++++++....... ...+.+
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pV 277 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPV 277 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccc
Confidence 45677888888876655543332 22334578888888754 11 124788888875543333 333443
Q ss_pred ceeeeeccCCCe--EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCC---CcEEEEeCCCCceE
Q 022324 194 MKGLCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL---GSIAISGLSSDQRV 267 (299)
Q Consensus 194 ~~~~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d---g~i~iwd~~~~~~~ 267 (299)
- -.+|.|.+.. +++|-.+..+.++|++.. ....+ ..+.=+.+.|+|. ++++.++-| |.+-+||......+
T Consensus 278 h-df~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 278 H-DFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred e-eeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 3 4689889888 455668889999999954 43333 3455677889999 888887764 67999998755443
Q ss_pred E-EeeccCCCCcEEEEEccCCCCeEEee
Q 022324 268 A-TLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 268 ~-~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
. .+.+.. -+-+.|+|||+++.+.
T Consensus 354 ~~~~~~~n----~s~~~wspd~qF~~~~ 377 (561)
T COG5354 354 AGAFNGLN----TSYCDWSPDGQFYDTD 377 (561)
T ss_pred EEEeecCC----ceEeeccCCceEEEec
Confidence 3 555443 4556899999988765
No 324
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.0036 Score=56.00 Aligned_cols=188 Identities=14% Similarity=0.054 Sum_probs=119.7
Q ss_pred eEEeeccccCeeEEEe-c----------C--C-EEEEEeCCCcEEEEecCCceeEEEecCCCceeE-EEEec---CC-CE
Q 022324 105 IDQWKAHSVGVDQCRM-K----------R--G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDF---DE-SK 165 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~----------~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~---~~-~~ 165 (299)
++++.-|...|+.+.| | . . +|+++...|.|.+||...+..+..++.+...+. ++|-+ +. ..
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~ 127 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDV 127 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhe
Confidence 5666889999999988 2 1 1 578888899999999999888888887765544 77754 33 23
Q ss_pred EE-EEcCCeEEEEecCCceeeeeccCCc-cceeeeeccCCCe-EEEecCCCcEEEEEcC-C------cceeeeccccCC-
Q 022324 166 IV-GLIGTRICIWRRNGLRSVFPSREGT-FMKGLCMRYFDPE-AVVGCEDGTARVFDMY-S------RKCSQIIRMHCA- 234 (299)
Q Consensus 166 l~-~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~-~------~~~~~~~~~~~~- 234 (299)
++ -.....+.+|+..+++..++...++ ...++.+.|.+.. +..-+..|.+-+-+.- . ++..+.-..|.+
T Consensus 128 LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl 207 (1062)
T KOG1912|consen 128 LLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL 207 (1062)
T ss_pred eEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence 44 6777899999999987666554443 3334566666655 5555556666555432 1 122111111111
Q ss_pred ------------------------ceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC-
Q 022324 235 ------------------------PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL- 288 (299)
Q Consensus 235 ------------------------~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g- 288 (299)
....++|+|. +-++-......+.++|++-..++.......+ .+.-+.+-|++
T Consensus 208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPR 285 (1062)
T ss_pred hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCC
Confidence 1122567887 5455555677799999988888888877666 44445555543
Q ss_pred -CeEEee
Q 022324 289 -HMLFFL 294 (299)
Q Consensus 289 -~~l~s~ 294 (299)
..|++.
T Consensus 286 rd~Lfcl 292 (1062)
T KOG1912|consen 286 RDALFCL 292 (1062)
T ss_pred cceEEEE
Confidence 445543
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.76 E-value=0.0052 Score=53.16 Aligned_cols=131 Identities=8% Similarity=0.028 Sum_probs=74.6
Q ss_pred ceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc
Q 022324 153 AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH 232 (299)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 232 (299)
.+..+.++|+++.++.+.+|.-.+|..........+. .. -.+|.. ...+++-..++.|.++.--+.+....+..
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~---g~-~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~- 107 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS---GL-SFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKL- 107 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE----S-EEEE-T-SSEEEEE-TTS-EEEEETTEE-TT------
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc---ee-EEEEec-CccEEEEECCCeEEEEEcCccccceEEcC-
Confidence 4567999999999998899999999854433222211 11 236666 44466666688899974333333333432
Q ss_pred CCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 233 CAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 233 ~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
...+..+-. +.+|+..+.+ .|.+||..+++.++++... +|..+.|+++|.+++..+-
T Consensus 108 ~~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 108 PFSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp SS-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S
T ss_pred CcccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEeC
Confidence 122444422 6556555544 8999999999999998644 5899999999999987653
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.74 E-value=0.0059 Score=52.11 Aligned_cols=196 Identities=14% Similarity=0.140 Sum_probs=104.3
Q ss_pred cCceeeEEeeccccCeeEEEecC-CEEEEEeCCCcEEEEecCCceeEEEecCC---------CceeEEEEe-----cCC-
Q 022324 100 EGRIDIDQWKAHSVGVDQCRMKR-GLILTGVGDKVMRLWSLEGYKCVEEYSLP---------NAASLVDFD-----FDE- 163 (299)
Q Consensus 100 ~g~~~~~~~~~h~~~i~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~-----~~~- 163 (299)
.|-.+...++...++|++++.++ |+++.|..+|.+.|.|++....+..-... ..+..+.|. .|+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred cccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 34445666677799999999954 59999999999999999887776653211 123345554 222
Q ss_pred --CEEE-EEcCCeEEEEecC-Cc--e--eee----eccCCccceeeeeccCC--------------------CeEEEecC
Q 022324 164 --SKIV-GLIGTRICIWRRN-GL--R--SVF----PSREGTFMKGLCMRYFD--------------------PEAVVGCE 211 (299)
Q Consensus 164 --~~l~-~~~d~~i~v~d~~-~~--~--~~~----~~~~~~~~~~~~~~~~~--------------------~~l~s~~~ 211 (299)
-.++ |+..|.+.+|.+. .. . ..+ ..+.+....+..++.+. +.++....
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 1244 8999999999874 11 1 111 12223333233332110 11344444
Q ss_pred CCcEEEEEcCCcceeeeccccCCceeEEEeC-----CC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCC--CcEEEEE
Q 022324 212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-----ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT--GHIICLM 283 (299)
Q Consensus 212 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-----~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~i~~~~ 283 (299)
+..++++...+.+.........-....+.+- .. ..|++-..+|.++++.+..-+.+..++..... ..+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 6789999988776654433221222333342 23 56888889999999999998888777664321 1345567
Q ss_pred ccCCCCeEEeee
Q 022324 284 YPQFLHMLFFLC 295 (299)
Q Consensus 284 ~s~~g~~l~s~s 295 (299)
++++|..++-.+
T Consensus 314 is~~Gdi~~~~g 325 (395)
T PF08596_consen 314 ISRNGDIFYWTG 325 (395)
T ss_dssp E-TTS-EEEE-S
T ss_pred ECCCCCEEEEeC
Confidence 788888776543
No 327
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.74 E-value=0.0013 Score=55.78 Aligned_cols=152 Identities=13% Similarity=0.072 Sum_probs=97.6
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE---EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEE
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV---GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV 208 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 208 (299)
.++.++++....+--.....+++...+|.|.++.++ |...-.+.++|+++. ..+..++.... .+.++|...+++.
T Consensus 255 snLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rN-T~~fsp~~r~il~ 332 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRN-TIFFSPHERYILF 332 (561)
T ss_pred ceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccc-cccccCcccEEEE
Confidence 456677666333222223345556699999988765 456789999999988 44444444433 3478888888777
Q ss_pred ecCC---CcEEEEEcCCcceee-eccccCCceeEEEeCCC-CeEEEEeC------CCcEEEEeCCCCceEEEeeccCCCC
Q 022324 209 GCED---GTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLRSTDCTG 277 (299)
Q Consensus 209 ~~~d---~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~ 277 (299)
++.| |.+-+||......+. .+.+. ...-+.|+|| +++.+... |..|.|||+. |..+.
T Consensus 333 agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~-g~~~f--------- 400 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY-GAKVF--------- 400 (561)
T ss_pred ecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec-Cchhh---------
Confidence 6554 669999987544333 45332 2455679999 77666543 7889999985 33222
Q ss_pred cEEEEEccCCCCeEEeeecc
Q 022324 278 HIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 278 ~i~~~~~s~~g~~l~s~s~~ 297 (299)
..+.+.|.|.|++..+.|..
T Consensus 401 el~~~~W~p~~~~~ttsSs~ 420 (561)
T COG5354 401 ELTNITWDPSGQYVTTSSSC 420 (561)
T ss_pred hhhhccccCCcccceeeccC
Confidence 35566777777776665543
No 328
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.69 E-value=0.021 Score=47.68 Aligned_cols=137 Identities=11% Similarity=0.141 Sum_probs=88.6
Q ss_pred EEEEEeC----------CCcEEEEecCCc-------eeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCce-ee
Q 022324 124 LILTGVG----------DKVMRLWSLEGY-------KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR-SV 185 (299)
Q Consensus 124 ~l~s~~~----------dg~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~-~~ 185 (299)
+++.|+. .|.|.++++... +.+.......++.+++-- +..++++.++.|.+|++.... ..
T Consensus 44 ~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~ 121 (321)
T PF03178_consen 44 YIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLL 121 (321)
T ss_dssp EEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEE
T ss_pred EEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccch
Confidence 7776654 289999999884 233444455666664443 445777778999999998776 22
Q ss_pred eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC-cceeeecc--ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022324 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (299)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~ 261 (299)
..........+.++...+++++.|+....+.++..+. ...+..+. .....++++.+-++ +.++.+..+|.+.++..
T Consensus 122 ~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 122 KKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred hhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 2222212223567777788999999888888875443 22222222 23456888888756 79999999999999987
Q ss_pred C
Q 022324 262 S 262 (299)
Q Consensus 262 ~ 262 (299)
.
T Consensus 202 ~ 202 (321)
T PF03178_consen 202 N 202 (321)
T ss_dssp -
T ss_pred C
Confidence 6
No 329
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.68 E-value=0.00013 Score=38.83 Aligned_cols=37 Identities=30% Similarity=0.449 Sum_probs=31.9
Q ss_pred ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe
Q 022324 224 KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (299)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd 260 (299)
+....+..|...|.++.|+++ .++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445566678889999999998 8999999999999996
No 330
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.67 E-value=0.018 Score=45.76 Aligned_cols=186 Identities=10% Similarity=0.037 Sum_probs=104.7
Q ss_pred EeeccccCeeEEEe-cC-C-EEEEEeCCCcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEEEE-cCCeEEEEecC
Q 022324 107 QWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGL-IGTRICIWRRN 180 (299)
Q Consensus 107 ~~~~h~~~i~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~-~d~~i~v~d~~ 180 (299)
.+.+-...+..++| ++ + ++++....+.|...+. +|+.+..+.... ..-.+++..++.+++.. .++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 34566667999999 54 4 6677777788888886 488888776443 23337777777666655 47899999884
Q ss_pred Cce-----e---eee--cc--CCccceeeeeccCCCeEEEecCCCcEEEEEcCC---cceeeec--------cccCCcee
Q 022324 181 GLR-----S---VFP--SR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---RKCSQII--------RMHCAPVT 237 (299)
Q Consensus 181 ~~~-----~---~~~--~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~--------~~~~~~i~ 237 (299)
... . .+. .. .+...-.+++.+.++.|+.+-+..-..+|.++. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 1 111 11 111123578988888877777666666776653 1111111 12334578
Q ss_pred EEEeCCC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCC-------CCcEEEEEccCCCCeEEee
Q 022324 238 SLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDC-------TGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 238 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~i~~~~~s~~g~~l~s~ 294 (299)
+++++|. .+++.......|..+| .+|+.+..+.-..+ ....-.|+|+++|++.+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 8999987 6777778888999999 57887776654331 0157889999999877764
No 331
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.61 E-value=0.0092 Score=46.64 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=88.3
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeec-cCCccceeeeecc
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS-REGTFMKGLCMRY 201 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~ 201 (299)
+++.|+..+.++--|..+|+....-......-.-+.- -+++++ |+..|.+++.+.+++.....- ..+.+.....+.+
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~ 103 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF 103 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC
Confidence 8999999999999999999987655443322221111 355666 999999999999998533221 1122221235778
Q ss_pred CCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcE
Q 022324 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (299)
Q Consensus 202 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (299)
++..+..|+.|+..+..|.++..++...+...+...+-+..|. ..|..+...|.+
T Consensus 104 ~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 8888999999999999999999888887654443444445553 334444444433
No 332
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.57 E-value=4.3e-05 Score=43.67 Aligned_cols=46 Identities=41% Similarity=0.577 Sum_probs=38.7
Q ss_pred hccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHh
Q 022324 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC 69 (299)
Q Consensus 24 ~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~ 69 (299)
|..+|.|+..+|+++++..+..++..+|+.|+.++.+..+|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 4578999999999999999999999999999999986689987653
No 333
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00056 Score=59.39 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=73.0
Q ss_pred eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee-EEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeecc
Q 022324 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-SLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRST 273 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 273 (299)
.+-|+|.-+.+|.+..+|.+.+..+. .+.+.++..+...++ +++|.|| ++||+|-.||+|++.|+.++..+......
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s 103 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFS 103 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccc
Confidence 45788888889999999999999888 788888876777777 9999999 99999999999999999999888773222
Q ss_pred CCCCcEEEEEccC
Q 022324 274 DCTGHIICLMYPQ 286 (299)
Q Consensus 274 ~~~~~i~~~~~s~ 286 (299)
... .|.++-|++
T Consensus 104 ~e~-~is~~~w~~ 115 (665)
T KOG4640|consen 104 VET-DISKGIWDR 115 (665)
T ss_pred ccc-chheeeccc
Confidence 221 688888864
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0019 Score=58.23 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=81.9
Q ss_pred EEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCC-----cEEEEEcCCc------
Q 022324 157 VDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDG-----TARVFDMYSR------ 223 (299)
Q Consensus 157 ~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~------ 223 (299)
-++++++..++ |+.+|.|.+++-.-.. .-++.........+-.......|++.+.|+ .+++||++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 56677777777 9999999998865443 334444333111111111123466666554 4899998642
Q ss_pred cee---eecc----ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC--CCceEEEeeccCCCCcEEEEEccCCCCe
Q 022324 224 KCS---QIIR----MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS--SDQRVATLRSTDCTGHIICLMYPQFLHM 290 (299)
Q Consensus 224 ~~~---~~~~----~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 290 (299)
.++ +.+. ....++.+++++.+ +.+|+|-.+|.|..+.=. ..+-.+..-.+.+..+|+++++..+++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 222 1111 23567899999999 999999999999988421 1111122222333339999999988876
No 335
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.47 E-value=0.041 Score=44.72 Aligned_cols=169 Identities=13% Similarity=0.074 Sum_probs=93.0
Q ss_pred cCC-EEEEE-----eCCCcEEEEecC-CceeEEEecCCCcee-EEEEecCCCEEEEEcCC-------------------e
Q 022324 121 KRG-LILTG-----VGDKVMRLWSLE-GYKCVEEYSLPNAAS-LVDFDFDESKIVGLIGT-------------------R 173 (299)
Q Consensus 121 ~~~-~l~s~-----~~dg~i~iwd~~-~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~d~-------------------~ 173 (299)
+++ +|++. ...|.|-|||.. +.+.+.++..+.--- .+.+.||++.|+....| +
T Consensus 60 ~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 60 PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence 666 66654 446899999998 777888888665333 38888999766632222 3
Q ss_pred EEEEecCCceeeee--cc-CCcccee--eeeccCCCeEEEecCCCc-------EEEEEcCCcceeeecc-------ccCC
Q 022324 174 ICIWRRNGLRSVFP--SR-EGTFMKG--LCMRYFDPEAVVGCEDGT-------ARVFDMYSRKCSQIIR-------MHCA 234 (299)
Q Consensus 174 i~v~d~~~~~~~~~--~~-~~~~~~~--~~~~~~~~~l~s~~~d~~-------i~iwd~~~~~~~~~~~-------~~~~ 234 (299)
+...|..+++..-+ .. ..+..++ +++..++.-++..-..|. +-+++.. +.+..+. .-.+
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~ 217 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNG 217 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCC
Confidence 33333333321111 00 0011111 233333222221111111 2222222 2122221 2356
Q ss_pred ceeEEEeCCC-CeEEEEe-CCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 235 PVTSLSLSED-QLIISGS-SLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.+-+|+++++ .++++.+ ..+.+.+||..+++.+....-. .+..++-.+++ ++++++.
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCCC
Confidence 8999999998 6665555 5778999999999988776544 46777777776 6666543
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.057 Score=46.21 Aligned_cols=169 Identities=8% Similarity=0.014 Sum_probs=116.2
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE-EEc---CCeEEEEecCCceeeeeccCCccceeeee
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVFPSREGTFMKGLCM 199 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 199 (299)
..++...+..|.+.|..+.+.............++++++++.+. +.. ++.+.+.|..+.........+.....+++
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~ 167 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAV 167 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEE
Confidence 45555557899999988888888777666667799999998776 333 68899999888765444444433345789
Q ss_pred ccCCCeEEEe-cCCCcEEEEEcCCcceee-e----ccccCCceeEEEeCCC-Ce-EEEEeCC--CcEEEEeCCCCceEEE
Q 022324 200 RYFDPEAVVG-CEDGTARVFDMYSRKCSQ-I----IRMHCAPVTSLSLSED-QL-IISGSSL--GSIAISGLSSDQRVAT 269 (299)
Q Consensus 200 ~~~~~~l~s~-~~d~~i~iwd~~~~~~~~-~----~~~~~~~i~~~~~~~~-~~-l~~~~~d--g~i~iwd~~~~~~~~~ 269 (299)
.+.+..++.. ..++.+.+.|........ . . .-......+.++|+ .. .++...+ +.+...|..++.....
T Consensus 168 ~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 168 DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCCCeEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 9999975544 478899999977655553 1 2 22334567888888 53 3333333 6899999988877665
Q ss_pred eeccCCCCcEEEEEccCCCCeEEee
Q 022324 270 LRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 270 ~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
-...... ....+.++|+|+++.+.
T Consensus 247 ~~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 247 DLPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred ccccccC-CCCceeECCCCCEEEEE
Confidence 2222221 35667899999888766
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.0098 Score=51.29 Aligned_cols=158 Identities=15% Similarity=0.024 Sum_probs=90.2
Q ss_pred cEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-E-E--cC-CeEEEEecCCceeeeeccCCccceeeeeccCCCeE
Q 022324 133 VMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-G-L--IG-TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA 206 (299)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~-~--~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 206 (299)
.+.+-|.. +.....+.... ....-.|+|++..++ . . .. ..++++++.+++.............-.|+|++..+
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l 252 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL 252 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence 34444433 44444444333 333478899998866 2 2 22 35999999887532222222222245899999884
Q ss_pred -EEecCCCc--EEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe-CCCc--EEEEeCCCCceEEEeeccCCCCcE
Q 022324 207 -VVGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGS--IAISGLSSDQRVATLRSTDCTGHI 279 (299)
Q Consensus 207 -~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~i 279 (299)
++...||. |.+.|+..+.. ..+....+.-..=.|+|| +.++-.+ ..|. |.++|...+.. ..+..... .=
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~--~~ 328 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG--GN 328 (425)
T ss_pred EEEECCCCCccEEEEcCCCCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC--CC
Confidence 45555665 56667776653 334333333345678898 6555554 4554 56666654443 44443333 12
Q ss_pred EEEEccCCCCeEEeee
Q 022324 280 ICLMYPQFLHMLFFLC 295 (299)
Q Consensus 280 ~~~~~s~~g~~l~s~s 295 (299)
..-.|+|||++++..+
T Consensus 329 ~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 329 SNPVWSPDGDKIVFES 344 (425)
T ss_pred cCccCCCCCCEEEEEe
Confidence 2668999999998765
No 338
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0034 Score=53.75 Aligned_cols=137 Identities=17% Similarity=0.232 Sum_probs=94.8
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCC--------EEEEEcCCeEEEEecCCcee-ee---eccC-
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDES--------KIVGLIGTRICIWRRNGLRS-VF---PSRE- 190 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~d~~i~v~d~~~~~~-~~---~~~~- 190 (299)
+|.++.....++--|++.|+.+..+..+..+..+.+.|+.+ .++|-.+..|.-||.+-... .+ +.+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 56667777788888999999999999887755577777654 46788999999999984321 11 1111
Q ss_pred -Cccceeeeec-cCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022324 191 -GTFMKGLCMR-YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 191 -~~~~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~ 262 (299)
...... |+. ..+.++++|+.+|.|++||.-.......+.+-..+|..+..+.+ +++++.+ +..|.+.++.
T Consensus 428 ~~k~nFs-c~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFS-CFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccc-eeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 111111 332 33556999999999999997433334456677889999999988 6655544 6667777753
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.44 E-value=0.02 Score=47.08 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=92.1
Q ss_pred CEEEEEeCCCcEEEEecC-CceeEEEe----cCC-CceeE-EEEecCCCEEE-EEcCCeEEEEecCCceeeeec----cC
Q 022324 123 GLILTGVGDKVMRLWSLE-GYKCVEEY----SLP-NAASL-VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS----RE 190 (299)
Q Consensus 123 ~~l~s~~~dg~i~iwd~~-~~~~~~~~----~~~-~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~----~~ 190 (299)
.-+.+-+.||.+.-..+. .|+..... ... ++... -++...+..++ .+.+|.|+--|+......+.. ..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 368888999999888887 56654322 122 22222 44555555444 999999999999876522211 10
Q ss_pred ------C---ccceeeeeccCCCeEEEec---CCC-------cEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEE
Q 022324 191 ------G---TFMKGLCMRYFDPEAVVGC---EDG-------TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIIS 249 (299)
Q Consensus 191 ------~---~~~~~~~~~~~~~~l~s~~---~d~-------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~ 249 (299)
+ .....+++++....|+... .++ .|-++|+.+++.+..+.. ..++.+|+++.+ + +|.+
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEE
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEE
Confidence 0 0011356666555544321 122 277889999999988853 456889999977 3 5544
Q ss_pred -EeCCCcEEEEeCCCCceEEEeeccC
Q 022324 250 -GSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 250 -~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
...++.|.+||..+|+.++++..-.
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp EETTTTEEEEEETTT--EEEEE---S
T ss_pred EcCCCCeEEEEeCcCCcEEeehhccC
Confidence 4568999999999999999887544
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.41 E-value=0.048 Score=44.30 Aligned_cols=144 Identities=12% Similarity=0.094 Sum_probs=85.4
Q ss_pred CCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeec-------------
Q 022324 122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS------------- 188 (299)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~------------- 188 (299)
++.|+.|..+| +.+++.........+.....+..+...++-+.++.-.|+.++++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~ 85 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPT 85 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccc
Confidence 34888888888 8889883332222222223355588888888888777899999998754321100
Q ss_pred cCCccceeeeec----cCCCeEEEecCCCcEEEEEcCCc-----ceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEE
Q 022324 189 REGTFMKGLCMR----YFDPEAVVGCEDGTARVFDMYSR-----KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (299)
Q Consensus 189 ~~~~~~~~~~~~----~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iw 259 (299)
.......+..+. ..+...+......+|.+|..... +...++. -.+.+.+++|.++ .++.|..++ ..+.
T Consensus 86 ~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v~~~~~-f~~i 162 (275)
T PF00780_consen 86 KLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICVGTSKG-FYLI 162 (275)
T ss_pred cccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEEEeCCc-eEEE
Confidence 001111122222 22223333344458888877642 3455553 4577899999855 566666444 8889
Q ss_pred eCCCCceEEE
Q 022324 260 GLSSDQRVAT 269 (299)
Q Consensus 260 d~~~~~~~~~ 269 (299)
|+.++.....
T Consensus 163 dl~~~~~~~l 172 (275)
T PF00780_consen 163 DLNTGSPSEL 172 (275)
T ss_pred ecCCCCceEE
Confidence 9987765433
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.41 E-value=0.016 Score=51.50 Aligned_cols=82 Identities=5% Similarity=-0.073 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe---------------------------------------
Q 022324 212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--------------------------------------- 251 (299)
Q Consensus 212 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--------------------------------------- 251 (299)
.+.+.+.|..+.+...++... .....++++++ +++++.+
T Consensus 214 ~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 345667777766666555432 23345566666 5555553
Q ss_pred -CCCcEEEEeCCC-----CceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 252 -SLGSIAISGLSS-----DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 252 -~dg~i~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
.++.|.+.|.++ .+.+..+.... ....+.++|||+++++++..
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCC
Confidence 234588888877 34555555444 67899999999999988753
No 342
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.38 E-value=0.029 Score=45.50 Aligned_cols=138 Identities=11% Similarity=0.008 Sum_probs=91.7
Q ss_pred EEEecCCCE-EE-EEcCC-eEEEEecCCceee--eeccCC-ccceeeeeccCCCeEEEe-----cCCCcEEEEEcC-Ccc
Q 022324 157 VDFDFDESK-IV-GLIGT-RICIWRRNGLRSV--FPSREG-TFMKGLCMRYFDPEAVVG-----CEDGTARVFDMY-SRK 224 (299)
Q Consensus 157 ~~~~~~~~~-l~-~~~d~-~i~v~d~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~s~-----~~d~~i~iwd~~-~~~ 224 (299)
++.+|.... ++ +-.-| ...+||..+++.. +....+ +..---+|++++..|++. ...|.|-|||.. ..+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 566664433 33 33333 5677888776522 222222 111123688888887764 345789999999 667
Q ss_pred eeeeccccCCceeEEEeCCC-CeEEEEeC------------------CCcEEEEeCCCCceEEEeec----cCCCCcEEE
Q 022324 225 CSQIIRMHCAPVTSLSLSED-QLIISGSS------------------LGSIAISGLSSDQRVATLRS----TDCTGHIIC 281 (299)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~-~~l~~~~~------------------dg~i~iwd~~~~~~~~~~~~----~~~~~~i~~ 281 (299)
.+.++..+.-....+.+.|| +.|+++.. +-+|.+.|..+|+++.+..- |.. .|+.
