Query 022328
Match_columns 299
No_of_seqs 28 out of 30
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 03:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 96.5 0.011 3.9E-07 46.7 8.1 109 135-245 141-249 (252)
2 4hxt_A De novo protein OR329; 96.1 0.026 8.9E-07 44.6 8.4 99 136-236 16-114 (252)
3 4db6_A Armadillo repeat protei 96.1 0.019 6.4E-07 45.1 7.4 99 137-237 69-167 (210)
4 4db6_A Armadillo repeat protei 96.1 0.023 7.9E-07 44.6 7.9 98 136-235 110-207 (210)
5 4db8_A Armadillo-repeat protei 95.8 0.22 7.4E-06 40.0 12.7 99 137-237 69-167 (252)
6 1xm9_A Plakophilin 1; armadill 95.6 0.066 2.3E-06 49.1 10.2 101 137-238 17-117 (457)
7 1xqr_A HSPBP1 protein; armadil 95.4 0.14 4.8E-06 45.7 11.3 97 139-237 99-196 (296)
8 1jdh_A Beta-catenin; beta-cate 95.0 0.51 1.7E-05 41.8 13.4 97 139-238 160-257 (529)
9 4db8_A Armadillo-repeat protei 95.0 0.089 3.1E-06 42.3 7.8 99 136-236 110-208 (252)
10 1wa5_B Importin alpha subunit; 94.5 0.22 7.4E-06 45.3 9.9 100 138-239 147-246 (530)
11 2jdq_A Importin alpha-1 subuni 94.3 0.96 3.3E-05 39.0 13.1 100 139-239 82-181 (450)
12 1xm9_A Plakophilin 1; armadill 93.8 0.14 4.7E-06 47.0 7.2 109 128-239 337-451 (457)
13 4b8j_A Importin subunit alpha- 93.7 1.5 5.3E-05 39.5 13.8 108 129-238 293-401 (528)
14 4b8j_A Importin subunit alpha- 93.5 0.31 1.1E-05 44.1 8.8 102 136-238 132-233 (528)
15 2z6h_A Catenin beta-1, beta-ca 93.4 0.23 8E-06 46.8 8.3 103 130-236 423-526 (644)
16 1xqr_A HSPBP1 protein; armadil 92.6 0.5 1.7E-05 42.1 8.8 102 135-238 138-239 (296)
17 1jdh_A Beta-catenin; beta-cate 92.0 0.5 1.7E-05 41.8 8.0 96 136-232 115-210 (529)
18 2z6g_A B-catenin; FULL-length, 91.8 0.46 1.6E-05 46.9 8.2 106 130-239 559-665 (780)
19 3tt9_A Plakophilin-2; cell adh 91.1 0.68 2.3E-05 40.5 7.7 103 130-233 17-120 (233)
20 2z6h_A Catenin beta-1, beta-ca 91.0 0.58 2E-05 44.2 7.7 98 136-234 112-209 (644)
21 2jdq_A Importin alpha-1 subuni 90.8 1.2 4E-05 38.4 8.8 102 135-238 289-391 (450)
22 1wa5_B Importin alpha subunit; 90.3 5.8 0.0002 36.0 13.4 102 135-238 312-413 (530)
23 2z6g_A B-catenin; FULL-length, 87.9 1.2 4.1E-05 44.0 7.6 91 128-218 240-330 (780)
24 3ul1_B Importin subunit alpha- 85.5 4.1 0.00014 37.6 9.4 107 128-236 322-429 (510)
25 3l6x_A Catenin delta-1; cateni 85.0 2.1 7E-05 42.4 7.6 117 106-225 20-151 (584)
26 3grl_A General vesicular trans 83.2 7.1 0.00024 39.9 10.7 257 23-290 18-339 (651)
27 3tpo_A Importin subunit alpha- 83.0 4.3 0.00015 37.5 8.4 106 129-236 342-448 (529)
28 3tpo_A Importin subunit alpha- 82.9 2.7 9.3E-05 38.8 7.0 81 140-220 138-218 (529)
29 3nmw_A APC variant protein; AR 82.8 2.8 9.5E-05 38.2 6.9 101 134-237 44-156 (354)
30 3ul1_B Importin subunit alpha- 80.8 4.6 0.00016 37.3 7.7 79 141-219 120-198 (510)
31 3nmw_A APC variant protein; AR 80.6 3.5 0.00012 37.5 6.8 199 38-238 98-335 (354)
32 3nmz_A APC variant protein; pr 75.3 9.8 0.00034 36.1 8.4 203 23-229 67-308 (458)
33 3nmz_A APC variant protein; pr 72.4 8.7 0.0003 36.5 7.3 212 25-238 188-451 (458)
34 3l6x_A Catenin delta-1; cateni 69.6 12 0.00041 37.0 7.7 106 128-235 361-474 (584)
35 1juq_A ADP-ribosylation factor 51.7 35 0.0012 28.6 6.5 77 135-221 63-149 (171)
36 3grl_A General vesicular trans 51.5 21 0.00073 36.4 6.0 97 142-238 142-242 (651)
37 3now_A UNC-45 protein, SD10334 45.9 66 0.0023 33.2 8.6 94 136-232 595-689 (810)
38 1elk_A Target of MYB1; superhe 45.6 53 0.0018 26.9 6.5 82 130-221 62-154 (157)
39 3ldz_A STAM-1, signal transduc 44.2 85 0.0029 25.2 7.4 80 135-221 55-138 (140)
40 3g2s_A C-terminal fragment of 44.2 49 0.0017 27.3 6.1 93 161-255 45-142 (149)
41 3now_A UNC-45 protein, SD10334 41.2 29 0.00099 35.8 5.2 82 155-236 699-781 (810)
42 1x5b_A Signal transducing adap 32.9 1.3E+02 0.0045 24.8 7.0 85 129-221 60-149 (163)
43 3rru_A TOM1L1 protein; structu 32.3 24 0.00081 29.3 2.4 44 212-255 104-149 (152)
44 1mhq_A ADP-ribosylation factor 26.5 1.1E+02 0.0039 24.9 5.5 94 160-255 34-132 (148)
45 1mhq_A ADP-ribosylation factor 24.7 1.5E+02 0.005 24.2 5.9 77 134-220 50-136 (148)
46 2vgl_B AP-2 complex subunit be 23.9 3.4E+02 0.012 25.4 8.9 77 176-276 383-459 (591)
47 3g2s_A C-terminal fragment of 23.8 1.6E+02 0.0054 24.2 5.9 78 134-221 60-147 (149)
48 3ldz_A STAM-1, signal transduc 22.1 2.4E+02 0.0083 22.5 6.6 94 161-256 39-134 (140)
49 3ltm_A Alpha-REP4; protein eng 21.3 2.9E+02 0.0098 21.3 7.9 56 164-232 19-74 (211)
50 3zyq_A Hepatocyte growth facto 20.8 1.3E+02 0.0045 25.8 5.0 95 161-256 42-138 (226)
51 3tt9_A Plakophilin-2; cell adh 20.2 76 0.0026 27.5 3.4 92 142-235 72-178 (233)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.47 E-value=0.011 Score=46.70 Aligned_cols=109 Identities=13% Similarity=0.100 Sum_probs=90.6
Q ss_pred ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 022328 135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL 214 (299)
Q Consensus 135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~l 214 (299)
++.-...|++.|--.|--.+..+....+..+++.++++|....+..+..++-+|-.+...++.+...+.+.+++..+.++
T Consensus 141 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l 220 (252)
T 4hxt_A 141 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKL 220 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 34556678888888777777777777788999999999998888899999999999998899999999999999999999
Q ss_pred HhhcccccchhhhHhHHHHHHhhcccCCCCC
Q 022328 215 IRDKQVDENLRLRCGEFLLLLIGHVNGRQLS 245 (299)
Q Consensus 215 lK~~q~d~~vRlKC~EFLl~yl~~~~~~~~~ 245 (299)
+++. +.++|..+...|.-+..+..+...+
T Consensus 221 l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~ 249 (252)
T 4hxt_A 221 LTST--DSEVQKEAQRALENIKSGGWLEHHH 249 (252)
T ss_dssp GGCS--CHHHHHHHHHHHHHHHHTCBCCC--
T ss_pred HCCC--cHHHHHHHHHHHHHHHcCCCccccc
Confidence 9864 6789999999888877766655433
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.12 E-value=0.026 Score=44.61 Aligned_cols=99 Identities=13% Similarity=0.140 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328 136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI 215 (299)
Q Consensus 136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll 215 (299)
......|++.|.-.+--++..+....+..+++.++++|....+-.+..++.+|-.+-.+++.+...+-+.+|+..+.+++
T Consensus 16 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 95 (252)
T 4hxt_A 16 SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL 95 (252)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 45566788888888888887888888889999999999998888899999999999999999999999999999999999
Q ss_pred hhcccccchhhhHhHHHHHHh
Q 022328 216 RDKQVDENLRLRCGEFLLLLI 236 (299)
Q Consensus 216 K~~q~d~~vRlKC~EFLl~yl 236 (299)
++ -++++|..|+.-|.-+.
