BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022330
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4J5M9|CLC3_ARATH Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2
SV=1
Length = 258
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/260 (54%), Positives = 165/260 (63%), Gaps = 45/260 (17%)
Query: 13 DFMAYDPRLASQGFNSSFSQFEGDSVKDS---AGDSSPIFSSQSYGAGDEVFSSNPLPDT 69
+F AY+ R SQ F+SSFS F+ K+S GDSS P P+T
Sbjct: 28 NFTAYESRFQSQRFDSSFSNFDSQPEKESDLPCGDSS------------------PRPET 69
Query: 70 PSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAI 129
SPPSI F +DSILPPP+ M EEGFALREWRR NA+
Sbjct: 70 QSPPSI--------------------NSFDDTNDSILPPPSAMEKEEGFALREWRRLNAL 109
Query: 130 RLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEA 189
RLE+KEK+E+EM+++I+E AEQYK EFY KR + +ENNK NREKEK FL + EKF+ EA
Sbjct: 110 RLEEKEKEEKEMVQQILEAAEQYKAEFYSKRNVTIENNKKLNREKEKFFLENQEKFYAEA 169
Query: 190 EKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLK 249
+KN WKAIAELIP EVP IE RG K KK +I VIQGPKPGKPTDLSRMRQ+L KLK
Sbjct: 170 DKNNWKAIAELIPREVPVIENRGNK----KKTATITVIQGPKPGKPTDLSRMRQVLTKLK 225
Query: 250 HNPPPHMNPKPPPPPQTEPT 269
HNPP HM PK P P +P
Sbjct: 226 HNPPTHMKPKLPSPSGADPN 245
>sp|O04209|CLC2_ARATH Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1
Length = 258
Score = 228 bits (581), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/258 (54%), Positives = 178/258 (68%), Gaps = 22/258 (8%)
Query: 30 FSQFEGDS---VKDSAGDSSPIFSSQSYGAGDEVFSS--NPLPDTPSPPSIYAAGGGFSS 84
S FE DS + D A +S P+ S S+ A D FS+ L S ++AA S
Sbjct: 1 MSAFEDDSFVILNDDASESVPV--SGSFDATDS-FSAFDGSLQVEDSVDDVFAAPS--SD 55
Query: 85 FSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLRE 144
+ NG G G D ILPPP+EM ++EGFALREWRRQNAI+LE+KEK+E+E+L++
Sbjct: 56 YGAYSNGDGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQ 115
Query: 145 IIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYE 204
IIEEA+QYK EF++K + ENNKA+NREKEKL+L + EKF+ E+ KNYWKAIAEL+P E
Sbjct: 116 IIEEADQYKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKE 175
Query: 205 VPAIEK-RGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKHNPPPHMNPKPPPP 263
VP IEK RGKK+ Q+ KKP++ VIQGPKPGKPTDL+RMRQILVKLKHNPP H+ PP
Sbjct: 176 VPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHNPPSHLKLTSQPP 235
Query: 264 -----------PQTEPTK 270
P+T+PT+
Sbjct: 236 SEEAAAPPKNVPETKPTE 253
>sp|Q5Z402|CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica
GN=Os06g0731800 PE=2 SV=1
Length = 291
Score = 182 bits (462), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 109/188 (57%), Positives = 134/188 (71%), Gaps = 15/188 (7%)
Query: 67 PDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDS---ILPPPTEMPAEEGFALREW 123
PD PSP + PE NG F A D+ +LPPP +M A+EGF LREW
Sbjct: 49 PDAPSPFGM-----------PEANGSLHDDPFAAPDNDNGPVLPPPNQMGADEGFLLREW 97
Query: 124 RRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWE 183
RRQNAI LE+KEKKE+EM +II +A+++K F KR L VE +K NRE+EKL+LA+ E
Sbjct: 98 RRQNAILLEEKEKKEKEMRNQIILDAKEFKKAFVEKRKLNVETSKDQNREREKLYLANQE 157
Query: 184 KFHGEAEKNYWKAIAELIPYEVPAIEKRG-KKKDQEKKKPSIIVIQGPKPGKPTDLSRMR 242
