Query 022330
Match_columns 299
No_of_seqs 154 out of 242
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvh_D LCB, clathrin light cha 100.0 2.3E-32 8E-37 243.9 3.5 136 45-185 32-167 (205)
2 3lvg_D LCB, clathrin light cha 99.9 3.1E-27 1.1E-31 207.5 -1.9 112 88-202 55-166 (190)
3 1xi4_J LCA, clathrin light cha 99.8 5.9E-20 2E-24 140.7 9.8 66 114-179 5-70 (70)
4 4efa_E V-type proton ATPase su 73.7 40 0.0014 29.3 11.4 51 119-169 23-74 (233)
5 4efa_G V-type proton ATPase su 56.4 44 0.0015 27.3 7.7 41 126-166 20-61 (119)
6 4a17_V RPL7, 60S ribosomal pro 55.9 51 0.0017 30.0 8.7 43 123-165 19-61 (239)
7 3lvh_D LCB, clathrin light cha 48.5 23 0.0008 31.8 5.2 58 113-170 98-156 (205)
8 1xi4_J LCA, clathrin light cha 47.6 87 0.003 23.5 8.9 62 110-171 4-66 (70)
9 1wgx_A KIAA1903 protein; MYB D 36.5 30 0.001 26.2 3.4 32 171-203 12-43 (73)
10 3izc_e 60S ribosomal protein R 36.4 63 0.0021 29.4 6.1 43 122-164 21-63 (244)
11 3lvg_D LCB, clathrin light cha 34.7 33 0.0011 30.4 3.8 57 114-170 84-141 (190)
12 3frt_A Charged multivesicular 34.6 1.4E+02 0.0049 26.5 8.1 34 118-151 10-50 (218)
13 3uky_C Nuclear CAP-binding pro 34.5 15 0.0005 24.2 1.2 18 7-24 10-28 (32)
14 4h3z_A TRNA (guanine-N(1)-)-me 33.3 41 0.0014 31.5 4.4 20 115-134 224-243 (276)
15 3ky7_A TRNA (guanine-N(1)-)-me 33.3 48 0.0016 30.9 4.8 22 113-134 219-240 (269)
16 4f6r_C Stathmin-like domain R1 32.0 1.2E+02 0.004 24.0 6.2 29 155-183 56-84 (87)
17 2yus_A SWI/SNF-related matrix- 27.1 39 0.0013 25.4 2.6 28 171-203 22-49 (79)
18 2yum_A ZZZ3 protein, zinc fing 22.8 1.3E+02 0.0045 21.5 4.8 30 172-203 13-45 (75)
19 2cu7_A KIAA1915 protein; nucle 22.1 58 0.002 23.5 2.7 27 172-203 14-40 (72)
20 2es4_D Lipase chaperone; prote 22.0 3.4E+02 0.012 25.4 8.6 70 119-200 252-327 (332)
21 1x41_A Transcriptional adaptor 21.1 65 0.0022 22.4 2.7 28 172-203 13-40 (60)
22 3iz5_e 60S ribosomal protein L 20.9 96 0.0033 28.2 4.4 28 136-163 37-64 (244)
23 2cqq_A RSGI RUH-037, DNAJ homo 20.4 2E+02 0.0068 21.2 5.4 30 171-201 12-41 (72)
24 2gd5_A Charged multivesicular 20.3 3.7E+02 0.013 22.4 7.7 33 118-150 10-49 (179)
No 1
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=99.97 E-value=2.3e-32 Score=243.88 Aligned_cols=136 Identities=23% Similarity=0.261 Sum_probs=75.4
Q ss_pred CCCCcCCCCCCCCCCcccCCCCCCCCCCCCccCCCCCCCCCCCCcCCCccCCCCCCCCCCCCCCCCCCCcccchHHHHHH
Q 022330 45 SSPIFSSQSYGAGDEVFSSNPLPDTPSPPSIYAAGGGFSSFSPERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWR 124 (299)
Q Consensus 45 ~~~~~~~~~~~~~d~~f~~~~~~~~~~~~~~~~~~~g~~~~~~~~nG~~f~~~~g~sd~~~~p~p~~~~~eEpEaIREWR 124 (299)
.|-|.+ ++||++|+++.++++++..++... ||.+++++++||++||++|||+|+|+++++.+...+|||+||+||
T Consensus 32 eseIAG----IEnDegf~~~~~~~~~~~~~~~~~-~~~~~~~~~~ngd~~qesngp~d~yaai~qad~leeEPEsIRkWR 106 (205)
T 3lvh_D 32 ESEIAG----IENDEGFGAPAGSQGGLAQPGPAS-GASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWR 106 (205)
T ss_dssp ----------------------------------------------------------------CCSTTTBSTTHHHHHH
T ss_pred HHHhcc----cccccccCcccCCCcccccCCCCC-CCcccccccccchhhhhcCCCccchhhhccccccccCchHHHHHH
Confidence 344555 799999999999888777777554 588899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 022330 125 RQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKF 185 (299)
Q Consensus 125 Eeqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~Eknk~~NRe~Ek~FLa~rE~f 185 (299)
|+|++||++||+.+++++++++++|+++|++||++|+++++|+|.+||..|++||++|+.-
T Consensus 107 EEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~aeeeFlaqrd~~ 167 (205)
T 3lvh_D 107 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 167 (205)