T Consensus 96 ~~--~~~~v~~~a~~~L~~l~ 114 (252)
T 4hxt_A 96 TS--TDSEVQKEAARALANIA 114 (252)
T ss_dssp TC--SSHHHHHHHHHHHHHHT
T ss_pred cC--CCHHHHHHHHHHHHHHH
Confidence 96 46889988888777766
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.09 E-value=0.019 Score=45.14 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 022328 137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR 216 (299)
Q Consensus 137 sEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK 216 (299)
.-...|++.|--.|--.+..+....+..++..++++|....+-.+..+.-+|-.+..+++.+...+-+.+++..+.++++
T Consensus 69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 148 (210)
T 4db6_A 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148 (210)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc
Confidence 34556888888888778888888888899999999999888888999999999888888888888999999999999999
Q ss_pred hcccccchhhhHhHHHHHHhh
Q 022328 217 DKQVDENLRLRCGEFLLLLIG 237 (299)
Q Consensus 217 ~~q~d~~vRlKC~EFLl~yl~ 237 (299)
+. +.++|..++..|.-+..
T Consensus 149 ~~--~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 149 SP--NEQILQEALWALSNIAS 167 (210)
T ss_dssp CS--CHHHHHHHHHHHHHHHT
T ss_pred CC--CHHHHHHHHHHHHHHHc
Confidence 75 78899999988877754
No 4
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.08 E-value=0.023 Score=44.62 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328 136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI 215 (299)
Q Consensus 136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll 215 (299)
..-...|+.+|.-.|--.+..+.......+++.++++|....+-.|..++-+|-.+.-+++.+...+.+..+++.+.+++
T Consensus 110 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH
Confidence 34455677788777777777776777888999999999988888899999999999999999999999999999999999
Q ss_pred hhcccccchhhhHhHHHHHH
Q 022328 216 RDKQVDENLRLRCGEFLLLL 235 (299)
Q Consensus 216 K~~q~d~~vRlKC~EFLl~y 235 (299)
++ -++++|-++.+.|--+
T Consensus 190 ~~--~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 190 SH--ENEKIQKEAQEALEKL 207 (210)
T ss_dssp GC--SCHHHHHHHHHHHHHH
T ss_pred hC--CCHHHHHHHHHHHHHH
Confidence 85 4778999999887654
No 5
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.83 E-value=0.22 Score=40.01 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 022328 137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR 216 (299)
Q Consensus 137 sEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK 216 (299)
.-...|++.|.-++--++..+....+..+++.++++|....+..+..++.+|-.+-.+++.....+-+.+|+..+.++++
T Consensus 69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 148 (252)
T 4db8_A 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 148 (252)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh
Confidence 44567888888888778888888888899999999999987888899998887776665555488889999999999998
Q ss_pred hcccccchhhhHhHHHHHHhh
Q 022328 217 DKQVDENLRLRCGEFLLLLIG 237 (299)
Q Consensus 217 ~~q~d~~vRlKC~EFLl~yl~ 237 (299)
+. +.++|..++.-|.-+..
T Consensus 149 ~~--~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 149 SP--NEQILQEALWALSNIAS 167 (252)
T ss_dssp CS--CHHHHHHHHHHHHHHTT
T ss_pred CC--CHHHHHHHHHHHHHHHc
Confidence 75 77899888877766654
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=95.65 E-value=0.066 Score=49.11 Aligned_cols=101 Identities=21% Similarity=0.274 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 022328 137 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR 216 (299)
Q Consensus 137 sEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK 216 (299)
..-..|...|.-.|.-.++.+....+..++..|+++|....+-.|....-+|--+-.++++|...+-+..|+...+++|+
T Consensus 17 ~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~ 96 (457)
T 1xm9_A 17 KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLR 96 (457)
T ss_dssp HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHh
Confidence 44567788888878777788878889999999999999877788999999999999999999999999999999999998
Q ss_pred hcccccchhhhHhHHHHHHhhc
Q 022328 217 DKQVDENLRLRCGEFLLLLIGH 238 (299)
Q Consensus 217 ~~q~d~~vRlKC~EFLl~yl~~ 238 (299)
+.+ +.+++-.++.-|.-+..+
T Consensus 97 ~~~-~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 97 RTG-NAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp TCC-CHHHHHHHHHHHHHHHTS
T ss_pred hCC-CHHHHHHHHHHHHHHhcC
Confidence 544 668888888877777766
No 7
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.44 E-value=0.14 Score=45.67 Aligned_cols=97 Identities=15% Similarity=0.175 Sum_probs=80.7
Q ss_pred HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhc-CcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhh
Q 022328 139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-GALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRD 217 (299)
Q Consensus 139 I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~r-g~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~ 217 (299)
-..|.++|--++=..+.++..+-+..|+..|+++|... .+-.+..++-||-++.-+.++++..|.+.+|+..++++|++
T Consensus 99 r~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 34678888777777899999999999999999999864 45678899999999888899999999999999999999987
Q ss_pred cccccchhhhHhHHHHHHhh
Q 022328 218 KQVDENLRLRCGEFLLLLIG 237 (299)
Q Consensus 218 ~q~d~~vRlKC~EFLl~yl~ 237 (299)
. |..+|.+.+--|..+..
T Consensus 179 ~--d~~v~~~A~~aLs~L~~ 196 (296)
T 1xqr_A 179 Q--VQKLKVKSAFLLQNLLV 196 (296)
T ss_dssp S--CHHHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHh
Confidence 4 78888887755554433
No 8
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.02 E-value=0.51 Score=41.75 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=72.9
Q ss_pred HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcch-hhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhh
Q 022328 139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALE-QGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRD 217 (299)
Q Consensus 139 I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~le-q~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~ 217 (299)
...+.+.|.-.+.-+++++....+..+++.++++|....... +.++..+ +.-|-.++.|...+-+.+++..+.+++++
T Consensus 160 ~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~g~~~~L~~ll~~ 238 (529)
T 1jdh_A 160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV-LKVLSVCSSNKPAIVEAGGMQALGLHLTD 238 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHH-HHHHTTSTTHHHHHHHTTHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHH-HHHHhcCcccHHHHHHCCCHHHHHHHHhC
Confidence 344555666556667888888888899999999998754332 2334433 44556789999999999999999999987
Q ss_pred cccccchhhhHhHHHHHHhhc
Q 022328 218 KQVDENLRLRCGEFLLLLIGH 238 (299)
Q Consensus 218 ~q~d~~vRlKC~EFLl~yl~~ 238 (299)
. +.+++..|+..|.-+..+
T Consensus 239 ~--~~~~~~~a~~~L~~l~~~ 257 (529)
T 1jdh_A 239 P--SQRLVQNCLWTLRNLSDA 257 (529)
T ss_dssp S--CHHHHHHHHHHHHHHHTT
T ss_pred C--ChHHHHHHHHHHHHHhcC
Confidence 6 788999998888776654
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.98 E-value=0.089 Score=42.28 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328 136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI 215 (299)
Q Consensus 136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll 215 (299)
+.-...|+..|--.|--.........+..+++.++++|....+-.+..++.+|-.+.-+++.+...+-+.+++..+.+++
T Consensus 110 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll 189 (252)
T 4db8_A 110 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 34455667777666665555546677788999999999888788899999999888888889988999999999999999
Q ss_pred hhcccccchhhhHhHHHHHHh
Q 022328 216 RDKQVDENLRLRCGEFLLLLI 236 (299)
Q Consensus 216 K~~q~d~~vRlKC~EFLl~yl 236 (299)
++. ++++|..++..|.-+.
T Consensus 190 ~~~--~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 190 SSP--NEQILQEALWALSNIA 208 (252)
T ss_dssp GCS--SHHHHHHHHHHHHHHT
T ss_pred CCC--CHHHHHHHHHHHHHHh
Confidence 976 8899999998887665
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=94.46 E-value=0.22 Score=45.35 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhh
Q 022328 138 EVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRD 217 (299)
Q Consensus 138 EI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~ 217 (299)
-...|++.|.-.+--.+.++.......++..|+++|....+-.+..++.+|-.+--|++.+...+-+.+++..+.+++++
T Consensus 147 v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 226 (530)
T 1wa5_B 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS 226 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc
Confidence 34457777776666667777777788899999999998888889999999999999999998888889999999999998
Q ss_pred cccccchhhhHhHHHHHHhhcc
Q 022328 218 KQVDENLRLRCGEFLLLLIGHV 239 (299)
Q Consensus 218 ~q~d~~vRlKC~EFLl~yl~~~ 239 (299)
.+.++|..++..|.-+..+.
T Consensus 227 --~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 227 --NKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHCCS
T ss_pred --CCHHHHHHHHHHHHHHhCCC
Confidence 67889988888887776554
No 11
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.31 E-value=0.96 Score=38.97 Aligned_cols=100 Identities=17% Similarity=0.038 Sum_probs=79.7
Q ss_pred HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhc
Q 022328 139 VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK 218 (299)
Q Consensus 139 I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~ 218 (299)
-..|+++|...+--.++.+....+..++..++.+|....+-.+..++.+|-.+.-|++.+...+-+.+++..+.+++++
T Consensus 82 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~- 160 (450)
T 2jdq_A 82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK- 160 (450)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-
Confidence 3456677766665555555555567899999999998777888999999999999998888888888999999999984
Q ss_pred ccccchhhhHhHHHHHHhhcc
Q 022328 219 QVDENLRLRCGEFLLLLIGHV 239 (299)
Q Consensus 219 q~d~~vRlKC~EFLl~yl~~~ 239 (299)
..+.++|..++..|.-+..+.