KFH A+K YWKAI+ELIP+E+ IEKRG KK ++KKP I+VIQGPKPGKPTD+SRMR
Sbjct: 158 KFHAGADKQYWKAISELIPHEIANIEKRGAKKDKDKEKKPGIVVIQGPKPGKPTDMSRMR 217
Query: 243 QILVKLKH 250
QIL+KLKH
Sbjct: 218 QILLKLKH 225
>sp|Q7XKE9|CLC1_ORYSJ Clathrin light chain 1 OS=Oryza sativa subsp. japonica
GN=Os04g0679100 PE=2 SV=1
Length = 301
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 110/178 (61%), Positives = 129/178 (72%), Gaps = 11/178 (6%)
Query: 75 IYAAGGGFSS--FSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLE 132
I GGFS FSP+ GG D ILPPP +M AEEG LREWRRQNAI LE
Sbjct: 72 IGHVSGGFSPSPFSPD---PELDGG----DGPILPPPAQMGAEEGILLREWRRQNAIVLE 124
Query: 133 QKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKN 192
+KE+KE+E+ +I+ EAE++K FY KR E NK NRE+EK+F+A EKFH EA+K
Sbjct: 125 EKERKEKELRAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKFHAEADKQ 184
Query: 193 YWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQILVKLKH 250
YWK+I+ELIP+E+ IEKRGKK + KKPSI VIQGPKPGKPTDLSRMRQILVKLKH
Sbjct: 185 YWKSISELIPHEIATIEKRGKK--DKDKKPSITVIQGPKPGKPTDLSRMRQILVKLKH 240
>sp|Q9SKU1|CLC1_ARATH Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2
SV=1
Length = 338
Score = 177 bits (449), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 100 AEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRK 159
A D ILP P EM EEGF REWRR N I LE+KEKKE+EM +II EAE +K FY K
Sbjct: 92 ASDGPILPDPNEM-REEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEK 150
Query: 160 RALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEK 219
R +E NK NREKEKL+ A+ EKFH E +K+YWKAIAELIP EVP IEK+ KKD +
Sbjct: 151 RDKTIETNKTDNREKEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPD- 209
Query: 220 KKPSIIVIQGPKPGKPTDLSRMRQILVKLKHN 251
KKPS+ VIQGPKPGKPTDL RMRQI +KLK N
Sbjct: 210 KKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTN 241
>sp|Q6Z3A8|CLC3_ORYSJ Clathrin light chain 3 OS=Oryza sativa subsp. japonica
GN=Os07g0461500 PE=3 SV=1
Length = 363
Score = 177 bits (449), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 93/165 (56%), Positives = 121/165 (73%), Gaps = 8/165 (4%)
Query: 94 FGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYK 153
F G +D +LPPP M EEG REWRRQNA+ LE+KE+KERE EII EA+++K
Sbjct: 127 FAGAGDGDDGPVLPPPEAMK-EEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFK 185
Query: 154 VEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGK 213
F KR L + N+A NR++EKLFLA EKFHGEAEK YWKAIAE++P+E+P +EKRGK
Sbjct: 186 RSFAEKRKLNGDTNRAQNRDREKLFLAKQEKFHGEAEKQYWKAIAEMVPHEIPGLEKRGK 245
Query: 214 KKDQEK-------KKPSIIVIQGPKPGKPTDLSRMRQILVKLKHN 251
+++++ K+P ++V+QG KPGKPTDLSRMRQ+L+KLK
Sbjct: 246 RREKQSAEANAKAKQPGVVVVQGTKPGKPTDLSRMRQVLMKLKQT 290
>sp|P08082|CLCB_RAT Clathrin light chain B OS=Rattus norvegicus GN=Cltb PE=1 SV=1
Length = 229
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 41/193 (21%)
Query: 76 YAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKE 135
A+GGG NG F G D + +E ++R+WR + RL++ +
Sbjct: 59 LASGGGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELD 118
Query: 136 KKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLF-----------LASWEK 184