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l--SiRH 167 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL--SIRH 167 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc--ceee
Confidence 78888877766778888888 67666532 33677788889998877543 444 7999
Q ss_pred EEccCCCCeEEeeec
Q 022324 282 LMYPQFLHMLFFLCF 296 (299)
Q Consensus 282 ~~~s~~g~~l~s~s~ 296 (299)
++++++|..++..-+
T Consensus 168 La~~~~G~V~~a~Q~ 182 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQY 182 (305)
T ss_pred EEecCCCcEEEEEec
Confidence 999999988776544
No 343
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.38 E-value=0.04 Score=48.84 Aligned_cols=137 Identities=16% Similarity=0.105 Sum_probs=85.7
Q ss_pred cEEEEecCCceeEEEecCCCc------e----eEEEEe-cCCC---EEE-EEcCCeEEEEecCCceeeeeccCCccceee
Q 022324 133 VMRLWSLEGYKCVEEYSLPNA------A----SLVDFD-FDES---KIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGL 197 (299)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~------~----~~~~~~-~~~~---~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 197 (299)
.|.-.|.++|+.+..++.... . ...... -++. .++ ++.+|.++.+|.++++.......... .+
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~--~~ 334 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ--PM 334 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc--cc
Confidence 799999999999988763211 0 111111 2333 344 78899999999999876654432110 11
Q ss_pred eeccCCCeEEEe------------------cCCCcEEEEEcCCcceeeeccccC--------Cce--eEEEeCCCCeEEE
Q 022324 198 CMRYFDPEAVVG------------------CEDGTARVFDMYSRKCSQIIRMHC--------APV--TSLSLSEDQLIIS 249 (299)
Q Consensus 198 ~~~~~~~~l~s~------------------~~d~~i~iwd~~~~~~~~~~~~~~--------~~i--~~~~~~~~~~l~~ 249 (299)
+..+ ..++.+ ..+|.+.-.|+.+++.+.+..... .+. ..+... +..+++
T Consensus 335 ~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~ 411 (488)
T cd00216 335 AYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA-GNLVFA 411 (488)
T ss_pred ccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEec-CCeEEE
Confidence 2222 223222 246789999999999887765321 111 122222 257888
Q ss_pred EeCCCcEEEEeCCCCceEEEeeccC
Q 022324 250 GSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 250 ~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
++.||.|+.+|..+|+.+.+.+...
T Consensus 412 g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 412 GAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred ECCCCeEEEEECCCCceeeEEECCC
Confidence 8899999999999999998876543
No 344
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.37 E-value=0.015 Score=51.46 Aligned_cols=152 Identities=12% Similarity=0.049 Sum_probs=95.5
Q ss_pred ecCCEEEEEeCCCcEEEEecCCceeEEEecCCCc-------eeE--EEEecCCCEEEEEcCCeEEEEecCCceeeeeccC
Q 022324 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-------ASL--VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSRE 190 (299)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 190 (299)
+.++.++.++.++.+.-.|..+|+.+..++.... .+. +....++..++++.++.|+-+|.++++.......
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 3466788888899999999999998887764432 011 1221114444488999999999998875544332
Q ss_pred Ccc---ce-e-eeeccCCCeEEEec---------CCCcEEEEEcCCcceeeeccccCC--------------------ce
Q 022324 191 GTF---MK-G-LCMRYFDPEAVVGC---------EDGTARVFDMYSRKCSQIIRMHCA--------------------PV 236 (299)
Q Consensus 191 ~~~---~~-~-~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~--------------------~i 236 (299)
... .. + -.....+..++.++ .++.+..+|..+|+.+..+..... .+
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 211 00 0 00111123444543 367899999999998877653211 01
Q ss_pred -eEEEeCCC-CeEEEEeCCC------------------cEEEEeCCCCceEEEee
Q 022324 237 -TSLSLSED-QLIISGSSLG------------------SIAISGLSSDQRVATLR 271 (299)
Q Consensus 237 -~~~~~~~~-~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~ 271 (299)
...++.+. ..++.++.++ .|.-+|..+|+.+..++
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 12344444 6677777665 79999999999887765
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.0022 Score=56.57 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=89.4
Q ss_pred eEEEecCCEEEEEeCCCcEEEEecCCceeEEE-ecCCCceeE-EEEecCCCEEE-EEcCCeEEEEecCCce---eee--e
Q 022324 116 DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEE-YSLPNAASL-VDFDFDESKIV-GLIGTRICIWRRNGLR---SVF--P 187 (299)
Q Consensus 116 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~-~~~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~--~ 187 (299)
+|+...+.+++.|+.-|.+++|+-..++.... ..+....+. ..++++..+++ |+..|.|.++-++... ..+ .
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 34444566999999999999999887765432 223444444 78888888888 9999999999887642 122 2
Q ss_pred ccC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCc----ceeeeccccCCceeEEEeCCCCeEEE
Q 022324 188 SRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSLSLSEDQLIIS 249 (299)
Q Consensus 188 ~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~~~l~~ 249 (299)
.+. +....+++|+.++..+++|...|+|..-.+.+. ...+.+....+.|-.+.+....+|++
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVS 186 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVS 186 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHh
Confidence 222 223346789999999999999999998888762 11222223455676666554433333
No 346
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.36 E-value=0.018 Score=47.99 Aligned_cols=160 Identities=14% Similarity=0.175 Sum_probs=94.1
Q ss_pred CcEEEEecCCceeEEEecCCC--ceeEE---EEecC----CCEEE-EEc---------C-CeEEEEecCCc-----e-ee
Q 022324 132 KVMRLWSLEGYKCVEEYSLPN--AASLV---DFDFD----ESKIV-GLI---------G-TRICIWRRNGL-----R-SV 185 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~--~~~~~---~~~~~----~~~l~-~~~---------d-~~i~v~d~~~~-----~-~~ 185 (299)
..|++.|..+.+.+..+..+. .+.++ .+..+ ..+++ |+. . |.+.+|++... + ..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357888888888777666443 33332 22222 34555 544 2 88999999883 2 11
Q ss_pred --eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc-eeeecc-ccCCceeEEEeCCCCeEEEEeCCCcEEEEeC
Q 022324 186 --FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIR-MHCAPVTSLSLSEDQLIISGSSLGSIAISGL 261 (299)
Q Consensus 186 --~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~ 261 (299)
.....+. +.++.+.+.+++++. ++.|.+|++...+ ....-. .....+.++....+ ++++|.....+.++..
T Consensus 82 i~~~~~~g~---V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGP---VTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS----EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEE
T ss_pred EEEEeecCc---ceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEE
Confidence 1222333 456666677755544 5889999998777 333221 22336677766544 8889998888888754
Q ss_pred CC-CceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 262 SS-DQRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 262 ~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
+. +..+..+........++++.|-++++.++++..
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~ 192 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK 192 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC
Confidence 43 333444443333227888888866666666554
No 347
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.00049 Score=52.42 Aligned_cols=138 Identities=12% Similarity=0.005 Sum_probs=75.6
Q ss_pred EEEEEeCCCcEEEEecCCceeEE-EecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCccceeeeeccC
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVE-EYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYF 202 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 202 (299)
.+..-+.||.|.-+++..-+... .-..+..... ....+.+.++|+.+|.|++|..................+.+.-|.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~-v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQR-VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhccee-ecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 34555777888877765433211 1111111111 111233344499999999998874332222222222223344444
Q ss_pred C---CeEEEecCCCcEEEEEcCCcceeeeccccC-CceeEEEeCCC-CeEEEE--eCCCcEEEEeCC
Q 022324 203 D---PEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISG--SSLGSIAISGLS 262 (299)
Q Consensus 203 ~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~--~~dg~i~iwd~~ 262 (299)
+ ...+++..+|.|+.|+..-.+.+.....|. .++..+..... ++++.+ |.|..++.|++.
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 3 347889999999999999887776665555 33433333332 555555 556666666654
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.32 E-value=0.00097 Score=35.17 Aligned_cols=34 Identities=21% Similarity=0.485 Sum_probs=28.8
Q ss_pred eEEeeccccCeeEEEe-cCC-EEEEEeCCCcEEEEe
Q 022324 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWS 138 (299)
Q Consensus 105 ~~~~~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd 138 (299)
+..+..|...|.++.+ +++ ++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566789999999999 433 999999999999996
No 349
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.27 E-value=6.5e-05 Score=65.10 Aligned_cols=175 Identities=14% Similarity=0.172 Sum_probs=104.4
Q ss_pred cCeeEEEe---cCC-EEEEEeCCCcEEEEecCCceeE-EEe-cCC-CceeEEEEec-CCCEEEEEc-----CCeEEEEec
Q 022324 113 VGVDQCRM---KRG-LILTGVGDKVMRLWSLEGYKCV-EEY-SLP-NAASLVDFDF-DESKIVGLI-----GTRICIWRR 179 (299)
Q Consensus 113 ~~i~~~~~---~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~-~~~-~~~~~~~~~~-~~~~l~~~~-----d~~i~v~d~ 179 (299)
..+.|+++ .+. .++.|..+|.|.+-......-. ..+ ..+ ....+++|++ |.+.|+++. |..+.+||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34556654 233 8899999999999877643222 222 222 3445588877 445666444 348999999
Q ss_pred CCce------eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCC-C-CeEEEEe
Q 022324 180 NGLR------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGS 251 (299)
Q Consensus 180 ~~~~------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~ 251 (299)
.+.. ..+..........+||-.+.+.+++|.....+.++|++.... .........+..+.++| . .++++-.
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceeccc
Confidence 8752 112221111122567877777788999999999999984322 11112344566677787 4 6665555
Q ss_pred CCCcEEEEe-CCCCc-eEEEeeccCC--CCcEEEEEccCCCC
Q 022324 252 SLGSIAISG-LSSDQ-RVATLRSTDC--TGHIICLMYPQFLH 289 (299)
Q Consensus 252 ~dg~i~iwd-~~~~~-~~~~~~~~~~--~~~i~~~~~s~~g~ 289 (299)
||.|.+|| .++-+ ++..+..... ...+..++|.|...
T Consensus 216 -dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt 256 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT 256 (783)
T ss_pred -cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc
Confidence 99999999 44332 2333322222 01488899998643
No 350
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00099 Score=54.79 Aligned_cols=69 Identities=12% Similarity=0.150 Sum_probs=58.8
Q ss_pred eeeeccCCCe-EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeEEEEeCCCcEEEEeCCCCc
Q 022324 196 GLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ 265 (299)
Q Consensus 196 ~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 265 (299)
-+++++.... +..++-+.+|++.|+++...+..+..+ ..+++++|+-+ .++.+|-.+|.|.|||++..+
T Consensus 198 dlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 198 DLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred hhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 3577777774 778899999999999999888888776 77999999976 788888899999999998754
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.26 E-value=0.097 Score=45.25 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=39.3
Q ss_pred cEEEEecCCceeEEEecCC-CceeEEEEecCCCEEEEEcCCeEEEEecCCce
Q 022324 133 VMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (299)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~ 183 (299)
.|.+|+.. |+.+.++... +..+.+.|+.+..+++...||.+++||+.+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~ 112 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF 112 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce
Confidence 58999865 7777776644 45666999998888889999999999997554
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.00061 Score=61.27 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=76.0
Q ss_pred ceeeeeccCCCeEEEec----CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEE
Q 022324 194 MKGLCMRYFDPEAVVGC----EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA 268 (299)
Q Consensus 194 ~~~~~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 268 (299)
..+.+|+|..+.++.++ ..|.|.|| .++|++-... ...-.+++++|+|. -.|+.|-.-|.+.+|...+.+.-.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~V-t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDV-TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccc-ccceehhhhccChHHHHHhhccccceeEEEecCCceeee
Confidence 34668999999977654 45778887 4567755444 23344678999999 788999999999999988776555
Q ss_pred EeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 269 TLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 269 ~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
....|.. +|..+.|||+|..|+++.--
T Consensus 96 v~~th~a--~i~~l~wS~~G~~l~t~d~~ 122 (1416)
T KOG3617|consen 96 VVETHPA--PIQGLDWSHDGTVLMTLDNP 122 (1416)
T ss_pred eccCCCC--CceeEEecCCCCeEEEcCCC
Confidence 5556666 99999999999999987543
No 353
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.25 E-value=8.2e-05 Score=64.49 Aligned_cols=154 Identities=15% Similarity=0.226 Sum_probs=95.1
Q ss_pred eccccCeeEEEec--CC-EEEEEe----CCCcEEEEecCCc--eeEEE--ecC--CCceeEEEEecCCCEEE-EEcCCeE
Q 022324 109 KAHSVGVDQCRMK--RG-LILTGV----GDKVMRLWSLEGY--KCVEE--YSL--PNAASLVDFDFDESKIV-GLIGTRI 174 (299)
Q Consensus 109 ~~h~~~i~~~~~~--~~-~l~s~~----~dg~i~iwd~~~~--~~~~~--~~~--~~~~~~~~~~~~~~~l~-~~~d~~i 174 (299)
.+|..+.++++|. |. .||.|- .|..+.|||+.++ .+... +.. .....+++|..+.+++. |.....+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 4667778888882 22 666663 3568999999876 22221 221 12333578887777777 8888899
Q ss_pred EEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEE-cCCcc-eeeeccccC----CceeEEEeCCC--Ce
Q 022324 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD-MYSRK-CSQIIRMHC----APVTSLSLSED--QL 246 (299)
Q Consensus 175 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~-~~~~~~~~~----~~i~~~~~~~~--~~ 246 (299)
.++|++................+.+.|..+..++...||.|.+|| .+.-+ ++..+.... ..+..++|+|- ..
T Consensus 179 ~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 179 HIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 999998543211111111112346777554445555699999999 43322 233332222 24899999997 56
Q ss_pred EEEEeC-CCcEEEEeCC
Q 022324 247 IISGSS-LGSIAISGLS 262 (299)
Q Consensus 247 l~~~~~-dg~i~iwd~~ 262 (299)
+++.+. .++|+++|+.
T Consensus 259 la~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhhccCcceEEEeccc
Confidence 777775 4679999986
No 354
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.037 Score=41.92 Aligned_cols=179 Identities=12% Similarity=0.001 Sum_probs=109.7
Q ss_pred EEecCC-EEEEEeCC--CcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeee-ccC
Q 022324 118 CRMKRG-LILTGVGD--KVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFP-SRE 190 (299)
Q Consensus 118 ~~~~~~-~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~-~~~ 190 (299)
+...++ ++.+.+.- ..|++||+.+++.+.+-.... ....--...-+..+. .-.+|....||.++-+..-. ..+
T Consensus 51 L~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~ 130 (262)
T COG3823 51 LEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE 130 (262)
T ss_pred eeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC
Confidence 556566 66666544 379999999999887665442 222211122233333 66788888898876542211 112
Q ss_pred CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccc--cC---CceeEEEeCCCCeEEEEeCCCcEEEEeCCCCc
Q 022324 191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--HC---APVTSLSLSEDQLIISGSSLGSIAISGLSSDQ 265 (299)
Q Consensus 191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~---~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 265 (299)
+. ...+..++..++.++...+++.-|.++......+.. .. ..++.+.|-.+...|-.-.+..|...|..+|+
T Consensus 131 Ge---GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 131 GE---GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred Cc---ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCc
Confidence 22 246667777788887778888888877655444331 12 23444555444556666666777777888888
Q ss_pred eEEEeeccCC----------CCcEEEEEccCCC-CeEEeeecccC
Q 022324 266 RVATLRSTDC----------TGHIICLMYPQFL-HMLFFLCFLPL 299 (299)
Q Consensus 266 ~~~~~~~~~~----------~~~i~~~~~s~~g-~~l~s~s~~~~ 299 (299)
.+..+....- ....+.+++.|++ +++++|-.+|.
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~ 252 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPL 252 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCce
Confidence 7666532210 1267889999976 88889887763
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.19 E-value=0.046 Score=47.46 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=85.4
Q ss_pred eccccCeeEEEe-cCCEEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEE-ecCCce-ee
Q 022324 109 KAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIW-RRNGLR-SV 185 (299)
Q Consensus 109 ~~h~~~i~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~-d~~~~~-~~ 185 (299)
....-....+.+ |++.++....||...++.......... ......+|.+.+++.+-..+++|.++ ++.... ..
T Consensus 29 g~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT--
T ss_pred CCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCccccceE
Confidence 334445667777 666444447788888888554443322 23445888886665556668889996 332221 12
Q ss_pred eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022324 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 264 (299)
+.... ....+.. |..|+..+ ++.|.+||..+++.+..+... +|..+.|+++ ++++..+.+ .+.|++....
T Consensus 105 i~~~~-~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 105 IKLPF-SVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp ---SS--EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EcCCc-ccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 22211 1121222 55555554 448999999999999998543 3899999999 888777754 6888876433
Q ss_pred -----------ceEEEeeccCCCCcEEEEEccCC
Q 022324 265 -----------QRVATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 265 -----------~~~~~~~~~~~~~~i~~~~~s~~ 287 (299)
..+..+..-.. .|.+.+|..+
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~~~--~IkSg~W~~d 207 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEISE--RIKSGCWVED 207 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE-S----SEEEEETT
T ss_pred hcccccccCchhceEEEEEecc--eeEEEEEEcC
Confidence 03333333133 6888888765
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.11 E-value=0.16 Score=44.00 Aligned_cols=167 Identities=11% Similarity=0.042 Sum_probs=87.8
Q ss_pred cCeeEEEec-CCEEEEEeCCCcEEEEecCCceeEEEecCC-----CceeEE-----EEecCCCEEEEEcCCeEEEEecCC
Q 022324 113 VGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-----NAASLV-----DFDFDESKIVGLIGTRICIWRRNG 181 (299)
Q Consensus 113 ~~i~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~l~~~~d~~i~v~d~~~ 181 (299)
+.|.++.|. ++.|+.-..||.++++|+. |+. .+... ..+... .+..+| .++-+.++.+++.+-..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvLt~~~~~~~v~n~~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNG-IVVLTGNNRFYVVNNID 156 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCCCC-EEEECCCCeEEEEeCcc
Confidence 789999994 4488899999999999986 333 22211 111111 122233 33344555555443222
Q ss_pred -cee--eeeccCCccc---------eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEE
Q 022324 182 -LRS--VFPSREGTFM---------KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII 248 (299)
Q Consensus 182 -~~~--~~~~~~~~~~---------~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (299)
+.. ......+... .+..+..+....+....++.+.+.+-...+. + ...+++..|++||+ +++|
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~~~~~i~~iavSpng~~iA 232 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-DSDGPIIKIAVSPNGKFIA 232 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-cCCCCeEEEEECCCCCEEE
Confidence 211 0100000000 0001111122222233334444333221111 2 12468999999999 9999
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCC
Q 022324 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFL 288 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g 288 (299)
.-..+|.+.+.+..-.+.+..+...... ....|.|.-+.
T Consensus 233 l~t~~g~l~v~ssDf~~~~~e~~~~~~~-~p~~~~WCG~d 271 (410)
T PF04841_consen 233 LFTDSGNLWVVSSDFSEKLCEFDTDSKS-PPKQMAWCGND 271 (410)
T ss_pred EEECCCCEEEEECcccceeEEeecCcCC-CCcEEEEECCC
Confidence 9999999999987666666666655322 56677776544
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.1 Score=44.62 Aligned_cols=159 Identities=11% Similarity=0.056 Sum_probs=104.1
Q ss_pred cEEEEecCCceeEEEecCC-CceeEEEEecCCCEEE--EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEe
Q 022324 133 VMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG 209 (299)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 209 (299)
.+...+............. .....+++++.+..+. ...++.|.+.|..+.........+.....+++.++++.++.+
T Consensus 54 ~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~ 133 (381)
T COG3391 54 DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVA 133 (381)
T ss_pred eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEE
Confidence 5555555433322222322 2233478888888666 444689999997766544433333344457899999886655
Q ss_pred cC---CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-C-eEEEEeCCCcEEEEeCCCCceEE-E----eeccCCCCcE
Q 022324 210 CE---DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVA-T----LRSTDCTGHI 279 (299)
Q Consensus 210 ~~---d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~-~----~~~~~~~~~i 279 (299)
.. ++.+.+.|..+.+.+........+ ..++++|+ + .+++-..++.|.+.|.......+ . ..... ..
T Consensus 134 n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~---~P 209 (381)
T COG3391 134 NAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT---GP 209 (381)
T ss_pred ecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC---CC
Confidence 44 789999999998888875443344 89999998 6 45555579999999987665553 1 21122 45
Q ss_pred EEEEccCCCCeEEeee
Q 022324 280 ICLMYPQFLHMLFFLC 295 (299)
Q Consensus 280 ~~~~~s~~g~~l~s~s 295 (299)
..+.++|+|.++.+.-
T Consensus 210 ~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 210 AGIAVDPDGNRVYVAN 225 (381)
T ss_pred ceEEECCCCCEEEEEe
Confidence 7789999999776544
No 358
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.01 Score=50.93 Aligned_cols=130 Identities=14% Similarity=0.066 Sum_probs=80.4
Q ss_pred cCCCEEE--EEcCCeEEEEecCCceeee--eccCCccceeeeeccCCCe-------EEEecCCCcEEEEEcCCcce--ee
Q 022324 161 FDESKIV--GLIGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPE-------AVVGCEDGTARVFDMYSRKC--SQ 227 (299)
Q Consensus 161 ~~~~~l~--~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------l~s~~~d~~i~iwd~~~~~~--~~ 227 (299)
.+.++|+ +.....++-.|++.++.+- ..... .....+.++... -+.|-.++.|.-||++-... +.
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 3444555 4555677777887775332 22222 112344444322 35577788999999984322 11
Q ss_pred eccc----cCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEe-eccCCCCcEEEEEccCCCCeEEeee
Q 022324 228 IIRM----HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL-RSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 228 ~~~~----~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
..+. ......|.+-..+.++++||.+|.|++||. .+..-++. .+-.. +|..+..+.+|+++++.+
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~--~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGD--AIKHVDVTADGKWILATC 490 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCC--ceeeEEeeccCcEEEEec
Confidence 1111 223455665555589999999999999997 55544444 34444 999999999999887654
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.02 E-value=0.051 Score=36.89 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=53.9
Q ss_pred eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc
Q 022324 205 EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY 284 (299)
Q Consensus 205 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 284 (299)
.|++|+.|..|++|+-. +.+.++.. .+.|+++.-.....++.+-.+|+|-+|+- .+.+...+... .+.++++
T Consensus 17 eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~---~~~~~~~ 88 (111)
T PF14783_consen 17 ELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKN---QVTSMAF 88 (111)
T ss_pred eEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCC---CeEEEEE
Confidence 39999999999999865 66777744 56688888777778999999999999985 44455555444 3555543
No 360
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0049 Score=53.79 Aligned_cols=93 Identities=18% Similarity=0.133 Sum_probs=70.2
Q ss_pred CCceeEEEEecCCCEEE-EEcCCeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeee
Q 022324 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (299)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 228 (299)
+..+..+.|+|.-.++| +..+|.+.++.++-.+ ..+..+........||.++|+.++.|-.||+|++.|..++..+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 34455699999999999 9999999888887333 223323334444789999999999999999999999999988776
Q ss_pred cc-ccCCceeEEEeCC
Q 022324 229 IR-MHCAPVTSLSLSE 243 (299)
Q Consensus 229 ~~-~~~~~i~~~~~~~ 243 (299)
+. .....|.++.|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 32 3456677777753
No 361
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.87 E-value=0.004 Score=35.23 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=29.5
Q ss_pred CCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceE
Q 022324 233 CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267 (299)
Q Consensus 233 ~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 267 (299)
...|..++|+|. .++|.++.+|.|.++.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999 99999999999999999 55543
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.84 E-value=0.22 Score=44.54 Aligned_cols=62 Identities=10% Similarity=0.096 Sum_probs=43.1
Q ss_pred CcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022324 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
+.+.-+|+.+++.+...........+.....+.+++.++.||.++.+|.++|+.+..++...
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 56888899999888766422211222212233567778889999999999999998887654
No 363
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.66 E-value=0.059 Score=50.99 Aligned_cols=140 Identities=11% Similarity=-0.027 Sum_probs=87.8
Q ss_pred CceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEc----CC----
Q 022324 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM----YS---- 222 (299)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~----~~---- 222 (299)
..++.+.|..+.+.++ +..+|.|.+-|..+.....-+.......+.+|+|+.+.++..+..+++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 4566788888887777 99999999999888764444433333446799999999776666666554321 11
Q ss_pred ---------------cceeeeccc---------------------cCCceeEEEeCCC-CeEEEE-----eCCCcEEEEe
Q 022324 223 ---------------RKCSQIIRM---------------------HCAPVTSLSLSED-QLIISG-----SSLGSIAISG 260 (299)
Q Consensus 223 ---------------~~~~~~~~~---------------------~~~~i~~~~~~~~-~~l~~~-----~~dg~i~iwd 260 (299)
|+....|.+ ..+.=+++.|--| +++|+. .....|++||
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 111111111 0111234788777 788873 3337899999
Q ss_pred CCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 261 LSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
.+ |.+-.+-....+ .-.+++|-|.|..+++-
T Consensus 229 rE-g~Lns~se~~~~--l~~~LsWkPsgs~iA~i 259 (1265)
T KOG1920|consen 229 RE-GALNSTSEPVEG--LQHSLSWKPSGSLIAAI 259 (1265)
T ss_pred cc-chhhcccCcccc--cccceeecCCCCeEeee
Confidence 86 554333333333 55778999998888764
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.57 E-value=0.34 Score=40.03 Aligned_cols=167 Identities=10% Similarity=-0.001 Sum_probs=95.2
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEec---CCC---ceeEEEEecCCCEEEEEcC------------CeEEEEecCCceee
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYS---LPN---AASLVDFDFDESKIVGLIG------------TRICIWRRNGLRSV 185 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~~~~~~~~~~l~~~~d------------~~i~v~d~~~~~~~ 185 (299)
.|+++... +.+++.+++..+..+. ... ......+.|+|.+.+++.. |.++.+|..+....
T Consensus 79 ~Lv~~~~g--~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~ 156 (307)
T COG3386 79 RLIACEHG--VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR 156 (307)
T ss_pred eEEEEccc--cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE
Confidence 56555443 3445655555422221 111 1122788899988874433 34555564333222
Q ss_pred eeccCCccceeeeeccCCCeEEEec-CCCcEEEEEcCC--cc----e-eeeccccCCceeEEEeCCC-CeEEEEeCCC-c
Q 022324 186 FPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYS--RK----C-SQIIRMHCAPVTSLSLSED-QLIISGSSLG-S 255 (299)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~--~~----~-~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg-~ 255 (299)
.....-.....+||+|+++.++.+. ..+.|.-|++.. +. . ...+....+..-.++...+ .+.+++..+| .