T ss_dssp HHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCccch
Confidence 9999999999999999999999999999999999999999999999999999999999884
No 2
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=99.92 E-value=3.1e-27 Score=207.54 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=104.4
Q ss_pred CcCCCccCCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022330 88 ERNGKSFGGGFGAEDDSILPPPTEMPAEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENN 167 (299)
Q Consensus 88 ~~nG~~f~~~~g~sd~~~~p~p~~~~~eEpEaIREWREeqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~Ekn 167 (299)
..+|++|+++||++|+|+++++.++..+|||+||+|||+|++||++||+++++++++++++|+++|++||++|+++++++
T Consensus 55 ~~~Gd~~qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKn 134 (190)
T 3lvg_D 55 XXXXXXXXXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134 (190)
T ss_dssp HHCCCCCCCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHhhhhhhhcccCCChHHHHHhhcC
Q 022330 168 KASNREKEKLFLASWEKFHGEAEKNYWKAIAELIP 202 (299)
Q Consensus 168 k~~NRe~Ek~FLa~rE~f~~~~~gn~WERVaeLID 202 (299)
|++||+.|++||++|+.- ..|.+|.--.....
T Consensus 135 Ka~NR~aEEeFLaqRddt---tiGyV~~~~~~~~~ 166 (190)
T 3lvg_D 135 KINNRIADKAFYQQPDAD---IIXXXXXXXXXXXX 166 (190)
T ss_dssp HHTTCSSTTTSSHHHHHH---HCCTTTHHHHHHHC
T ss_pred HHHhHHHHHHHHhCCccc---hhhhhccccccccc
Confidence 999999999999999984 56999986554443
No 3
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=99.81 E-value=5.9e-20 Score=140.72 Aligned_cols=66 Identities=27% Similarity=0.419 Sum_probs=64.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 022330 114 AEEGFALREWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFL 179 (299)
Q Consensus 114 ~eEpEaIREWREeqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~Eknk~~NRe~Ek~FL 179 (299)
.+||++||+||++|+++|++||+.+++++++++++|+++||+||.+||.++++++++||..+++||
T Consensus 5 ~~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl 70 (70)
T 1xi4_J 5 QSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY 70 (70)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 369999999999999999999999999999999999999999999999999999999999999986
No 4
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=73.65 E-value=40 Score=29.32 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022330 119 ALREWRRQNAIRLEQKEKKE-REMLREIIEEAEQYKVEFYRKRALAVENNKA 169 (299)
Q Consensus 119 aIREWREeqa~rLeEKDk~E-~E~keeikeeAek~ideFY~~rn~k~Eknk~ 169 (299)
.|++=-++.+.+|..+-+.| ...+.++.++++..++..|++...+.+..+.
T Consensus 23 fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~ 74 (233)
T 4efa_E 23 FIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQ 74 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666554333 3457788889999999999988777765543
No 5
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=56.42 E-value=44 Score=27.31 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022330 126 QNAIRLEQKE-KKEREMLREIIEEAEQYKVEFYRKRALAVEN 166 (299)
Q Consensus 126 eqa~rLeEKD-k~E~E~keeikeeAek~ideFY~~rn~k~Ek 166 (299)
+++..|-..- +....++.+++++|+++|+.|-.+|+.....
T Consensus 20 k~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~ 61 (119)
T 4efa_G 20 KEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKE 61 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443332 3334557889999999999998888776543
No 6
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=55.87 E-value=51 Score=29.97 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022330 123 WRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVE 165 (299)
Q Consensus 123 WREeqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~E 165 (299)
|+..++++..+.....+..+..+.+.|+.|+.+|...+...+.