+ +E E+A++ E+ ++++ VE NK +NR +K F +AS E
Sbjct: 119 AASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEA 178
Query: 185 FHGEAEKNY----WKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPT-DLS 239
F E+++ W+ +A+L + PK K D+S
Sbjct: 179 FVKESKEETPGTEWEKVAQLCDF-------------------------NPKSSKQCKDVS 213
Query: 240 RMRQILVKLKHNP 252
R+R +L+ LK P
Sbjct: 214 RLRSVLMSLKQTP 226
>sp|Q6IRU5|CLCB_MOUSE Clathrin light chain B OS=Mus musculus GN=Cltb PE=2 SV=1
Length = 229
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 41/193 (21%)
Query: 76 YAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKE 135
A+G G S NG F G D + +E ++R+WR + RL++ +
Sbjct: 59 LASGAGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELD 118
Query: 136 KKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLF-----------LASWEK 184
+ +E E+A++ E+ ++++ VE NK +NR +K F +AS E
Sbjct: 119 AASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADTIGYVASEEA 178
Query: 185 FHGEAEKNY----WKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPT-DLS 239
F E+++ W+ +A+L + PK K D+S
Sbjct: 179 FVKESKEETPGTEWEKVAQLCDF-------------------------NPKSSKQCKDVS 213
Query: 240 RMRQILVKLKHNP 252
R+R +L+ LK P
Sbjct: 214 RLRSVLMSLKQTP 226
>sp|P09497|CLCB_HUMAN Clathrin light chain B OS=Homo sapiens GN=CLTB PE=1 SV=1
Length = 229
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 23/195 (11%)
Query: 63 SNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALRE 122
S+ P P P S G G NG F G D + +E ++R+
Sbjct: 50 SHAAPAQPGPTS----GAGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRK 105
Query: 123 WRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASW 182
WR + RL++ + + +E E+A++ E+ ++++ VE NK +NR +K F
Sbjct: 106 WREEQRKRLQELDAASKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF---- 161
Query: 183 EKFHGEAEKNYWKAIAELIPY----EVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPT-D 237
Y + A++I Y E E + + E +K + + PK K D
Sbjct: 162 ----------YQQPDADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKD 211
Query: 238 LSRMRQILVKLKHNP 252
+SR+R +L+ LK P
Sbjct: 212 VSRLRSVLMSLKQTP 226
>sp|P04975|CLCB_BOVIN Clathrin light chain B OS=Bos taurus GN=CLTB PE=1 SV=1
Length = 228
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 19/180 (10%)
Query: 78 AGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKK 137
A G NG F G D + +E ++R+WR + RL++ +
Sbjct: 60 ASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA 119
Query: 138 EREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAI 197
+ M +E E+A++ E+ ++++ VE NK +NR +K F Y +
Sbjct: 120 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF--------------YQQPD 165
Query: 198 AELIPY----EVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPT-DLSRMRQILVKLKHNP 252
A++I Y E E + + E +K + + PK K D+SR+R +L+ LK P
Sbjct: 166 ADIIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTP 225
>sp|O08585|CLCA_MOUSE Clathrin light chain A OS=Mus musculus GN=Clta PE=1 SV=2
Length = 235
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 21/184 (11%)
Query: 78 AGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKK 137