T Consensus 157 l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~ 236 (307)
T COG3386 157 LLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR 236 (307)
T ss_pred eecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce
Confidence 1111112233579999998866554 457888887752 11 1 1122233455566777766 5554444444 8
Q ss_pred EEEEeCCCCceEEEeeccCCCCcEEEEEcc-CCCCeEEeee
Q 022324 256 IAISGLSSDQRVATLRSTDCTGHIICLMYP-QFLHMLFFLC 295 (299)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~s~s 295 (299)
|.+|+.. |+++..+..+.. .+++++|- |+.+.|+..+
T Consensus 237 v~~~~pd-G~l~~~i~lP~~--~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 237 VVRFNPD-GKLLGEIKLPVK--RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EEEECCC-CcEEEEEECCCC--CCccceEeCCCcCEEEEEe
Confidence 9999997 999999988865 78888884 4455555443
No 365
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.54 E-value=0.26 Score=38.28 Aligned_cols=126 Identities=10% Similarity=0.118 Sum_probs=76.1
Q ss_pred EEEecCCCEEEEEc----------CCeEEEEecCCceeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEE--cCCc
Q 022324 157 VDFDFDESKIVGLI----------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFD--MYSR 223 (299)
Q Consensus 157 ~~~~~~~~~l~~~~----------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd--~~~~ 223 (299)
-..+|+|++.+|.. .|.++.|-.......+...-+ +...++|..+.+. .++-+.+-.|.-|| ..+|
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~-IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG 192 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVG-ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG 192 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhcc-CCccccccccCcEEEEEccCceEEeeeecCCCcc
Confidence 56689999866433 235666655443222221111 1223567655444 44555566676676 5544
Q ss_pred ce-----eeeccc----cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEcc
Q 022324 224 KC-----SQIIRM----HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYP 285 (299)
Q Consensus 224 ~~-----~~~~~~----~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s 285 (299)
.. +..++. .....-.++...+ .+.++.-..++|...|..+|+.+.+++-... .|++++|-
T Consensus 193 ~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~--qitsccFg 262 (310)
T KOG4499|consen 193 DLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTP--QITSCCFG 262 (310)
T ss_pred cccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCC--ceEEEEec
Confidence 32 222211 1112234455555 7777888889999999999999999998877 89999995
No 366
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.53 E-value=0.14 Score=43.45 Aligned_cols=53 Identities=8% Similarity=-0.021 Sum_probs=40.2
Q ss_pred CCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCce
Q 022324 131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (299)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~ 183 (299)
.+.+.++|+++++...............|+|+++.++...++.|++.+..++.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~ 74 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSE
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCC
Confidence 45788999999876654444445556999999999998889999999987654
No 367
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.30 E-value=0.00078 Score=57.00 Aligned_cols=139 Identities=12% Similarity=0.146 Sum_probs=99.6
Q ss_pred EEecCC-EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEE--EEcCCeEEEEecCCce-eeeeccCCcc
Q 022324 118 CRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLR-SVFPSREGTF 193 (299)
Q Consensus 118 ~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~~i~v~d~~~~~-~~~~~~~~~~ 193 (299)
...+++ -++.++.+..+..||-. ++.......+...+.++|+.++..++ +-..+.+++||+.+.. ..+.....+.
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s 119 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSS 119 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcch
Confidence 333544 68888889999999854 55555555666677799988888765 7788999999998763 1222222222
Q ss_pred ceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEE
Q 022324 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIA 257 (299)
Q Consensus 194 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~ 257 (299)
.....|++..+.++.+...+.+.+++-.+.+.+...-.|...++++++.++.+.+.++.|..+.
T Consensus 120 ~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 120 KSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred HHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 2245788888888889899999999998877766664488889999999886666666655443
No 368
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=0.01 Score=54.13 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=63.6
Q ss_pred ceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeeecc
Q 022324 224 KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~ 297 (299)
+....|..+....+|++|+.+ ++|+.|+..|.|+++++.+|.......+|.. +|+.+.-+.+|..+++.+-+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S--avT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS--AVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc--ccccccccCCcceeeeeccc
Confidence 344556677888999999988 9999999999999999999999999999998 99999999999988877654
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.21 E-value=0.83 Score=41.02 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=92.5
Q ss_pred cCCEEEEEeCCCcEEEEecCCceeEEEecCCCc--eeE----------EEEecCCCEEEEEcCCeEEEEecCCceeeeec
Q 022324 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA--ASL----------VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~ 188 (299)
.++.++.++.++.|.-.|..+|+.+..+..... ... +++. +++.++++.++.+.-+|..+++.....
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 466888888899999999999999887764321 110 1221 234444888999999999988765443
Q ss_pred cCCccc--eeeeecc--CCCeEEEec------CCCcEEEEEcCCcceeeeccccCC------------------------
Q 022324 189 REGTFM--KGLCMRY--FDPEAVVGC------EDGTARVFDMYSRKCSQIIRMHCA------------------------ 234 (299)
Q Consensus 189 ~~~~~~--~~~~~~~--~~~~l~s~~------~d~~i~iwd~~~~~~~~~~~~~~~------------------------ 234 (299)
...... ..+.-.| .+..++.+. .+|.|..+|.++|+.+..+..-..
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 221100 0000011 133455543 268899999999998876542110
Q ss_pred -------ce-eEEEeCCC-CeEEEEeCC-----C-----------cEEEEeCCCCceEEEeecc
Q 022324 235 -------PV-TSLSLSED-QLIISGSSL-----G-----------SIAISGLSSDQRVATLRST 273 (299)
Q Consensus 235 -------~i-~~~~~~~~-~~l~~~~~d-----g-----------~i~iwd~~~~~~~~~~~~~ 273 (299)
.+ ..+++.|+ .++..+..+ + +|.-.|+++|+..-.++..
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~ 290 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT 290 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC
Confidence 11 13466676 555555422 2 6777888999987777643
No 370
>PHA02713 hypothetical protein; Provisional
Probab=96.06 E-value=0.52 Score=42.63 Aligned_cols=172 Identities=9% Similarity=0.019 Sum_probs=81.7
Q ss_pred CC-EEEEEeCC------CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCC-----eEEEEecCCceee-e
Q 022324 122 RG-LILTGVGD------KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGT-----RICIWRRNGLRSV-F 186 (299)
Q Consensus 122 ~~-~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~-----~i~v~d~~~~~~~-~ 186 (299)
++ ..+.||.+ ..+..||..+.+....-.-+..... ....-+++..+ |+.++ ++..||..+..-. .
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 44 55666643 3467788777654321111111111 22233555555 66543 5888998876411 1
Q ss_pred eccCCccceeeeeccCCCeEEEecCCC-----------------------cEEEEEcCCc--ceeeeccccCCceeEEEe
Q 022324 187 PSREGTFMKGLCMRYFDPEAVVGCEDG-----------------------TARVFDMYSR--KCSQIIRMHCAPVTSLSL 241 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~s~~~d~-----------------------~i~iwd~~~~--~~~~~~~~~~~~i~~~~~ 241 (299)
...........+...++...+.|+.++ .+..||+.+. +.+..+..... -.+++.
T Consensus 383 ~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~~ 461 (557)
T PHA02713 383 PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVVS 461 (557)
T ss_pred CCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-cCcEEE
Confidence 111111111112233444456666542 4667887654 22333321111 123334
Q ss_pred CCCCeEEEEeCC------CcEEEEeCCC-Cc--eEEEeeccCCCCcEEEEEccCCCCeEEeeeccc
Q 022324 242 SEDQLIISGSSL------GSIAISGLSS-DQ--RVATLRSTDCTGHIICLMYPQFLHMLFFLCFLP 298 (299)
Q Consensus 242 ~~~~~l~~~~~d------g~i~iwd~~~-~~--~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~~~ 298 (299)
..+++.+.|+.+ ..+..||..+ .+ .+..+..... ....+.+ +|+..+.|++.+
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~--~~~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS--ALHTILH--DNTIMMLHCYES 523 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc--cceeEEE--CCEEEEEeeecc
Confidence 445666677654 2467899887 43 2333332222 2222222 788888887643
No 371
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.00 E-value=0.61 Score=37.26 Aligned_cols=130 Identities=14% Similarity=0.046 Sum_probs=75.0
Q ss_pred eeEEEecCCCceeE--EEEecCCCEEE-EEcCC--eEEEEecCCceeeeeccCCccceeeeeccCCCeEE-EecCCCcEE
Q 022324 143 KCVEEYSLPNAASL--VDFDFDESKIV-GLIGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTAR 216 (299)
Q Consensus 143 ~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~ 216 (299)
+.+.++.+...... +.|..++.++- .+.-| .|+.+|+.+++......-......-.+...++.+. -.-.++...
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 45666766655555 77766666555 44444 89999999886332222111111223333345533 345688899
Q ss_pred EEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022324 217 VFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 217 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
+||..+.+.+.++.- ...=+.++. .++.|+.......|+++|..+.+...++....
T Consensus 114 ~yd~~tl~~~~~~~y-~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~ 169 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPY-PGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD 169 (264)
T ss_dssp EEETTTTEEEEEEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE
T ss_pred EEccccceEEEEEec-CCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEE
Confidence 999999998888853 445677774 33456666667789999998887777765543
No 372
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.97 E-value=0.033 Score=50.77 Aligned_cols=104 Identities=17% Similarity=0.245 Sum_probs=78.8
Q ss_pred EEEecCCCEEE-EEc----CCeEEEEecCC-ceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc
Q 022324 157 VDFDFDESKIV-GLI----GTRICIWRRNG-LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR 230 (299)
Q Consensus 157 ~~~~~~~~~l~-~~~----d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 230 (299)
..|+|...+++ ++. .|+|.||--.+ ++.-...+ -+.. .+||+|..-.|+.|-.-|.+.+|...+.+......
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P-~hat-SLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYP-VHAT-SLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccc-eehh-hhccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 78888888876 433 57888875433 22111111 1111 36899888779999999999999998877766666
Q ss_pred ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022324 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~ 262 (299)
.|..+|..+.|+++ ..++++..-|.+.+|...
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 89999999999999 999999999999999875
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.96 E-value=0.22 Score=46.23 Aligned_cols=136 Identities=18% Similarity=0.255 Sum_probs=90.4
Q ss_pred EEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecC--------CCEEEEEcCCeEEEEecCCce-eeee--ccC-Cc
Q 022324 125 ILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD--------ESKIVGLIGTRICIWRRNGLR-SVFP--SRE-GT 192 (299)
Q Consensus 125 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~d~~i~v~d~~~~~-~~~~--~~~-~~ 192 (299)
|........|+-.|++.|+.+..+..+.......+.|+ ...++|-.+..+..||.+-.. .+.. .+. ..
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 44445567899999999999999998876544555553 234669999999999998542 1111 111 01
Q ss_pred cceeeeeccC-CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeC
Q 022324 193 FMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (299)
Q Consensus 193 ~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~ 261 (299)
.....|+... ..++|.|+.+|.|++||--.....-.+.+-..+|..|..+.| +++++.+ +..|.+++.
T Consensus 577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1111233333 445999999999999994322223344466899999999999 7666555 566777775
No 374
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.94 E-value=0.24 Score=42.95 Aligned_cols=137 Identities=12% Similarity=0.155 Sum_probs=90.7
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCC--------CEEEEEcCCeEEEEecCCce--eee---eccC
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE--------SKIVGLIGTRICIWRRNGLR--SVF---PSRE 190 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~d~~i~v~d~~~~~--~~~---~~~~ 190 (299)
.+..|+....++-.|++-|+.+..+..+..+ .+.+.|+. ..|+|-++..|.-.|.+-.. ... +...
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 4556666777888899999999999988766 66776643 45778888888777876332 111 1111
Q ss_pred CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCC
Q 022324 191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 191 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~ 262 (299)
+......+....+.++++++..|-|++||.--......+.+-...|..+..+.+ +++++.+ ...|-+-|++
T Consensus 561 tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 561 TKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 111112244455677999999999999996543334445566778999998877 6655554 4567777764
No 375
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.93 E-value=0.89 Score=39.22 Aligned_cols=137 Identities=14% Similarity=0.174 Sum_probs=84.6
Q ss_pred EEEEEeCCCcEEEEecCCce-----eEEEecCCCceeEEEEec-----CCCEEEEEcCCeEEEEecCCce----------
Q 022324 124 LILTGVGDKVMRLWSLEGYK-----CVEEYSLPNAASLVDFDF-----DESKIVGLIGTRICIWRRNGLR---------- 183 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~l~~~~d~~i~v~d~~~~~---------- 183 (299)
.++.||..|.++|++..... .+.+.+...++..+...+ +...|+.-.-..+.+|.+....
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~ 118 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQ 118 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEE
Confidence 89999999999999986432 444555556666655432 3344557777788888873211
Q ss_pred --eeeeccCCccceeeeeccCC-----CeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCc
Q 022324 184 --SVFPSREGTFMKGLCMRYFD-----PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (299)
Q Consensus 184 --~~~~~~~~~~~~~~~~~~~~-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (299)
..+..+-.....-+++-+.+ +.++.-+.||.+.+|+-+.......+.. ---...+.|.+. +.+++++.+..
T Consensus 119 L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~ 197 (418)
T PF14727_consen 119 LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWT 197 (418)
T ss_pred EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCcee
Confidence 12222222222233444443 3388889999999999875443333322 222344667777 77888888888
Q ss_pred EEEEeC
Q 022324 256 IAISGL 261 (299)
Q Consensus 256 i~iwd~ 261 (299)
|..|..
T Consensus 198 l~~Yky 203 (418)
T PF14727_consen 198 LECYKY 203 (418)
T ss_pred EEEecH
Confidence 888765
No 376
>PHA02713 hypothetical protein; Provisional
Probab=95.89 E-value=0.23 Score=44.81 Aligned_cols=141 Identities=10% Similarity=-0.010 Sum_probs=72.1
Q ss_pred EEEEEeCCC-----cEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC-----------------------Ce
Q 022324 124 LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG-----------------------TR 173 (299)
Q Consensus 124 ~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d-----------------------~~ 173 (299)
..+.||.++ ++..||..+.+....-..+.+... ....-+++..+ |+.+ ..
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNK 433 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccce
Confidence 455566553 477888877654332222222111 11223555555 5543 25
Q ss_pred EEEEecCCceee-eecc-CCccceeeeeccCCCeEEEecCC------CcEEEEEcCC---cceeeeccccCCceeEEEeC
Q 022324 174 ICIWRRNGLRSV-FPSR-EGTFMKGLCMRYFDPEAVVGCED------GTARVFDMYS---RKCSQIIRMHCAPVTSLSLS 242 (299)
Q Consensus 174 i~v~d~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~---~~~~~~~~~~~~~i~~~~~~ 242 (299)
+..||..+.+-. .... ..... .-+...++...+.|+.+ ..+..||+.+ .+.+..+..... ...++..
T Consensus 434 ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~~ 511 (557)
T PHA02713 434 VIRYDTVNNIWETLPNFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTILH 511 (557)
T ss_pred EEEECCCCCeEeecCCCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEEE
Confidence 778888876411 1111 11111 11222334445556643 2367899876 334444433222 2334444
Q ss_pred CCCeEEEEeCCC--cEEEEeCCCCce
Q 022324 243 EDQLIISGSSLG--SIAISGLSSDQR 266 (299)
Q Consensus 243 ~~~~l~~~~~dg--~i~iwd~~~~~~ 266 (299)
.+++.++|+.++ ++..||..+++-
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccc
Confidence 557888999888 778888877653
No 377
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=95.89 E-value=0.009 Score=34.02 Aligned_cols=44 Identities=30% Similarity=0.472 Sum_probs=36.7
Q ss_pred hhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHH
Q 022324 23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQL 66 (299)
Q Consensus 23 ~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~ 66 (299)
.+..+|.+...+|+.+++..+...+..+|+.|+.++.+...|..
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~ 45 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKK 45 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHH
Confidence 46679999999999999999999999999999999987777754
No 378
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.88 E-value=0.36 Score=37.55 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=64.4
Q ss_pred EEEecCCCEEE--EEcCCeEEEEe--cCCce-----eeeeccC-----CccceeeeeccCCCeEEEecCCCcEEEEEcCC
Q 022324 157 VDFDFDESKIV--GLIGTRICIWR--RNGLR-----SVFPSRE-----GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS 222 (299)
Q Consensus 157 ~~~~~~~~~l~--~~~d~~i~v~d--~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 222 (299)
++|+.+.+.+. -+.+-+|.-|| ..++. .++.... ......+++...+...++.-..++|...|+.+
T Consensus 163 l~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~t 242 (310)
T KOG4499|consen 163 LAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTT 242 (310)
T ss_pred ccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCC
Confidence 78887777766 55566787777 44432 2332222 22223456666677777788889999999999
Q ss_pred cceeeeccccCCceeEEEeC-CC-CeEEE
Q 022324 223 RKCSQIIRMHCAPVTSLSLS-ED-QLIIS 249 (299)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~-~~-~~l~~ 249 (299)
|+.+.++.-....|++++|- ++ ..+.+
T Consensus 243 GK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 243 GKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred CcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 99999998888889999997 54 44333
No 379
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.87 E-value=0.11 Score=40.57 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=49.2
Q ss_pred CeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEe---------------cCCCceeEEEEecCCCEEEEEcCCeEEEEe
Q 022324 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEY---------------SLPNAASLVDFDFDESKIVGLIGTRICIWR 178 (299)
Q Consensus 114 ~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d 178 (299)
++..+...+.+|+.-+.+|.+++||+.+++.+..- .....+..+.++.+|.-++...+|..+.|+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 44445556669999999999999999998765432 112333447778888877777778888888
Q ss_pred cCCc
Q 022324 179 RNGL 182 (299)
Q Consensus 179 ~~~~ 182 (299)
..-.
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 7544
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.81 E-value=0.029 Score=43.08 Aligned_cols=126 Identities=12% Similarity=0.015 Sum_probs=74.3
Q ss_pred EEEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceee-eccccCCceeEEEeC-CC
Q 022324 167 VGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLS-ED 244 (299)
Q Consensus 167 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~-~~ 244 (299)
+.+.++.|.-++++..+.......-... ...+.-.+..++.|+.+|.|.+|.....-.+. .+......|-++.-. .+
T Consensus 35 ~~sa~~~v~~~~~~k~k~s~rse~~~~e-~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~ 113 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKESCRSERFIDE-GQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRD 113 (238)
T ss_pred cccCCcccccchhhhhhhhhhhhhhhhc-ceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccc
Confidence 3777888888887654321111100000 12233345568999999999999887322211 111222333333222 22
Q ss_pred -CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 245 -QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 245 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
.+..+++.||.|+.|++.-++.+.....|... ++..+..+..+++++.+
T Consensus 114 ~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~~e~~ivv~sd~~i~~a 163 (238)
T KOG2444|consen 114 SSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-SGEELIVVGSDEFLKIA 163 (238)
T ss_pred cceeEEeccCCceeeeccccCceeeeeccccCC-CcceeEEecCCceEEee
Confidence 57888999999999999888887777666622 56666666666666654
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.70 E-value=0.064 Score=30.33 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=26.4
Q ss_pred CCCceeEEEEecCCCEEE-EEcCCeEEEEecC
Q 022324 150 LPNAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
....+..++|+|...+++ ++.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 344566799999999999 9999999999984
No 382
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.69 E-value=1.3 Score=38.48 Aligned_cols=108 Identities=9% Similarity=0.000 Sum_probs=65.3
Q ss_pred EEEecCCCEEE-E-EcCC----eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecC-----------CCcEEEEE
Q 022324 157 VDFDFDESKIV-G-LIGT----RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-----------DGTARVFD 219 (299)
Q Consensus 157 ~~~~~~~~~l~-~-~~d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-----------d~~i~iwd 219 (299)
..++|++++++ + +.+| .++++|+.+++..-..........++|..++..++-... ...|..|.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 77899999988 3 4444 699999999865443333332222688888777544322 22378888
Q ss_pred cCCccee--eeccccCC-c-eeEEEeCCC-CeEEEEe-CC---CcEEEEeCCCC
Q 022324 220 MYSRKCS--QIIRMHCA-P-VTSLSLSED-QLIISGS-SL---GSIAISGLSSD 264 (299)
Q Consensus 220 ~~~~~~~--~~~~~~~~-~-i~~~~~~~~-~~l~~~~-~d---g~i~iwd~~~~ 264 (299)
+.+.... ..+..... . ...+..+++ ++++..+ .. ..+.+.|+..+
T Consensus 209 ~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 209 LGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp TTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 8765432 33332222 2 567888888 7655433 32 34788888764
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.65 E-value=1.2 Score=40.40 Aligned_cols=148 Identities=9% Similarity=0.029 Sum_probs=79.2
Q ss_pred EEecCC-EEEEEeCC------CcEEEEecCCceeEEEecCCCceeEEEE-ecCCCEEE-EEcCC-----eEEEEecCCce
Q 022324 118 CRMKRG-LILTGVGD------KVMRLWSLEGYKCVEEYSLPNAASLVDF-DFDESKIV-GLIGT-----RICIWRRNGLR 183 (299)
Q Consensus 118 ~~~~~~-~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~-~~~d~-----~i~v~d~~~~~ 183 (299)
+..-++ ..++|+.| .++..||..+.+....-.-......... .-+|.+.+ |+.|| ++-.||..+.+
T Consensus 328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCc
Confidence 444444 77888888 3577788877764432222222222222 22455545 88876 68888888775
Q ss_pred eeeec-cCCccceeeeeccCCCeEEEecCCC------cEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCCC
Q 022324 184 SVFPS-REGTFMKGLCMRYFDPEAVVGCEDG------TARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSLG 254 (299)
Q Consensus 184 ~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg 254 (299)
-.... ........-.....+...++||.++ .+..||..+.+ .+..+..... -..++.-.+.+.+.|+.|+
T Consensus 408 W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 408 WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred ccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-cceEEEECCEEEEECCccC
Confidence 22211 1111111212333444466777443 46788887643 3333322122 2224444567888888776
Q ss_pred c-----EEEEeCCCCce
Q 022324 255 S-----IAISGLSSDQR 266 (299)
Q Consensus 255 ~-----i~iwd~~~~~~ 266 (299)
. +..||..+.+-
T Consensus 487 ~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 487 TSALSSVERYDPETNQW 503 (571)
T ss_pred CCccceEEEEcCCCCce
Confidence 3 77788877653
No 384
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=95.58 E-value=0.018 Score=31.30 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=34.6
Q ss_pred CcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHH
Q 022324 27 LNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQ 65 (299)
Q Consensus 27 ~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~ 65 (299)
+|.+....|+.+++..+...+..+|+.|+.++....+|.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 578889999999999999999999999999998666664
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.084 Score=49.44 Aligned_cols=96 Identities=22% Similarity=0.240 Sum_probs=67.0
Q ss_pred CEEE-EEcCCeEEEEecCCcee--eeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEE
Q 022324 164 SKIV-GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (299)
Q Consensus 164 ~~l~-~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~ 240 (299)
..++ ++..|.+-..|..+... ....+.......++++.++..++.|-.+|.|.+||...++.++.+..+..+.+.+-
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 3455 88888888888876532 22222222333568888899999999999999999999999888876665555544
Q ss_pred eC---CC-CeEEEEeCCCcEEEEeC
Q 022324 241 LS---ED-QLIISGSSLGSIAISGL 261 (299)
Q Consensus 241 ~~---~~-~~l~~~~~dg~i~iwd~ 261 (299)
+. .+ ..++++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 33 33 66888877776 5543
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.33 E-value=0.055 Score=50.57 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=65.2
Q ss_pred eeccCCCeEEEecCCCcEEEEEcCCc-ce-eeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022324 198 CMRYFDPEAVVGCEDGTARVFDMYSR-KC-SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 198 ~~~~~~~~l~s~~~d~~i~iwd~~~~-~~-~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
+....+..++.|+..|.+-..|.... .. .+.. ...++|++++|+.+ .+++.|-.+|.|.+||+..++.++.+..+.
T Consensus 94 s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne-~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ 172 (1206)
T KOG2079|consen 94 SSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNE-RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHG 172 (1206)
T ss_pred eeeeeeeeEEEEcCchhhhhhhhhcccchhhcCC-ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecC
Confidence 34444455788888899888887742 11 1111 34678999999998 888899999999999999998888876655
Q ss_pred CC-CcEEEEEccCCCCeEEee
Q 022324 275 CT-GHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 275 ~~-~~i~~~~~s~~g~~l~s~ 294 (299)
.+ ..|-.+.+..++..++++
T Consensus 173 ap~t~vi~v~~t~~nS~llt~ 193 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTS 193 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEc
Confidence 41 133334444455545543
No 387
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.32 E-value=0.68 Score=38.25 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=68.0
Q ss_pred EEecC-CceeEEEecCCCce-eEEEEecCCCEEE-EE-cCCeEEEEecCC--c----e--eeeeccCCccceeeeeccCC
Q 022324 136 LWSLE-GYKCVEEYSLPNAA-SLVDFDFDESKIV-GL-IGTRICIWRRNG--L----R--SVFPSREGTFMKGLCMRYFD 203 (299)
Q Consensus 136 iwd~~-~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~-~d~~i~v~d~~~--~----~--~~~~~~~~~~~~~~~~~~~~ 203 (299)
+|-+. .+..+..+..+-.. ..++|+||++.++ +- ..+.|+-|++.. . . .............+++..++
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 44444 34444444432222 2399999998877 43 347888887752 1 1 11111112222345666667
Q ss_pred CeEEEecCCC-cEEEEEcCCcceeeeccccCCceeEEEeC-CC-C-eEEEEe
Q 022324 204 PEAVVGCEDG-TARVFDMYSRKCSQIIRMHCAPVTSLSLS-ED-Q-LIISGS 251 (299)
Q Consensus 204 ~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~i~~~~~~-~~-~-~l~~~~ 251 (299)
...+++..+| .|.+|+.+ ++.+..+......+++++|- |+ + +++++.
