Query 022330
Match_columns 299
No_of_seqs 154 out of 242
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 03:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022330.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022330hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uala_ c.116.1.4 (A:) tRNA(m1 29.0 14 0.00099 32.0 2.6 23 112-134 198-220 (252)
2 d1gv2a2 a.4.1.3 (A:144-190) c- 28.0 21 0.0015 22.7 2.8 27 172-203 6-32 (47)
3 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 26.7 20 0.0015 23.6 2.7 27 172-203 7-33 (65)
4 d2cjja1 a.4.1.3 (A:8-70) Radia 20.7 40 0.0029 22.2 3.3 31 172-203 6-36 (63)
5 d1v54h_ a.51.1.1 (H:) Cytochro 18.9 17 0.0012 26.5 1.0 9 16-24 9-17 (79)
6 d1q6ha_ d.26.1.1 (A:) Peptidyl 16.6 1.3E+02 0.0097 23.6 6.3 27 155-181 69-95 (210)
7 d1o4va_ c.23.8.1 (A:) N5-CAIR 14.0 73 0.0053 25.5 3.9 23 116-138 135-157 (169)
8 d1g8qa_ a.135.1.1 (A:) CD81 ex 14.0 66 0.0048 23.2 3.3 29 142-174 4-33 (90)
9 d1m7va_ d.174.1.1 (A:) Nitric 13.4 75 0.0055 28.5 4.1 20 142-161 4-23 (363)
10 d1pixa2 c.14.1.4 (A:1-287) Glu 13.1 99 0.0072 26.0 4.7 14 190-203 59-72 (287)
No 1
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=28.97 E-value=14 Score=31.96 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=17.4
Q ss_pred CCcccchHHHHHHHHHHHHHHHH
Q 022330 112 MPAEEGFALREWRRQNAIRLEQK 134 (299)
Q Consensus 112 ~~~eEpEaIREWREeqa~rLeEK 134 (299)
....--..|++||.+++++.-.+
T Consensus 198 LlSG~H~~I~~Wr~~~sl~~T~~ 220 (252)
T d1uala_ 198 LMSGHHEEIRKWRLKQSLQRTWL 220 (252)
T ss_dssp GGSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhCCChHHHHHHHHHHHHHHHHH
Confidence 34456779999999998876654
No 2
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.00 E-value=21 Score=22.73 Aligned_cols=27 Identities=26% Similarity=0.656 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhhhhcccCCChHHHHHhhcCC
Q 022330 172 REKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203 (299)
Q Consensus 172 Re~Ek~FLa~rE~f~~~~~gn~WERVaeLID~ 203 (299)
.++++.++.....+ |+-|-.|+++++-
T Consensus 6 ~eED~~L~~~v~~~-----G~~W~~Ia~~~~g 32 (47)
T d1gv2a2 6 EEEDRIIYQAHKRL-----GNRWAEIAKLLPG 32 (47)
T ss_dssp HHHHHHHHHHHHHH-----SSCHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHH-----hhHHHHHHhHcCC
Confidence 45566666544443 7789999998763
No 3
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.74 E-value=20 Score=23.59 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhhhhhcccCCChHHHHHhhcCC
Q 022330 172 REKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203 (299)
Q Consensus 172 Re~Ek~FLa~rE~f~~~~~gn~WERVaeLID~ 203 (299)
.++++.|+..-..+ |.-|..|++++.-
T Consensus 7 ~eEd~~l~~~~~~~-----G~~W~~Ia~~~~~ 33 (65)
T d2cu7a1 7 IEEKELFEQGLAKF-----GRRWTKISKLIGS 33 (65)
T ss_dssp HHHHHHHHHHHHHT-----CSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHh-----cchHHHHHHHcCC
Confidence 46667777554443 7899999999863
No 4
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=20.67 E-value=40 Score=22.18 Aligned_cols=31 Identities=13% Similarity=0.323 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhhhhhcccCCChHHHHHhhcCC
Q 022330 172 REKEKLFLASWEKFHGEAEKNYWKAIAELIPY 203 (299)