T Consensus 19 ~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~ir 61 (239)
T 4a17_V 19 LRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVD 61 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455666778889999777777766665543
No 7
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=48.55 E-value=23 Score=31.83 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=46.6
Q ss_pred CcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022330 113 PAEEGFALREWRRQNAIRLEQK-EKKEREMLREIIEEAEQYKVEFYRKRALAVENNKAS 170 (299)
Q Consensus 113 ~~eEpEaIREWREeqa~rLeEK-Dk~E~E~keeikeeAek~ideFY~~rn~k~Eknk~~ 170 (299)
..|--..-|+=+.++-.++.+. .++.++|+++++++++++-..+-.+-...+..|+..
T Consensus 98 EPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK~ka~NR~a 156 (205)
T 3lvh_D 98 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156 (205)
T ss_dssp STTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3355667777777776666555 578899999999999999999999999999888765
No 8
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=47.58 E-value=87 Score=23.54 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=48.9
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022330 110 TEMPAEEGFALREWRRQNAIRLEQKE-KKEREMLREIIEEAEQYKVEFYRKRALAVENNKASN 171 (299)
Q Consensus 110 ~~~~~eEpEaIREWREeqa~rLeEKD-k~E~E~keeikeeAek~ideFY~~rn~k~Eknk~~N 171 (299)
..+..+---.-|+=+..+-.+..+.. ++.++++++++++.+++.+.+-.+....+..|...-
T Consensus 4 ~~~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~ 66 (70)
T 1xi4_J 4 LQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVAD 66 (70)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555567777777777777764 778899999999999999999999999999988653
No 9
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=36.47 E-value=30 Score=26.20 Aligned_cols=32 Identities=9% Similarity=0.334 Sum_probs=21.1
Q ss_pred hHHHHHHHHhhhhhhhcccCCChHHHHHhhcCC
Q 022330 171 NREKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203 (299)
Q Consensus 171 NRe~Ek~FLa~rE~f~~~~~gn~WERVaeLID~ 203 (299)
++++++.|+.....|-. .....|++||..|.-
T Consensus 12 T~eE~k~fe~ALa~~~~-~tp~rWe~IA~~V~g 43 (73)
T 1wgx_A 12 NEKELQKLHCAFASLPK-HKPGFWSEVAAAVGS 43 (73)
T ss_dssp CHHHHHHHHHHHHHSCS-SSSSHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHCCC-CCccHHHHHHHHcCC
Confidence 35667777655555522 225689999999973
No 10
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=36.41 E-value=63 Score=29.43 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022330 122 EWRRQNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAV 164 (299)
Q Consensus 122 EWREeqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~ 164 (299)
+|+.++.++..++....++.+..+.+.|+.|+.++...+.+.+
T Consensus 21 ~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r~~i 63 (244)
T 3izc_e 21 KTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNII 63 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555545555666677888899977777665554443
No 11
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=34.70 E-value=33 Score=30.44 Aligned_cols=57 Identities=18% Similarity=0.143 Sum_probs=45.9
Q ss_pred cccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022330 114 AEEGFALREWRRQNAIRLEQK-EKKEREMLREIIEEAEQYKVEFYRKRALAVENNKAS 170 (299)
Q Consensus 114 ~eEpEaIREWREeqa~rLeEK-Dk~E~E~keeikeeAek~ideFY~~rn~k~Eknk~~ 170 (299)
.|---.-||=+.++-+++.+. .++++||+++++++.+++-..+-++-+..+..|+..
T Consensus 84 PEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR~a 141 (190)
T 3lvg_D 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141 (190)
T ss_dssp TTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345567777777766666554 588899999999999999999999999999888765
No 12
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=34.62 E-value=1.4e+02 Score=26.48 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 022330 118 FALREWRRQNAIRLEQK-------EKKEREMLREIIEEAEQ 151 (299)
Q Consensus 118 EaIREWREeqa~rLeEK-------Dk~E~E~keeikeeAek 151 (299)
|.+|+|.+.-...+.+. ++.|+..+.+|++.|++
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakk 50 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKK 50 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 68999988666555543 35555566677766663
No 13
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=34.55 E-value=15 Score=24.17 Aligned_cols=18 Identities=28% Similarity=0.901 Sum_probs=14.4
Q ss_pred ccCCCC-CCcccCccccCC
Q 022330 7 GSFGDD-DFMAYDPRLASQ 24 (299)
Q Consensus 7 ~~~~~~-~~~~y~~~~~s~ 24 (299)
+-|||| ||--|-||.|-.