T Consensus 225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 6654444443 89999998 99998887665778888887 44 3 444443
No 388
>PHA03098 kelch-like protein; Provisional
Probab=95.32 E-value=1.1 Score=40.49 Aligned_cols=144 Identities=10% Similarity=0.017 Sum_probs=67.3
Q ss_pred cCCEEEEEeCCC------cEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC-----CeEEEEecCCceeee-
Q 022324 121 KRGLILTGVGDK------VMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG-----TRICIWRRNGLRSVF- 186 (299)
Q Consensus 121 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~~~~- 186 (299)
.+..++.|+.++ .+..||..+.+....-..+.+... .....+++..+ |+.+ ..+..||..+..-..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 333566666543 567888877765432221211111 12223555555 6654 357788887664111
Q ss_pred eccCCccceeeeeccCCCeEEEecCC------CcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCCC----
Q 022324 187 PSREGTFMKGLCMRYFDPEAVVGCED------GTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSLG---- 254 (299)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg---- 254 (299)
...........+....+..++.|+.+ +.+..||+.+.+ .+..+..... -.+++...+.+++.|+.++
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~ 452 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNI 452 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCC
Confidence 11111111111222334445556632 357888887543 2222211111 1223333446666666432
Q ss_pred ----cEEEEeCCCCc
Q 022324 255 ----SIAISGLSSDQ 265 (299)
Q Consensus 255 ----~i~iwd~~~~~ 265 (299)
.+.+||..+++
T Consensus 453 ~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 453 KVYNIVESYNPVTNK 467 (534)
T ss_pred cccceEEEecCCCCc
Confidence 38889987764
No 389
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.20 E-value=2.4 Score=39.86 Aligned_cols=148 Identities=11% Similarity=0.056 Sum_probs=87.8
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCcee-------------EEEEec---CCCEEEEEc----------CCeEEEE
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-------------LVDFDF---DESKIVGLI----------GTRICIW 177 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------------~~~~~~---~~~~l~~~~----------d~~i~v~ 177 (299)
.++.++.|+.+.-.|.++|+.+..+..+..+- ...-.| ++..++++. +|.|+-+
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 78889999999999999999987765322110 011111 333444532 5789999
Q ss_pred ecCCceeeeeccCC------------------ccc-eeeeeccCCCeEEEe------------------cCCCcEEEEEc
Q 022324 178 RRNGLRSVFPSREG------------------TFM-KGLCMRYFDPEAVVG------------------CEDGTARVFDM 220 (299)
Q Consensus 178 d~~~~~~~~~~~~~------------------~~~-~~~~~~~~~~~l~s~------------------~~d~~i~iwd~ 220 (299)
|.++++.......+ ... ...++.+....++.+ ...+.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 99988754432211 000 011222222222211 12355777889
Q ss_pred CCcceeeeccc-cCC---------ce-eEEEeCCC---CeEEEEeCCCcEEEEeCCCCceEEEee
Q 022324 221 YSRKCSQIIRM-HCA---------PV-TSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLR 271 (299)
Q Consensus 221 ~~~~~~~~~~~-~~~---------~i-~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (299)
++|+....++. |.+ ++ ..+....+ ..++.++.+|.+.++|.++|+.+...+
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 99999887764 211 11 12322111 379999999999999999999886653
No 390
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.01 E-value=1.8 Score=39.43 Aligned_cols=132 Identities=9% Similarity=0.025 Sum_probs=73.3
Q ss_pred eeEEEEecCCCEEE-EE------cCC--eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCC------------
Q 022324 154 ASLVDFDFDESKIV-GL------IGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED------------ 212 (299)
Q Consensus 154 ~~~~~~~~~~~~l~-~~------~d~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------------ 212 (299)
+...+++|+++.++ .. .|. .+.+++.......+.. +.....-.|++++..+++....
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 33488999999988 33 133 5666665433222211 1112234788887765554322
Q ss_pred CcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEE---EeCCCCc-eE---EEeeccCCCCcEEEEEc
Q 022324 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI---SGLSSDQ-RV---ATLRSTDCTGHIICLMY 284 (299)
Q Consensus 213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~i---wd~~~~~-~~---~~~~~~~~~~~i~~~~~ 284 (299)
+.+.+.+++.++... .....|..+.|+|| ..++... ++.|.+ -....|+ .+ ..+..... ..+.++.|
T Consensus 430 gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~~l~W 504 (591)
T PRK13616 430 GQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAVSLDW 504 (591)
T ss_pred ceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC-CccccceE
Confidence 334444444433322 22456999999999 6666554 477777 4444454 11 11222111 14688999
Q ss_pred cCCCCeEE
Q 022324 285 PQFLHMLF 292 (299)
Q Consensus 285 s~~g~~l~ 292 (299)
..++.+++
T Consensus 505 ~~~~~L~V 512 (591)
T PRK13616 505 RTGDSLVV 512 (591)
T ss_pred ecCCEEEE
Confidence 99998654
No 391
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.63 E-value=2.3 Score=36.31 Aligned_cols=135 Identities=16% Similarity=0.071 Sum_probs=68.6
Q ss_pred ceeEEEEecCCCEEEEEc------------CC-eEEEEecCCc--e----eeeeccCCccceeeeeccCCCeEEEecCCC
Q 022324 153 AASLVDFDFDESKIVGLI------------GT-RICIWRRNGL--R----SVFPSREGTFMKGLCMRYFDPEAVVGCEDG 213 (299)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~------------d~-~i~v~d~~~~--~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 213 (299)
.++.++|.++++++++.. .+ .|.+++-.+. . .++..... ....+++.+++ ++++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~-~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS-MVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC-CccceeEecCC--EEEeCCCe
Confidence 455688888888777532 22 6766654322 1 12211111 11234555555 55555443
Q ss_pred cEEEEEcCC-------ccee-eeccc----cCCceeEEEeCCC-CeEEEEeCC-------------------CcEEEEeC
Q 022324 214 TARVFDMYS-------RKCS-QIIRM----HCAPVTSLSLSED-QLIISGSSL-------------------GSIAISGL 261 (299)
Q Consensus 214 ~i~iwd~~~-------~~~~-~~~~~----~~~~i~~~~~~~~-~~l~~~~~d-------------------g~i~iwd~ 261 (299)
..++.|... .+.+ ..+.. +......+++.|| .+.++-+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333334421 1111 22322 1344778999998 655544421 34555565
Q ss_pred CCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022324 262 SSDQRVATLRSTDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 293 (299)
..++ +..+..... ....++|+|+|+++++
T Consensus 172 dg~~-~e~~a~G~r--np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 172 DGGK-LRVVAHGFQ--NPYGHSVDSWGDVFFC 200 (367)
T ss_pred CCCe-EEEEecCcC--CCccceECCCCCEEEE
Confidence 5443 233322222 5688999999988775
No 392
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.54 E-value=4.1 Score=38.58 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=93.6
Q ss_pred cEEEEecCCceeEEEecCCC--ce---eEEEEecC-CCEEE-EEc----------CCeEEEEecCCceeeeeccCCc-cc
Q 022324 133 VMRLWSLEGYKCVEEYSLPN--AA---SLVDFDFD-ESKIV-GLI----------GTRICIWRRNGLRSVFPSREGT-FM 194 (299)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~--~~---~~~~~~~~-~~~l~-~~~----------d~~i~v~d~~~~~~~~~~~~~~-~~ 194 (299)
.++++|-+|.+.+...+... .+ +++.|..| +.+++ |+. .|.|.+|...........++.. ..
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 46777877777666555332 22 22446666 44554 543 4678888776622111111111 11
Q ss_pred eeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC--CceEEEee
Q 022324 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS--DQRVATLR 271 (299)
Q Consensus 195 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~--~~~~~~~~ 271 (299)
.+.++...+..+++ +-+..|++|+..+.+.++.-..+..++..+...-. ..+++|..-+++.+...+. |.....-+
T Consensus 831 av~aL~~fngkllA-~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr 909 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLA-GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR 909 (1096)
T ss_pred ceeehhhhCCeEEE-ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeeh
Confidence 13455444444443 44678999999988777766677888888888766 7899999988887765543 33332222
Q ss_pred ccCCCCcEEEEEccCCCCeEEe
Q 022324 272 STDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 272 ~~~~~~~i~~~~~s~~g~~l~s 293 (299)
.-. +...+++.+-.+..|+.+
T Consensus 910 D~~-p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 910 DYN-PNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred hhC-ccceeeEEEecCceEEee
Confidence 211 116777777666666554
No 393
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.51 E-value=2.7 Score=35.89 Aligned_cols=150 Identities=13% Similarity=0.017 Sum_probs=88.1
Q ss_pred cCCEEEEEeCCCcEEEEecCCceeEEEecCCC--ceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCc-ccee
Q 022324 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMKG 196 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~ 196 (299)
.++.++.+..+|.|.-.|..+++.+....... .... -.+..+|+.++++.++.++.+|..++.......... ....
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 56678888999999999999998765444332 2222 222237887779999999999997665444332222 1111
Q ss_pred eeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccC---CceeEEEeCCCCeEEEEeC--CCcEEEEeCCCCceEEEe
Q 022324 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC---APVTSLSLSEDQLIISGSS--LGSIAISGLSSDQRVATL 270 (299)
Q Consensus 197 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~i~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~ 270 (299)
-.....+..++.++.++.+...|..+++.+....... ..+..-....+..+..+.. ++.+.-.|..+|+.....
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 1111223334555578899999988888876653211 1111100112234555555 566777788788776654
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.46 E-value=1.6 Score=39.73 Aligned_cols=88 Identities=13% Similarity=-0.005 Sum_probs=60.8
Q ss_pred EEecCCCcEEEEEcCCcceeeecc-ccCCceeEEEeC--CC-CeEEEEeCCCcEEEEeCC---------CCceEEEeec-
Q 022324 207 VVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLS---------SDQRVATLRS- 272 (299)
Q Consensus 207 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~--~~-~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~- 272 (299)
++-+....+.|||.+.+....+.. ...+.|.++.|. |+ +.+++.+....|.++.-. +-..++.+..
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~ 124 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDIS 124 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEee
Confidence 334445679999999877543332 457889999997 66 788888888999998642 1224444432
Q ss_pred -cCCCCcEEEEEccCCCCeEEeee
Q 022324 273 -TDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 273 -~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
+.. .+|.+..|.++|..+++++
T Consensus 125 ~~T~-h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 125 SHTP-HPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred cCCC-CCccceeEecCCeEEEEeC
Confidence 221 2899999999999887655
No 395
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=0.89 Score=41.39 Aligned_cols=53 Identities=9% Similarity=0.074 Sum_probs=40.0
Q ss_pred eCCCcEEEEecCCceeEEEecCC-CceeEEEEecCCCEEEEEcCCeEEEEecCCc
Q 022324 129 VGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGL 182 (299)
Q Consensus 129 ~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 182 (299)
+.--.|+|+++. |+.+..+... ...+.+.|+.+..+|+...+|++++|+.-..
T Consensus 61 ~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 61 SARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred ccceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchh
Confidence 344568888764 6766665543 4667799999999998999999999998654
No 396
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.22 E-value=0.72 Score=40.12 Aligned_cols=132 Identities=17% Similarity=0.098 Sum_probs=74.5
Q ss_pred EEEecCCCEEE--EEcCCeEEEEecCCceee--eeccCCccceeeeeccCCCe-------EEEecCCCcEEEEEcCCcc-
Q 022324 157 VDFDFDESKIV--GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPE-------AVVGCEDGTARVFDMYSRK- 224 (299)
Q Consensus 157 ~~~~~~~~~l~--~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------l~s~~~d~~i~iwd~~~~~- 224 (299)
+-...+.++|+ +.....++-.|+..++.+ +..+... ++.+.|.... -+.|-.+..|.-.|.+-..
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv---vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV---VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc---eeecCCchhHHhcCccceEEeecccceEEecccccCC
Confidence 33344555555 555567777777766533 2222222 3344444221 3455556666666776432
Q ss_pred eeeeccccCCceeEEEeC-----CCCeEEEEeCCCcEEEEeCCCCceEEE-eeccCCCCcEEEEEccCCCCeEEeee
Q 022324 225 CSQIIRMHCAPVTSLSLS-----EDQLIISGSSLGSIAISGLSSDQRVAT-LRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
.+... ...+..+.-.|+ ...++|+|+..|.|++||.- |...++ +.+-.. .|..+..+.+|+++++.|
T Consensus 550 Ki~v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~--aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 550 KIKVV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGD--AIKHIDVTANGKHILATC 622 (776)
T ss_pred ceeee-eehhccccccccccccccCceEEEecCCCceeeehhh-cchhhhcCccccc--ceeeeEeecCCcEEEEee
Confidence 22221 122223333333 23799999999999999964 433333 333344 899999999999887765
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.74 E-value=0.4 Score=26.37 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=25.7
Q ss_pred CceeEEEeCCC----CeEEEEeCCCcEEEEeCCCC
Q 022324 234 APVTSLSLSED----QLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 234 ~~i~~~~~~~~----~~l~~~~~dg~i~iwd~~~~ 264 (299)
+.|.++.|+|+ .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 35889999975 48888888999999999953
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.65 E-value=3.2 Score=37.78 Aligned_cols=141 Identities=12% Similarity=0.036 Sum_probs=73.8
Q ss_pred EEEEEeCC------CcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEEEEcC-C-----eEEEEecCCcee-eeec
Q 022324 124 LILTGVGD------KVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIG-T-----RICIWRRNGLRS-VFPS 188 (299)
Q Consensus 124 ~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~d-~-----~i~v~d~~~~~~-~~~~ 188 (299)
+++.|+.+ ..+..+|..+++....-..+. ....+++..+--+++|+.+ | ++..||..+.+- ....
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~ 366 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP 366 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCC
Confidence 66777766 367888888775544333222 2223444444223337777 3 788899887751 1111
Q ss_pred cCCccceeeeeccCCCeEEEecCCCc-----EEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCCC------c
Q 022324 189 REGTFMKGLCMRYFDPEAVVGCEDGT-----ARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSLG------S 255 (299)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg------~ 255 (299)
........-.....+...++|+.||. +-.||..+.+ .+..... ...-.+++...+.+.++|+.++ +
T Consensus 367 M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~s 445 (571)
T KOG4441|consen 367 MNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNS 445 (571)
T ss_pred ccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccce
Confidence 11111111122233444778888865 6677776533 2222211 1111222223446777777554 5
Q ss_pred EEEEeCCCCc
Q 022324 256 IAISGLSSDQ 265 (299)
Q Consensus 256 i~iwd~~~~~ 265 (299)
+..||..+++
T Consensus 446 ve~YDP~t~~ 455 (571)
T KOG4441|consen 446 VECYDPETNT 455 (571)
T ss_pred EEEEcCCCCc
Confidence 6788887664
No 399
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.44 E-value=4.3 Score=34.48 Aligned_cols=172 Identities=10% Similarity=-0.005 Sum_probs=82.8
Q ss_pred cCC--EEEEEeCCC--cEEEEecCCceeEEEecCCCcee-EEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCc
Q 022324 121 KRG--LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGT 192 (299)
Q Consensus 121 ~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~ 192 (299)
+++ +|+.+..|| .+.+.|+.+++..+--.+..... ...++++.+.++ .-.+..+.-.|+++.+ .++..+..-
T Consensus 45 ~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 45 DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTE
T ss_pred CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCccc
Confidence 455 566666665 56777888988877666543323 367778888887 6667799999998875 344444443
Q ss_pred ccee-eeeccCCCeEEE----------------------ecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC--CeE
Q 022324 193 FMKG-LCMRYFDPEAVV----------------------GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLI 247 (299)
Q Consensus 193 ~~~~-~~~~~~~~~l~s----------------------~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l 247 (299)
.... ...+.++..++- +--...|.-.|+.+|+....+ .....+..+.|+|. .+|
T Consensus 125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp~li 203 (386)
T PF14583_consen 125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTDPTLI 203 (386)
T ss_dssp EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTEEEEE
T ss_pred ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCCCCEE
Confidence 3222 112233333211 111233566677777765555 34667889999986 566
Q ss_pred EEEeC---CC-cEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022324 248 ISGSS---LG-SIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 248 ~~~~~---dg-~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 293 (299)
+-|-+ +. .-|||-+++ +.....+..+.....+..=-|.|||..+.-
T Consensus 204 ~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 204 MFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred EEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 66554 22 135665543 333444433322213344456777776654
No 400
>PHA03098 kelch-like protein; Provisional
Probab=93.28 E-value=3.5 Score=37.21 Aligned_cols=141 Identities=13% Similarity=0.076 Sum_probs=65.5
Q ss_pred EEEEEeCC-----CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC------CeEEEEecCCceee-eecc
Q 022324 124 LILTGVGD-----KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG------TRICIWRRNGLRSV-FPSR 189 (299)
Q Consensus 124 ~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d------~~i~v~d~~~~~~~-~~~~ 189 (299)
..+.||.+ ..+..||..+.+....-..+.+... .....+++..+ |+.+ ..+..||+.+..-. ....
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 424 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL 424 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCC
Confidence 55566654 3467788776654332222221111 12223455544 5421 36888998876411 1111
Q ss_pred CCccceeeeeccCCCeEEEecCC--------CcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCC-----C
Q 022324 190 EGTFMKGLCMRYFDPEAVVGCED--------GTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSL-----G 254 (299)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-----g 254 (299)
........+....+..++.|+.+ ..+.+||..+.+ .+.......... +++...+++++.|+.+ .
T Consensus 425 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~-~~~~~~~~iyv~GG~~~~~~~~ 503 (534)
T PHA03098 425 PISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINA-SLCIFNNKIYVVGGDKYEYYIN 503 (534)
T ss_pred CccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccc-eEEEECCEEEEEcCCcCCcccc
Confidence 11111111222334445556543 237888887643 222221111111 2222234667777654 4
Q ss_pred cEEEEeCCCCc
Q 022324 255 SIAISGLSSDQ 265 (299)
Q Consensus 255 ~i~iwd~~~~~ 265 (299)
.+.+||..+.+
T Consensus 504 ~v~~yd~~~~~ 514 (534)
T PHA03098 504 EIEVYDDKTNT 514 (534)
T ss_pred eeEEEeCCCCE
Confidence 68888887654
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=2.1 Score=41.12 Aligned_cols=137 Identities=11% Similarity=0.033 Sum_probs=83.3
Q ss_pred eEEEEecCCCEEE---EEcCCeEEEEecCCce-------eeeeccC-----CccceeeeeccCCCe-EEEecCCCcEEEE
Q 022324 155 SLVDFDFDESKIV---GLIGTRICIWRRNGLR-------SVFPSRE-----GTFMKGLCMRYFDPE-AVVGCEDGTARVF 218 (299)
Q Consensus 155 ~~~~~~~~~~~l~---~~~d~~i~v~d~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~-l~s~~~d~~i~iw 218 (299)
+.+...+|....+ .+.+-.|+.||++.-. ..+..+. ......+.|+|.-+. .+....|+.|++.
T Consensus 104 ~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~ 183 (1405)
T KOG3630|consen 104 VIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVK 183 (1405)
T ss_pred eEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhh
Confidence 3455566766543 3334488999997532 1111110 111112345555443 5667778888887
Q ss_pred EcCCcce-eeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCC--CCcEEEEEccCCCCeEEe
Q 022324 219 DMYSRKC-SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC--TGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 219 d~~~~~~-~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~i~~~~~s~~g~~l~s 293 (299)
.+..... +..+ ......++++|+|. +.++.|-..|++.-|... ++....+.+... ...|.+++|-....+|+.
T Consensus 184 ~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 184 STKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 7654322 2233 33456899999998 899999999999999863 554444433221 127999999877777664
No 402
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.20 E-value=4.7 Score=34.18 Aligned_cols=161 Identities=14% Similarity=0.062 Sum_probs=85.0
Q ss_pred cEEEEecCCceeEE-Eec----CCCc-eeEEEEecCCC-EEE--EEcCC---eEEEEecCCcee--eee-ccCCcc--ce
Q 022324 133 VMRLWSLEGYKCVE-EYS----LPNA-ASLVDFDFDES-KIV--GLIGT---RICIWRRNGLRS--VFP-SREGTF--MK 195 (299)
Q Consensus 133 ~i~iwd~~~~~~~~-~~~----~~~~-~~~~~~~~~~~-~l~--~~~d~---~i~v~d~~~~~~--~~~-~~~~~~--~~ 195 (299)
.+.|+|+.+++... ... .... ...+.|.++++ +++ ...+. .+.++|..++.. +.. ...+-+ ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 35667888776532 111 2222 33499999998 444 44443 567778866532 221 111111 11
Q ss_pred eeeec-cCCCe-EEEecCCCcEE--EEEcCCcceeeeccccCCceeE-EEeCCC--CeEEEEeCCC----cEEEEeCCCC
Q 022324 196 GLCMR-YFDPE-AVVGCEDGTAR--VFDMYSRKCSQIIRMHCAPVTS-LSLSED--QLIISGSSLG----SIAISGLSSD 264 (299)
Q Consensus 196 ~~~~~-~~~~~-l~s~~~d~~i~--iwd~~~~~~~~~~~~~~~~i~~-~~~~~~--~~l~~~~~dg----~i~iwd~~~~ 264 (299)
...+. +.+.. +.....+|.-+ +++...+. ...+....-.|.. +.++++ .+++++..++ .|..-++..+
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 22332 44444 44444666644 44555444 3455444555644 566666 4555666533 4555566534
Q ss_pred ceEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 265 QRVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
..+..+..... .-..+.|||+|++++..+.
T Consensus 318 ~~~~~LT~~~~--~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 318 GEPKCLTCEDG--DHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TEEEESSTTSS--TTEEEEE-TTSSEEEEEEE
T ss_pred CCeEeccCCCC--CceEEEECCCCCEEEEEEc
Confidence 55677766665 2269999999999886543
No 403
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.16 E-value=4.8 Score=34.21 Aligned_cols=152 Identities=12% Similarity=0.014 Sum_probs=73.6
Q ss_pred ecCCceeEEEecCCCcee------EEEEecCCCEEE-EEc-CC--eEEEEecCCceee-eeccCCccceeeeeccCCCeE
Q 022324 138 SLEGYKCVEEYSLPNAAS------LVDFDFDESKIV-GLI-GT--RICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEA 206 (299)
Q Consensus 138 d~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~-~~~-d~--~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 206 (299)
|..||..+..+..+.... .-+|.++|+.|+ ++. +| .++..|+.+++.. ++...+.......+++.+..+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 566777776665443322 246788998877 444 44 7888888888633 222222222234667777776
Q ss_pred EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC--CC-CeEEEEe----------------------CCCcEEEEeC
Q 022324 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS--ED-QLIISGS----------------------SLGSIAISGL 261 (299)
Q Consensus 207 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~--~~-~~l~~~~----------------------~dg~i~iwd~ 261 (299)
+-...+..+.-.|+++.+....+......+-...|. .| ..++-.- -...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 544455688888999887655555445544434443 33 3322211 1224666678
Q ss_pred CCCceEEEeeccCCCCcEEEEEccCCCCeEE
Q 022324 262 SSDQRVATLRSTDCTGHIICLMYPQFLHMLF 292 (299)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~ 292 (299)
.+|+.-..+.... .+..+.|+|...-++
T Consensus 176 ~tG~~~~v~~~~~---wlgH~~fsP~dp~li 203 (386)
T PF14583_consen 176 KTGERKVVFEDTD---WLGHVQFSPTDPTLI 203 (386)
T ss_dssp TT--EEEEEEESS----EEEEEEETTEEEEE
T ss_pred CCCceeEEEecCc---cccCcccCCCCCCEE
Confidence 8877655554433 788888998654443
No 404
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.90 E-value=0.027 Score=48.08 Aligned_cols=138 Identities=12% Similarity=0.124 Sum_probs=91.0
Q ss_pred ceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCccceeeeeccCCCe-EEEecCCCcEEEEEcCCcceeeecc
Q 022324 153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR 230 (299)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~ 230 (299)
.++...|-+.+..++ ++.+..+..||-.+....-....+... -++|.-.++. ++.+-..+.+.+||+.+... +++.
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~al-dm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE 113 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKAL-DMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLE 113 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHh-hhhhccccchhhhhhhcCCCeeechhhhhhH-HHHh
Confidence 344567777776677 888888889987665433222222222 2455555555 55667788999999985432 2222
Q ss_pred -ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 231 -MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 231 -~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
+....-.-+.|++. ..++.+...|.+.|++-.+.+.+.....|.. .++++++.+.+..+..+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~R--Rgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQR--RGTQIAVTLEDYVILCD 177 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccc--ceeEEEecccceeeecC
Confidence 11111222678888 8888999999999999988776666655666 88999999887655443
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.69 E-value=0.42 Score=45.42 Aligned_cols=97 Identities=10% Similarity=-0.064 Sum_probs=61.1
Q ss_pred eeeccCCCe--EEEecCCCcEEEEEcCCcceee-----ecc------ccCCceeEEEeCCC--CeEEEEeCCCcEEEEeC
Q 022324 197 LCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQ-----IIR------MHCAPVTSLSLSED--QLIISGSSLGSIAISGL 261 (299)
Q Consensus 197 ~~~~~~~~~--l~s~~~d~~i~iwd~~~~~~~~-----~~~------~~~~~i~~~~~~~~--~~l~~~~~dg~i~iwd~ 261 (299)
+.+.++... ++..+.+-.|..||+++..... .+. .......++.|+|. ...++...|+.|++..+
T Consensus 106 ~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~ 185 (1405)
T KOG3630|consen 106 FVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKST 185 (1405)
T ss_pred EEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhh
Confidence 344445444 3344445578899988643211 111 12334577888887 56778888999999887
Q ss_pred CCCc-eEEEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 262 SSDQ-RVATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 262 ~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.... .+..+... . ..++++|+|.|+.++.|--
T Consensus 186 ~~~~~~v~s~p~t-~--~~Tav~WSprGKQl~iG~n 218 (1405)
T KOG3630|consen 186 KQLAQNVTSFPVT-N--SQTAVLWSPRGKQLFIGRN 218 (1405)
T ss_pred hhhhhhhcccCcc-c--ceeeEEeccccceeeEecC
Confidence 6432 22332222 2 6899999999999998743
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.21 E-value=3.9 Score=38.48 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=47.1
Q ss_pred CeEEEecCCCcEEEEEcCCcceeeeccccCCcee-------------EEEeCC---CCeEEEEeC----------CCcEE
Q 022324 204 PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-------------SLSLSE---DQLIISGSS----------LGSIA 257 (299)
Q Consensus 204 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-------------~~~~~~---~~~l~~~~~----------dg~i~ 257 (299)
..++.++.|+.+.-.|.++|+.+..+.. .+.|. .+.-.| +..+++|+. +|.|+
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 4688889999999999999999877632 22110 111223 245666643 68899
Q ss_pred EEeCCCCceEEEee
Q 022324 258 ISGLSSDQRVATLR 271 (299)
Q Consensus 258 iwd~~~~~~~~~~~ 271 (299)
-+|.++|+.+..+.
T Consensus 340 A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 340 AFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCcEeeEEe
Confidence 99999999988775
No 407
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.19 E-value=5.4 Score=32.32 Aligned_cols=155 Identities=14% Similarity=0.057 Sum_probs=91.1
Q ss_pred ceeEEEecCCCceeEEEEecCCCEEE--EEcCC-eEEEEecCCceeeee--ccCC-ccceeeeeccCCCeEEEecC----
Q 022324 142 YKCVEEYSLPNAASLVDFDFDESKIV--GLIGT-RICIWRRNGLRSVFP--SREG-TFMKGLCMRYFDPEAVVGCE---- 211 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~d~-~i~v~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~s~~~---- 211 (299)
|+++.....+...--+.++|.-..-+ +=.-| ...++|..+.+.... ..++ +...--++++++.+|++.-.
