BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022329
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 332 bits (850), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 150/292 (51%), Positives = 204/292 (69%), Gaps = 1/292 (0%)
Query: 1 MSNIRLRDLPSFIRTTDPNEIMFDFLGSEAQNCFKSSAIIFNTFDEFEHEALEVIASKFP 60
+ N RL+D+ FIRTT+PN+IM +F A K + I+ NTF+E E + + ++S P
Sbjct: 191 LKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIP 250
Query: 61 NIYTVGPLPLLCKQVVEA-KFRSFGSSLWKEDTDCLKWLDKRDANSVVYVNYGSITVMTE 119
+IY +GPLP L KQ + + S S+LWKEDT+CL WL+ ++ SVVYVN+GS TVMT
Sbjct: 251 SIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTP 310
Query: 120 QHLTEFAWGLANSKRPFLWILRPDVVMGDSVVLPDEYFEEIKDRGFIVSWCNQEQVLSHP 179
+ L EFAWGLAN K+ FLWI+RPD+V+G SV+ E+ EI DRG I SWC Q++VL+HP
Sbjct: 311 EQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIASWCPQDKVLNHP 370
Query: 180 SVGAFLTHCGWNSTMESICGGVPVICWPFFAEQQTNCRYACTTWGIGMEVNHDVKRGDIE 239
S+G FLTHCGWNST ESIC GVP++CWPFFA+Q T+CR+ C W IGME++ +VKR ++
Sbjct: 371 SIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELA 430
Query: 240 ALVKEMMDGDEGKKMRQXXXXXXXXXXXXTAVGGQSYNNFDRLVKMVLQQGN 291
L+ E++ GD+GKKM+Q T GG SY N ++++K VL + N
Sbjct: 431 KLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVLLKQN 482
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 134/241 (55%), Gaps = 30/241 (12%)
Query: 35 KSSAIIFNTFDEFEHEALEVIASK---FPNIYTVGPLPLLCKQVVEAKFRSFGSSLWKED 91
++ I+ NTF E E A++ + P +Y VGPL + KQ EAK E+
Sbjct: 206 EAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQ--EAK--------QTEE 255
Query: 92 TDCLKWLDKRDANSVVYVNYGSITVMTEQHLTEFAWGLANSKRPFLWILRPDVVMGDS-- 149
++CLKWLD + SV+YV++GS +T + L E A GLA+S++ FLW++R + +S
Sbjct: 256 SECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSY 315
Query: 150 ----------VVLPDEYFEEIKDRGFIVS-WCNQEQVLSHPSVGAFLTHCGWNSTMESIC 198
LP + E K RGF++ W Q QVL+HPS G FLTHCGWNST+ES+
Sbjct: 316 FDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVV 375
Query: 199 GGVPVICWPFFAEQQTNCRYACTTWGIGMEVNHD----VKRGDIEALVKEMMDGDEGKKM 254
G+P+I WP +AEQ+ N + V+R ++ +VK +M+G+EGK +
Sbjct: 376 SGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGV 435
Query: 255 R 255
R
Sbjct: 436 R 436
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 139/287 (48%), Gaps = 16/287 (5%)
Query: 1 MSNIRLRDLPSFIRTTDPNEIMFDFLGSEAQNCFKSSAIIFNTFDEFEHEALEVIASKFP 60
MS +R RDL I + N + L Q K++A+ N+F+E + + SK
Sbjct: 179 MSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLK 238
Query: 61 NIYTVGPLPLLCKQVVEAKFRSFGSSLWKEDTDCLKWLDKRDANSVVYVNYGSITVMTEQ 120
+GP L+ V T CL+WL +R SVVY+++G++T
Sbjct: 239 TYLNIGPFNLITPPPVVPN-----------TTGCLQWLKERKPTSVVYISFGTVTTPPPA 287
Query: 121 HLTEFAWGLANSKRPFLWILRPDVVMGDSVVLPDEYFEEIKDRGFIVSWCNQEQVLSHPS 180
+ + L S+ PF+W LR V LP+ + E+ + G +V W Q +VL+H +
Sbjct: 288 EVVALSEALEASRVPFIWSLRDKA----RVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEA 343
Query: 181 VGAFLTHCGWNSTMESICGGVPVICWPFFAEQQTNCRYACTTWGIGMEVNHDV-KRGDIE 239
VGAF+THCGWNS ES+ GGVP+IC PFF +Q+ N R IG+ + V + +
Sbjct: 344 VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFTKSGLM 403
Query: 240 ALVKEMMDGDEGKKMRQXXXXXXXXXXXXTAVGGQSYNNFDRLVKMV 286
+ +++ ++GKK+R+ G S NF LV +V
Sbjct: 404 SCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 133/286 (46%), Gaps = 21/286 (7%)
Query: 4 IRLRDLP-SFIRTTD-PNEIMFDFLGSEAQNCFKSSAIIFNTFDEFEHEALEVIASKFPN 61
++ DLP I+ D P M +G E +++A+ N+F + SKF
Sbjct: 185 LKASDLPEGVIKDIDVPFATMLHKMGLELP---RANAVAINSFATIHPLIENELNSKFKL 241
Query: 62 IYTVGPLPLLCKQVVEAKFRSFGSSLWKEDTDCLKWLDKRDANSVVYVNYGSITVMTEQH 121
+ VGP L Q ++ CL+WLD+ + +SVVY+++GS+
Sbjct: 242 LLNVGPFNLTTPQ-----------RKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHE 290
Query: 122 LTEFAWGLANSKRPFLWILRPDVVMGDSVVLPDEYFEEIKDRGFIVSWCNQEQVLSHPSV 181