T Consensus 10 ~dfd~ddgYrDfrPR~pKR 28 (32)
T 3uky_C 10 GDFDEDENYRDFRPRMPKR 28 (32)
T ss_pred ccCcccccccccccccccc
Confidence 468855 999999999853
No 14
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A*
Probab=33.31 E-value=41 Score=31.47 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=15.2
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 022330 115 EEGFALREWRRQNAIRLEQK 134 (299)
Q Consensus 115 eEpEaIREWREeqa~rLeEK 134 (299)
.--..|++||++++++.-.+
T Consensus 224 GnH~~I~~WR~~qsl~rT~~ 243 (276)
T 4h3z_A 224 GHHAEIEQWRRREALRNTWL 243 (276)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 34568999999999876543
No 15
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0
Probab=33.28 E-value=48 Score=30.94 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=16.5
Q ss_pred CcccchHHHHHHHHHHHHHHHH
Q 022330 113 PAEEGFALREWRRQNAIRLEQK 134 (299)
Q Consensus 113 ~~eEpEaIREWREeqa~rLeEK 134 (299)
...--..|++||++|+.+.-.+
T Consensus 219 lSGnH~~I~~WR~~qsl~rT~~ 240 (269)
T 3ky7_A 219 LSGNHANIDAWRHEQKLIRTYN 240 (269)
T ss_dssp GSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999876543
No 16
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=32.02 E-value=1.2e+02 Score=23.96 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhhh
Q 022330 155 EFYRKRALAVENNKASNREKEKLFLASWE 183 (299)
Q Consensus 155 eFY~~rn~k~Eknk~~NRe~Ek~FLa~rE 183 (299)
+.+.-++.++-+..+.+|+++++-+.+.|
T Consensus 56 ERRks~EA~~L~~Laekreh~~EV~k~~~ 84 (87)
T 4f6r_C 56 ERRKAHFAAMLERLQEKDKHAEEVRKNKE 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 55555666666777788888887776654
No 17
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=27.14 E-value=39 Score=25.41 Aligned_cols=28 Identities=21% Similarity=0.501 Sum_probs=20.3
Q ss_pred hHHHHHHHHhhhhhhhcccCCChHHHHHhhcCC
Q 022330 171 NREKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203 (299)
Q Consensus 171 NRe~Ek~FLa~rE~f~~~~~gn~WERVaeLID~ 203 (299)
+.++++.||..-+.+ |.-|..|+++|.-
T Consensus 22 T~eEd~~Ll~~v~~~-----G~~W~~IA~~v~~ 49 (79)
T 2yus_A 22 TEQETLLLLEALEMY-----KDDWNKVSEHVGS 49 (79)
T ss_dssp CHHHHHHHHHHHHHS-----SSCHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHh-----CCCHHHHHHHcCC
Confidence 346677777665554 5889999999863
No 18
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.85 E-value=1.3e+02 Score=21.49 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhhhhcccC---CChHHHHHhhcCC
Q 022330 172 REKEKLFLASWEKFHGEAE---KNYWKAIAELIPY 203 (299)
Q Consensus 172 Re~Ek~FLa~rE~f~~~~~---gn~WERVaeLID~ 203 (299)
.++++.|+..-..+- .+ .+-|..|++++.-
T Consensus 13 ~eEd~~L~~~v~~~g--~~~~~~~~W~~IA~~~~~ 45 (75)
T 2yum_A 13 VEEQKKLEQLLIKYP--PEEVESRRWQKIADELGN 45 (75)
T ss_dssp HHHHHHHHHHHHHSC--CCSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhC--CCCCCcccHHHHHHHhCC
Confidence 355566665444431 11 1789999999863
No 19
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.08 E-value=58 Score=23.46 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhhhhhcccCCChHHHHHhhcCC
Q 022330 172 REKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203 (299)
Q Consensus 172 Re~Ek~FLa~rE~f~~~~~gn~WERVaeLID~ 203 (299)
.++++.|+.....+ |+-|..|+++|.-
T Consensus 14 ~eEd~~l~~~~~~~-----G~~W~~Ia~~~~~ 40 (72)
T 2cu7_A 14 IEEKELFEQGLAKF-----GRRWTKISKLIGS 40 (72)
T ss_dssp HHHHHHHHHHHHHT-----CSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHH-----CcCHHHHHHHcCC
Confidence 35566666544443 7799999998864