A GG + NG+ + G D + E ++R+WR + RLE +
Sbjct: 67 AAGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTERLEALDAN 126
Query: 138 EREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKNYWKAI 197
R+ E E+A + E+Y ++ ++ KA+NR ++ F Y +
Sbjct: 127 SRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAF--------------YKQPF 172
Query: 198 AELIPYEVPAIEKRGKKKDQ-----EKKKPSIIVIQGPKPGKPT-DLSRMRQILVKLKHN 251
A+LI Y V A E D+ E ++ + + PK K D+SRMR +L+ LK
Sbjct: 173 ADLIGY-VAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQA 231
Query: 252 PPPH 255
P H
Sbjct: 232 PLVH 235
>sp|P08081|CLCA_RAT Clathrin light chain A OS=Rattus norvegicus GN=Clta PE=1 SV=1
Length = 248
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 33/155 (21%)
Query: 119 ALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLF 178
++R+WR + RLE + R+ E E+A + E+Y ++ ++ KASNR ++ F
Sbjct: 109 SIRKWREEQTERLEALDANSRKQEAEWKEKAVKELEEWYARQDEQLQKTKASNRVADEAF 168
Query: 179 LASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPG----- 233
Y + A++I Y V I +Q ++ + I PG
Sbjct: 169 --------------YKQPFADVIGY-VTNINHPCYSLEQAAEEAFVNDIDESSPGTEWER 213
Query: 234 -------------KPTDLSRMRQILVKLKHNPPPH 255
+ D+SRMR +L+ LK P H
Sbjct: 214 VARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 248
>sp|P04973|CLCA_BOVIN Clathrin light chain A OS=Bos taurus GN=CLTA PE=1 SV=1
Length = 243
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 33/155 (21%)
Query: 119 ALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLF 178
++R+WR + RLE + R+ E E+A + E+Y ++ ++ KA+NR ++ F
Sbjct: 104 SIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAF 163
Query: 179 LASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPG----- 233
Y + A++I Y V I +Q ++ + I+ PG
Sbjct: 164 --------------YKQPFADVIGY-VTNINHPCYSLEQAAEEAFVNDIEESSPGTEWER 208
Query: 234 -------------KPTDLSRMRQILVKLKHNPPPH 255
+ D+SRMR +L+ LK P H
Sbjct: 209 VARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 243
>sp|P09496|CLCA_HUMAN Clathrin light chain A OS=Homo sapiens GN=CLTA PE=1 SV=1
Length = 248
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 33/155 (21%)
Query: 119 ALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLF 178
++R+WR + RLE + R+ E E+A + E+Y ++ ++ KA+NR ++ F
Sbjct: 109 SIRKWREEQMERLEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAF 168
Query: 179 LASWEKFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPG----- 233
Y + A++I Y V I +Q ++ + I PG
Sbjct: 169 --------------YKQPFADVIGY-VTNINHPCYSLEQAAEEAFVNDIDESSPGTEWER 213
Query: 234 -------------KPTDLSRMRQILVKLKHNPPPH 255
+ D+SRMR +L+ LK P H
Sbjct: 214 VARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 248
>sp|P17891|CLC1_YEAST Clathrin light chain OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CLC1 PE=1 SV=1
Length = 233
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 80/188 (42%), Gaps = 37/188 (19%)
Query: 73 PSIYAAGGGFSSFSPERNGK---SFGGGFGAEDDSI-----LPPPTEMPAEE-GFALREW 123
P I +A G SS ++NG S G G DD TE E+ + +W
Sbjct: 68 PDINSANGAVSS---DQNGSATVSSGNDNGEADDDFSTFEGANQSTESVKEDRSEVVDQW 124