LT A L PF+W R D LP + E K +G IV+W Q ++L H SV
Sbjct: 291 LTALAESLEECGFPFIWSFRGD----PKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSV 346
Query: 182 GAFLTHCGWNSTMESICGGVPVICWPFFAEQQTNCRYACTTWGIGMEVNHDV-KRGDIEA 240
G FLTH GWNS +E I GGVP+I PFF +Q N + IG+ V++ V + I+
Sbjct: 347 GVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKK 406
Query: 241 LVKEMMDGDEGKKMRQXXXXXXXXXXXXTAVGGQSYNNFDRLVKMV 286
++ M ++G MRQ G S +F L+++V
Sbjct: 407 ALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIV 452
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 25/233 (10%)
Query: 30 AQNCFKSSAIIFNTFDEFEHEALEVIAS---KFPNIYTVGPLPLLCKQVVEAKFRSFGSS 86
A+ + II NTF + E +++ + K P IY VGPL L K K
Sbjct: 206 AERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPL-LDLKGQPNPKLDQAQHD 264
Query: 87 LWKEDTDCLKWLDKRDANSVVYVNYGSITV-MTEQHLTEFAWGLANSKRPFLWILRPDVV 145
L LKWLD++ SVV++ +GS+ V + E A GL +S FLW
Sbjct: 265 L------ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----SN 313
Query: 146 MGDSVVLPDEYFE--EIKDRGFIVSWCNQEQVLSHPSVGAFLTHCGWNSTMESICGGVPV 203
+ V P+ + E E++ +G I W Q +VL+H ++G F++HCGWNS +ES+ GVP+
Sbjct: 314 SAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPI 373
Query: 204 ICWPFFAEQQTNCRYACTTWGIGMEVNHDVKRG-------DIEALVKEMMDGD 249
+ WP +AEQQ N WG+G+ + D ++G +IE +K++MD D
Sbjct: 374 LTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD 426
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 25/233 (10%)
Query: 30 AQNCFKSSAIIFNTFDEFEHEALEVIAS---KFPNIYTVGPLPLLCKQVVEAKFRSFGSS 86
A+ + II NTF + E +++ + K P IY VGPL L K K
Sbjct: 206 AERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPL-LDLKGQPNPKLDQAQHD 264
Query: 87 LWKEDTDCLKWLDKRDANSVVYVNYGSITV-MTEQHLTEFAWGLANSKRPFLWILRPDVV 145
L LKWLD++ SVV++ +GS+ V + E A GL +S FLW
Sbjct: 265 L------ILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----SN 313
Query: 146 MGDSVVLPDEYFE--EIKDRGFIVSWCNQEQVLSHPSVGAFLTHCGWNSTMESICGGVPV 203
+ V P+ + E E++ +G I W Q +VL+H ++G F++HCGWNS +ES+ GVP+
Sbjct: 314 SAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPI 373
Query: 204 ICWPFFAEQQTNCRYACTTWGIGMEVNHDVKRG-------DIEALVKEMMDGD 249
+ WP +AEQQ N WG+G+ + D ++G +IE +K++MD D
Sbjct: 374 LTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD 426
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 104 NSVVYVNYGS-ITVMTEQHLTEFAWGLANSKRPFLWILRPDVVMGDSVVLPDEYFEEIKD 162
N VV + GS ++ TE+ A LA + LW R D D++ L ++
Sbjct: 21 NGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLW--RFDGNKPDTLGLNTRLYK---- 74
Query: 163 RGFIVSWCNQEQVLSHPSVGAFLTHCGWNSTMESICGGVPVICWPFFAEQQTNCRY 218
W Q +L HP AF+TH G N E+I G+P + P FA+Q N +
Sbjct: 75 ------WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAH 124
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 169 WCNQEQVLSHPSVGAFLTHCGWNSTMESICGGVPVICWPFFAEQQTNCRYACTTWGIGME 228
W Q +L+ S AF+TH G STME++ VP++ P AEQ N G+G
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAER-IVELGLGRH 368
Query: 229 VNHD 232
+ D
Sbjct: 369 IPRD 372
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 88 WKEDTDCLKWLDKRD-ANSVVYVNYGSITVMTEQHLTEFAWGLANSKRPFLWILRPDVVM 146
+ E D WL RD A +VY+ G+ + T + L GLA L DV++
Sbjct: 225 FAEQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAG--------LDADVLV 276
Query: 147 GDSVVLPDEYFEEIKDRGFIVSWCNQEQVLSHPSVGAFLTHCGWNSTMESICGGVPVICW 206
L E+ + SW Q +L H V + H G +T+ ++ GVP + +
Sbjct: 277 ASGPSLDVSGLGEVPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSF 334
Query: 207 P 207
P
Sbjct: 335 P 335
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 169 WCNQEQVLSHPSVGAFLTHCGWNSTMESICGGVPVICWPFFAEQQTNCRYACTTWGIGME 228
W VL+H A LTH + +E+ GVP++ P FA + G+G
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 229 VNHD 232
+ D
Sbjct: 346 LRPD 349
>pdb|3IWG|A Chain A, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea.
