BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022330
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LVH|D Chain D, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|E Chain E, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
pdb|3LVH|F Chain F, Crystal Structure Of A Clathrin Heavy Chain And Clathrin
Light Chain Complex
Length = 205
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%)
Query: 78 AGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKK 137
A G NG F G D + +E ++R+WR + RL++ +
Sbjct: 60 ASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA 119
Query: 138 EREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLF 178
+ M +E E+A++ E+ ++++ VE NK +NR +K F
Sbjct: 120 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 160
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 120 LREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYR--KRALAVE 165
L E +R+N +EQKE+ +E L+++ E+ E +V+ + +R LA++
Sbjct: 506 LHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 553
>pdb|2HRU|A Chain A, T. Maritima Purl Complexed With Adp
pdb|2HRY|A Chain A, T. Maritima Purl Complexed With Amppcp
Length = 603
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 164 VENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAEL 200
V K + + K+F W F E EK W+AI +L
Sbjct: 502 VNPQKVAKPKPSKVFAVGWNDFELEREKELWRAIRKL 538
>pdb|2HS0|A Chain A, T. Maritima Purl Complexed With Atp
pdb|2HS3|A Chain A, T. Maritima Purl Complexed With Fgar
pdb|2HS4|A Chain A, T. Maritima Purl Complexed With Fgar And Amppcp
Length = 603
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 164 VENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAEL 200
V K + + K+F W F E EK W+AI +L
Sbjct: 502 VNPQKVAKPKPSKVFAVGWNDFELEREKELWRAIRKL 538
>pdb|1VK3|A Chain A, Crystal Structure Of Phosphoribosylformylglycinamidine
Synthase Ii (Tm1246) From Thermotoga Maritima At 2.15 A
Resolution
Length = 615
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 176 KLFLASWEKFHGEAEKNYWKAIAEL 200
K+F W F E EK W+AI +L
Sbjct: 526 KVFAVGWNDFELEREKELWRAIRKL 550
>pdb|3D54|A Chain A, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|E Chain E, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|I Chain I, Stucture Of Purlqs From Thermotoga Maritima
Length = 629
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 176 KLFLASWEKFHGEAEKNYWKAIAEL 200
K+F W F E EK W+AI +L
Sbjct: 540 KVFAVGWNDFELEREKELWRAIRKL 564
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 73 PSIYAAGGGFSSFSPERNGKSFGGGFGA 100
P++ GG+ S E N +SF GGFGA
Sbjct: 332 PTVIVQEGGYHIESLEANARSFFGGFGA 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,738,526
Number of Sequences: 62578
Number of extensions: 318334
Number of successful extensions: 569
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 31
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)