Query: 124 RRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWE 183
+++ A+ + +K+ K+ E+ +E+ +EA ++ +FY E ++ + FL +
Sbjct: 125 KQRRAVEIHEKDLKDEELKKELQDEAIKHIDDFYDSYNKKKEQQLEDAAKEAEAFLKKRD 184
Query: 184 KFHGEAEKNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSIIVIQGPKPGKPTDLSRMRQ 243
+F G+ + W +LI + I I G D S++++
Sbjct: 185 EFFGQ-DNTTWDRALQLINQDDADI------------------IGG------RDRSKLKE 219
Query: 244 ILVKLKHN 251
IL++LK N
Sbjct: 220 ILLRLKGN 227
>sp|Q9VWA1|CLC_DROME Clathrin light chain OS=Drosophila melanogaster GN=Clc PE=2 SV=1
Length = 219
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 31/147 (21%)
Query: 107 PPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVEN 166
PPP+ EE +R+WR + RLE+K+ +E E+ +++++ ++ R+ ++
Sbjct: 96 PPPSR---EEPEKIRKWREEQKQRLEEKDIEEERKKEELRQQSKKELDDWLRQIGESISK 152
Query: 167 NKASNREKEKLFLASWEKFHGEAE-KNYWKAIAELIPYEVPAIEKRGKKKDQEKKKPSII 225
K ++R EK A+ E +G E W+ IA+L + P + K GK
Sbjct: 153 TKLASRNAEKQA-ATLE--NGTIEPGTEWERIAKLCDFN-PKVNKAGK------------ 196
Query: 226 VIQGPKPGKPTDLSRMRQILVKLKHNP 252
D+SRMR I + LK NP
Sbjct: 197 -----------DVSRMRSIYLHLKQNP 212
>sp|Q9C0D2|K1731_HUMAN Centrosomal protein KIAA1731 OS=Homo sapiens GN=KIAA1731 PE=2 SV=4
Length = 2601
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query: 113 PAEEGFALRE-WRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRK-----RALAVEN 166
P EE F L+E + R+ +RL Q ++ER++ +I E+ +Q + + + + RA E+
Sbjct: 15 PNEEAFILKEDYERRRKLRLLQVREQERDIALQIREDIKQRRNQQFTRLAEELRAEWEES 74
Query: 167 NKASNREKEKLFLASWEKF---HGEAEKN 192
+ EKL+LAS H +A++N
Sbjct: 75 QTQKIQNLEKLYLASLRSMGEGHRQAKEN 103
>sp|Q9D4V3|CCD83_MOUSE Coiled-coil domain-containing protein 83 OS=Mus musculus GN=Ccdc83
PE=2 SV=1
Length = 305
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 123 WRRQNAIRLEQKEKKERE---MLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFL 179
W +N I+ E KEK E + RE +EEA + K EF R++ +++ + E EKLFL
Sbjct: 70 WHIKNLIK-ELKEKNLDEAPIVTREEVEEAMKEKWEFERQQEASLKEMRIQINEAEKLFL 128
Query: 180 ASWEKFHGEAEKNYW 194
EK +EK YW
Sbjct: 129 ---EKL---SEKEYW 137
>sp|B6ENE2|IF2_ALISL Translation initiation factor IF-2 OS=Aliivibrio salmonicida
(strain LFI1238) GN=infB PE=3 SV=1
Length = 891
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 20 RLASQGFNSSFSQFEGDSVKDSAGDSSPIFSSQSYGAGDEVFSSNPLP---DTPSPPSIY 76
RL Q ++ ++ +GDSV + S I + +G+ DE S L T S S+
Sbjct: 19 RLLQQFSDAGINKKDGDSVSEGEKQSLLIHLKKEHGSADESASPTRLTLQRKTRSTLSVA 78
Query: 77 AAGGGFSSFSPE-RNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIR-LEQK 134
+GG E R +++ E++ +M E G + + A+R LEQK
Sbjct: 79 GSGGKSKDVQVEVRKKRTYVKASTLEEE---KKTEQMKVEAGDKAKRDAEEAAVRELEQK 135
Query: 135 EKKERE 140
K+E E
Sbjct: 136 AKREAE 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.129 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,952,445
Number of Sequences: 539616
Number of extensions: 6815339
Number of successful extensions: 49784
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 664
Number of HSP's that attempted gapping in prelim test: 41720
Number of HSP's gapped (non-prelim): 6696
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)