pdb|3IWG|B Chain B, Acetyltransferase From Gnat Family From Colwellia
Psychrerythraea
Length = 276
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 119 EQHLTEFAWGLANSKRPFLWILRPDVVMGDSVVLPDEYFEEIKDRGFIVSWCNQEQVLSH 178
EQ LT++ L K F + + ++ L D+Y E D G IV+ N+ Q ++
Sbjct: 166 EQWLTQYYGNLIERKELFGYWHKGKLLAAGECRLFDQYQTEYADLGXIVAQSNRGQGIA- 224
Query: 179 PSVGAFLTHCGWNSTMESIC 198
V FLT + SIC
Sbjct: 225 KKVLTFLTKHAATQGLTSIC 244
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 6 LRDLPSFIRTTDPNEIMFDFLGSEAQNCFKSSAIIFNTFDEFEHEALEVIASKFPNIYTV 65
+RD +F R D ++FD G+ + F + I+ F+ E E L++ AS +
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIV--GFNHSEDELLQIAAS----LEAR 54
Query: 66 GPLPLLCKQVVEAKFRSFG 84
P+ V EA+ R FG
Sbjct: 55 SEHPIAAAIVEEAEKRGFG 73
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp
Binding Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 6 LRDLPSFIRTTDPNEIMFDFLGSEAQNCFKSSAIIFNTFDEFEHEALEVIASKFPNIYTV 65
+RD +F R D ++FD G+ + F + I+ F+ E E L++ AS +
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLTEGRFGVTDIV--GFNHSEDELLQIAAS----LEAR 54
Query: 66 GPLPLLCKQVVEAKFRSFG 84
P+ V EA+ R FG
Sbjct: 55 SEHPIAAAIVEEAEKRGFG 73
>pdb|1VBM|A Chain A, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
pdb|1VBM|B Chain B, Crystal Structure Of The Escherichia Coli Tyrosyl-Trna
Synthetase Complexed With Tyr-Ams
Length = 318
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 158 EEIKDRGFIVSWCNQEQVLSHPSVGAFLTHCGWNSTMESICGG--VPVICWPFFAE 211
+++++RG + ++E + + G +CG++ T +S+ G VP++C F +
Sbjct: 4 KQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQ 59
>pdb|1X8X|A Chain A, Tyrosyl T-Rna Synthetase From E.Coli Complexed With
Tyrosine
Length = 322
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 158 EEIKDRGFIVSWCNQEQVLSHPSVGAFLTHCGWNSTMESICGG--VPVICWPFFAE 211
+++++RG + ++E + + G +CG++ T +S+ G VP++C F +
Sbjct: 8 KQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTADSLHLGHLVPLLCLKRFQQ 63
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 154 DEYFEEIKDRGFIVSWCNQEQVLSHPS------VGAFLTHCGWNSTMESICGGVPVICWP 207
DEYFE I + S Q + L GA + + ++S I ++ P
Sbjct: 451 DEYFENII-QNLKFSQSKQLKKLREKVDKDEWISGAAVVNAFYSSGRNQIVFPAGILQPP 509
Query: 208 FFAEQQTNCRYACTTWGIGMEVNHDVKRG 236
FF+ QQ+N + GIGM + H++ G
Sbjct: 510 FFSAQQSN---SLNYGGIGMVIGHEITHG 535
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 159 EIKDRGFIVSWCNQEQVLSHPSVGAFLTHCGWNSTMESICGGV 201
E + R F WC E+++SH + A HC E + GV
Sbjct: 235 EARKRAF-ADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGV 276
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,905,393
Number of Sequences: 62578
Number of extensions: 350520
Number of successful extensions: 721
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 17
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)