BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022331
         (299 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score =  167 bits (423), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 127/159 (79%), Gaps = 9/159 (5%)

Query: 74  RRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEIANGADVAETLANFARRRQRGVCVLS 133
           +RPRGRPPGSKNK KPPI VTRDSPNAL+SHV+E++ GAD+ E+++ +ARRR RGV VL 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLG 145

Query: 134 GSGTVTNVTLRQPSDPSAVM---------AIHGRFEILSLTGAFLPGPAPPGSTGLTIYL 184
           G+GTV+NVTLRQP  P              +HGRFEILSLTG  LP PAPPG+ GL+I+L
Sbjct: 146 GNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFL 205

Query: 185 AGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPL 223
           AGGQGQVVGGSVV  L+AS PV+++AA+FSNA +ERLP+
Sbjct: 206 AGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPI 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.135    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,968,921
Number of Sequences: 539616
Number of extensions: 8228499
Number of successful extensions: 187401
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1997
Number of HSP's successfully gapped in prelim test: 742
Number of HSP's that attempted gapping in prelim test: 64972
Number of HSP's gapped (non-prelim): 51386
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)