BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022331
         (299 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DT4|A Chain A, Crystal Structure Of Pyrococcus Horikoshii A Plant- And
           Prokaryote- Conserved (Ppc) Protein At 1.60 Resolution
          Length = 143

 Score = 30.4 bits (67), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTL---RQPSDPSAVMAIHGR 158
           ++++  +  G ++   + NF ++      +++G GT+ N  +    +      V+ + G 
Sbjct: 10  RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGS 69

Query: 159 FEILSLTG 166
           +E++SL G
Sbjct: 70  YELISLIG 77


>pdb|1XSO|A Chain A, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn
           Superoxide Dismutase B Determined By X-Ray
           Crystallography At 1.5 Angstroms Resolution
 pdb|1XSO|B Chain B, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn
           Superoxide Dismutase B Determined By X-Ray
           Crystallography At 1.5 Angstroms Resolution
          Length = 150

 Score = 29.3 bits (64), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 127 RGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILS 163
           + VCVL+GSG V  V   +  D  AV ++ G+ E L+
Sbjct: 2   KAVCVLAGSGDVKGVVHFEQQDEGAV-SVEGKIEGLT 37


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.132    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,065,909
Number of Sequences: 62578
Number of extensions: 155872
Number of successful extensions: 348
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 3
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)