T Consensus 58 Gk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~ 137 (366)
T COG3490 58 GKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP 137 (366)
T ss_pred CceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC
Confidence 44444444444334467777554433 33333 456788877653221 1111 11111268888888775432
Q ss_pred -CCcEEEEEcCCc-ceeeeccccCCceeEEEeCCC-CeEEEEeC------------------CCcEEEEeCCCCceEEEe
Q 022324 212 -DGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSS------------------LGSIAISGLSSDQRVATL 270 (299)
Q Consensus 212 -d~~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~------------------dg~i~iwd~~~~~~~~~~ 270 (299)
-|.|-+||.+.+ +.+.++..|.-....+.+.+| +.++.+.. .-++.+.|..+|+++.+.
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh 217 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH 217 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc
Confidence 356889998854 446677777777788888888 76666532 124555666677665443
Q ss_pred ecc--CCCCcEEEEEccCCCCeEEeeec
Q 022324 271 RST--DCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 271 ~~~--~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
.-. .....|+.++..+||+.++.+-+
T Consensus 218 ~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 218 TLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred cCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 322 11127999999999988776543
No 408
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.80 E-value=1.2 Score=40.36 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=43.6
Q ss_pred CCCeEEEecCCCcEEEEEcCC----cceeeecc----------------------ccCCceeEEEeCC----C-CeEEEE
Q 022324 202 FDPEAVVGCEDGTARVFDMYS----RKCSQIIR----------------------MHCAPVTSLSLSE----D-QLIISG 250 (299)
Q Consensus 202 ~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~----------------------~~~~~i~~~~~~~----~-~~l~~~ 250 (299)
+...++.+..||.+....... +....... ........++++. + .++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 555577788888887777654 11111110 0123455556655 5 899999
Q ss_pred eCCCcEEEEeCCCCceEEEeec
Q 022324 251 SSLGSIAISGLSSDQRVATLRS 272 (299)
Q Consensus 251 ~~dg~i~iwd~~~~~~~~~~~~ 272 (299)
+.|+.||+||+.+++++.+...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEET
T ss_pred eCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999999776643
No 409
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.42 E-value=6.6 Score=31.78 Aligned_cols=145 Identities=18% Similarity=0.142 Sum_probs=80.4
Q ss_pred EEEEEeCCCcEEEEecCCc-----eeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCce--eeeeccCCc----
Q 022324 124 LILTGVGDKVMRLWSLEGY-----KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR--SVFPSREGT---- 192 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~--~~~~~~~~~---- 192 (299)
..+.......|.+|..... +..+.+..++.+..++|. ++.++.+..+...+.|+.+.. ..+......
T Consensus 106 ~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~ 183 (275)
T PF00780_consen 106 RRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFK 183 (275)
T ss_pred eEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCceEEEecCCCCceEEeCccCCcchhh
Confidence 3333444458888887642 567788888888888887 556664445668888988553 222111110
Q ss_pred -----cceeeeeccCCCeEEEecCCCcEEEEEcCCcceee-eccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCce
Q 022324 193 -----FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR 266 (299)
Q Consensus 193 -----~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 266 (299)
......+.-.++.++.+. +..-.+.|. .|+..+ ..-.....+.++++.. .++++-+. +.|.||++.++++
T Consensus 184 ~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~~~-pyli~~~~-~~iEV~~~~~~~l 259 (275)
T PF00780_consen 184 SRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAYSS-PYLIAFSS-NSIEVRSLETGEL 259 (275)
T ss_pred hcccCCCceEEEEeCCceEEEEe-cceEEEEcC-CCCcCcccEEEcCCchhEEEEEC-CEEEEECC-CEEEEEECcCCcE
Confidence 011112222222333332 233333343 354443 1113344566676643 36666555 5599999999999
Q ss_pred EEEeeccC
Q 022324 267 VATLRSTD 274 (299)
Q Consensus 267 ~~~~~~~~ 274 (299)
++++....
T Consensus 260 vQ~i~~~~ 267 (275)
T PF00780_consen 260 VQTIPLPN 267 (275)
T ss_pred EEEEECCC
Confidence 99987553
No 410
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.41 E-value=8.9 Score=33.26 Aligned_cols=147 Identities=12% Similarity=0.132 Sum_probs=79.0
Q ss_pred EEe-cCC-E-EEEEeCCC----cEEEEecCCceeEEE-ecCCCceeEEEEecCCCEEE-EEcCC-----------eEEEE
Q 022324 118 CRM-KRG-L-ILTGVGDK----VMRLWSLEGYKCVEE-YSLPNAASLVDFDFDESKIV-GLIGT-----------RICIW 177 (299)
Q Consensus 118 ~~~-~~~-~-l~s~~~dg----~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~~d~-----------~i~v~ 177 (299)
..+ +++ + +++-+..| .++++|+.+++.+.. +..... ..+.|.++++.++ ...+. .|+.|
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 445 566 4 44445555 599999999987653 232211 1299999998877 44322 48888
Q ss_pred ecCCce----eeeeccCCcc-ceeeeeccCCCeEEE-ec--CC-CcEEEEEcCCc----ceeeecccc-CCceeEEEeCC
Q 022324 178 RRNGLR----SVFPSREGTF-MKGLCMRYFDPEAVV-GC--ED-GTARVFDMYSR----KCSQIIRMH-CAPVTSLSLSE 243 (299)
Q Consensus 178 d~~~~~----~~~~~~~~~~-~~~~~~~~~~~~l~s-~~--~d-~~i~iwd~~~~----~~~~~~~~~-~~~i~~~~~~~ 243 (299)
++.+.. .++....... ...+..+.++.+++. .. .+ ..+.+.|+..+ .....+... .+....+....
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~ 287 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHG 287 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEET
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccC
Confidence 888763 4555555544 334567777887443 22 22 45778888764 122222222 23233343333
Q ss_pred CCeEEEEe---CCCcEEEEeCCCCc
Q 022324 244 DQLIISGS---SLGSIAISGLSSDQ 265 (299)
Q Consensus 244 ~~~l~~~~---~dg~i~iwd~~~~~ 265 (299)
+.+++... .++.|.-.++.+..
T Consensus 288 ~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 288 DRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp TEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred CEEEEeeCCCCCCcEEEEecccccc
Confidence 43433332 24566667776654
No 411
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.11 E-value=6.9 Score=31.44 Aligned_cols=139 Identities=12% Similarity=0.007 Sum_probs=76.7
Q ss_pred ceeEEEEecCCCEEE-EE---cCCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEE-cCCcceee
Q 022324 153 AASLVDFDFDESKIV-GL---IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD-MYSRKCSQ 227 (299)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~ 227 (299)
.....+++++++.++ .. ....++++.......... .+.....-.|.+++...+....+...+++. ..+++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 345599999999888 33 233666666554432221 222222346777755555545555555553 33333221
Q ss_pred -ecc--ccCCceeEEEeCCC-CeEEEEe---CCCcEEEEeCC---CC------ceEEEeeccCCCCcEEEEEccCCCCeE
Q 022324 228 -IIR--MHCAPVTSLSLSED-QLIISGS---SLGSIAISGLS---SD------QRVATLRSTDCTGHIICLMYPQFLHML 291 (299)
Q Consensus 228 -~~~--~~~~~i~~~~~~~~-~~l~~~~---~dg~i~iwd~~---~~------~~~~~~~~~~~~~~i~~~~~s~~g~~l 291 (299)
... .....|..+.++|| ..++.-. .++.|.+=-+. .+ ..+........ .+..++|.+++.++
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~--~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS--DVTDVAWSDDSTLV 180 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC--cceeeeecCCCEEE
Confidence 111 11228999999999 5444433 45677766543 22 11111112223 79999999999888
Q ss_pred Eeee
Q 022324 292 FFLC 295 (299)
Q Consensus 292 ~s~s 295 (299)
+.+.
T Consensus 181 V~~~ 184 (253)
T PF10647_consen 181 VLGR 184 (253)
T ss_pred EEeC
Confidence 7664
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.79 E-value=13 Score=34.11 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=61.9
Q ss_pred EEEecCCCEEE-EEcCCeEEEEecCCceeeeecc---CCccceeeee--ccCCCeEEEecCCCcEEEEEcC---------
Q 022324 157 VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR---EGTFMKGLCM--RYFDPEAVVGCEDGTARVFDMY--------- 221 (299)
Q Consensus 157 ~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~--~~~~~~l~s~~~d~~i~iwd~~--------- 221 (299)
+.-+.-++..+ -+....+.|||.+.....+... .+.+. -+.| .++++.+++.+..+.|.+|--.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~-dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIR-DLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCcee-eceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 44444444433 4445589999999876433322 22222 2233 4556668888888899888642
Q ss_pred Ccceeeecc--cc-CCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022324 222 SRKCSQIIR--MH-CAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (299)
Q Consensus 222 ~~~~~~~~~--~~-~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (299)
+...+..+. .+ ..+|.+..|.++..+++|+ ++.+.|+|-.
T Consensus 114 ~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 114 SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred ccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 122333332 23 3678999999986676666 4568888753
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=90.48 E-value=12 Score=33.27 Aligned_cols=165 Identities=10% Similarity=-0.026 Sum_probs=75.1
Q ss_pred EEEEEeCCC-----cEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcC--CeEEEEecCCcee-eeeccCCcc
Q 022324 124 LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG--TRICIWRRNGLRS-VFPSREGTF 193 (299)
Q Consensus 124 ~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d--~~i~v~d~~~~~~-~~~~~~~~~ 193 (299)
+++.|+.++ .+..||..+++....-..+.+... ....-++...+ |+.+ ..+..||..+..- .........
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r 353 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR 353 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCC
Confidence 666676543 466788877664432222221111 12233555544 5543 3678888766531 111111111
Q ss_pred ceeeeeccCCCeEEEecCCC---cEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceE-
Q 022324 194 MKGLCMRYFDPEAVVGCEDG---TARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRV- 267 (299)
Q Consensus 194 ~~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~- 267 (299)
....+...++...+.|+.++ .+..||.++.+ .+......... .+++...+++.+.|+ ...+||..+++-.
T Consensus 354 ~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~ 429 (480)
T PHA02790 354 CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALVFGRRLFLVGR---NAEFYCESSNTWTL 429 (480)
T ss_pred cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEEECCEEEEECC---ceEEecCCCCcEeE
Confidence 11112233444456666543 46678876532 22122111111 122222345566663 4778998765422
Q ss_pred -EEeeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 268 -ATLRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 268 -~~~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
..+..... ....+. -+|+..+.|+.
T Consensus 430 ~~~m~~~r~--~~~~~v--~~~~IYviGG~ 455 (480)
T PHA02790 430 IDDPIYPRD--NPELII--VDNKLLLIGGF 455 (480)
T ss_pred cCCCCCCcc--ccEEEE--ECCEEEEECCc
Confidence 22211111 122222 26777777764
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.41 E-value=3.6 Score=35.58 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=54.9
Q ss_pred eeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCcee-EEEeC----------------CC---CeEEEEeCCCc
Q 022324 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-SLSLS----------------ED---QLIISGSSLGS 255 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~-~~~~~----------------~~---~~l~~~~~dg~ 255 (299)
.++++|.+...++...-|.|.++|+.++..++.+++..+.=. -+... +. -+++-+-.-|.
T Consensus 312 ~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg~ 391 (415)
T PF14655_consen 312 SICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRGI 391 (415)
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCCe
Confidence 467888888888888889999999999888877775443111 01000 01 13455667899
Q ss_pred EEEEeCCCCceEEEeeccC
Q 022324 256 IAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 256 i~iwd~~~~~~~~~~~~~~ 274 (299)
|.||++++|..+..+....
T Consensus 392 lEvW~~~~g~Rv~a~~v~k 410 (415)
T PF14655_consen 392 LEVWSMRQGPRVAAFNVGK 410 (415)
T ss_pred EEEEecCCCCEEEEEEeCC
Confidence 9999999998887776543
No 415
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.36 E-value=2.3 Score=33.24 Aligned_cols=68 Identities=15% Similarity=0.031 Sum_probs=47.5
Q ss_pred eeeccCCCeEEEecCCCcEEEEEcCCcceeeec-------c-------ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022324 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-------R-------MHCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (299)
Q Consensus 197 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~-------~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (299)
..+...+.++++-..+|.+++||+.+++.+..- . .....|..+.++.+...+..-.+|..+.|+..
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 356677888999999999999999987654322 1 23456788888866333333456888999876
Q ss_pred CC
Q 022324 263 SD 264 (299)
Q Consensus 263 ~~ 264 (299)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 44
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.81 E-value=9.6 Score=31.04 Aligned_cols=184 Identities=9% Similarity=0.066 Sum_probs=113.8
Q ss_pred eccccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCCC--ceeEEEEecCCCEEE-EEcCCeEEEEecCCce
Q 022324 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (299)
Q Consensus 109 ~~h~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~ 183 (299)
.+-++.|.++.| ++. .|++......-.++=..+|+.+.++.... ..-.+++..++.+++ --.+..++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 455566999999 444 77777777777788778899999887432 223367777776666 4446777777665432
Q ss_pred e---------eeeccC--CccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeec---ccc-------CCceeEEEeC
Q 022324 184 S---------VFPSRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMH-------CAPVTSLSLS 242 (299)
Q Consensus 184 ~---------~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~-------~~~i~~~~~~ 242 (299)
. .+.... +...-.+++.+.+..++.+-+-+-+.||........... ..+ -..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 1 111111 122225788888888888888777888776633211111 011 2346778888
Q ss_pred CC--CeEEEEeCCCcEEEEeCCCCceEEEeeccCCC-------CcEEEEEccCCCCeEEe
Q 022324 243 ED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCT-------GHIICLMYPQFLHMLFF 293 (299)
Q Consensus 243 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~s~~g~~l~s 293 (299)
+. .+++-+.+++.+.-.|.. |+.+..+.-..+. ...-.++..++|...++
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 65 677777788888888874 6655544322211 13456788888775554
No 417
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=89.75 E-value=12 Score=32.23 Aligned_cols=157 Identities=10% Similarity=0.117 Sum_probs=77.8
Q ss_pred CeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeE-------------------------------------------EEe
Q 022324 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-------------------------------------------EEY 148 (299)
Q Consensus 114 ~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-------------------------------------------~~~ 148 (299)
.|+.+.+ .+. .|+.|...|.|-+|.....+.- ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4777777 333 8888888998888876432111 011
Q ss_pred cCC-CceeEEEEecCCCEEE-EEcCCeEEEEecCCceeeeeccCCc---------cceeee-----eccCC---CeEEEe
Q 022324 149 SLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGT---------FMKGLC-----MRYFD---PEAVVG 209 (299)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~---------~~~~~~-----~~~~~---~~l~s~ 209 (299)
+.. .++..++.+ |--+++ |..+|.+.|.|++++..++..+-.. ....+. ..-++ ..+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 112 233335554 334566 9999999999999987655432221 011111 21112 227889
Q ss_pred cCCCcEEEEEcCC---ccee----eeccccCCceeEEE-eC------------------CC---CeEEEEeCCCcEEEEe
Q 022324 210 CEDGTARVFDMYS---RKCS----QIIRMHCAPVTSLS-LS------------------ED---QLIISGSSLGSIAISG 260 (299)
Q Consensus 210 ~~d~~i~iwd~~~---~~~~----~~~~~~~~~i~~~~-~~------------------~~---~~l~~~~~dg~i~iwd 260 (299)
...|.+.+|.+.- +.-. .....+.++|..+. ++ ++ .-++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999997641 2111 11113445554443 21 11 1244445577899999
Q ss_pred CCCCceEEEee
Q 022324 261 LSSDQRVATLR 271 (299)
Q Consensus 261 ~~~~~~~~~~~ 271 (299)
..+.+..+...
T Consensus 242 ~~~~k~~~K~~ 252 (395)
T PF08596_consen 242 PPKSKGAHKSF 252 (395)
T ss_dssp TT---EEEEE-
T ss_pred CCCCcccceee
Confidence 98877655554
No 418
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.67 E-value=1.5 Score=22.18 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=22.2
Q ss_pred cCCEEEEEeCCCcEEEEecCCceeEEEe
Q 022324 121 KRGLILTGVGDKVMRLWSLEGYKCVEEY 148 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 148 (299)
.++.++.++.+|.+..+|.++|+.+..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 3457888888999999999888877653
No 419
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.11 E-value=14 Score=32.02 Aligned_cols=166 Identities=10% Similarity=-0.016 Sum_probs=70.2
Q ss_pred CcEEEEecCCceeEEEecCCC--ceeE--EEEecCCCEEEEEc---------------------CCeEEEEecCCceeee
Q 022324 132 KVMRLWSLEGYKCVEEYSLPN--AASL--VDFDFDESKIVGLI---------------------GTRICIWRRNGLRSVF 186 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~--~~~~--~~~~~~~~~l~~~~---------------------d~~i~v~d~~~~~~~~ 186 (299)
|-+.+.|-++.+.....+... .... +-+.|..+.++.+. ..++.+||..+.+...
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 457777888777777666432 2222 55566666666332 3489999999886433
Q ss_pred e--ccCCc-cceeeee--ccCCCe-EEEecCCCcEEEEEc-CCcc----eeeecc-----------------ccCCceeE
Q 022324 187 P--SREGT-FMKGLCM--RYFDPE-AVVGCEDGTARVFDM-YSRK----CSQIIR-----------------MHCAPVTS 238 (299)
Q Consensus 187 ~--~~~~~-~~~~~~~--~~~~~~-l~s~~~d~~i~iwd~-~~~~----~~~~~~-----------------~~~~~i~~ 238 (299)
. .-... ..--+.+ .|...+ ++.+.-..+|..|-. +.++ .+-++. .-..-|+.
T Consensus 237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred EEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 2 22211 1112233 333444 444444455555543 2221 111111 11245789
Q ss_pred EEeCCC-CeEEE-EeCCCcEEEEeCCCC---ceEEEeeccC--------------CCCcEEEEEccCCCCeEE-eeecc
Q 022324 239 LSLSED-QLIIS-GSSLGSIAISGLSSD---QRVATLRSTD--------------CTGHIICLMYPQFLHMLF-FLCFL 297 (299)
Q Consensus 239 ~~~~~~-~~l~~-~~~dg~i~iwd~~~~---~~~~~~~~~~--------------~~~~i~~~~~s~~g~~l~-s~s~~ 297 (299)
|..|-| ++|.. +-.+|.|+.||+..- +++.++..-. -.+..+-+..|.||+.|. |.|+|
T Consensus 317 I~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSLy 395 (461)
T PF05694_consen 317 ILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSLY 395 (461)
T ss_dssp EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE----
T ss_pred EEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeecc
Confidence 999987 66555 446999999999763 3333322110 001346778899998775 55554
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.76 E-value=15 Score=34.52 Aligned_cols=33 Identities=6% Similarity=0.053 Sum_probs=27.5
Q ss_pred cCCceeEEEeCCC----CeEEEEeCCCcEEEEeCCCC
Q 022324 232 HCAPVTSLSLSED----QLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 232 ~~~~i~~~~~~~~----~~l~~~~~dg~i~iwd~~~~ 264 (299)
....|..+.|+|. ..|++-..|+++|+||+...
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 3457899999984 58889999999999999753
No 421
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.68 E-value=4 Score=31.55 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=38.1
Q ss_pred eeEEEeCCCCeEEEEeCCCcEEEEeCCC--CceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022324 236 VTSLSLSEDQLIISGSSLGSIAISGLSS--DQRVATLRSTDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 236 i~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 293 (299)
...+...+.+.|+.+...+.|.+|++.+ .+.+.++..-. .|..+.++..|+||++
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~---~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVG---RVLQLVYSEAGDYLVT 76 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchh---heeEEEeccccceEEE
Confidence 3344444423444446677899999983 45566676553 8999999999999987
No 422
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.60 E-value=2.2 Score=22.90 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=25.8
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEc
Q 022324 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMY 284 (299)
Q Consensus 246 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~ 284 (299)
++++...+++|.++|..+++.+..+.... ....++|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~---~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGG---YPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCC---CCceEEe
Confidence 44555568999999999999888887643 3445554
No 423
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.53 E-value=2.5 Score=22.65 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=25.5
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCCceeEEEE
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDF 159 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 159 (299)
++++...+++|.++|..+++.+..+........+.|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 344455688999999999988888876554444444
No 424
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.49 E-value=13 Score=30.64 Aligned_cols=161 Identities=12% Similarity=0.100 Sum_probs=94.1
Q ss_pred EEEEEeCCCcEEEEecCCcee-----EEEec-C-CCceeE-EEEecC--CCEEE--EEcCCeEEEEecCCceeeeec-cC
Q 022324 124 LILTGVGDKVMRLWSLEGYKC-----VEEYS-L-PNAASL-VDFDFD--ESKIV--GLIGTRICIWRRNGLRSVFPS-RE 190 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~-~-~~~~~~-~~~~~~--~~~l~--~~~d~~i~v~d~~~~~~~~~~-~~ 190 (299)
.++.++.||+|.-|...-+.. ...+. . ...++. +++... +.+|. -...++|.|||-.=....... ..
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 478899999999998542221 12222 1 234444 666533 45555 345789999986533211100 00
Q ss_pred CccceeeeeccC-----CC--------------eEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCC-----
Q 022324 191 GTFMKGLCMRYF-----DP--------------EAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED----- 244 (299)
Q Consensus 191 ~~~~~~~~~~~~-----~~--------------~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~----- 244 (299)
..... ..+.|. +. .=+.|..-|.|-+||+. +..++.+. +.-...+.|+..|.
T Consensus 182 DP~iP-agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 182 DPALP-AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCC-CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00000 011111 11 12344556789999987 88888774 23345677777652
Q ss_pred --CeEEEEeCCCcEEEEeCCCCceEEEeeccCCC----CcEEEEEccC
Q 022324 245 --QLIISGSSLGSIAISGLSSDQRVATLRSTDCT----GHIICLMYPQ 286 (299)
Q Consensus 245 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~i~~~~~s~ 286 (299)
.+|+---.||+|..||..+++.+-.+....+. ..++.++|-.
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 45666667999999999999988888765542 2467888865
No 425
>PHA02790 Kelch-like protein; Provisional
Probab=88.17 E-value=18 Score=32.16 Aligned_cols=138 Identities=14% Similarity=0.039 Sum_probs=64.2
Q ss_pred EEEEEeCC--CcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEE-EEcCC---eEEEEecCCceeeee-ccCCccce
Q 022324 124 LILTGVGD--KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIGT---RICIWRRNGLRSVFP-SREGTFMK 195 (299)
Q Consensus 124 ~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~d~---~i~v~d~~~~~~~~~-~~~~~~~~ 195 (299)
..+.|+.+ .++..||..+++....-..+..... ....-+++..+ |+.++ .+..||..+..-... ........
T Consensus 321 iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~ 400 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK 400 (480)
T ss_pred EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc
Confidence 44555543 3577788776654332222222222 22233555545 55443 577888877642211 11111111
Q ss_pred eeeeccCCCeEEEecCCCcEEEEEcCCcc--eeeeccccCCceeEEEeCCCCeEEEEeCC-----CcEEEEeCCCCc
Q 022324 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSEDQLIISGSSL-----GSIAISGLSSDQ 265 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 265 (299)
..+...++...+.| |.+.+||..+.+ .+..+..... -.+++...++..+.|+.+ .++..||..+++
T Consensus 401 ~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~-~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 401 SCALVFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRD-NPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ceEEEECCEEEEEC---CceEEecCCCCcEeEcCCCCCCcc-ccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 11222333334444 346788876542 2332321122 223344455777777754 346677766543
No 426
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.90 E-value=8.3 Score=31.29 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=61.8
Q ss_pred eeeccCCCe-EEEecCCCc-EEEEEcCCcceeeeccccCC--ceeEEEeCCC-CeEEEEeC-----CCcEEEEeCCCC-c
Q 022324 197 LCMRYFDPE-AVVGCEDGT-ARVFDMYSRKCSQIIRMHCA--PVTSLSLSED-QLIISGSS-----LGSIAISGLSSD-Q 265 (299)
Q Consensus 197 ~~~~~~~~~-l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~-~~l~~~~~-----dg~i~iwd~~~~-~ 265 (299)
+.++|..+. ++.+-.-|+ ..++|....+....+...++ .--.=.|+|| .+|...-. -|.|-|||.+.+ +
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 456666665 555555554 56888887665555432111 1122358898 65554432 367999999854 4
Q ss_pred eEEEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 266 RVATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
.+.++..+.- ....+.+.+||+.|+.+
T Consensus 153 rvgE~~t~Gi--GpHev~lm~DGrtlvva 179 (366)
T COG3490 153 RVGEFSTHGI--GPHEVTLMADGRTLVVA 179 (366)
T ss_pred eecccccCCc--CcceeEEecCCcEEEEe
Confidence 5677777766 67889999999988865
No 427
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=87.85 E-value=6.5 Score=35.20 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=51.5
Q ss_pred CeEEEecCCCcEEEEEcCC-----cceeeecc---ccCCc--eeEEEeCCC-CeEEEEeCCCcEEEEeCCCCc--eEEEe
Q 022324 204 PEAVVGCEDGTARVFDMYS-----RKCSQIIR---MHCAP--VTSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATL 270 (299)
Q Consensus 204 ~~l~s~~~d~~i~iwd~~~-----~~~~~~~~---~~~~~--i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~ 270 (299)
+.+++.-..+.|.+|.+.. .+.+..-. ...-+ ...+.|+|. ..|++-.....-.+++++... ...-+
T Consensus 73 paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi 152 (671)
T PF15390_consen 73 PALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI 152 (671)
T ss_pred CceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec
Confidence 3456666678899998752 22221111 11111 245789998 666665555544566665432 22333
Q ss_pred eccCCCCcEEEEEccCCCCeEEee
Q 022324 271 RSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 271 ~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
+. .+ .|.|.+|.+||+.|+.+
T Consensus 153 ~~-~G--~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 153 KT-SG--LIHCACWTKDGQRLVVA 173 (671)
T ss_pred cC-Cc--eEEEEEecCcCCEEEEE
Confidence 22 23 89999999999988765
No 428
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.72 E-value=0.47 Score=44.08 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEE-----------eCCC-CeEEEEeCCCcEEEEeCC-----CCc
Q 022324 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS-----------LSED-QLIISGSSLGSIAISGLS-----SDQ 265 (299)
Q Consensus 203 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~-----------~~~~-~~l~~~~~dg~i~iwd~~-----~~~ 265 (299)
..++..+-.++.+++....+... .-+.+|...+..++ ++|| ..+++++.||.++.|-+. .-+
T Consensus 195 ~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~r 273 (1283)
T KOG1916|consen 195 KVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHR 273 (1283)
T ss_pred cceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHh
Confidence 34466777888888777664332 33445665555543 4688 889999999987777653 345
Q ss_pred eEEEeeccCCCCcEEEEEccCC
Q 022324 266 RVATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 266 ~~~~~~~~~~~~~i~~~~~s~~ 287 (299)
|+..++.|.+. +-.|.-|+.+
T Consensus 274 clhewkphd~~-p~vC~lc~~~ 294 (1283)
T KOG1916|consen 274 CLHEWKPHDKH-PRVCWLCHKQ 294 (1283)
T ss_pred hhhccCCCCCC-Cceeeeeccc
Confidence 67777777743 3333334443
No 429
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=87.53 E-value=15 Score=30.40 Aligned_cols=179 Identities=14% Similarity=0.033 Sum_probs=79.1
Q ss_pred eeEEEecCC-EEEEEeCCCcEEEEecCCceeEEEec----CCCceeEEEEecCCCEEEEEcCCeEEEEecCCc--eeeee
Q 022324 115 VDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYS----LPNAASLVDFDFDESKIVGLIGTRICIWRRNGL--RSVFP 187 (299)
Q Consensus 115 i~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~--~~~~~ 187 (299)
..++.|.++ .+++| ..+. .+...+.|+.-..+. .+.....+....++..++++..|.|+.=.=... +.+..