T Consensus 161 ~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 161 QNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHHHHhCCC
Confidence 356789999998888776544
No 12
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=93.81 E-value=0.14 Score=47.03 Aligned_cols=109 Identities=9% Similarity=0.064 Sum_probs=82.9
Q ss_pred ccccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcc------hhhhHHHHHHHHHhCCChhhhh
Q 022328 128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGAL------EQGACLDALTSLMLDSSANQLD 201 (299)
Q Consensus 128 ~kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~l------eq~AcLDtLl~lmvDSs~N~~d 201 (299)
+++-...++.-..-|...|.-++- +++.+....+ .++.-|+++|....+. .+.+++++|-.++-.++.+.+.
T Consensus 337 v~LL~~~~~~v~~~A~~aL~nls~-~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~ 414 (457)
T 1xm9_A 337 ARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQ 414 (457)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHH
T ss_pred HHHHhCCCHhHHHHHHHHHHHHhc-CHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 555555555444445555555554 6777777766 5999999999875442 5579999999999999999999
Q ss_pred hhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhhcc
Q 022328 202 FEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHV 239 (299)
Q Consensus 202 FE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~~~ 239 (299)
++++.|++++.++++.. .+++++-|....|.-|..|.
T Consensus 415 i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 415 YFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSST
T ss_pred HHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcch
Confidence 99999999999999965 46788888888887766553
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.72 E-value=1.5 Score=39.52 Aligned_cols=108 Identities=8% Similarity=0.059 Sum_probs=86.7
Q ss_pred cccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhc-CcchhhhHHHHHHHHHhCCChhhhhhhhhcc
Q 022328 129 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-GALEQGACLDALTSLMLDSSANQLDFEACNG 207 (299)
Q Consensus 129 kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~r-g~leq~AcLDtLl~lmvDSs~N~~dFE~~~G 207 (299)
++-..+++.-..-|+++|--+|--.+..+...-...++..++++|... .+..+..+.-+|-.+.-.++.+...+-+.++
T Consensus 293 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~ 372 (528)
T 4b8j_A 293 ELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI 372 (528)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC
T ss_pred HHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
Confidence 333444566677889999888877777777777889999999999987 7778888888877777777777777778899
Q ss_pred HHHHHHHHhhcccccchhhhHhHHHHHHhhc
Q 022328 208 IEEVAELIRDKQVDENLRLRCGEFLLLLIGH 238 (299)
Q Consensus 208 l~~Va~llK~~q~d~~vRlKC~EFLl~yl~~ 238 (299)
+..+.+++++. +.++|..++..|.-+..+
T Consensus 373 i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 373 IGPLVNLLQTA--EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CHHHHHHHHHHHHHHHcC
Confidence 99999999876 789999998888777655
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=93.48 E-value=0.31 Score=44.07 Aligned_cols=102 Identities=13% Similarity=0.005 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328 136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI 215 (299)
Q Consensus 136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll 215 (299)
+.--..|+..|.-.+--++..+....+..++..|+++|....+-.+..++-+|-.+--|++.+...+-+.+++..+..++
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL 211 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQL 211 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHH
Confidence 44455678888877777788888888899999999999988788899999999999999999999999999999999999
Q ss_pred hhcccccchhhhHhHHHHHHhhc
Q 022328 216 RDKQVDENLRLRCGEFLLLLIGH 238 (299)
Q Consensus 216 K~~q~d~~vRlKC~EFLl~yl~~ 238 (299)
++. .+.+++-.++..|.-+..+
T Consensus 212 ~~~-~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 212 NEH-TKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHCS
T ss_pred hcC-CCHHHHHHHHHHHHHHHcC
Confidence 643 4778888888877766554
No 15
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.43 E-value=0.23 Score=46.82 Aligned_cols=103 Identities=14% Similarity=0.124 Sum_probs=80.0
Q ss_pred ccCCCChHHHH-HHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 022328 130 VTSPSTDAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI 208 (299)
Q Consensus 130 it~psTdsEI~-LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl 208 (299)
+++..++.+|. .+++.|--++ .++..+....+..+++.|+++|....+-.|.+++-+|--+. ..+++...|+++.|+
T Consensus 423 ~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g~l 500 (644)
T 2z6h_A 423 FVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGAT 500 (644)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCH
T ss_pred hcccccHHHHHHHHHHHHHHHh-cCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCh
Confidence 44555677775 5666666555 46677888888899999999998877778888887766654 558899999999999
Q ss_pred HHHHHHHhhcccccchhhhHhHHHHHHh
Q 022328 209 EEVAELIRDKQVDENLRLRCGEFLLLLI 236 (299)
Q Consensus 209 ~~Va~llK~~q~d~~vRlKC~EFLl~yl 236 (299)
+.+.+++++. ++++|..|+.-|.-+.
T Consensus 501 ~~L~~ll~~~--~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 501 APLTELLHSR--NEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHcCC--CHHHHHHHHHHHHHHh
Confidence 9999999865 7789988888776553
No 16
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.59 E-value=0.5 Score=42.12 Aligned_cols=102 Identities=11% Similarity=0.082 Sum_probs=83.2
Q ss_pred ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 022328 135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL 214 (299)
Q Consensus 135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~l 214 (299)
.+.-..-|+..|--.|--+++.....-...++..|+++|....+-.|....=+|-.+.-.++++...|-+.+++..++++
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L 217 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH
Confidence 34555677888877777778877666677899999999998877788777777777777788889999999999999999
Q ss_pred HhhcccccchhhhHhHHHHHHhhc
Q 022328 215 IRDKQVDENLRLRCGEFLLLLIGH 238 (299)
Q Consensus 215 lK~~q~d~~vRlKC~EFLl~yl~~ 238 (299)
|+.. +.++|.+++.-|.-++..
T Consensus 218 L~~~--d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 218 VRTE--HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HTSC--CSTHHHHHHHHHHHHHTT
T ss_pred HcCC--ChhHHHHHHHHHHHHHhC
Confidence 9876 788999999998766654
No 17
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.03 E-value=0.5 Score=41.81 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328 136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI 215 (299)
Q Consensus 136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll 215 (299)
+.-...|++.|.-+|.-++..+....+..++..++++|....+-.+..+.++|-.+-.+++++...+-+.+|++.+.+++
T Consensus 115 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll 194 (529)
T 1jdh_A 115 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194 (529)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 34456788888888888788888888899999999999886666778888888888888999999999999999999999
Q ss_pred hhcccccchhhhHhHHH
Q 022328 216 RDKQVDENLRLRCGEFL 232 (299)
Q Consensus 216 K~~q~d~~vRlKC~EFL 232 (299)
++. .++.++..|+..|
T Consensus 195 ~~~-~~~~~~~~a~~~L 210 (529)
T 1jdh_A 195 RTY-TYEKLLWTTSRVL 210 (529)
T ss_dssp HHC-CCHHHHHHHHHHH
T ss_pred HhC-ChHHHHHHHHHHH
Confidence 975 3444554444443
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=91.77 E-value=0.46 Score=46.88 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=83.1
Q ss_pred ccCCCChHHHH-HHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 022328 130 VTSPSTDAEVA-LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI 208 (299)
Q Consensus 130 it~psTdsEI~-LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl 208 (299)
+++..++.+|. .+++.|.-+| .++.++....+..+++.|+++|....+-.|.++.-+|-.+.- .+++...|++..|+
T Consensus 559 ~~~~~~~~~v~~~a~~aL~~La-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~i 636 (780)
T 2z6g_A 559 FVEGVRMEEIVEACTGALHILA-RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGAT 636 (780)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHT-TSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCH
T ss_pred hhcccChHHHHHHHHHHHHHHh-cChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCH
Confidence 44555666663 5667776666 467888888888999999999998888889998888776654 47889999999999
Q ss_pred HHHHHHHhhcccccchhhhHhHHHHHHhhcc
Q 022328 209 EEVAELIRDKQVDENLRLRCGEFLLLLIGHV 239 (299)
Q Consensus 209 ~~Va~llK~~q~d~~vRlKC~EFLl~yl~~~ 239 (299)
+.+.+++++. +++||-.|+.-|.-+..+.