No 20
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=21.95 E-value=3.4e+02 Score=25.40 Aligned_cols=70 Identities=10% Similarity=0.068 Sum_probs=34.2
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhcccCCC-
Q 022330 119 ALREWRR-----QNAIRLEQKEKKEREMLREIIEEAEQYKVEFYRKRALAVENNKASNREKEKLFLASWEKFHGEAEKN- 192 (299)
Q Consensus 119 aIREWRE-----eqa~rLeEKDk~E~E~keeikeeAek~ideFY~~rn~k~Eknk~~NRe~Ek~FLa~rE~f~~~~~gn- 192 (299)
.|+.+|. +-+.||++.|+....|...+- .|..+|..-. ..--..-+++...-+=|+..+ +.+
T Consensus 252 ~~~~~R~~~vG~EaA~RL~~Ldqqra~wq~r~~--------~Y~~eR~~I~-~~~Ls~~~kq~qI~~LR~q~F---~~~~ 319 (332)
T 2es4_D 252 QMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQ--------AYAAERDRIA-AQGLAPQDRDARIAQLRQQTF---TAPG 319 (332)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHC---CSTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhC---CCHH
Confidence 4455553 456666666666666665542 5555554433 111111122222222233322 345
Q ss_pred hHHHHHhh
Q 022330 193 YWKAIAEL 200 (299)
Q Consensus 193 ~WERVaeL 200 (299)
+|-||.-|
T Consensus 320 E~~Rv~al 327 (332)
T 2es4_D 320 EAIRAASL 327 (332)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999765
No 21
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.06 E-value=65 Score=22.44 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhhhhcccCCChHHHHHhhcCC
Q 022330 172 REKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203 (299)
Q Consensus 172 Re~Ek~FLa~rE~f~~~~~gn~WERVaeLID~ 203 (299)
.++++.++..-+.+ +.+-|..|++.|.-
T Consensus 13 ~eED~~L~~~v~~~----G~~~W~~Ia~~~~~ 40 (60)
T 1x41_A 13 AQEEMALLEAVMDC----GFGNWQDVANQMCT 40 (60)
T ss_dssp HHHHHHHHHHHHHT----CTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH----CcCcHHHHHHHhCC
Confidence 35566666544443 22689999999964
No 22
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=20.87 E-value=96 Score=28.21 Aligned_cols=28 Identities=29% Similarity=0.241 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022330 136 KKEREMLREIIEEAEQYKVEFYRKRALA 163 (299)
Q Consensus 136 k~E~E~keeikeeAek~ideFY~~rn~k 163 (299)
...++.+..+.+.|+.|+.++...+.+.
T Consensus 37 ~~~k~~r~~~~~rae~~~~ey~~~~r~~ 64 (244)
T 3iz5_e 37 IKAAENTKVIYARAEQYAGEYEAQDKEL 64 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777888886666665544433
No 23
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=20.36 E-value=2e+02 Score=21.16 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=19.7
Q ss_pred hHHHHHHHHhhhhhhhcccCCChHHHHHhhc
Q 022330 171 NREKEKLFLASWEKFHGEAEKNYWKAIAELI 201 (299)
Q Consensus 171 NRe~Ek~FLa~rE~f~~~~~gn~WERVaeLI 201 (299)
++++++.|......|-. ...+-|++||+.+
T Consensus 12 T~eE~k~fe~al~~~p~-~t~~RW~~IA~~l 41 (72)
T 2cqq_A 12 TEEDLSQLTRSMVKFPG-GTPGRWEKIAHEL 41 (72)
T ss_dssp CHHHHHHHHHHHHHSCT-TCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-CCCcHHHHHHHHh
Confidence 45667777665555521 1146899999997
No 24
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=20.31 E-value=3.7e+02 Score=22.42 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 022330 118 FALREWRRQNAIRLEQKE-------KKEREMLREIIEEAE 150 (299)
Q Consensus 118 EaIREWREeqa~rLeEKD-------k~E~E~keeikeeAe 150 (299)
|.||+|...-...+.+.| +.++..+.+|++.++
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k 49 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAK 49 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999887776655543 333334445544443
Done!