T Consensus 64 l~~I~f~~~~g~ivG-~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~ 141 (302)
T PF14870_consen 64 LNSISFDGNEGWIVG-EPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVS 141 (302)
T ss_dssp EEEEEEETTEEEEEE-ETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-
T ss_pred EEEEEecCCceEEEc-CCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEccc
Confidence 456677555 44444 4443 333444444333332 223333444334443444555555433221111 12222
Q ss_pred ccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeC-CCCce
Q 022324 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGL-SSDQR 266 (299)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~ 266 (299)
...+... .....+++.+++++.....+.-||.....-...-+.....|..|.|.|+..|......|.|+.=+. ...+.
T Consensus 142 ~~~gs~~-~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSIN-DITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EE-EEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEE
T ss_pred CCcceeE-eEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccc
Confidence 2223322 224456777777776666666787653222222223467899999999933333448888888872 22222
Q ss_pred EEE--eeccCCCCcEEEEEccCCCCeEEeeec
Q 022324 267 VAT--LRSTDCTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 267 ~~~--~~~~~~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
... .........+..++|.+++...++|+-
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 222 111111115899999999888887764
No 430
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.38 E-value=25 Score=32.79 Aligned_cols=92 Identities=11% Similarity=0.041 Sum_probs=56.2
Q ss_pred EEEecCCCcEEEEEcCC-------c----c---------eeeeccccCCceeEEEeC--CC-CeEEEEeCCCcEEEEeCC
Q 022324 206 AVVGCEDGTARVFDMYS-------R----K---------CSQIIRMHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLS 262 (299)
Q Consensus 206 l~s~~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~~i~~~~~~--~~-~~l~~~~~dg~i~iwd~~ 262 (299)
|+.+.+||.|.+|..++ . . +...+ .-...+++++++ .. ++||+++....|.||-..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence 78899999999997632 1 0 11111 123468999998 66 888888888888887654
Q ss_pred CC-ceEEEeeccCCCCcEEEEEccCCC---C---eEEeeeccc
Q 022324 263 SD-QRVATLRSTDCTGHIICLMYPQFL---H---MLFFLCFLP 298 (299)
Q Consensus 263 ~~-~~~~~~~~~~~~~~i~~~~~s~~g---~---~l~s~s~~~ 298 (299)
.. +.......+.....|.+++|-++. . .|++++.++
T Consensus 196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence 32 111111111111168888887753 2 677777654
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.24 E-value=8.6 Score=27.31 Aligned_cols=102 Identities=5% Similarity=-0.048 Sum_probs=60.9
Q ss_pred EEEEEeCCCcEEEEecCC--------ceeEEEecCCCceeEEEEec-----CCCEEEEEcCCeEEEEecCCceeeeec-c
Q 022324 124 LILTGVGDKVMRLWSLEG--------YKCVEEYSLPNAASLVDFDF-----DESKIVGLIGTRICIWRRNGLRSVFPS-R 189 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~d~~i~v~d~~~~~~~~~~-~ 189 (299)
.|+.++.-|.|.|++... ...+..+.....+.+++-.+ +...|+.+....+..||+.....+|.. .
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~ 91 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEV 91 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhC
Confidence 788888889999998763 23456666677777655433 234566777789999999887644432 2
Q ss_pred CCccceee--eeccCCCeEEEecCCCcEEEEEcCCcce
Q 022324 190 EGTFMKGL--CMRYFDPEAVVGCEDGTARVFDMYSRKC 225 (299)
Q Consensus 190 ~~~~~~~~--~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 225 (299)
......++ .+......++..+.+..|.-||..-.+.
T Consensus 92 ~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 92 PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 22222221 1222223355555566777777653333
No 432
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.47 E-value=25 Score=31.79 Aligned_cols=144 Identities=9% Similarity=0.027 Sum_probs=80.2
Q ss_pred ccCeeEEEecCC--EEEEEe--CCCcEEEEecCCceeEEEecCCCceeEEEEecCC-----CEEEEEcCCeEEEEecCCc
Q 022324 112 SVGVDQCRMKRG--LILTGV--GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE-----SKIVGLIGTRICIWRRNGL 182 (299)
Q Consensus 112 ~~~i~~~~~~~~--~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~d~~i~v~d~~~~ 182 (299)
-.+|..++|.|| .++|.- .+|.+++=| .+.+..|+ .+.-+.|.|-+ .+||.-....|.||-+.-.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 358889999776 444443 344444432 22333332 24447887743 4566888889999988621
Q ss_pred -----e----eeeec--cCCccceeeeeccCCCeEEEecCCCcEEEEEcCC--cceeeeccccCCceeEEEeCCC-CeEE
Q 022324 183 -----R----SVFPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS--RKCSQIIRMHCAPVTSLSLSED-QLII 248 (299)
Q Consensus 183 -----~----~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (299)
+ ...+. .-........|+|....|+.-.....-.+++++. ......+ ...+.|.|.+|.+| +.|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence 1 01111 0001112346888887765544443334555543 3344445 45678999999998 5444
Q ss_pred -EEeCCCcEEEEeCC
Q 022324 249 -SGSSLGSIAISGLS 262 (299)
Q Consensus 249 -~~~~dg~i~iwd~~ 262 (299)
+.+..=.-+|||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 44444456889864
No 433
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=86.46 E-value=7.6 Score=31.09 Aligned_cols=67 Identities=10% Similarity=0.232 Sum_probs=49.6
Q ss_pred cccCeeEEEe-----cC--C--EEEEEeCCCcEEEEecCCceeEEEecCCCceeEE----EEe-cCCCEEEEEcCCeEEE
Q 022324 111 HSVGVDQCRM-----KR--G--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLV----DFD-FDESKIVGLIGTRICI 176 (299)
Q Consensus 111 h~~~i~~~~~-----~~--~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~-~~~~~l~~~~d~~i~v 176 (299)
+...|+|+.. .+ . .|+.|..+|.|.|.|.+....+..++.+..++.+ .+. -|.+.++++.||.|++
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 4567888754 12 2 8999999999999999988888888877655443 333 4555566999999987
Q ss_pred E
Q 022324 177 W 177 (299)
Q Consensus 177 ~ 177 (299)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 434
>PRK13616 lipoprotein LpqB; Provisional
Probab=86.12 E-value=27 Score=32.02 Aligned_cols=131 Identities=8% Similarity=0.007 Sum_probs=67.0
Q ss_pred eeEEEEecCCCEEE-EEc------------CCeEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecCCCcEEE---
Q 022324 154 ASLVDFDFDESKIV-GLI------------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARV--- 217 (299)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i--- 217 (299)
...-.|+|+++.++ ... .+.+++.++..+.... ...+.+ ..+.|++++..++... ++.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~I-ssl~wSpDG~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPI-SELQLSRDGVRAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCc-CeEEECCCCCEEEEEE-CCEEEEEEE
Confidence 44588999988766 322 1234333444332211 222233 3568999999966544 467766
Q ss_pred EEcCCcce-e---eecc-ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCC
Q 022324 218 FDMYSRKC-S---QIIR-MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 218 wd~~~~~~-~---~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~ 287 (299)
-....|+. + ..+. .-...+.++.|.++..|+++..++.-.+|.+.- |.....+....-..++..++=+++
T Consensus 476 vr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 476 EQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred EeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence 44344431 1 1121 223346889999884355666555555555432 332222222211126777776664
No 435
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.86 E-value=19 Score=30.00 Aligned_cols=135 Identities=14% Similarity=0.148 Sum_probs=60.4
Q ss_pred EecCCEEEEEeCCC-----cEEEEecCCceeE---EEec-CCCceeE-EEEecCCCEEE-EEc-----CCeEEEEecCCc
Q 022324 119 RMKRGLILTGVGDK-----VMRLWSLEGYKCV---EEYS-LPNAASL-VDFDFDESKIV-GLI-----GTRICIWRRNGL 182 (299)
Q Consensus 119 ~~~~~~l~s~~~dg-----~i~iwd~~~~~~~---~~~~-~~~~~~~-~~~~~~~~~l~-~~~-----d~~i~v~d~~~~ 182 (299)
...+.+++.|+.++ .+..+|+.+.+.. ..+. .+..... .+..-++++.+ ++. ...+..||+.+.
T Consensus 70 ~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 70 SVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred EECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 33444556666543 4666677665531 1221 1111111 22223455544 443 236888998876
Q ss_pred e-eeeec-cCCccceeeeeccCCCeEEEecCCCc----EEEEEcCCcc--eeeeccccCCc-----eeEEEeCCCCeEEE
Q 022324 183 R-SVFPS-REGTFMKGLCMRYFDPEAVVGCEDGT----ARVFDMYSRK--CSQIIRMHCAP-----VTSLSLSEDQLIIS 249 (299)
Q Consensus 183 ~-~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~----i~iwd~~~~~--~~~~~~~~~~~-----i~~~~~~~~~~l~~ 249 (299)
+ ..... .........+....+...+.|+.++. +.+||+.+.+ .+........+ ...+....+.+++.
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 229 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCI 229 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEE
Confidence 4 11111 11111111223344555666766532 4578887643 22221100111 22233334477888
Q ss_pred EeCC
Q 022324 250 GSSL 253 (299)
Q Consensus 250 ~~~d 253 (299)
|+.+
T Consensus 230 GG~~ 233 (323)
T TIGR03548 230 GGFN 233 (323)
T ss_pred CCcC
Confidence 8865
No 436
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=85.20 E-value=23 Score=30.26 Aligned_cols=153 Identities=10% Similarity=0.038 Sum_probs=91.6
Q ss_pred cCCEEEEEeCCCcEEEEecCCceeEEEecCCC-ceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCc-cceee
Q 022324 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMKGL 197 (299)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~ 197 (299)
.++.++.++.+|.+...|..+|+.+....... .... -.+-.++..++.+.++.++-.|..++.......... .....
T Consensus 110 ~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 110 SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred eCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 46689999999999999998999998888766 2222 233334444445577888888888776443321111 11011
Q ss_pred e--eccCCCeEEEecC--CCcEEEEEcCCcceeeeccc----cCCcee-EEEeCC-----CCeEEEEeCCCcEEEEeCCC
Q 022324 198 C--MRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRM----HCAPVT-SLSLSE-----DQLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 198 ~--~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~----~~~~i~-~~~~~~-----~~~l~~~~~dg~i~iwd~~~ 263 (299)
. ....+..++.+.. ++.+.-.|..+|......+. ....+. .-.+.. +.-+..++.++.+...|..+
T Consensus 190 ~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~ 269 (370)
T COG1520 190 YGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADT 269 (370)
T ss_pred ccCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCC
Confidence 1 1122333555655 66777888888887766421 111110 011111 22346677788899999999
Q ss_pred CceEEEeecc
Q 022324 264 DQRVATLRST 273 (299)
Q Consensus 264 ~~~~~~~~~~ 273 (299)
++.+..+...
T Consensus 270 G~~~W~~~~~ 279 (370)
T COG1520 270 GELIWSFPAG 279 (370)
T ss_pred CceEEEEecc
Confidence 9988877663
No 437
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=85.16 E-value=2.9 Score=27.35 Aligned_cols=44 Identities=9% Similarity=-0.003 Sum_probs=30.6
Q ss_pred EEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
.+..+|.+.-||..+++....+.+-. ..+.+++++|+.+|+.+=
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~---fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLY---FPNGVALSPDESFVLVAE 75 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEES---SEEEEEE-TTSSEEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCC---ccCeEEEcCCCCEEEEEe
Confidence 34557889999999887655555544 689999999999887753
No 438
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.04 E-value=22 Score=29.87 Aligned_cols=158 Identities=10% Similarity=0.029 Sum_probs=84.1
Q ss_pred CcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEEEcCCeEEEEecCCc-eee------eeccCCccceeeeeccCCC
Q 022324 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL-RSV------FPSREGTFMKGLCMRYFDP 204 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~-~~~------~~~~~~~~~~~~~~~~~~~ 204 (299)
-+|.|-|+...+.+.++..+...... -+.+..+..-|.||++.-..+... +.. |.........--++...+.
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PGC~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPGCWLIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTSEEEEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred CeEEEEECCCCceeeeecCCCEEEEE-ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 34555556666666666655422222 223333333889999888888733 211 1111111110112223344
Q ss_pred eEEEecCCCcEEEEEcCCcce--eeeccc----------cCCceeEEEeCCC-CeEEEEeC---CC-------cEEEEeC
Q 022324 205 EAVVGCEDGTARVFDMYSRKC--SQIIRM----------HCAPVTSLSLSED-QLIISGSS---LG-------SIAISGL 261 (299)
Q Consensus 205 ~l~s~~~d~~i~iwd~~~~~~--~~~~~~----------~~~~i~~~~~~~~-~~l~~~~~---dg-------~i~iwd~ 261 (299)
.++--+.+|.|+-.|+..... ...+.. ..+.-.-+++++. +.|.+-.. ++ .|-++|+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 456577888888888764432 111110 0112234667665 43333322 22 4778899
Q ss_pred CCCceEEEeeccCCCCcEEEEEccCCCC-eEEe
Q 022324 262 SSDQRVATLRSTDCTGHIICLMYPQFLH-MLFF 293 (299)
Q Consensus 262 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~s 293 (299)
.+++.+.++.... ++.+++.+.+.+ +|++
T Consensus 277 ~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 277 KTHKRVARIPLEH---PIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp TTTEEEEEEEEEE---EESEEEEESSSS-EEEE
T ss_pred CCCeEEEEEeCCC---ccceEEEccCCCcEEEE
Confidence 9999999998655 688999998776 5543
No 439
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.78 E-value=26 Score=33.01 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=40.4
Q ss_pred EEEEecCCCEEE-EEcCCeEEEEecCC----------cee-----e-------eeccCCccceeeeeccCC---CeEEEe
Q 022324 156 LVDFDFDESKIV-GLIGTRICIWRRNG----------LRS-----V-------FPSREGTFMKGLCMRYFD---PEAVVG 209 (299)
Q Consensus 156 ~~~~~~~~~~l~-~~~d~~i~v~d~~~----------~~~-----~-------~~~~~~~~~~~~~~~~~~---~~l~s~ 209 (299)
.+.++++|++++ .+. ..|.|-.+.. +.. . +....+....-+.|+|.+ ..|+.-
T Consensus 89 ~i~~n~~g~~lal~G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vL 167 (717)
T PF10168_consen 89 QISLNPTGSLLALVGP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVL 167 (717)
T ss_pred EEEECCCCCEEEEEcC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEE
Confidence 388899999999 555 4444444421 110 0 111111112235788885 558888
Q ss_pred cCCCcEEEEEcCC
Q 022324 210 CEDGTARVFDMYS 222 (299)
Q Consensus 210 ~~d~~i~iwd~~~ 222 (299)
..|+.+++||+..
T Consensus 168 tsdn~lR~y~~~~ 180 (717)
T PF10168_consen 168 TSDNTLRLYDISD 180 (717)
T ss_pred ecCCEEEEEecCC
Confidence 9999999999875
No 440
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.75 E-value=0.9 Score=36.96 Aligned_cols=59 Identities=31% Similarity=0.439 Sum_probs=47.3
Q ss_pred CCCCCCCCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHHHHhh
Q 022324 12 PPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCK 70 (299)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~ 70 (299)
|+.++-....-.+..+|.|+...||+.+.-.++....-+|+.|..++.+..+|..+-..
T Consensus 86 p~~~~~~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~ 144 (419)
T KOG2120|consen 86 PKLNRENNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLT 144 (419)
T ss_pred cchhcccCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccC
Confidence 33333333445577899999999999999999999999999999999988899774433
No 441
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=83.55 E-value=21 Score=28.62 Aligned_cols=96 Identities=9% Similarity=-0.051 Sum_probs=54.3
Q ss_pred eeeeccCCCeEEEec---CCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEe-CCCCceE-EE
Q 022324 196 GLCMRYFDPEAVVGC---EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG-LSSDQRV-AT 269 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd-~~~~~~~-~~ 269 (299)
..++++++..++... ....+.++... ....... ....+..-.|+++ ...+....+...+++. ..+++.. ..
T Consensus 28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 28 SPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred ceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 457888888755443 33344454433 3322221 2236777888888 5555555566666663 3333322 22
Q ss_pred eeccCCCCcEEEEEccCCCCeEEee
Q 022324 270 LRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 270 ~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
+........|..+.+||||..++.-
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v 129 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVV 129 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEE
Confidence 2222211169999999999988754
No 442
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=83.40 E-value=4 Score=21.60 Aligned_cols=29 Identities=10% Similarity=0.075 Sum_probs=23.1
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEecCCC
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPN 152 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 152 (299)
.++.++.||.+.-.|.++|+.+..++...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45666889999999999999888877543
No 443
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=82.49 E-value=5.1 Score=21.18 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=24.0
Q ss_pred eEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022324 246 LIISGSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 246 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
.+..++.+|.|.-.|.++|+.+..++...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 45667999999999999999988886543
No 444
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.41 E-value=25 Score=30.58 Aligned_cols=78 Identities=6% Similarity=-0.119 Sum_probs=48.1
Q ss_pred eeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccc-eeeeeccCCC---------------e--EEEecCC
Q 022324 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFM-KGLCMRYFDP---------------E--AVVGCED 212 (299)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~---------------~--l~s~~~d 212 (299)
...++.+|++++.+ ...-|.|.++|+.+.. .++++..+... ++........ . ++-+-.-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 44588999988777 5556899999998864 33343333211 1111111111 1 2345667
Q ss_pred CcEEEEEcCCcceeeeccc
Q 022324 213 GTARVFDMYSRKCSQIIRM 231 (299)
Q Consensus 213 ~~i~iwd~~~~~~~~~~~~ 231 (299)
|.|.||++++|..+..+..
T Consensus 390 g~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 390 GILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CeEEEEecCCCCEEEEEEe
Confidence 8899999999888777653
No 445
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.34 E-value=16 Score=31.79 Aligned_cols=134 Identities=12% Similarity=0.011 Sum_probs=76.1
Q ss_pred EEEecCCCEEEEEcCCeEEEEecCCce----eeeeccCCccce-e---eeeccCCCeEEEecCCCcEEEE-EcCCc-c--
Q 022324 157 VDFDFDESKIVGLIGTRICIWRRNGLR----SVFPSREGTFMK-G---LCMRYFDPEAVVGCEDGTARVF-DMYSR-K-- 224 (299)
Q Consensus 157 ~~~~~~~~~l~~~~d~~i~v~d~~~~~----~~~~~~~~~~~~-~---~~~~~~~~~l~s~~~d~~i~iw-d~~~~-~-- 224 (299)
+-..||++.+..-...++.++++.+.. +......+.... + ...-..+..++.++.||.|.-| |.+.+ .
T Consensus 226 llL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p~ 305 (733)
T COG4590 226 LLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQPH 305 (733)
T ss_pred hEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCCc
Confidence 556899999885555888888887653 222222221110 1 1112224448889999999887 55432 2
Q ss_pred --eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEe
Q 022324 225 --CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 225 --~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s 293 (299)
.++.++-...++..+.-..+ +-+++-+..|++..+..-..+.+ -++.... .+.-+++||++.+|++
T Consensus 306 l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~~~~~~--~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 306 LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL-LFERAYQ--APQLVAMSPNQAYLLS 374 (733)
T ss_pred ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce-ehhhhhc--CcceeeeCcccchhee
Confidence 12222222233443332233 56778888898888775433332 2222223 5677899999988875
No 446
>PRK10115 protease 2; Provisional
Probab=81.48 E-value=48 Score=31.19 Aligned_cols=104 Identities=4% Similarity=-0.151 Sum_probs=59.2
Q ss_pred EEEecCCCEEE-EEc-CC----eEEEEecCCceeeeeccCCccceeeeeccCCCeEEEecC-C-----CcEEEEEcCCc-
Q 022324 157 VDFDFDESKIV-GLI-GT----RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-D-----GTARVFDMYSR- 223 (299)
Q Consensus 157 ~~~~~~~~~l~-~~~-d~----~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-d-----~~i~iwd~~~~- 223 (299)
+.++|++++|+ +.. +| .+++.|+.++........+.. ..++|.+++..|+-... + ..|..+++.++
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence 78899999988 322 23 788999987753322222222 24688888877544332 2 35788888877
Q ss_pred -ceeeeccccCCcee-EEEeCCC-CeEEEEeC---CCcEEEEeC
Q 022324 224 -KCSQIIRMHCAPVT-SLSLSED-QLIISGSS---LGSIAISGL 261 (299)
Q Consensus 224 -~~~~~~~~~~~~i~-~~~~~~~-~~l~~~~~---dg~i~iwd~ 261 (299)
+....+........ .+..+.+ ++++..+. ++.+.+++.
T Consensus 211 ~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 211 SQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred hHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 33333432222222 3333434 54444333 457888884
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=81.27 E-value=48 Score=31.06 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=33.5
Q ss_pred CeEEEecCCCcEEEEEcCCc--c-eeeeccccCCceeEEEeCCC----C---eEEEEeCCCcEEEEeC
Q 022324 204 PEAVVGCEDGTARVFDMYSR--K-CSQIIRMHCAPVTSLSLSED----Q---LIISGSSLGSIAISGL 261 (299)
Q Consensus 204 ~~l~s~~~d~~i~iwd~~~~--~-~~~~~~~~~~~i~~~~~~~~----~---~l~~~~~dg~i~iwd~ 261 (299)
..+|+++....|.||-.... + ....-..+...|.+|+|-++ . .+++++-.|.+.+|++
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 33555555555555543321 1 11101125566888888753 2 6788888999988887
No 448
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.05 E-value=4.6 Score=21.34 Aligned_cols=19 Identities=5% Similarity=-0.075 Sum_probs=14.7
Q ss_pred cEEEEEccCCCCeEEeeec
Q 022324 278 HIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 278 ~i~~~~~s~~g~~l~s~s~ 296 (299)
.-....|||||++|+-++.
T Consensus 10 ~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEE
T ss_pred cccCEEEecCCCEEEEEec
Confidence 5678899999999887664
No 449
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.57 E-value=38 Score=29.53 Aligned_cols=174 Identities=10% Similarity=0.027 Sum_probs=75.4
Q ss_pred EEEEEe-CCCcEEEEecCC----ceeEEEecC---C-----CceeEEEEecCCCEEE---EEcCC----eEEEEecCCce
Q 022324 124 LILTGV-GDKVMRLWSLEG----YKCVEEYSL---P-----NAASLVDFDFDESKIV---GLIGT----RICIWRRNGLR 183 (299)
Q Consensus 124 ~l~s~~-~dg~i~iwd~~~----~~~~~~~~~---~-----~~~~~~~~~~~~~~l~---~~~d~----~i~v~d~~~~~ 183 (299)
+|+..+ ..+.|+|.|+.+ .+..+.++. . .....+..-|+|+.++ +..+| .+.++|-++..
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 666655 778999999873 345555552 1 1122355567887766 44333 56777766432
Q ss_pred e--eeeccCCccc--eeeeeccCCCeE--------------------EEecCCCcEEEEEcCCcceeeeccccC--Ccee
Q 022324 184 S--VFPSREGTFM--KGLCMRYFDPEA--------------------VVGCEDGTARVFDMYSRKCSQIIRMHC--APVT 237 (299)
Q Consensus 184 ~--~~~~~~~~~~--~~~~~~~~~~~l--------------------~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~i~ 237 (299)
. ......+... .-+.+.+..+.+ ..+....++.+||+.+.+.++++.-.. ..+.
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pL 248 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPL 248 (461)
T ss_dssp EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEE
T ss_pred ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceE
Confidence 1 1111111000 011222222222 223345789999999999999887332 3456
Q ss_pred EEEeC--CC-Ce-EEEEeCCCcEEEE-eCCCCc----eEEEeeccC--------C-------CCcEEEEEccCCCCeEEe
Q 022324 238 SLSLS--ED-QL-IISGSSLGSIAIS-GLSSDQ----RVATLRSTD--------C-------TGHIICLMYPQFLHMLFF 293 (299)
Q Consensus 238 ~~~~~--~~-~~-l~~~~~dg~i~iw-d~~~~~----~~~~~~~~~--------~-------~~~i~~~~~s~~g~~l~s 293 (299)
.+.|. |+ .+ ++.+--..+|..| ....++ .+..+.... . ..-|+.+..|.|.++|..
T Consensus 249 EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 249 EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 67775 44 33 3333334455444 333332 233332110 0 115799999999999999
Q ss_pred eecc
Q 022324 294 LCFL 297 (299)
Q Consensus 294 ~s~~ 297 (299)
++|.
T Consensus 329 s~W~ 332 (461)
T PF05694_consen 329 SNWL 332 (461)
T ss_dssp EETT
T ss_pred Eccc
Confidence 8874
No 450
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.49 E-value=49 Score=32.19 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=64.6
Q ss_pred EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCc-cceeeeeccCCCeEEEecCCCcEEE--EEcCCcceeeecc--c
Q 022324 157 VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMKGLCMRYFDPEAVVGCEDGTARV--FDMYSRKCSQIIR--M 231 (299)
Q Consensus 157 ~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~i--wd~~~~~~~~~~~--~ 231 (299)
.+..|-...+.++....+++||+...+...+..... ...+..+......++.|...-.+.+ |+....+. ..+. .
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fadD~ 1017 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQL-IVFADDP 1017 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeE-EEEeCCC
Confidence 667777777778999999999998775322222222 2224455556667888877666654 44443333 3332 3
Q ss_pred cCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022324 232 HCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (299)
Q Consensus 232 ~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (299)
-...|+++.+-....+|.+..=|.+.+-.+.