T Consensus 637 ~~L~~Ll~~~--~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 637 APLTELLHSR--NEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp HHHHHGGGCS--CHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHcCC
Confidence 9999999864 6889998888776655433
No 19
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=91.05 E-value=0.68 Score=40.50 Aligned_cols=103 Identities=17% Similarity=0.298 Sum_probs=81.7
Q ss_pred ccCCCChHH-HHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 022328 130 VTSPSTDAE-VALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI 208 (299)
Q Consensus 130 it~psTdsE-I~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl 208 (299)
+.++..+.+ ...|...|+-.|.-+++.+....+..+|..|+++|....+-.|..-.-+|.-+=.+++.|....-+..||
T Consensus 17 L~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI 96 (233)
T 3tt9_A 17 LEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGV 96 (233)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred hCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCH
Confidence 445544223 3567778888888889999999999999999999998878889888999999989999999999999999
Q ss_pred HHHHHHHhhcccccchhhhHhHHHH
Q 022328 209 EEVAELIRDKQVDENLRLRCGEFLL 233 (299)
Q Consensus 209 ~~Va~llK~~q~d~~vRlKC~EFLl 233 (299)
..++++|+..+ +.+++-.++--|+
T Consensus 97 ~~Lv~lL~~~~-~~~~~e~a~~aL~ 120 (233)
T 3tt9_A 97 PRLLQVLKQTR-DLETKKQITGLLW 120 (233)
T ss_dssp HHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHccCC-CHHHHHHHHHHHH
Confidence 99999999743 4455544443333
No 20
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=91.00 E-value=0.58 Score=44.15 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHH
Q 022328 136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELI 215 (299)
Q Consensus 136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~ll 215 (299)
+.-...|+..|.-+|-.....+....+..+++.++++|....+-.+.+++++|-.+-..+++|...+-+..|+..+.+++
T Consensus 112 ~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL 191 (644)
T 2z6h_A 112 DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 191 (644)
T ss_dssp HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHH
Confidence 44567788888888887788888888889999999999987777788888888888888999999999999999999999
Q ss_pred hhcccccchhhhHhHHHHH
Q 022328 216 RDKQVDENLRLRCGEFLLL 234 (299)
Q Consensus 216 K~~q~d~~vRlKC~EFLl~ 234 (299)
++.. ++.++..|+.-|.-
T Consensus 192 ~~~~-~~~~~~~a~~~L~n 209 (644)
T 2z6h_A 192 RTYT-YEKLLWTTSRVLKV 209 (644)
T ss_dssp TTCC-CHHHHHHHHHHHHH
T ss_pred HcCC-hHHHHHHHHHHHHH
Confidence 8763 45565555555433
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=90.78 E-value=1.2 Score=38.44 Aligned_cols=102 Identities=13% Similarity=0.017 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhC-CChhhhhhhhhccHHHHHH
Q 022328 135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLD-SSANQLDFEACNGIEEVAE 213 (299)
Q Consensus 135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvD-Ss~N~~dFE~~~Gl~~Va~ 213 (299)
...-..-|++.|...+--++..........++..++++|....+-.|.++.-+|-.+..+ ++++...+-+.+++..+.+
T Consensus 289 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ 368 (450)
T 2jdq_A 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD 368 (450)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHH
Confidence 344445677777666654555555555567899999999987777888888888888777 5566666767889999999
Q ss_pred HHhhcccccchhhhHhHHHHHHhhc
Q 022328 214 LIRDKQVDENLRLRCGEFLLLLIGH 238 (299)
Q Consensus 214 llK~~q~d~~vRlKC~EFLl~yl~~ 238 (299)
++++. +.++|..|.+.|.-++..
T Consensus 369 ll~~~--~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 369 LLTVM--DSKIVQVALNGLENILRL 391 (450)
T ss_dssp GGGSS--CHHHHHHHHHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHHHHHHHHh
Confidence 99975 788999999998776653
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=90.32 E-value=5.8 Score=35.99 Aligned_cols=102 Identities=9% Similarity=-0.018 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH
Q 022328 135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL 214 (299)
Q Consensus 135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~l 214 (299)
.+.-..-|+++|--+|--++..+...-...++..++++|....+..+.+++-+|-.+.-.++.+...+-+.+++..+.++
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l 391 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 391 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 34445667888877776666666666667899999999988777788888888877766677776777778999999999
Q ss_pred HhhcccccchhhhHhHHHHHHhhc
Q 022328 215 IRDKQVDENLRLRCGEFLLLLIGH 238 (299)
Q Consensus 215 lK~~q~d~~vRlKC~EFLl~yl~~ 238 (299)
+++. +.++|..++.-|--+..+
T Consensus 392 L~~~--~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 392 LEVA--EYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHS--CHHHHHHHHHHHHHHHHH
T ss_pred HhcC--CHHHHHHHHHHHHHHHhc
Confidence 9864 678998888887766654
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=87.91 E-value=1.2 Score=43.98 Aligned_cols=91 Identities=13% Similarity=0.187 Sum_probs=76.4
Q ss_pred ccccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhcc
Q 022328 128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNG 207 (299)
Q Consensus 128 ~kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~G 207 (299)
+++-....+.-...|+..|--+|..+...+....+..++..++++|.....-.+..++++|-.+-.+++++...|-+..|
T Consensus 240 v~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~ 319 (780)
T 2z6g_A 240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 319 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC
Confidence 34444445666778999999999988899999988999999999998866666788888888777788999999999999
Q ss_pred HHHHHHHHhhc
Q 022328 208 IEEVAELIRDK 218 (299)
Q Consensus 208 l~~Va~llK~~ 218 (299)
++.+++++|+.
T Consensus 320 i~~Lv~lL~~~ 330 (780)
T 2z6g_A 320 PQALVNIMRTY 330 (780)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcC
Confidence 99999999975
No 24
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=85.48 E-value=4.1 Score=37.61 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=83.6
Q ss_pred ccccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhc
Q 022328 128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACN 206 (299)
Q Consensus 128 ~kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~-N~~dFE~~~ 206 (299)
+++-+-+.+.-...|...|-.++--.+..+.....+.++..++++|.....-.|..+.=+|--+...++. +...+-+..
T Consensus 322 ~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g 401 (510)
T 3ul1_B 322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401 (510)
T ss_dssp C-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCC
Confidence 3444444455556677778777777888888888899999999999998888888888888888776554 446678899
Q ss_pred cHHHHHHHHhhcccccchhhhHhHHHHHHh
Q 022328 207 GIEEVAELIRDKQVDENLRLRCGEFLLLLI 236 (299)
Q Consensus 207 Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl 236 (299)
++....++|+.. |.+++..+.+.|.-++
T Consensus 402 ~i~~L~~LL~~~--d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 402 IIEPLMNLLSAK--DTKIIQVILDAISNIF 429 (510)
T ss_dssp CHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 999999999864 7889999999886554
No 25
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=85.02 E-value=2.1 Score=42.44 Aligned_cols=117 Identities=20% Similarity=0.296 Sum_probs=77.9
Q ss_pred cccccccCCccccccccccCCC--c------------cccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHH
Q 022328 106 SFKEDSVDERVTSLDHIFTVDP--M------------RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMN 171 (299)
Q Consensus 106 sl~~~~~~~~V~~l~~i~g~ep--~------------kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~Avevlln 171 (299)
-|.+++ -+.+.+++.+.-..| . .+.++ .+.....|...|.-.|.-+.+.|....+..+|..|++
T Consensus 20 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~-~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~ 97 (584)
T 3l6x_A 20 PLAQHE-RGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR-LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVG 97 (584)
T ss_dssp ---------------------CCCCCCCCCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred cccccc-cchHHHHHHHHhcCCCCCCcccccHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHH
Confidence 344555 556777777744211 1 12333 3334456778888889889999999999999999999
Q ss_pred HHhhcCcchhhhHHHHHHHHHh-CCChhhhhhhhhccHHHHHHHHhhcccccchh
Q 022328 172 ILSTRGALEQGACLDALTSLML-DSSANQLDFEACNGIEEVAELIRDKQVDENLR 225 (299)
Q Consensus 172 iL~~rg~leq~AcLDtLl~lmv-DSs~N~~dFE~~~Gl~~Va~llK~~q~d~~vR 225 (299)
+|....+-.|....-+|--|-. |+++|....-++.||..++++|+..+ +.+++
T Consensus 98 LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~-~~~~~ 151 (584)
T 3l6x_A 98 LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR-DMDLT 151 (584)
T ss_dssp GGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC-SHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC-CHHHH
Confidence 9998888889999999999988 58999999999999999999999743 33444
No 26
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=83.20 E-value=7.1 Score=39.86 Aligned_cols=257 Identities=14% Similarity=0.200 Sum_probs=148.5
Q ss_pred hhhhhHHHHHHHHHHHHH---HHHHHHHHHhhhhhhhcchhhHHHhchHHHHHHHhhhhcc--------ccchhhhhccC
Q 022328 23 AAATAVGELANSLKQQRV---QREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAES--------DSTIHFFCQSQ 91 (299)
Q Consensus 23 ~~~~~v~elv~sl~~qR~---yRevtlaLR~gLRDa~AeFSFlR~rglr~ll~fl~s~a~s--------d~~i~LF~~sQ 91 (299)
.++..+..|++-++---+ .|+--++||.=-|+.++++. .+||+.|+..|+.-.+- |.-..+|+...
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg---~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG---IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH---HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh---hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 334445555544443322 46777888888888888775 78899998888764321 22236777543
Q ss_pred Cc----------------------CCccchhhhhcccccccccCC---cccccccc------------c----cCCC-cc
Q 022328 92 SV----------------------PELQVVPVLFQHSFKEDSVDE---RVTSLDHI------------F----TVDP-MR 129 (299)
Q Consensus 92 s~----------------------~~lQvvPvLF~hsl~~~~~~~---~V~~l~~i------------~----g~ep-~k 129 (299)
.= .+-.-||.|++. |+.....- .|-.|..+ + |+.. |.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 21 112236666653 21111000 11111111 1 1111 22
Q ss_pred ccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCc----chhhhHHHHHHHHHhCCChhhhhhhhh
Q 022328 130 VTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGA----LEQGACLDALTSLMLDSSANQLDFEAC 205 (299)
Q Consensus 130 it~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~----leq~AcLDtLl~lmvDSs~N~~dFE~~ 205 (299)
+-+-+.+-=-..|+-+|.-.+=-++....+..--.|.+.+++|+...|. ..+.-||-.+-.++=..++||.-|-|.