Q Consensus 172 Re~Ek~FLa~rE~f~~~~~gn~WERVaeLID~ 203 (299)
.++++.|+..-..|- ....+.|..|+++|.-
T Consensus 6 ~eEd~~L~~~v~~~~-~~~~~~W~~Ia~~l~g 36 (63)
T d2cjja1 6 AKENKAFERALAVYD-KDTPDRWANVARAVEG 36 (63)
T ss_dssp HHHHHHHHHHHHHSC-TTCTTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHC-CCCchHHHHHHHHcCC
Confidence 456666665544441 1224579999999973
No 5
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=18.86 E-value=17 Score=26.46 Aligned_cols=9 Identities=33% Similarity=0.781 Sum_probs=5.5
Q ss_pred ccCccccCC
Q 022330 16 AYDPRLASQ 24 (299)
Q Consensus 16 ~y~~~~~s~ 24 (299)
.||||||.|
T Consensus 9 P~D~RFPn~ 17 (79)
T d1v54h_ 9 PFDSRFPNQ 17 (79)
T ss_dssp CCCTTSCSS
T ss_pred CCCccCCcc
Confidence 455666665
No 6
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}
Probab=16.65 E-value=1.3e+02 Score=23.59 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhh
Q 022330 155 EFYRKRALAVENNKASNREKEKLFLAS 181 (299)
Q Consensus 155 eFY~~rn~k~Eknk~~NRe~Ek~FLa~ 181 (299)
.++++++.++.+....|++..++|++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (210)
T d1q6ha_ 69 RVKSSAQAKMEKDAADNEAKGKEYREK 95 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHhhhhHHHHHHh
Confidence 344555566666667777777888853
No 7
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=14.04 E-value=73 Score=25.49 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 022330 116 EGFALREWRRQNAIRLEQKEKKE 138 (299)
Q Consensus 116 EpEaIREWREeqa~rLeEKDk~E 138 (299)
--+.|++||+++.+.+.+++++=
T Consensus 135 i~~kl~~~r~~~~~~v~~~~~~l 157 (169)
T d1o4va_ 135 IARKVKEYKERMKREVLEKAQRL 157 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999998888776543
No 8
>d1g8qa_ a.135.1.1 (A:) CD81 extracellular domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.01 E-value=66 Score=23.17 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHH
Q 022330 142 LREIIEEAEQYKVEFYRK-RALAVENNKASNREK 174 (299)
Q Consensus 142 keeikeeAek~ideFY~~-rn~k~Eknk~~NRe~ 174 (299)
+.+++++.. +||.. |++-+......|+.+
T Consensus 4 kd~V~~ev~----~FY~~~Y~~y~~~~~~~~~k~ 33 (90)
T d1g8qa_ 4 KDQIAKDVK----QFYDQALQQAVVDDDANNAKA 33 (90)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHH----HHHHHHHHHHhhcCCcchHHH
Confidence 345555555 88877 666555555444443
No 9
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Bacillus subtilis [TaxId: 1423]}
Probab=13.42 E-value=75 Score=28.54 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022330 142 LREIIEEAEQYKVEFYRKRA 161 (299)
Q Consensus 142 keeikeeAek~ideFY~~rn 161 (299)
.+.++++|+++|+.||.+.+
T Consensus 4 ~e~l~~eA~~Fi~~~y~e~~ 23 (363)
T d1m7va_ 4 MEILWNEAKAFIAECYQELG 23 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999998765
No 10
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}
Probab=13.10 E-value=99 Score=26.02 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=11.7
Q ss_pred CCChHHHHHhhcCC
Q 022330 190 EKNYWKAIAELIPY 203 (299)
Q Consensus 190 ~gn~WERVaeLID~ 203 (299)
.-+.||||..|||-
T Consensus 59 kltaReRI~~LlD~ 72 (287)
T d1pixa2 59 ELTALQRIEKLVEP 72 (287)
T ss_dssp CCCHHHHHHHHSCT
T ss_pred CCCHHHHHHHHcCC
Confidence 36789999999984
Done!