T Consensus 1018 ~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1018 VPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ccceeeEEEEecCCceeeccccCcEEEEECC
Confidence 3445666666554668888777777776553
No 451
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.32 E-value=23 Score=31.44 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=27.6
Q ss_pred ceeEEEeCCC----CeEEEEeCCCcEEEEeCCCCceEEEee
Q 022324 235 PVTSLSLSED----QLIISGSSLGSIAISGLSSDQRVATLR 271 (299)
Q Consensus 235 ~i~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (299)
.+..++|+|+ ..|..-+.|..|++||+.....+....
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 4567889986 468888889999999997665554433
No 452
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=80.10 E-value=32 Score=28.27 Aligned_cols=150 Identities=11% Similarity=0.006 Sum_probs=88.4
Q ss_pred cCeeEEEecCCEEEEEeCCCcEEEEecCCceeEEEec-CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCceee-eecc
Q 022324 113 VGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV-FPSR 189 (299)
Q Consensus 113 ~~i~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~-~~~~ 189 (299)
+-+..+.+..++...+.++.-+++.|+.+...-..+. .+..-..-.+.-.|++.. +..+.-+.+.|+.++... +...
T Consensus 87 ~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 87 DLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred hhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 3455567777888888899999999998754322221 122234555666788877 665777888898876421 1111
Q ss_pred C-CccceeeeeccCCCeEEEecCCCcEEEEEcCCcc---eeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022324 190 E-GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 190 ~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 264 (299)
. ........+.-.+++...+..|+-+.+.|+.... .+... .....+.++..+++ .+++.. ..| +.+-|..+.
T Consensus 167 ya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy-~eg-vlivd~s~~ 243 (370)
T COG5276 167 YALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVY-DEG-VLIVDVSGP 243 (370)
T ss_pred eccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEc-ccc-eEEEecCCC
Confidence 1 1111012344457776777788899999987543 22222 22336788888888 444433 233 556665543
Q ss_pred c
Q 022324 265 Q 265 (299)
Q Consensus 265 ~ 265 (299)
+
T Consensus 244 s 244 (370)
T COG5276 244 S 244 (370)
T ss_pred C
Confidence 3
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.72 E-value=14 Score=34.25 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=50.8
Q ss_pred CcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeec--cCCCCcEEEEEccCCCCe
Q 022324 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS--TDCTGHIICLMYPQFLHM 290 (299)
Q Consensus 213 ~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~g~~ 290 (299)
-.|+||+.. |..+..+.-....+-.+.|+.+..|++...+|++++|++. |+.+..... ......|..+.|..+|-.
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceE
Confidence 447788765 7777766544557899999999788999999999999985 544443211 110013555555445544
Q ss_pred EEe
Q 022324 291 LFF 293 (299)
Q Consensus 291 l~s 293 (299)
+.+
T Consensus 142 vlt 144 (829)
T KOG2280|consen 142 VLT 144 (829)
T ss_pred EEe
Confidence 443
No 454
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=78.35 E-value=68 Score=31.07 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=78.4
Q ss_pred CCcEEEEecCCce---eEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCcee-ee-eccCCccceeeeeccCCC
Q 022324 131 DKVMRLWSLEGYK---CVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRS-VF-PSREGTFMKGLCMRYFDP 204 (299)
Q Consensus 131 dg~i~iwd~~~~~---~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 204 (299)
.|.|.++.+..++ .+........+.. +.| +| .++++-+..|++|+..+.+. .. ..+..+.. ++.+.-.++
T Consensus 806 ~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ng-kllA~In~~vrLye~t~~~eLr~e~~~~~~~~-aL~l~v~gd 881 (1096)
T KOG1897|consen 806 NGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NG-KLLAGINQSVRLYEWTTERELRIECNISNPII-ALDLQVKGD 881 (1096)
T ss_pred cceEEEEEEecCCceeeeeeeeeccceeehhhh--CC-eEEEecCcEEEEEEccccceehhhhcccCCeE-EEEEEecCc
Confidence 5778888776632 2333333444444 222 33 45566778999999987742 22 22333322 556777788
Q ss_pred eEEEecCCCcEEEEEcC--Ccceeeecc-ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCC
Q 022324 205 EAVVGCEDGTARVFDMY--SRKCSQIIR-MHCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (299)
Q Consensus 205 ~l~s~~~d~~i~iwd~~--~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~ 262 (299)
.++.|.--+.+.+...+ .|.....-+ .+..+.+++.+-.+..++.+..+|.+.+-...
T Consensus 882 eI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 882 EIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 89999888887765544 333332222 56677888888777666677778888776543
No 455
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.20 E-value=47 Score=29.14 Aligned_cols=146 Identities=7% Similarity=0.026 Sum_probs=76.9
Q ss_pred eEEEecCC-EEEEEeCCCcEEEEecCC--ceeEEEe--cCCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce---eee
Q 022324 116 DQCRMKRG-LILTGVGDKVMRLWSLEG--YKCVEEY--SLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR---SVF 186 (299)
Q Consensus 116 ~~~~~~~~-~l~s~~~dg~i~iwd~~~--~~~~~~~--~~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~---~~~ 186 (299)
+.+.|.|. ..+.+...|.+.=|-+.. ....-.+ ...+++.++.|++|.+.++ --.+.+|.+++....+ ...
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 44666443 333333444444554432 1112222 2334566699999999999 7778999999985432 111
Q ss_pred eccCCcccee--eeeccCCCeEEEecCCCcEEEEEcCC-cceeeeccccCCceeEEEeCCC-CeE--EEEeCCCcEEEEe
Q 022324 187 PSREGTFMKG--LCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLI--ISGSSLGSIAISG 260 (299)
Q Consensus 187 ~~~~~~~~~~--~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l--~~~~~dg~i~iwd 260 (299)
..+......+ ++|..+ ..++.-... -+-+|-+.. ...++..+.++-.|+-..|+++ +.+ +++-..+++.=+-
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 1122222223 345443 234444433 355665543 2344555677778888888888 533 3332445444444
Q ss_pred CCC
Q 022324 261 LSS 263 (299)
Q Consensus 261 ~~~ 263 (299)
+++
T Consensus 184 ~~~ 186 (657)
T KOG2377|consen 184 FRA 186 (657)
T ss_pred Eee
Confidence 443
No 456
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=77.83 E-value=51 Score=29.40 Aligned_cols=148 Identities=10% Similarity=-0.002 Sum_probs=67.4
Q ss_pred EEEEE---eCCCcEEEEecCCceeEEEecCCCceeE-EEEecCCCEEEEEcCCeEEEEecCCceeeeeccCCcc---cee
Q 022324 124 LILTG---VGDKVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTF---MKG 196 (299)
Q Consensus 124 ~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~ 196 (299)
++++. ...+...+.|.+ |.....+........ +..-++|.++++.. ..+..+|..+.........+.. ..-
T Consensus 117 ~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HHD 194 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHHD 194 (477)
T ss_dssp EEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S-
T ss_pred EEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCcccccccc
Confidence 55555 345566667754 666555553322222 56678888877444 7777777765531111111100 111
Q ss_pred eeeccCCCeEEEecC-------------CCcEEEEEcCCcceeeecc--cc-------------------------CCce
Q 022324 197 LCMRYFDPEAVVGCE-------------DGTARVFDMYSRKCSQIIR--MH-------------------------CAPV 236 (299)
Q Consensus 197 ~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~~~~~~~~--~~-------------------------~~~i 236 (299)
+..-+++..|+.+.. ...|..+| .+|+.+..+. .| ---+
T Consensus 195 ~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~ 273 (477)
T PF05935_consen 195 IDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHI 273 (477)
T ss_dssp EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--E
T ss_pred cEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcccc
Confidence 234455555444331 11244445 4555444332 00 0247
Q ss_pred eEEEeCC-C-CeEEEEeCCCcEEEEeCCCCceEEEeeccC
Q 022324 237 TSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTD 274 (299)
Q Consensus 237 ~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 274 (299)
+++.+.+ + .+++++-.-..|...|.++++....+..+.
T Consensus 274 Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 274 NSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 8899988 4 555555556689999988888877776543
No 457
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=77.49 E-value=35 Score=27.34 Aligned_cols=145 Identities=10% Similarity=0.018 Sum_probs=69.6
Q ss_pred cCCCceeE-EEEecCCCEEE--EEcCCeEEEEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc
Q 022324 149 SLPNAASL-VDFDFDESKIV--GLIGTRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224 (299)
Q Consensus 149 ~~~~~~~~-~~~~~~~~~l~--~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 224 (299)
.+-...++ ++++|+.+.|+ ....+.|..++..+.. ..+......-.-.+++.-++.++++--.++.+.++++....
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 33333355 99999887766 4445677777765432 11111111112233444444445544458889888884321
Q ss_pred ------eeeecc-----ccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCC---CceEEEe--eccC----CCCcEEEEE
Q 022324 225 ------CSQIIR-----MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS---DQRVATL--RSTD----CTGHIICLM 283 (299)
Q Consensus 225 ------~~~~~~-----~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~---~~~~~~~--~~~~----~~~~i~~~~ 283 (299)
....+. .++..+-.++|++. +.|+.+-+..-..+|.++. ...+... .... ....+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 111221 24455889999997 7777777777777777653 2222111 1100 112578888
Q ss_pred ccCCC-CeEEe
Q 022324 284 YPQFL-HMLFF 293 (299)
Q Consensus 284 ~s~~g-~~l~s 293 (299)
++|.. .+++.
T Consensus 178 ~~p~t~~lliL 188 (248)
T PF06977_consen 178 YDPRTGHLLIL 188 (248)
T ss_dssp EETTTTEEEEE
T ss_pred EcCCCCeEEEE
Confidence 88854 44443
No 458
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=77.48 E-value=4.3 Score=36.75 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=23.6
Q ss_pred EEEEEeCCCcEEEEecCCceeEEEec
Q 022324 124 LILTGVGDKVMRLWSLEGYKCVEEYS 149 (299)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~ 149 (299)
+|++.+.|+++|+||+.+++++.+..
T Consensus 232 ~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 232 FLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEec
Confidence 99999999999999999999976653
No 459
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.86 E-value=72 Score=31.89 Aligned_cols=138 Identities=13% Similarity=0.122 Sum_probs=75.6
Q ss_pred EEEEeCCCcEEEEecCCceeEEEecCCCcee-EEE-EecCC-------CEEE-EEcCCeEEEEecCCc-----eeeee--
Q 022324 125 ILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS-LVD-FDFDE-------SKIV-GLIGTRICIWRRNGL-----RSVFP-- 187 (299)
Q Consensus 125 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~-~~~~~-------~~l~-~~~d~~i~v~d~~~~-----~~~~~-- 187 (299)
-+-.+-|..+.+|+.+++.....+.+-+..+ .+. +.|.. +++. .+.--.|.++-+.-. ...+.
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence 3445678899999999877666666443322 232 22322 3333 444455555544211 11111
Q ss_pred --ccCCccceeeeec-cCCCeEEEecCCCcEE--EEEcCCc---c--------------e---eeecc-ccCCceeEEEe
Q 022324 188 --SREGTFMKGLCMR-YFDPEAVVGCEDGTAR--VFDMYSR---K--------------C---SQIIR-MHCAPVTSLSL 241 (299)
Q Consensus 188 --~~~~~~~~~~~~~-~~~~~l~s~~~d~~i~--iwd~~~~---~--------------~---~~~~~-~~~~~i~~~~~ 241 (299)
..... ..+.|+. -.+..++-++.||.+. +|...++ + . +..+. .+.++|..++.
T Consensus 172 ~~i~~dg-~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 172 FKISVDG-VSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eeeecCC-ceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 11211 1133443 3334456666677543 2222221 1 0 11112 45679999999
Q ss_pred CCC-CeEEEEeCCCcEEEEeCCC
Q 022324 242 SED-QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 242 ~~~-~~l~~~~~dg~i~iwd~~~ 263 (299)
... +.+.+-+..|+|.+||+..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 888 8899999999999999965
No 460
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=75.26 E-value=27 Score=24.89 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=39.9
Q ss_pred EEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeC---CC-CeEEEEeCCCcEEEEeCCCCceEEEe
Q 022324 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS---ED-QLIISGSSLGSIAISGLSSDQRVATL 270 (299)
Q Consensus 206 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 270 (299)
|+.|+ ...+..||+.....+..-.. .+.++++.+- .. .-++..+.+..|.-||..-.+...+.
T Consensus 67 LliGt-~t~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 67 LLIGT-QTSLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEec-cceEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 55555 56788999987665543323 3557777663 22 34555555788999998755655554
No 461
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=38 Score=26.35 Aligned_cols=93 Identities=9% Similarity=0.026 Sum_probs=54.9
Q ss_pred CCeEEEEecCCceeeeeccCCc-cceeeeeccCCCeE-EEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEE
Q 022324 171 GTRICIWRRNGLRSVFPSREGT-FMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLII 248 (299)
Q Consensus 171 d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 248 (299)
...|++||+.+++.++...-.. ....-.+...++.+ .-.-.+|....+|.++.+++..+. ..+.=+.++....+ |+
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt~d~~~-Li 144 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLTSDDKN-LI 144 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeeecCCcc-eE
Confidence 4489999999887555443321 11111223334443 234567888899999988887774 34445666543334 55
Q ss_pred EEeCCCcEEEEeCCCCc
Q 022324 249 SGSSLGSIAISGLSSDQ 265 (299)
Q Consensus 249 ~~~~dg~i~iwd~~~~~ 265 (299)
.+....+++.-|..+-.
T Consensus 145 msdGsatL~frdP~tfa 161 (262)
T COG3823 145 MSDGSATLQFRDPKTFA 161 (262)
T ss_pred eeCCceEEEecCHHHhh
Confidence 65556667776765543
No 462
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=74.35 E-value=91 Score=30.54 Aligned_cols=158 Identities=12% Similarity=0.099 Sum_probs=85.0
Q ss_pred cEEEEecCCceeEEEecCCCc-----eeEEEEecCCCE--EE-EE-----------cCCeEEEEecCCc-e-eeeeccCC
Q 022324 133 VMRLWSLEGYKCVEEYSLPNA-----ASLVDFDFDESK--IV-GL-----------IGTRICIWRRNGL-R-SVFPSREG 191 (299)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--l~-~~-----------~d~~i~v~d~~~~-~-~~~~~~~~ 191 (299)
.|++.|..+++.+..+..... +..+.|+..+.. ++ +. .+|.++.|++-.. . ..+-....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 488888888877666654322 122455443332 22 22 2345777776432 2 22222222
Q ss_pred ccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc--ccCCceeEEEeCCCCeEEEEeCCCcEEE--EeCCCCceE
Q 022324 192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSEDQLIISGSSLGSIAI--SGLSSDQRV 267 (299)
Q Consensus 192 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~l~~~~~dg~i~i--wd~~~~~~~ 267 (299)
-...+.++.+...++++|- ...+++||+...+.++... .-...|+.+++... .+++|....++.+ |+...+ .+
T Consensus 934 ~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~-RI~VgD~qeSV~~~~y~~~~n-~l 1010 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGA-RIVVGDIQESVHFVRYRREDN-QL 1010 (1205)
T ss_pred CCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhhccCceEEEEEeecce-EEEEeeccceEEEEEEecCCC-eE
Confidence 2333568888888766554 5689999999877665443 23456777776544 4666665555554 444333 34
Q ss_pred EEeeccCCCCcEEEEEccCCCCeEEee
Q 022324 268 ATLRSTDCTGHIICLMYPQFLHMLFFL 294 (299)
Q Consensus 268 ~~~~~~~~~~~i~~~~~s~~g~~l~s~ 294 (299)
..+-...-...|+++.+- |...+|.|
T Consensus 1011 ~~fadD~~pR~Vt~~~~l-D~~tvaga 1036 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELL-DYDTVAGA 1036 (1205)
T ss_pred EEEeCCCccceeeEEEEe-cCCceeec
Confidence 444333322256665554 33334443
No 463
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=73.68 E-value=51 Score=27.35 Aligned_cols=139 Identities=6% Similarity=0.009 Sum_probs=67.9
Q ss_pred eeEEEEecCCCEEEEEcCCeEE-EEecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEE-cCCccee----
Q 022324 154 ASLVDFDFDESKIVGLIGTRIC-IWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD-MYSRKCS---- 226 (299)
Q Consensus 154 ~~~~~~~~~~~~l~~~~d~~i~-v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~---- 226 (299)
...+..++++++++.+..|.++ -||..... .............+.+.+++...+ ....|.|+.=+ ....+.-
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~ 225 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPI 225 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B
T ss_pred eEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCcccccccc
Confidence 3347778999999866666654 66655432 233333333344567777755434 44788888776 2222221
Q ss_pred eeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeeccC-CCCcEEEEEccCCCCeEEeee
Q 022324 227 QIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTD-CTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~s~s 295 (299)
..+......+..+++.++ ...++|+ .|.+ +.....|+.-+..+... -...++.+.|.+..+-++.|.
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 112123344899999988 6555554 5544 44555566555554321 111588888877767666653
No 464
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=73.62 E-value=50 Score=27.20 Aligned_cols=134 Identities=13% Similarity=-0.012 Sum_probs=77.2
Q ss_pred EEEecCCCEEE-EEcCCeEEEEecCCceeee-eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc---eeeeccc
Q 022324 157 VDFDFDESKIV-GLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRM 231 (299)
Q Consensus 157 ~~~~~~~~~l~-~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~ 231 (299)
+.++ ++++. +-.+.-+++.|+.++.... ...-.-.....++.-.+++...+.-|.-+.+.|+.+.+ ....+..
T Consensus 92 v~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~ 169 (370)
T COG5276 92 VRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL 169 (370)
T ss_pred eEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc
Confidence 4443 45555 7777789999998875221 11111111234666778887777755556678876543 2223323
Q ss_pred cCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCC-cEEEEEccCCCCeEEee
Q 022324 232 HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG-HIICLMYPQFLHMLFFL 294 (299)
Q Consensus 232 ~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~s~ 294 (299)
....-..++.+-+ +-..+..|+-+.+-|+.+...- .+.++.+.+ .+.++..+++..+++..
T Consensus 170 ~~~d~~~v~ISGn-~AYvA~~d~GL~ivDVSnp~sP-vli~~~n~g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 170 PGGDTHDVAISGN-YAYVAWRDGGLTIVDVSNPHSP-VLIGSYNTGPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred CCCCceeEEEecC-eEEEEEeCCCeEEEEccCCCCC-eEEEEEecCCceEEEEecCCeeEEEEc
Confidence 3333456666554 4555667888999999754321 122222111 68888888887777653
No 465
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=73.38 E-value=59 Score=27.94 Aligned_cols=132 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred ecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCe--EEEecCC----CcEEEEEcC-Ccceeeec
Q 022324 160 DFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPE--AVVGCED----GTARVFDMY-SRKCSQII 229 (299)
Q Consensus 160 ~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--l~s~~~d----~~i~iwd~~-~~~~~~~~ 229 (299)
+|...+++ ...++-+.+||+.... ..-....+.+--.-.+.-.+.. |+.++.- ..|++|-+. ....+..+
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Q ss_pred cccCCce---------eEEEeCCC---CeEEEEeCCCcEEEEeCC-------CCceEEEeeccCCCCcEEEEEccCCCCe
Q 022324 230 RMHCAPV---------TSLSLSED---QLIISGSSLGSIAISGLS-------SDQRVATLRSTDCTGHIICLMYPQFLHM 290 (299)
Q Consensus 230 ~~~~~~i---------~~~~~~~~---~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~i~~~~~s~~g~~ 290 (299)
.....++ .|+--++. -+.+....+|.+..|-+. ++++++++.... .+-.|..+....+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s---Q~EGCVVDDe~g~ 221 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS---QPEGCVVDDETGR 221 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS----EEEEEEETTTTE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC---cceEEEEecccCC
Q ss_pred EEee
Q 022324 291 LFFL 294 (299)
Q Consensus 291 l~s~ 294 (299)
|..|
T Consensus 222 LYvg 225 (381)
T PF02333_consen 222 LYVG 225 (381)
T ss_dssp EEEE
T ss_pred EEEe
No 466
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=72.76 E-value=11 Score=30.23 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=43.6
Q ss_pred CcchhccCcHHHHHHHhhcc-CccchhhHHHhhhhHHHHhhhhhHHHHHHhhh
Q 022324 20 PRATIESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKL 71 (299)
Q Consensus 20 ~~~~~~~~~~~~~~~i~~~~-~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~ 71 (299)
..-++..+|.+....|+-.+ +|.+++....+.+.-..+....++|+.+|..-
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfH 250 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFH 250 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999998777655 89999999999999999999899999977553
No 467
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.75 E-value=63 Score=28.04 Aligned_cols=136 Identities=6% Similarity=-0.037 Sum_probs=69.9
Q ss_pred EEEecCCCEEEEEcCCeEEE-EecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcc-----eeeec
Q 022324 157 VDFDFDESKIVGLIGTRICI-WRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-----CSQII 229 (299)
Q Consensus 157 ~~~~~~~~~l~~~~d~~i~v-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~ 229 (299)
+...+++.+++.+..|.+.. ||-.... .............+.+.+++..++ .+.+|.+ ++....++ .....
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l-~g~~G~l-~~S~d~G~~~~~~~f~~~ 321 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWL-LTRGGGL-YVSKGTGLTEEDFDFEEA 321 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEE-EeCCceE-EEecCCCCcccccceeec
Confidence 44567777777555555443 3332221 112222222222334555555444 4455654 33444443 12222
Q ss_pred cc--cCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccC-CCCcEEEEEccCCCCeEEeee
Q 022324 230 RM--HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD-CTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 230 ~~--~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~s~s 295 (299)
.. ....+.++.+.++..++.++..|.+.... ..|+.-....... -....+.+.|.++++.+++|.
T Consensus 322 ~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 322 DIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred ccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 21 22358889998885566666788666554 4455544433111 112688999988888777763
No 468
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=71.78 E-value=39 Score=25.23 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=24.9
Q ss_pred CceeEEEeCCC-------CeEEEEeCCCcEEEEeCCC
Q 022324 234 APVTSLSLSED-------QLIISGSSLGSIAISGLSS 263 (299)
Q Consensus 234 ~~i~~~~~~~~-------~~l~~~~~dg~i~iwd~~~ 263 (299)
..+..++|+|- -+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 36899999982 2799999999999998763
No 469
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=71.03 E-value=5.5 Score=32.69 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=42.5
Q ss_pred hhccCcHHHHHHHhhc-----cCccchhhHHHhhhhHHHHhhhhhHHHHHHhhhc
Q 022324 23 TIESLNGDIICMIFSS-----LGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (299)
Q Consensus 23 ~~~~~~~~~~~~i~~~-----~~h~~~v~~~~~~~~~~~l~~~~~~w~~~~~~~~ 72 (299)
.|..||.|++..|+.. ++-.++.++..+|+.+...+-...+|+..|.+.+
T Consensus 106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW 160 (366)
T KOG2997|consen 106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVW 160 (366)
T ss_pred hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHH
Confidence 3678999999988754 4568899999999999999999999999888764
No 470
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=70.29 E-value=14 Score=19.57 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=8.6
Q ss_pred EEcCCeEEEEecC
Q 022324 168 GLIGTRICIWRRN 180 (299)
Q Consensus 168 ~~~d~~i~v~d~~ 180 (299)
++.||.++.+|.+
T Consensus 27 ~~~dg~l~ald~~ 39 (40)
T PF13570_consen 27 GTGDGNLYALDAA 39 (40)
T ss_dssp E-TTSEEEEEETT
T ss_pred EcCCCEEEEEeCC
Confidence 7777777777764
No 471
>PLN02153 epithiospecifier protein
Probab=69.97 E-value=66 Score=27.07 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=15.3
Q ss_pred ecCCEEEEEeCC-----CcEEEEecCCceeE
Q 022324 120 MKRGLILTGVGD-----KVMRLWSLEGYKCV 145 (299)
Q Consensus 120 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~ 145 (299)
+.+.+++.|+.+ ..+.+||..+.+..
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 344455556543 25778888776543
No 472
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=67.72 E-value=13 Score=18.13 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=20.0
Q ss_pred CeeEEEecCCEEEEEeCCCcEEEEe
Q 022324 114 GVDQCRMKRGLILTGVGDKVMRLWS 138 (299)
Q Consensus 114 ~i~~~~~~~~~l~s~~~dg~i~iwd 138 (299)
.|.+++..+++++.+..-+.+++|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 5777788778888888888888873
No 473
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=67.65 E-value=34 Score=28.44 Aligned_cols=71 Identities=13% Similarity=0.013 Sum_probs=45.5
Q ss_pred EEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCCCcEEEEEccCCCCeEEeee
Q 022324 217 VFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 217 iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
++|+.+++.+..= -....+-.|+.+++.++-+..|.+.-+|..+|+......... ...+++|. |.++++|-
T Consensus 189 vidv~s~evl~~G---LsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG---~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 189 VIDIPSGEVVASG---LSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG---FTRGLAFA--GDFAFVGL 259 (335)
T ss_pred EEEeCCCCEEEcC---ccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCC---CCccccee--CCEEEEEe
Confidence 4566666554221 111223345556788888999999999998786544433332 57888997 88887764
No 474
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=66.21 E-value=16 Score=23.94 Aligned_cols=43 Identities=14% Similarity=-0.036 Sum_probs=25.5
Q ss_pred EEEeCCCcEEEEecCCceeEEEecCCCceeEEEEecCCCEEEE
Q 022324 126 LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG 168 (299)
Q Consensus 126 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 168 (299)
+.+..+|.+..||..+++..-.+.+-..+.-+++++|+..++.
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv 73 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLV 73 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEE
Confidence 3445667788888888776544444344455888888887663
No 475
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=65.62 E-value=19 Score=33.45 Aligned_cols=75 Identities=9% Similarity=0.010 Sum_probs=44.5
Q ss_pred CCCceeEEEEecCCCEEE-EEcCCeEEEEecCCce--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCccee
Q 022324 150 LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226 (299)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 226 (299)
.....+.+.-+|.+..++ +..||+|.+|+..... .+......... +.+.+..+++...|..+.-|.-. |-..