T Consensus 174 lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt 253 (651)
T 3grl_A 174 LLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG 253 (651)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence 2222222222347777777777888888888888999999999999776 678899999999999999999999999
Q ss_pred ccHHHHHHHHhhcccccch------hhhHhHHHHHHhhcccCCCCCCccc--HHHHHHHHhchhhHHHHHHhhhccCCCC
Q 022328 206 NGIEEVAELIRDKQVDENL------RLRCGEFLLLLIGHVNGRQLSPMAT--IHEDIRRLLGEKSASLIWAASQFGSTLN 277 (299)
Q Consensus 206 ~Gl~~Va~llK~~q~d~~v------RlKC~EFLl~yl~~~~~~~~~~~a~--~~ed~~~llGe~~asliwaa~~fgstlD 277 (299)
+++.+++.+++. +++. |+++.-..+..+.-.-..++++-.+ -|..+.+ ......+... -|++...
T Consensus 254 ~~i~~L~~LL~~---~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~---~g~l~~Ll~l-l~~~~~p 326 (651)
T 3grl_A 254 SYIQRMKPWFEV---GDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQ---CGLLQQLCTI-LMATGVP 326 (651)
T ss_dssp TCGGGGGGGGCC---CSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH---TTHHHHHHHH-HTCSSCC
T ss_pred CCHHHHHHHhCC---CccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH---CCCHHHHHHH-HccCCCC
Confidence 999999999974 3344 6777544444443333333321111 2222222 1111122221 3446666
Q ss_pred hHHhHHHHHHHHH
Q 022328 278 PEERLMALHIQAR 290 (299)
Q Consensus 278 ~e~r~~aL~~qA~ 290 (299)
..-|..|+.--|.
T Consensus 327 ~~i~~~Al~tla~ 339 (651)
T 3grl_A 327 ADILTETINTVSE 339 (651)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6677777765554
No 27
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=82.99 E-value=4.3 Score=37.45 Aligned_cols=106 Identities=14% Similarity=0.110 Sum_probs=81.9
Q ss_pred cccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhcc
Q 022328 129 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACNG 207 (299)
Q Consensus 129 kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~-N~~dFE~~~G 207 (299)
++-+.+.+.-...|...|--+|--.+......-.+.++..++++|.....-.|..+.=+|-.+...++. +...+-+..+
T Consensus 342 ~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~ 421 (529)
T 3tpo_A 342 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGI 421 (529)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence 333333444445677777777777888888888889999999999998888888888888887776544 4566788999
Q ss_pred HHHHHHHHhhcccccchhhhHhHHHHHHh
Q 022328 208 IEEVAELIRDKQVDENLRLRCGEFLLLLI 236 (299)
Q Consensus 208 l~~Va~llK~~q~d~~vRlKC~EFLl~yl 236 (299)
|....++|+.. |.+++..|.+.|.-++
T Consensus 422 i~~L~~LL~~~--d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 422 IEPLMNLLSAK--DTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence 99999999754 7889988888876554
No 28
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=82.93 E-value=2.7 Score=38.80 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=70.4
Q ss_pred HHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcc
Q 022328 140 ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ 219 (299)
Q Consensus 140 ~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q 219 (299)
..|.++|--++--.+..+...-...|+..|+.+|....+-.|..|+-+|-.|-.|++.+...+-++.|+..+..+++...
T Consensus 138 ~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~ 217 (529)
T 3tpo_A 138 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPD 217 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccc
Confidence 34777777777777777778888899999999998888889999999999999999999999999999999999998654
Q ss_pred c
Q 022328 220 V 220 (299)
Q Consensus 220 ~ 220 (299)
.
T Consensus 218 ~ 218 (529)
T 3tpo_A 218 L 218 (529)
T ss_dssp G
T ss_pred h
Confidence 3
No 29
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=82.81 E-value=2.8 Score=38.18 Aligned_cols=101 Identities=16% Similarity=0.173 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhc-----------CcchhhhHHHHHHHHHhCCChhhhhh
Q 022328 134 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTR-----------GALEQGACLDALTSLMLDSSANQLDF 202 (299)
Q Consensus 134 sTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~r-----------g~leq~AcLDtLl~lmvDSs~N~~dF 202 (299)
+++-++..|++.|.-.+- +++++.+..+..+++.|+++|... .+-.|....-+|--+-.+++.|...+
T Consensus 44 ~~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 457888899999998886 489999999999999999999631 13457778888888888888888888
Q ss_pred hhhcc-HHHHHHHHhhcccccchhhhHhHHHHHHhh
Q 022328 203 EACNG-IEEVAELIRDKQVDENLRLRCGEFLLLLIG 237 (299)
Q Consensus 203 E~~~G-l~~Va~llK~~q~d~~vRlKC~EFLl~yl~ 237 (299)
....| |...+++|+. -+++++-..+-.|.-+..
T Consensus 123 ~~~~GaIp~LV~LL~s--~~~~v~~~A~~aL~nLs~ 156 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKS--ESEDLQQVIASVLRNLSW 156 (354)
T ss_dssp HHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHCC--CCHHHHHHHHHHHHHHhc
Confidence 88889 9999999984 456777776666655544
No 30
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=80.82 E-value=4.6 Score=37.30 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=67.0
Q ss_pred HHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcc
Q 022328 141 LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ 219 (299)
Q Consensus 141 LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q 219 (299)
.|.++|--.+--.++.+...-+..||..|+.+|....+-.|..|+-+|--+-.|++.+...+-+..|+..+..+++...
T Consensus 120 ~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~ 198 (510)
T 3ul1_B 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD 198 (510)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhcc
Confidence 3556665555556667777778899999999999888889999999999999999999999999999999999998654
No 31
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=80.61 E-value=3.5 Score=37.49 Aligned_cols=199 Identities=13% Similarity=0.148 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHhhhhhhhcchhhH-HHhc-hHHHHHHHhhhhc---cccchhhhh--------ccCCcCCccchhhhhc
Q 022328 38 QRVQREITLALRTGLRDARAEFSFL-RVRG-LRSLLKILRSVAE---SDSTIHFFC--------QSQSVPELQVVPVLFQ 104 (299)
Q Consensus 38 qR~yRevtlaLR~gLRDa~AeFSFl-R~rg-lr~ll~fl~s~a~---sd~~i~LF~--------~sQs~~~lQvvPvLF~ 104 (299)
..+.++.+++|+.=-+.-...-..+ ...| +..|++.|+|--. .++.-.|.. ..+.+.+...||.|.+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence 4577888888876443322122223 4678 8888888875211 011111111 1133455567888876
Q ss_pred ccccccc--c-CCcccccccc--------------ccCCC--ccccCCCChH---H-HHHHHHHHhhccc---cCcchHH
Q 022328 105 HSFKEDS--V-DERVTSLDHI--------------FTVDP--MRVTSPSTDA---E-VALALRVLEGCCL---LHRESAI 158 (299)
Q Consensus 105 hsl~~~~--~-~~~V~~l~~i--------------~g~ep--~kit~psTds---E-I~LALrVLeGccL---Lh~~s~~ 158 (299)
--++... + ...+..|-.+ -|.=| +++-...++. + +..|..+|.-++- -++..+.
T Consensus 178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~ 257 (354)
T 3nmw_A 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 257 (354)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 5332211 0 0001111111 11112 2222222221 2 3445555555554 4778888
Q ss_pred HhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhhc
Q 022328 159 LAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGH 238 (299)
Q Consensus 159 ~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~~ 238 (299)
...++.++..|+++|.....-.|..+.-+|--+-..++.|...+-+..|+....++++.. ++++|..++.=|.-+..+
T Consensus 258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~--~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS--SHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC
Confidence 888999999999999987777888888888777668899999999999999999999864 667887777666655543
No 32
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=75.35 E-value=9.8 Score=36.14 Aligned_cols=203 Identities=13% Similarity=0.088 Sum_probs=122.6
Q ss_pred hhhhhHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhhhcchhhHHHhchHHHHHHHhhhhccccchhhhh
Q 022328 23 AAATAVGELANSLKQ--------------QRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFC 88 (299)
Q Consensus 23 ~~~~~v~elv~sl~~--------------qR~yRevtlaLR~gLRDa~AeFSFlR~rglr~ll~fl~s~a~sd~~i~LF~ 88 (299)
..++++--||+-|.. ..+..|-+|+|..=...---++...|..|+=.+|+-++.. .+-.+++.+
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 144 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAY--CETCWEWQE 144 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh--hHHHHHHHH
Confidence 336788888888885 5788889999988776666678888888887777766553 222444444
Q ss_pred ccCCcCCc--------------cchhhhhcccccccccCCcccccc------ccccCCC--ccccCCCChH-HHHHHHHH
Q 022328 89 QSQSVPEL--------------QVVPVLFQHSFKEDSVDERVTSLD------HIFTVDP--MRVTSPSTDA-EVALALRV 145 (299)
Q Consensus 89 ~sQs~~~l--------------QvvPvLF~hsl~~~~~~~~V~~l~------~i~g~ep--~kit~psTds-EI~LALrV 145 (299)
+.=+..|- |-|=.|..-|.. ++..+.|...+ .++..+- -+.+++..+. -..-|..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~a 223 (458)
T 3nmz_A 145 AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA 223 (458)
T ss_dssp TTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred hhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHH
Confidence 32111221 222235443332 21122222211 1111100 0011122222 24567788
Q ss_pred HhhccccCcchHHHhh-hhHHHHHHHHHHhhcCcchhhhHHHHHHHHHh-CCChhhhhhhhhccHHHHHHHHhhcccccc
Q 022328 146 LEGCCLLHRESAILAH-KHKAIKILMNILSTRGALEQGACLDALTSLML-DSSANQLDFEACNGIEEVAELIRDKQVDEN 223 (299)
Q Consensus 146 LeGccLLh~~s~~~a~-r~~AvevllniL~~rg~leq~AcLDtLl~lmv-DSs~N~~dFE~~~Gl~~Va~llK~~q~d~~ 223 (299)
|.-.|.-..+.|.... ...+|..|+.+|....+-.|....-+|--+=. +++.|...+-+..||...+++|.+.+ +.+
T Consensus 224 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~-~~~ 302 (458)
T 3nmz_A 224 LTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KES 302 (458)
T ss_dssp HHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC-SHH
T ss_pred HHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC-CHH
Confidence 8888887777787765 45569999999987666677777777766544 35678888889999999999876544 444
Q ss_pred hhhhHh
Q 022328 224 LRLRCG 229 (299)
Q Consensus 224 vRlKC~ 229 (299)
++-..+
T Consensus 303 v~~~A~ 308 (458)
T 3nmz_A 303 TLKSVL 308 (458)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544333
No 33
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=72.42 E-value=8.7 Score=36.49 Aligned_cols=212 Identities=14% Similarity=0.155 Sum_probs=129.6
Q ss_pred hhhHHHHHHHHH-------------HHHHHHHHHHHHHhhhhhhh-cchhhHHHhc-hHHHHHHHhhhhc---cccchhh
Q 022328 25 ATAVGELANSLK-------------QQRVQREITLALRTGLRDAR-AEFSFLRVRG-LRSLLKILRSVAE---SDSTIHF 86 (299)
Q Consensus 25 ~~~v~elv~sl~-------------~qR~yRevtlaLR~gLRDa~-AeFSFlR~rg-lr~ll~fl~s~a~---sd~~i~L 86 (299)
.+++.-|+.-|. ...+.++.+++|+.=-++-. .-..+....| +..|.+.|+|--. .+..-.|
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 455666666663 35678899999987443322 2222334678 8888888875210 0111111
Q ss_pred hh--------ccCCcCCccchhhhhcccccccc--c-CCcccccccc--------------ccCCC--cc-ccCCCCh--
Q 022328 87 FC--------QSQSVPELQVVPVLFQHSFKEDS--V-DERVTSLDHI--------------FTVDP--MR-VTSPSTD-- 136 (299)
Q Consensus 87 F~--------~sQs~~~lQvvPvLF~hsl~~~~--~-~~~V~~l~~i--------------~g~ep--~k-it~psTd-- 136 (299)
.. .-+.|.+.-.||.|.+--++... + ...+..|..+ .|.=| ++ +.++...
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~ 347 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 347 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSST
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcch
Confidence 11 11445556678888775443221 0 0001111111 11111 22 2333221
Q ss_pred -HHHHHHHHHHhhccc---cCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHH
Q 022328 137 -AEVALALRVLEGCCL---LHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVA 212 (299)
Q Consensus 137 -sEI~LALrVLeGccL---Lh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va 212 (299)
.-+.-|..+|.-++- -++..+....++.++..++++|.....-.|..+.-+|--+-..++.|...+-+..|+....
T Consensus 348 ~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv 427 (458)
T 3nmz_A 348 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLK 427 (458)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 123445566665554 5778888888899999999999887777888888888877778899999999999999999
Q ss_pred HHHhhcccccchhhhHhHHHHHHhhc
Q 022328 213 ELIRDKQVDENLRLRCGEFLLLLIGH 238 (299)
Q Consensus 213 ~llK~~q~d~~vRlKC~EFLl~yl~~ 238 (299)
++++.. ++++|..++.=|.-+..+
T Consensus 428 ~LL~s~--~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 428 NLIHSK--HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp TTTTCS--SHHHHHHHHHHHHHHHTC
T ss_pred HHHhCC--CHHHHHHHHHHHHHHHcC
Confidence 999764 677887777777666544
No 34
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=69.56 E-value=12 Score=37.04 Aligned_cols=106 Identities=13% Similarity=0.115 Sum_probs=74.6
Q ss_pred ccccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcC-c-------chhhhHHHHHHHHHhCCChhh
Q 022328 128 MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRG-A-------LEQGACLDALTSLMLDSSANQ 199 (299)
Q Consensus 128 ~kit~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg-~-------leq~AcLDtLl~lmvDSs~N~ 199 (299)
+++-...++.-+.-|.+.|--++. ++..+... ...++.-|+.+|.... . -.+.+++=||-.|+-.++.|.
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~ 438 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHH
Confidence 555555666666667777777775 55566666 4579999999997642 1 234566777777788999999
Q ss_pred hhhhhhccHHHHHHHHhhcccccchhhhHhHHHHHH
Q 022328 200 LDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLL 235 (299)
Q Consensus 200 ~dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~y 235 (299)
+..-+++||..++.++++....++++--++-.|+-+
T Consensus 439 ~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 999999999999999998754555544444444433
No 35
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=51.73 E-value=35 Score=28.58 Aligned_cols=77 Identities=17% Similarity=0.216 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHhhccccCcchHHHhhhhHHHH----HHHHHHhhc------CcchhhhHHHHHHHHHhCCChhhhhhhh
Q 022328 135 TDAEVALALRVLEGCCLLHRESAILAHKHKAIK----ILMNILSTR------GALEQGACLDALTSLMLDSSANQLDFEA 204 (299)
Q Consensus 135 TdsEI~LALrVLeGccLLh~~s~~~a~r~~Ave----vllniL~~r------g~leq~AcLDtLl~lmvDSs~N~~dFE~ 204 (299)
+..+..+||.+|+-|.-+| -.-.|+..|-+ .|..++..+ .+-.+.-+|..+-.. ...|..
T Consensus 63 n~~vql~AL~LLd~~vkNC---G~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W-------~~~f~~ 132 (171)
T 1juq_A 63 QEWEALQALTVLEACMKNC---GRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW-------TMALPE 132 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHS---HHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH-------HHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHc---CHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH-------HHHcCC
Confidence 5678899999999998765 34455544434 445555422 234556777766654 445888
Q ss_pred hccHHHHHHHHhhcccc
Q 022328 205 CNGIEEVAELIRDKQVD 221 (299)
Q Consensus 205 ~~Gl~~Va~llK~~q~d 221 (299)
.+++..+-+.||..|+.
T Consensus 133 ~~~i~~~y~~Lk~~G~~ 149 (171)
T 1juq_A 133 EAKIKDAYHMLKRQGIV 149 (171)
T ss_dssp CHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHHHHCCCC
Confidence 88899999999999974
No 36
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=51.51 E-value=21 Score=36.39 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=65.3
Q ss_pred HHHHHhhccccCcc--hHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcc
Q 022328 142 ALRVLEGCCLLHRE--SAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQ 219 (299)
Q Consensus 142 ALrVLeGccLLh~~--s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q 219 (299)
+++.|+-.|...+. -+.......++.-|+++|.......+-..+..|..+-=+++..|+-+.--+|.+.+-++++..|
T Consensus 142 alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg 221 (651)
T 3grl_A 142 GVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEG 221 (651)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcC
Confidence 34555555554444 2233334456666666666666666666777777777778888888888899999999999988
Q ss_pred ccc--chhhhHhHHHHHHhhc
Q 022328 220 VDE--NLRLRCGEFLLLLIGH 238 (299)
Q Consensus 220 ~d~--~vRlKC~EFLl~yl~~ 238 (299)
--+ .|=-.|...|.-++-+
T Consensus 222 ~~~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 222 NSDGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp GGGSHHHHHHHHHHHHHHHTT
T ss_pred CCccchhHHHHHHHHHHHHhc
Confidence 622 3445788877766655
No 37
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=45.94 E-value=66 Score=33.20 Aligned_cols=94 Identities=19% Similarity=0.131 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhh-hccHHHHHHH
Q 022328 136 DAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEA-CNGIEEVAEL 214 (299)
Q Consensus 136 dsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~-~~Gl~~Va~l 214 (299)
.....-|+..|-.++-.....+...-+-.++..++++|....+..|.+.+.++--++ =++.++..|.+ .+++.-...+
T Consensus 595 ~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa-~~~~~~~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV-MSEDVIKMFEGNNDRVKFLALL 673 (810)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT-TSHHHHHHHHSSSSHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh-CChHHHHHHHhccCcHHHHHHH
Confidence 333445788888777776677777777789999999999999999999998876554 47788888885 5667777777
Q ss_pred HhhcccccchhhhHhHHH
Q 022328 215 IRDKQVDENLRLRCGEFL 232 (299)
Q Consensus 215 lK~~q~d~~vRlKC~EFL 232 (299)
+.. -+.++|-..+=.|
T Consensus 674 L~s--~d~~vq~~Aa~AL 689 (810)
T 3now_A 674 CED--EDEETATACAGAL 689 (810)
T ss_dssp GGC--SSHHHHHHHHHHH
T ss_pred hcC--CCHHHHHHHHHHH
Confidence 765 3566776555333
No 38
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=45.62 E-value=53 Score=26.89 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=49.7
Q ss_pred ccCCCChHHHHHHHHHHhhccccCcchHHHhhhhHHHHH-----HHHHHhhcCc---chhhhHHHHHHHHHhCCChhhhh
Q 022328 130 VTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKI-----LMNILSTRGA---LEQGACLDALTSLMLDSSANQLD 201 (299)
Q Consensus 130 it~psTdsEI~LALrVLeGccLLh~~s~~~a~r~~Avev-----llniL~~rg~---leq~AcLDtLl~lmvDSs~N~~d 201 (299)
|.+..+..++.+||.+|+-|.-+|- .-.|+..|-+- +..++..++. ..+.-+|..+-.- ...