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~n----lv~tnhgl~~~tsdrr~la~~~d-gvvq 87 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKEN----LVFTNHGLVTATSDRRALAWKED-GVVQ 87 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccc----eeeeccceEEEeccchhheeecc-Ccch
Confidence 334455577789998888 9999999999986543 22222211111 12234446777777777777533 4333
Q ss_pred eec
Q 022324 227 QII 229 (299)
Q Consensus 227 ~~~ 229 (299)
+.|
T Consensus 88 qqf 90 (1636)
T KOG3616|consen 88 QQF 90 (1636)
T ss_pred hhc
Confidence 333
No 476
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=65.50 E-value=22 Score=33.38 Aligned_cols=127 Identities=16% Similarity=0.079 Sum_probs=72.2
Q ss_pred CEEEEEcCCeEEEEecCCc-e--eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCC-----cceeeeccccCCc
Q 022324 164 SKIVGLIGTRICIWRRNGL-R--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-----RKCSQIIRMHCAP 235 (299)
Q Consensus 164 ~~l~~~~d~~i~v~d~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~~ 235 (299)
...+++.++.+.++..... . ............+.++.+....+..|.-||++-.|-... +++-..+.....+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~lP 628 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSLP 628 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccccCCcc
Confidence 3344888999999887622 1 122222222222445555555566677777765543221 1122222334567
Q ss_pred eeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccCCC-CcEEEEEccCCCCeEE
Q 022324 236 VTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT-GHIICLMYPQFLHMLF 292 (299)
Q Consensus 236 i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~ 292 (299)
+.+.++..| ++.++.+|.+.++...+.........|... ..|+++...-+|-+++
T Consensus 629 vrsla~~ed--~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwva 684 (925)
T KOG3522|consen 629 VRSLAFQED--FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVA 684 (925)
T ss_pred ccchhhhhc--eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEE
Confidence 777777665 566778999999998775544444333211 1688888776665544
No 477
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.80 E-value=90 Score=28.05 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=41.7
Q ss_pred EEEecCCCEEE-EEcCCeEEEEecC---------Cce------------eeeeccCCccceeeeeccCC---CeEEEecC
Q 022324 157 VDFDFDESKIV-GLIGTRICIWRRN---------GLR------------SVFPSREGTFMKGLCMRYFD---PEAVVGCE 211 (299)
Q Consensus 157 ~~~~~~~~~l~-~~~d~~i~v~d~~---------~~~------------~~~~~~~~~~~~~~~~~~~~---~~l~s~~~ 211 (299)
+..++.|..++ ++.+|.+.++=.+ .++ ..+.....-.....+|+|++ +.+..-..
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 66788999988 8888866665321 111 11111111111235788875 45778888
Q ss_pred CCcEEEEEcCCcc
Q 022324 212 DGTARVFDMYSRK 224 (299)
Q Consensus 212 d~~i~iwd~~~~~ 224 (299)
|+.|++||...-.
T Consensus 189 dnviRiy~lS~~t 201 (741)
T KOG4460|consen 189 DNVIRIYSLSEPT 201 (741)
T ss_pred CcEEEEEecCCcc
Confidence 9999999987533
No 478
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=61.66 E-value=90 Score=25.67 Aligned_cols=85 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred cEEEEEcCCcceeeecc------ccCCceeEEEeCCC-C------eEEEEeCCCcEEEEeCCCCceEEEeeccCCC----
Q 022324 214 TARVFDMYSRKCSQIIR------MHCAPVTSLSLSED-Q------LIISGSSLGSIAISGLSSDQRVATLRSTDCT---- 276 (299)
Q Consensus 214 ~i~iwd~~~~~~~~~~~------~~~~~i~~~~~~~~-~------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---- 276 (299)
+|.+||+.+.+.++.+. ...+.+..+.+... . ..++=+..+.|.|+|+.+++.-+.+..+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred -------------CcEEEEEccC---CCCeEEeeeccc
Q 022324 277 -------------GHIICLMYPQ---FLHMLFFLCFLP 298 (299)
Q Consensus 277 -------------~~i~~~~~s~---~g~~l~s~s~~~ 298 (299)
..+.+++.+| +|+.|.-+.+-+
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss 152 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS 152 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC
No 479
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=60.37 E-value=49 Score=31.24 Aligned_cols=89 Identities=6% Similarity=-0.119 Sum_probs=45.1
Q ss_pred eeeeccCCCeEEEecCCCc-----EEEEEcCCcceeeecc---ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceE
Q 022324 196 GLCMRYFDPEAVVGCEDGT-----ARVFDMYSRKCSQIIR---MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRV 267 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 267 (299)
.++|.|.|..+++-+.||. |.++.. +|-....+. +.......++|+-...+......+.|++|-..+..-.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWY 329 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWY 329 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEE
Confidence 5689999999888664443 444432 222222221 2233455566654422233344567999987654322
Q ss_pred EEeeccCCCCcEEEEEccCC
Q 022324 268 ATLRSTDCTGHIICLMYPQF 287 (299)
Q Consensus 268 ~~~~~~~~~~~i~~~~~s~~ 287 (299)
-.....-. .+.-+.|+|.
T Consensus 330 LK~e~~ip--~~s~vkwhpe 347 (1243)
T COG5290 330 LKVERQIP--GISYVKWHPE 347 (1243)
T ss_pred EEEeecCC--Ccceeeeccc
Confidence 11111111 4555677764
No 480
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=58.61 E-value=1.2e+02 Score=26.29 Aligned_cols=107 Identities=14% Similarity=0.003 Sum_probs=54.8
Q ss_pred CceeEEEEecCCCEEEEEcCCeEEEEecCCce-e--eeeccCC--ccceeeeeccC-CCeEEEecCCCcEEEEEcCCcce
Q 022324 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLR-S--VFPSREG--TFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKC 225 (299)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~~-~--~~~~~~~--~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~ 225 (299)
.....+.+.+++..++++.+|.+..-+-.... . .+..... ....+..+.+. +..++.++..|.+..-. ..++.
T Consensus 281 ~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~t 359 (398)
T PLN00033 281 RRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKS 359 (398)
T ss_pred cceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcc
Confidence 34445888889988887788877654333221 0 1221111 11112333333 33366666777665543 33333
Q ss_pred eeec---cccCCceeEEEeCCCCeEEEEeCCCcEEEE
Q 022324 226 SQII---RMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (299)
Q Consensus 226 ~~~~---~~~~~~i~~~~~~~~~~l~~~~~dg~i~iw 259 (299)
=... ..-......+.|.+++.....+.+|.|.-|
T Consensus 360 W~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 360 WKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 1111 122456788998776444455557766443
No 481
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=58.03 E-value=1.6e+02 Score=27.47 Aligned_cols=157 Identities=10% Similarity=0.074 Sum_probs=79.9
Q ss_pred ccCeeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEE--EecCCCce-eE-EEEec-----C-CCEEE-EEc-C-C--eE
Q 022324 112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVE--EYSLPNAA-SL-VDFDF-----D-ESKIV-GLI-G-T--RI 174 (299)
Q Consensus 112 ~~~i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~-~~-~~~~~-----~-~~~l~-~~~-d-~--~i 174 (299)
.+.|..+.+ +++ .++..-.+|.|.+||...+.... ........ +. -.|-+ + ..+++ .+. + . ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 567888887 355 89999999999999994332221 22211111 11 11111 1 23333 333 2 2 56
Q ss_pred EEEecCCc-eeeeec----cCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecccc-------CCceeEEEeC
Q 022324 175 CIWRRNGL-RSVFPS----REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-------CAPVTSLSLS 242 (299)
Q Consensus 175 ~v~d~~~~-~~~~~~----~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~~ 242 (299)
+++.+... ...+.. .......-..+++....++-- .++.|.+|++.+.+...++.-. ...|.-...+
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Confidence 77777221 111111 111111112344444444433 6778999999877666555411 1223333333
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceEEEee
Q 022324 243 EDQLIISGSSLGSIAISGLSSDQRVATLR 271 (299)
Q Consensus 243 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 271 (299)
+++.|++. ++.|++.|+.-...+.++.
T Consensus 288 ~nRvLLs~--~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 288 PNRVLLSV--NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCeEEEEc--CCEEEEEeehhhhhhhhhh
Confidence 44555543 5789999987555444443
No 482
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=57.90 E-value=1.1e+02 Score=25.24 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=45.4
Q ss_pred CCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe------CCCcEEEEeCCCCceEEEeeccC---CCCcEEE
Q 022324 212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS------SLGSIAISGLSSDQRVATLRSTD---CTGHIIC 281 (299)
Q Consensus 212 d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~---~~~~i~~ 281 (299)
-..|.+||..+.+=...-..-.+.|+++.|..+ ++++.|. ....+..||..+.. ...+.... -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 445889997754432222234678999999866 7777764 35578899987654 33443311 1127888
Q ss_pred EEcc
Q 022324 282 LMYP 285 (299)
Q Consensus 282 ~~~s 285 (299)
+.+.
T Consensus 94 ~~~~ 97 (281)
T PF12768_consen 94 LTFI 97 (281)
T ss_pred EEee
Confidence 7774
No 483
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=56.27 E-value=95 Score=24.24 Aligned_cols=46 Identities=9% Similarity=0.111 Sum_probs=34.8
Q ss_pred CEEEEEeCCCcEEEEecC--CceeEEEecCCCceeEEEEecCCCEEEE
Q 022324 123 GLILTGVGDKVMRLWSLE--GYKCVEEYSLPNAASLVDFDFDESKIVG 168 (299)
Q Consensus 123 ~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 168 (299)
+.|+.+.....|.+|++. ..+....|..-+.+..+..+..|++++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVT 76 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEE
Confidence 444444667789999987 4456677777777888999999999884
No 484
>PLN02193 nitrile-specifier protein
Probab=55.30 E-value=1.5e+02 Score=26.35 Aligned_cols=141 Identities=11% Similarity=-0.024 Sum_probs=66.8
Q ss_pred EEEEEeCC-----CcEEEEecCCceeEEEecC---CCceeE-EEEecCCCEEE-EEcC-----CeEEEEecCCceee-ee
Q 022324 124 LILTGVGD-----KVMRLWSLEGYKCVEEYSL---PNAASL-VDFDFDESKIV-GLIG-----TRICIWRRNGLRSV-FP 187 (299)
Q Consensus 124 ~l~s~~~d-----g~i~iwd~~~~~~~~~~~~---~~~~~~-~~~~~~~~~l~-~~~d-----~~i~v~d~~~~~~~-~~ 187 (299)
+.+.|+.+ ..+..+|+.+.+....-.. +.+... .+..-++++.+ ++.+ ..+..||+.+..-. ..
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 310 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCS 310 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCC
Confidence 55556554 3577888887654432111 111111 12223444444 5443 25778888776421 11
Q ss_pred cc----CCccceeeeeccCCCeEEEecCC----CcEEEEEcCCcce--eeecc--ccCCceeEEEeCCCCeEEEEeCC--
Q 022324 188 SR----EGTFMKGLCMRYFDPEAVVGCED----GTARVFDMYSRKC--SQIIR--MHCAPVTSLSLSEDQLIISGSSL-- 253 (299)
Q Consensus 188 ~~----~~~~~~~~~~~~~~~~l~s~~~d----~~i~iwd~~~~~~--~~~~~--~~~~~i~~~~~~~~~~l~~~~~d-- 253 (299)
.. ..... ..+....+..++.++.+ ..+.+||+.+.+= +.... .......+++...+++++.|+.+
T Consensus 311 ~~~~~~~~R~~-~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~ 389 (470)
T PLN02193 311 TPGDSFSIRGG-AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAM 389 (470)
T ss_pred CCCCCCCCCCC-cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCC
Confidence 10 00111 11222345555566654 4588999886532 22110 11111222333334677777753
Q ss_pred ------------CcEEEEeCCCCc
Q 022324 254 ------------GSIAISGLSSDQ 265 (299)
Q Consensus 254 ------------g~i~iwd~~~~~ 265 (299)
..+.++|+.+.+
T Consensus 390 ~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 390 DPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred ccccccCccceeccEEEEEcCcCE
Confidence 247888987764
No 485
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=55.29 E-value=1.3e+02 Score=25.37 Aligned_cols=12 Identities=0% Similarity=0.041 Sum_probs=9.1
Q ss_pred CeEEEEecCCce
Q 022324 172 TRICIWRRNGLR 183 (299)
Q Consensus 172 ~~i~v~d~~~~~ 183 (299)
..+.+||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 468889988764
No 486
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=55.09 E-value=1.3e+02 Score=25.27 Aligned_cols=83 Identities=16% Similarity=0.070 Sum_probs=52.7
Q ss_pred eEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCCCeEEEEeC--------------------CCcEEEEeCCCC
Q 022324 205 EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSS--------------------LGSIAISGLSSD 264 (299)
Q Consensus 205 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~ 264 (299)
..++-+..|.+..+|.++|+...... -.+....++|. +.++++|.+ ..-|.+.|+++|
T Consensus 215 LwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~-G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG 292 (335)
T TIGR03032 215 LWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA-GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSG 292 (335)
T ss_pred EEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee-CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCC
Confidence 35566677888888887775433321 23345566665 334433322 134889999999
Q ss_pred ceEEEeeccCCCCcEEEEEccCCCC
Q 022324 265 QRVATLRSTDCTGHIICLMYPQFLH 289 (299)
Q Consensus 265 ~~~~~~~~~~~~~~i~~~~~s~~g~ 289 (299)
+.+..++-...-..+..++.-|+=+
T Consensus 293 ~vv~~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 293 DVVHWLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred CEEEEEEeCCceeEEEEEEEecCCC
Confidence 9988877655444788888888633
No 487
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=54.92 E-value=1.3e+02 Score=28.67 Aligned_cols=62 Identities=13% Similarity=-0.002 Sum_probs=39.5
Q ss_pred EEEecCCCcEEEEEcCCcceeeecc---ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceE
Q 022324 206 AVVGCEDGTARVFDMYSRKCSQIIR---MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRV 267 (299)
Q Consensus 206 l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 267 (299)
++.++.+|.|.++...+........ .|...|+++.+......++=.....+++++..+-...
T Consensus 638 ~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~hl 702 (925)
T KOG3522|consen 638 FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLWHL 702 (925)
T ss_pred eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccCCc
Confidence 5668889999999987755444433 4556799998887644333333344666665554433
No 488
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=54.21 E-value=1.3e+02 Score=25.26 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=49.1
Q ss_pred eeeeccCCCeEEEecCCCcEEEEEcCCcce---eeec----cccCCceeEEEeCCC----CeEEEEeC-C--------Cc
Q 022324 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQII----RMHCAPVTSLSLSED----QLIISGSS-L--------GS 255 (299)
Q Consensus 196 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~----~~~~~~i~~~~~~~~----~~l~~~~~-d--------g~ 255 (299)
.+++.|++..++ +...|.|++++ ..+.. +..+ .........++++|+ .+|.+... . ..
T Consensus 6 ~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 6 SMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred EEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 467778765544 45589999998 33332 2222 133456789999984 23322222 1 13
Q ss_pred EEEEeCCCC-------c-eEEEeec-cCCCCcEEEEEccCCCCeEEeee
Q 022324 256 IAISGLSSD-------Q-RVATLRS-TDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 256 i~iwd~~~~-------~-~~~~~~~-~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
|.-|....+ + .+..+.. ......-..|+|.|||.+.++.+
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 333433322 1 1222222 01111567899999997766654
No 489
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.12 E-value=1.2e+02 Score=24.86 Aligned_cols=96 Identities=7% Similarity=-0.018 Sum_probs=50.1
Q ss_pred CcEEEEecCCceeEEEecCCC-ceeEEEEecCCCEEE-EE------cCCeEEEEecCCcee-eeec-----cCCccceee
Q 022324 132 KVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GL------IGTRICIWRRNGLRS-VFPS-----REGTFMKGL 197 (299)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~------~d~~i~v~d~~~~~~-~~~~-----~~~~~~~~~ 197 (299)
..|++||..+.+...--..-. .+..+.|..+.++++ |. ....+..||..+..- .+.. ..+.+....
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 468899988766544333222 334488876666666 32 244788899887752 2222 123332222
Q ss_pred eeccCCCeEE-Eec---CCCcEEEEEcCCcceee
Q 022324 198 CMRYFDPEAV-VGC---EDGTARVFDMYSRKCSQ 227 (299)
Q Consensus 198 ~~~~~~~~l~-s~~---~d~~i~iwd~~~~~~~~ 227 (299)
....+...+. +|. .+..|..||-.+...+.
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~ 129 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG 129 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceEecc
Confidence 2222333343 222 24457778766554443
No 490
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=53.80 E-value=59 Score=21.13 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=32.2
Q ss_pred cCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEe-CCCcEEEEeCCC
Q 022324 210 CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSS 263 (299)
Q Consensus 210 ~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~iwd~~~ 263 (299)
..-+.|..||..+.+ .....-...+.|.++|+ ++|.+++ ..+.|++|..+.
T Consensus 33 ~~~~~Vvyyd~~~~~---~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 33 LPWGNVVYYDGKEVK---VVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEEeCCEeE---EeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 344567777765322 22222345788999998 6655555 578899988653
No 491
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=53.58 E-value=7.5 Score=33.37 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=41.5
Q ss_pred CCCcchhccCcHHHHHHHhhccCccchhhHHHhhhhHHHHhhhhhHHHH
Q 022324 18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQL 66 (299)
Q Consensus 18 ~~~~~~~~~~~~~~~~~i~~~~~h~~~v~~~~~~~~~~~l~~~~~~w~~ 66 (299)
.-...+.+.+|+|...++|++++-....++...|..|+.+|.+.--|+.
T Consensus 66 ~~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~ 114 (483)
T KOG4341|consen 66 ADNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQH 114 (483)
T ss_pred hhcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccccee
Confidence 3445667789999999999999999999999999999999985555544
No 492
>PRK13684 Ycf48-like protein; Provisional
Probab=52.80 E-value=1.4e+02 Score=25.15 Aligned_cols=63 Identities=11% Similarity=-0.053 Sum_probs=37.6
Q ss_pred cCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCCceEEEeecc-C-CCCcEEEEEccCCCCeEEeee
Q 022324 232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRST-D-CTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~-~~~~i~~~~~s~~g~~l~s~s 295 (299)
....++++.+.++ +.+++ +..|.+.+=....|+.-.....+ . ....+.++.+.|++..+++|.
T Consensus 213 ~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 213 SSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred CcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 3467889999888 65555 45676653234445433322221 0 111588899999888777653
No 493
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=51.68 E-value=8.6 Score=36.34 Aligned_cols=22 Identities=14% Similarity=-0.071 Sum_probs=12.6
Q ss_pred eEEEEeC-CCcEEEEeCCCCceE
Q 022324 246 LIISGSS-LGSIAISGLSSDQRV 267 (299)
Q Consensus 246 ~l~~~~~-dg~i~iwd~~~~~~~ 267 (299)
++++++. +..+++|....-+|+
T Consensus 306 ~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 306 LRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred EEEecccCCcceeEeeccchhhh
Confidence 4445443 455777776655554
No 494
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=50.96 E-value=2.8e+02 Score=28.01 Aligned_cols=137 Identities=8% Similarity=0.018 Sum_probs=73.3
Q ss_pred EEEEEeC---------CCcEEEEecCC-----ceeEE-----Ee-c-CCCceeEEEEecCCCEEEEEcCCeEEEEecCCc
Q 022324 124 LILTGVG---------DKVMRLWSLEG-----YKCVE-----EY-S-LPNAASLVDFDFDESKIVGLIGTRICIWRRNGL 182 (299)
Q Consensus 124 ~l~s~~~---------dg~i~iwd~~~-----~~~~~-----~~-~-~~~~~~~~~~~~~~~~l~~~~d~~i~v~d~~~~ 182 (299)
||+.|.. -|.+.++|+-. +++.. .+ . ..++.++....-+| +++.+....|.+|+++..
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G-~l~~~~GqKI~v~~l~r~ 1126 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRG-HLLSSQGQKIIVRKLDRD 1126 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEecc-EEEEccCcEEEEEEeccC
Confidence 7777743 57899999642 32221 11 1 12233333333344 555677789999999543
Q ss_pred -eeeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcce-eeecc--ccCCceeEEEeCCC---CeEEEEeCCCc
Q 022324 183 -RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIR--MHCAPVTSLSLSED---QLIISGSSLGS 255 (299)
Q Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~--~~~~~i~~~~~~~~---~~l~~~~~dg~ 255 (299)
..+--........+..+....+.++.|.--..|.+.-...... +..+. ...-.+.++.|--+ -.++++..|+.
T Consensus 1127 ~~ligVaFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rN 1206 (1366)
T KOG1896|consen 1127 SELIGVAFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRN 1206 (1366)
T ss_pred CcceeeEEeccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCc
Confidence 2211111111122344445566677777767777665543222 22221 11223566666533 46888889999
Q ss_pred EEEEeC
Q 022324 256 IAISGL 261 (299)
Q Consensus 256 i~iwd~ 261 (299)
|++|-.
T Consensus 1207 i~vy~Y 1212 (1366)
T KOG1896|consen 1207 IHVYMY 1212 (1366)
T ss_pred EEEEEe
Confidence 988754
No 495
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=50.52 E-value=1e+02 Score=25.50 Aligned_cols=66 Identities=8% Similarity=0.070 Sum_probs=44.5
Q ss_pred eeEEEe-cCC-EEEEEeCCCcEEEEecCCceeEEEecCC-CceeE-----EEEecCCCEEE-EEcCCeEEEEecC
Q 022324 115 VDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASL-----VDFDFDESKIV-GLIGTRICIWRRN 180 (299)
Q Consensus 115 i~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~l~-~~~d~~i~v~d~~ 180 (299)
|+++.. .++ +|+|.-.-..|.+.|-.+|+.+..+.++ ..... .++-.+.+.+- ...++.|.++|-.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 455544 554 9999998899999999999999988766 22111 33333334443 4567788888863
No 496
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=50.16 E-value=25 Score=20.60 Aligned_cols=20 Identities=5% Similarity=-0.217 Sum_probs=16.7
Q ss_pred cEEEEEccCCCCeEEeeecc
Q 022324 278 HIICLMYPQFLHMLFFLCFL 297 (299)
Q Consensus 278 ~i~~~~~s~~g~~l~s~s~~ 297 (299)
.+.+++.-|||+.|++|...
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVD 21 (55)
T ss_pred ceEEEEECCCCcEEEEEEee
Confidence 46788999999999999753
No 497
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.14 E-value=1.9e+02 Score=25.63 Aligned_cols=130 Identities=12% Similarity=0.093 Sum_probs=74.5
Q ss_pred EEEecCCCEEEEEcCCeEEEEecCCce----eee-eccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCccee----e
Q 022324 157 VDFDFDESKIVGLIGTRICIWRRNGLR----SVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS----Q 227 (299)
Q Consensus 157 ~~~~~~~~~l~~~~d~~i~v~d~~~~~----~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~ 227 (299)
+-|+..++.+++...|.+.-|.+..+. ..+ ....|.+. .+.|+++++-++.--.++.|.+++....+.. .
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~-SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIK-SIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCcee-EEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 445555556667777777777665442 111 22233333 4588888888999999999999987422222 2
Q ss_pred eccccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCC-CceEEEeeccCCCCcEEEEEccCCCCe
Q 022324 228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGHIICLMYPQFLHM 290 (299)
Q Consensus 228 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~ 290 (299)
+.+.....|....|..+.-+|.-+..| +.+|-... .+.++..+.+.. .|.=..|.|+-+.
T Consensus 107 ~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~--nvnWy~yc~et~v 167 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL--NVNWYMYCPETAV 167 (657)
T ss_pred HhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhccc--CccEEEEccccce
Confidence 222334558888888774455555444 55554432 223444444444 4555566665544
No 498
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=49.03 E-value=1.5e+02 Score=24.36 Aligned_cols=108 Identities=10% Similarity=0.048 Sum_probs=66.7
Q ss_pred eeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeeccccCCceeEEEeCCC-CeEEEEeCCCcEEEEeCCCC
Q 022324 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD 264 (299)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 264 (299)
+....+.....++..+++.--+++...+.|--.|..+|+....--+.......|...|| ..-++-+.. -|.=.|.++.
T Consensus 56 fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ 134 (353)
T COG4257 56 FPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL 134 (353)
T ss_pred eccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCccc
Confidence 33444444444566667766777777788888899988876544455556677777887 444443333 4555666555
Q ss_pred ceEEEee--ccCCCCcEEEEEccCCCCeEEeee
Q 022324 265 QRVATLR--STDCTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 265 ~~~~~~~--~~~~~~~i~~~~~s~~g~~l~s~s 295 (299)
+. .++. ............|++.|.+-+++.
T Consensus 135 ev-t~f~lp~~~a~~nlet~vfD~~G~lWFt~q 166 (353)
T COG4257 135 EV-TRFPLPLEHADANLETAVFDPWGNLWFTGQ 166 (353)
T ss_pred ce-EEeecccccCCCcccceeeCCCccEEEeec
Confidence 42 2222 111112678889999999888775
No 499
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=48.00 E-value=1.7e+02 Score=24.60 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=38.3
Q ss_pred eEEEeCCC-CeEEEEeCC------CcEEEEeCCCCceEEEeeccC-------------CCCcEEEEEccCCCCeEEeeec
Q 022324 237 TSLSLSED-QLIISGSSL------GSIAISGLSSDQRVATLRSTD-------------CTGHIICLMYPQFLHMLFFLCF 296 (299)
Q Consensus 237 ~~~~~~~~-~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~g~~l~s~s~ 296 (299)
-+|++.++ .++++--.+ ..|.-++.. |+.+..+..+. .....-+|+++|+|+.|+++.-
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 36777556 666665556 678888876 76655542111 1126889999999997776643
No 500
>PRK13684 Ycf48-like protein; Provisional
Probab=47.15 E-value=1.7e+02 Score=24.60 Aligned_cols=140 Identities=6% Similarity=-0.069 Sum_probs=72.0
Q ss_pred eeEEEEecCCCEEEEEcCCeEEEE-ecCCce-eeeeccCCccceeeeeccCCCeEEEecCCCcEEEEEcCCcceeeecc-
Q 022324 154 ASLVDFDFDESKIVGLIGTRICIW-RRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR- 230 (299)
Q Consensus 154 ~~~~~~~~~~~~l~~~~d~~i~v~-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~- 230 (299)
...+.+.+++..++.+..|.+..- +-.... .............+.+.+.+..++. +..|.+.+=..+.+..-....
T Consensus 175 ~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~ 253 (334)
T PRK13684 175 VRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPII 253 (334)
T ss_pred EEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccccccC
Confidence 344788888877777777766543 222111 1122222222223455555554444 455665432233333211111
Q ss_pred ---ccCCceeEEEeCCCCeEEEEeCCCcEEEEeCCCCceEEEeeccC-CCCcEEEEEccCCCCeEEeee
Q 022324 231 ---MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD-CTGHIICLMYPQFLHMLFFLC 295 (299)
Q Consensus 231 ---~~~~~i~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~s~s 295 (299)
.....+..+.+.++..+..++.+|.+. .....++.-....... .....+.+.|..+++.+++|.
T Consensus 254 ~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 254 PEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 122357888888883345555677554 4455555444443211 111578888888888887765
Done!