T Consensus 62 l~~~~n~~v~l~AL~LLd~~vkNcG---~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W-------~~~ 131 (157)
T 1elk_A 62 IVGNKNFHEVMLALTVLETCVKNCG---HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW-------ADA 131 (157)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHSC---HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH-------HHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHhC---HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH-------HHH
Confidence 4444556788999999999987763 23344333333 4455544332 3456677666554 335
Q ss_pred hhh---hccHHHHHHHHhhcccc
Q 022328 202 FEA---CNGIEEVAELIRDKQVD 221 (299)
Q Consensus 202 FE~---~~Gl~~Va~llK~~q~d 221 (299)
|+. +.++..+-+.||..|+.
T Consensus 132 f~~~p~l~~i~~~Y~~Lk~~G~~ 154 (157)
T 1elk_A 132 FRSSPDLTGVVTIYEDLRRKGLE 154 (157)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCCcchHHHHHHHHHHHHcCCC
Confidence 654 45567777788888763
No 39
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=44.22 E-value=85 Score=25.19 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHhhccccCcch-HHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhcc---HHH
Q 022328 135 TDAEVALALRVLEGCCLLHRES-AILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNG---IEE 210 (299)
Q Consensus 135 TdsEI~LALrVLeGccLLh~~s-~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~G---l~~ 210 (299)
+..+..+||.+|+-|.-+|-.- ..-.+.+.=++.+..++....+-.+.-||..+-+. ...|+..++ +..
T Consensus 55 n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W-------~~~f~~~~~l~~i~~ 127 (140)
T 3ldz_A 55 DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW-------TDEFKNDPQLSLISA 127 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-------HHHHTTCGGGTHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH-------HHHhCCCCCchHHHH
Confidence 4568889999999998765331 11111222234455555444444556666655543 447776655 566
Q ss_pred HHHHHhhcccc
Q 022328 211 VAELIRDKQVD 221 (299)
Q Consensus 211 Va~llK~~q~d 221 (299)
+-+.||..|+.
T Consensus 128 ~Y~~Lk~~G~~ 138 (140)
T 3ldz_A 128 MIKNLKEQGVT 138 (140)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHccCc
Confidence 66788888763
No 40
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=44.20 E-value=49 Score=27.28 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChh-hhhhhhhccHHHHHHHHhhc----ccccchhhhHhHHHHHH
Q 022328 161 HKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSAN-QLDFEACNGIEEVAELIRDK----QVDENLRLRCGEFLLLL 235 (299)
Q Consensus 161 ~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N-~~dFE~~~Gl~~Va~llK~~----q~d~~vRlKC~EFLl~y 235 (299)
+-..|++.+..-|..+.+-+|--.|-.|=+++=-+... +..+-.-.-++++.++++++ .++.+||-||.|.+.-+
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 45567777777777777778877666555555545443 24444445567788888864 68999999999988876
Q ss_pred hhcccCCCCCCcccHHHHHH
Q 022328 236 IGHVNGRQLSPMATIHEDIR 255 (299)
Q Consensus 236 l~~~~~~~~~~~a~~~ed~~ 255 (299)
-... +. .|.+..+.+.|+
T Consensus 125 ~~~f-~~-~p~i~~~Y~~Lk 142 (149)
T 3g2s_A 125 TVGL-PE-EVKIAEAYQMLK 142 (149)
T ss_dssp HHHC-TT-CHHHHHHHHHHH
T ss_pred HHHh-CC-CchHHHHHHHHH
Confidence 5543 22 344444555554
No 41
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=41.23 E-value=29 Score=35.80 Aligned_cols=82 Identities=9% Similarity=-0.009 Sum_probs=66.7
Q ss_pred chHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhc-ccccchhhhHhHHHH
Q 022328 155 ESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK-QVDENLRLRCGEFLL 233 (299)
Q Consensus 155 ~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~-q~d~~vRlKC~EFLl 233 (299)
.+++...+..+++.|+++|.....-.|...+-++..+.-.++.+.....+.+|++.+.++++.. ..+.+++-++.|-|-
T Consensus 699 ~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~ 778 (810)
T 3now_A 699 CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLA 778 (810)
T ss_dssp HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHH
Confidence 4566665578999999999988888899999999888887788899999999999999999875 246677766666665
Q ss_pred HHh
Q 022328 234 LLI 236 (299)
Q Consensus 234 ~yl 236 (299)
-.+
T Consensus 779 ~ll 781 (810)
T 3now_A 779 AAE 781 (810)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 42
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=32.90 E-value=1.3e+02 Score=24.78 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred cccCCCChHHHHHHHHHHhhccccC-cchHHHhhhhHHHHHHHHHHhh-cCcchhhhHHHHHHHHHhCCChhhhhhhh--
Q 022328 129 RVTSPSTDAEVALALRVLEGCCLLH-RESAILAHKHKAIKILMNILST-RGALEQGACLDALTSLMLDSSANQLDFEA-- 204 (299)
Q Consensus 129 kit~psTdsEI~LALrVLeGccLLh-~~s~~~a~r~~AvevllniL~~-rg~leq~AcLDtLl~lmvDSs~N~~dFE~-- 204 (299)
||.++ +..+..+||.+|+-|.-+| +.-......+.=++.+..++.. ..+..+.-+|..+-.. ...|+.
T Consensus 60 rl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W-------~~~f~~~~ 131 (163)
T 1x5b_A 60 RVNHK-VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEW-------SEEFQKDP 131 (163)
T ss_dssp HHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------HHHTTTCS
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH-------HHHhcCCc
Q ss_pred -hccHHHHHHHHhhcccc
Q 022328 205 -CNGIEEVAELIRDKQVD 221 (299)
Q Consensus 205 -~~Gl~~Va~llK~~q~d 221 (299)
+.++..+-+.||..|+.
T Consensus 132 ~l~~i~~~Y~~Lk~~G~~ 149 (163)
T 1x5b_A 132 QFSLISATIKSMKEEGIT 149 (163)
T ss_dssp TTHHHHHHHHHHHTTTCC
T ss_pred ccHHHHHHHHHHHHcCCC
No 43
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=32.28 E-value=24 Score=29.31 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=25.2
Q ss_pred HHHHhhc-ccccchhhhHhHHHHHHhhcccCC-CCCCcccHHHHHH
Q 022328 212 AELIRDK-QVDENLRLRCGEFLLLLIGHVNGR-QLSPMATIHEDIR 255 (299)
Q Consensus 212 a~llK~~-q~d~~vRlKC~EFLl~yl~~~~~~-~~~~~a~~~ed~~ 255 (299)
.++++++ .++.+||-||.|.+.-+-....+. +.+.+..+.++|+
T Consensus 104 ~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p~l~~i~~~Y~~Lk 149 (152)
T 3rru_A 104 VKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVYLDLV 149 (152)
T ss_dssp GGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSCCCHHHHHHHHHHH
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 4455554 467789999998887766544322 1333344444444
No 44
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=26.52 E-value=1.1e+02 Score=24.86 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=58.6
Q ss_pred hhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhh-hhhhhhccHHHHHHHHhhc----ccccchhhhHhHHHHH
Q 022328 160 AHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQ-LDFEACNGIEEVAELIRDK----QVDENLRLRCGEFLLL 234 (299)
Q Consensus 160 a~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~-~dFE~~~Gl~~Va~llK~~----q~d~~vRlKC~EFLl~ 234 (299)
.+-+.|++.+..-|..+.+-+|.-.|..|=+++--+...- ..+-.-.=++++.++++++ +++.+||-||.|.+.-
T Consensus 34 ~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (148)
T 1mhq_A 34 NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFS 113 (148)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHH
Confidence 3567778888888877778888777776666665544322 2332223355677777753 5789999999998876
Q ss_pred HhhcccCCCCCCcccHHHHHH
Q 022328 235 LIGHVNGRQLSPMATIHEDIR 255 (299)
Q Consensus 235 yl~~~~~~~~~~~a~~~ed~~ 255 (299)
+-... +. .|.+..+++.++
T Consensus 114 W~~~f-~~-~p~i~~~y~~Lk 132 (148)
T 1mhq_A 114 WTVWF-PE-DIKIRDAYQMLK 132 (148)
T ss_dssp HHHHC-TT-CHHHHHHHHHHH
T ss_pred HHHHc-CC-CchHHHHHHHHH
Confidence 65443 22 233444444443
No 45
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=24.69 E-value=1.5e+02 Score=24.18 Aligned_cols=77 Identities=21% Similarity=0.225 Sum_probs=53.8
Q ss_pred CChHHHHHHHHHHhhccccCcchHHHhhhhHHHHHHHHHHhh----c------CcchhhhHHHHHHHHHhCCChhhhhhh
Q 022328 134 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILST----R------GALEQGACLDALTSLMLDSSANQLDFE 203 (299)
Q Consensus 134 sTdsEI~LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~----r------g~leq~AcLDtLl~lmvDSs~N~~dFE 203 (299)
.+..+..+||.+|+-|.-+|- .-.|+..|-+-+||-|-. . .+..+.-+|..+-+- ...|.
T Consensus 50 ~n~~vql~AL~LLe~~vkNCG---~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W-------~~~f~ 119 (148)
T 1mhq_A 50 PQEKEALYALTVLEMCMNHCG---EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW-------TVWFP 119 (148)
T ss_dssp SSHHHHHHHHHHHHHHHHHSC---HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH-------HHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHcC---HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH-------HHHcC
Confidence 356788999999999987654 445665555566665442 1 223556677666554 44688
Q ss_pred hhccHHHHHHHHhhccc
Q 022328 204 ACNGIEEVAELIRDKQV 220 (299)
Q Consensus 204 ~~~Gl~~Va~llK~~q~ 220 (299)
..+++..+-+.||..|+
T Consensus 120 ~~p~i~~~y~~Lk~~G~ 136 (148)
T 1mhq_A 120 EDIKIRDAYQMLKKQGI 136 (148)
T ss_dssp TCHHHHHHHHHHHHTTS
T ss_pred CCchHHHHHHHHHHcCC
Confidence 88889999999999987
No 46
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=23.87 E-value=3.4e+02 Score=25.45 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=42.4
Q ss_pred cCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhhcccCCCCCCcccHHHHHH
Q 022328 176 RGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIR 255 (299)
Q Consensus 176 rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~~~~~~~~~~~a~~~ed~~ 255 (299)
+.+.....|+|+|+.++-|..++.+. .-+..+.++++. .++.|-++.+.|.-.+.+... .+.
T Consensus 383 ~~~~~~~~~v~~Ll~ll~~~~~~v~~----e~i~~l~~ii~~---~p~~~~~~v~~L~~~l~~~~~----------~~~- 444 (591)
T 2vgl_B 383 KVEQSAERCVSTLLDLIQTKVNYVVQ----EAIVVIRDIFRK---YPNKYESIIATLCENLDSLDE----------PDA- 444 (591)
T ss_dssp TCHHHHHHHHHHHHHHHHTCCHHHHH----HHHHHHHHHHHH---SCSSCCTTHHHHHHTTTTCCS----------HHH-
T ss_pred hChhHHHHHHHHHHHHHcccchHHHH----HHHHHHHHHHHH---CcchHHHHHHHHHHHHHhccC----------HHH-
Confidence 33444578999999988777554322 224555566654 344555555555443322110 111
Q ss_pred HHhchhhHHHHHHhhhccCCC
Q 022328 256 RLLGEKSASLIWAASQFGSTL 276 (299)
Q Consensus 256 ~llGe~~asliwaa~~fgstl 276 (299)
.++.+|..++||..+
T Consensus 445 ------~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 445 ------RAAMIWIVGEYAERI 459 (591)
T ss_dssp ------HHHHHHHHHTTCTTC
T ss_pred ------HHHHHHHHHcccccc
Confidence 246678888877544
No 47
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=23.81 E-value=1.6e+02 Score=24.19 Aligned_cols=78 Identities=19% Similarity=0.220 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHhhccccCcchHHHhhhhHHHHH----HHHHHhhc-----C-cchhhhHHHHHHHHHhCCChhhhhhh
Q 022328 134 STDAEVALALRVLEGCCLLHRESAILAHKHKAIKI----LMNILSTR-----G-ALEQGACLDALTSLMLDSSANQLDFE 203 (299)
Q Consensus 134 sTdsEI~LALrVLeGccLLh~~s~~~a~r~~Avev----llniL~~r-----g-~leq~AcLDtLl~lmvDSs~N~~dFE 203 (299)
.+..+..+||.+|+-|.-+|-. -+|.-.|-+- |..++..+ . +..+.-+|..+-+. ...|.
T Consensus 60 ~n~~v~l~AL~LLe~cvkNCG~---~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W-------~~~f~ 129 (149)
T 3g2s_A 60 PQEWEAIQALTVLETCMKSCGK---RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW-------TVGLP 129 (149)
T ss_dssp SSHHHHHHHHHHHHHHHHHCCH---HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH-------HHHCT
T ss_pred CCHHHHHHHHHHHHHHHHhcCH---HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH-------HHHhC
Confidence 3567889999999999876543 3444344333 44555432 2 23456666655554 44688
Q ss_pred hhccHHHHHHHHhhcccc
Q 022328 204 ACNGIEEVAELIRDKQVD 221 (299)
Q Consensus 204 ~~~Gl~~Va~llK~~q~d 221 (299)
..+++..+-+.||+.|+-
T Consensus 130 ~~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 130 EEVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp TCHHHHHHHHHHHHTTCC
T ss_pred CCchHHHHHHHHHHCcCc
Confidence 889999999999999874
No 48
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=22.08 E-value=2.4e+02 Score=22.49 Aligned_cols=94 Identities=10% Similarity=0.159 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChh-hhhhhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhhcc
Q 022328 161 HKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSAN-QLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHV 239 (299)
Q Consensus 161 ~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N-~~dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~~~ 239 (299)
+-..|++.+..-|..+.+-+|.-.|..|=+++=-+... ...+-.-.=++++.+++++ ++.+||-||.|.+.-+-...
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~--~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNK--GHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHh
Confidence 44567777777676666667766555444444333221 1111112223445566654 67899999999887554333
Q ss_pred cCC-CCCCcccHHHHHHH
Q 022328 240 NGR-QLSPMATIHEDIRR 256 (299)
Q Consensus 240 ~~~-~~~~~a~~~ed~~~ 256 (299)
... +.+.+..+++.+++
T Consensus 117 ~~~~~l~~i~~~Y~~Lk~ 134 (140)
T 3ldz_A 117 KNDPQLSLISAMIKNLKE 134 (140)
T ss_dssp TTCGGGTHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHH
Confidence 221 12234445556554
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.34 E-value=2.9e+02 Score=21.33 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHhHHH
Q 022328 164 KAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFL 232 (299)
Q Consensus 164 ~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFL 232 (299)
.+++.+++.|....+..+..++.+|-.+ ..-+++..+.+.+++. +..+|..+.+-|
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~-----------~~~~~~~~L~~~l~~~--~~~vr~~a~~aL 74 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKI-----------GDERAVEPLIKALKDE--DAWVRRAAADAL 74 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH-----------CCGGGHHHHHHHTTCS--CHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------CCccHHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 3445555555444444444444444321 1123445555555543 455555555544
No 50
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.81 E-value=1.3e+02 Score=25.85 Aligned_cols=95 Identities=11% Similarity=0.164 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChh-hhhhhhhccHHHHHHHHhhcccccchhhhHhHHHHHHhhcc
Q 022328 161 HKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSAN-QLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHV 239 (299)
Q Consensus 161 ~r~~AvevllniL~~rg~leq~AcLDtLl~lmvDSs~N-~~dFE~~~Gl~~Va~llK~~q~d~~vRlKC~EFLl~yl~~~ 239 (299)
+-..|++.+..=|..+.+-+|.-.|..|=+++--+... ...+-.-.-++++.++++ ..++.+||-|+.|.+.-+--..
T Consensus 42 ~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~-~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 42 QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK-RQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHh
Confidence 34667777777777666777766555444444333331 222222233445666665 5789999999999887665433
Q ss_pred cCC-CCCCcccHHHHHHH
Q 022328 240 NGR-QLSPMATIHEDIRR 256 (299)
Q Consensus 240 ~~~-~~~~~a~~~ed~~~ 256 (299)
... +.+.+..+++.|++
T Consensus 121 ~~~~~l~~i~~~Y~~Lk~ 138 (226)
T 3zyq_A 121 RNEPKYKVVQDTYQIMKV 138 (226)
T ss_dssp TTCGGGHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHh
Confidence 221 12224445555554
No 51
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=20.21 E-value=76 Score=27.53 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=59.9
Q ss_pred HHHHHhhccccCcchHHHhhhhHHHHHHHHHHhh-cCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh--hc
Q 022328 142 ALRVLEGCCLLHRESAILAHKHKAIKILMNILST-RGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR--DK 218 (299)
Q Consensus 142 ALrVLeGccLLh~~s~~~a~r~~AvevllniL~~-rg~leq~AcLDtLl~lmvDSs~N~~dFE~~~Gl~~Va~llK--~~ 218 (299)
|...|.-.+--+++.|....+..||..|+++|.. ...-.|..+.-+|..+-. +++|.+..-+ +|+...++++- ..
T Consensus 72 Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~s 149 (233)
T 3tt9_A 72 VCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFS 149 (233)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhcccc
Confidence 4444444455578999999999999999999985 445566666666666644 4566666655 47777776552 22
Q ss_pred cc------------ccchhhhHhHHHHHH
Q 022328 219 QV------------DENLRLRCGEFLLLL 235 (299)
Q Consensus 219 q~------------d~~vRlKC~EFLl~y 235 (299)
|. +.+++-+.+..|--+
T Consensus 150 G~~~~~~~~~~~~~~~~v~~na~~~L~nL 178 (233)
T 3tt9_A 150 GWPEGDYPKANGLLDFDIFYNVTGCLRNM 178 (233)
T ss_dssp CCCGGGCCCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHHHH
Confidence 22 446666666666433
Done!