Query 022331
Match_columns 299
No_of_seqs 227 out of 511
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 02:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 8.6E-29 1.9E-33 204.2 11.1 117 101-220 1-120 (120)
2 COG1661 Predicted DNA-binding 99.9 2.5E-25 5.3E-30 191.3 13.8 123 98-224 6-131 (141)
3 PF02178 AT_hook: AT hook moti 88.4 0.2 4.3E-06 27.7 0.6 13 74-86 1-13 (13)
4 smart00384 AT_hook DNA binding 74.3 2.1 4.6E-05 27.9 1.5 15 74-88 1-15 (26)
5 PF02196 RBD: Raf-like Ras-bin 48.4 1E+02 0.0022 23.6 6.8 43 101-145 10-54 (71)
6 cd01817 RGS12_RBD Ubiquitin do 47.0 68 0.0015 25.5 5.7 44 104-147 12-57 (73)
7 PRK11675 LexA regulated protei 46.2 19 0.00041 29.6 2.6 33 94-128 43-75 (90)
8 PF03306 AAL_decarboxy: Alpha- 43.9 99 0.0021 28.8 7.3 113 105-222 83-207 (220)
9 smart00455 RBD Raf-like Ras-bi 43.6 89 0.0019 23.9 5.8 45 102-146 10-56 (70)
10 cd01760 RBD Ubiquitin-like dom 35.9 81 0.0018 24.5 4.6 37 102-138 10-48 (72)
11 TIGR01252 acetolac_decarb alph 34.3 3.2E+02 0.007 25.8 9.1 92 127-222 106-209 (232)
12 PF14869 DUF4488: Domain of un 24.8 87 0.0019 27.5 3.4 35 128-164 28-62 (133)
13 PRK09469 glnA glutamine synthe 24.0 16 0.00034 37.4 -1.5 121 103-223 181-325 (469)
14 PRK08179 prfH peptide chain re 21.8 1.7E+02 0.0037 27.1 4.9 42 104-145 2-58 (200)
15 PF03869 Arc: Arc-like DNA bin 21.1 1E+02 0.0023 22.2 2.7 27 101-129 4-30 (50)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.96 E-value=8.6e-29 Score=204.25 Aligned_cols=117 Identities=33% Similarity=0.533 Sum_probs=98.0
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCC--CCCceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331 101 LKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPS--DPSAVMAIHGRFEILSLTGAFLPGPAPPGST 178 (299)
Q Consensus 101 mr~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~--~~g~~vtleG~FEILSLsGtis~~~~~p~~~ 178 (299)
||+|++||++||||+++|.+||+++++..|+||++|+|++|+|++++ ..|.+++++|+|||+||+|||+..+++| +.
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~~-~~ 79 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDGKP-FV 79 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETTEE-EE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCCCC-cc
Confidence 79999999999999999999999999999999999999999999973 3478899999999999999999866666 89
Q ss_pred eEEEEEeCCCCcEEceecc-cceeeccceEEEEeeecCcceee
Q 022331 179 GLTIYLAGGQGQVVGGSVV-GSLVASGPVMVIAATFSNATYER 220 (299)
Q Consensus 179 HLHISLAg~dGqViGGHL~-G~LIAAT~V~VI~asF~n~~yeR 220 (299)
||||+|++.||+|+||||. |.++++..+.|+ .+....++|
T Consensus 80 HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~--~~~~~~~~~ 120 (120)
T PF03479_consen 80 HLHISLADPDGQVFGGHLLEGTVFATAEVVIT--ELSGINFTR 120 (120)
T ss_dssp EEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEE--EETTEEEEE
T ss_pred eEEEEEECCCCeEEeeEeCCCEEeEEEEEEEE--EecCccccC
Confidence 9999999999999999999 555343333333 455555554
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.93 E-value=2.5e-25 Score=191.28 Aligned_cols=123 Identities=19% Similarity=0.276 Sum_probs=112.5
Q ss_pred CCCceEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCC---CCceeeeeeeEEEEEeeeeccCCCCC
Q 022331 98 PNALKSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSD---PSAVMAIHGRFEILSLTGAFLPGPAP 174 (299)
Q Consensus 98 ~~~mr~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~---~g~~vtleG~FEILSLsGtis~~~~~ 174 (299)
.+.-|.+++||++|+|+++.|.+||+++++..++++|+|+|++++|++++. +|.++++.++||||||.|||+.++
T Consensus 6 ~~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~-- 83 (141)
T COG1661 6 SSSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD-- 83 (141)
T ss_pred cccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC--
Confidence 355689999999999999999999999998889999999999999999874 488999999999999999999987
Q ss_pred CCCCeEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeecccc
Q 022331 175 PGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLD 224 (299)
Q Consensus 175 p~~~HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~ 224 (299)
| +.|||++|++++|.++||||+++.|.. +++|+|-.+....++|.+++
T Consensus 84 p-~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~ 131 (141)
T COG1661 84 P-FVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP 131 (141)
T ss_pred C-cEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence 5 899999999999999999999888888 45577778888889999887
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=88.35 E-value=0.2 Score=27.68 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=4.2
Q ss_pred CCCCCCCCCCCCC
Q 022331 74 RRPRGRPPGSKNK 86 (299)
Q Consensus 74 rrpRGRP~GSknK 86 (299)
+|+||||+.+..|
T Consensus 1 ~r~RGRP~k~~~~ 13 (13)
T PF02178_consen 1 KRKRGRPRKNAKK 13 (13)
T ss_dssp S--SS--TT----
T ss_pred CCcCCCCccccCC
Confidence 5899999987654
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=74.27 E-value=2.1 Score=27.85 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCC
Q 022331 74 RRPRGRPPGSKNKPK 88 (299)
Q Consensus 74 rrpRGRP~GSknKpk 88 (299)
+|+||||+..+....
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 589999998776543
No 5
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=48.44 E-value=1e+02 Score=23.61 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=33.3
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHHcC--ccceEEEeeeeeeeEEecC
Q 022331 101 LKSHVMEIANGADVAETLANFARRRQ--RGVCVLSGSGTVTNVTLRQ 145 (299)
Q Consensus 101 mr~hVLrL~~GeDIvesI~~Fa~r~~--~ai~VLSgiGaVsnVTLrq 145 (299)
-++-++.+.+|+-|.+.|...|++++ ...|.+.-+| .+-.|-+
T Consensus 10 ~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~--~~k~l~~ 54 (71)
T PF02196_consen 10 GQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG--EKKPLDW 54 (71)
T ss_dssp TEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE--EEEEE-T
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC--CCccccC
Confidence 35678899999999999999999999 5788888888 4444443
No 6
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=47.05 E-value=68 Score=25.47 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=34.0
Q ss_pred EEEEeCCCccHHHHHHHHHHHcC--ccceEEEeeeeeeeEEecCCC
Q 022331 104 HVMEIANGADVAETLANFARRRQ--RGVCVLSGSGTVTNVTLRQPS 147 (299)
Q Consensus 104 hVLrL~~GeDIvesI~~Fa~r~~--~ai~VLSgiGaVsnVTLrqp~ 147 (299)
-++.+.+|+-|.+.|...|++++ ...|.+.-.|.=.-+.+.+..
T Consensus 12 T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~qD~ 57 (73)
T cd01817 12 TVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQDS 57 (73)
T ss_pred EEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCCcc
Confidence 47899999999999999999999 466777666665555555543
No 7
>PRK11675 LexA regulated protein; Provisional
Probab=46.20 E-value=19 Score=29.60 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=26.5
Q ss_pred ecCCCCCceEEEEEeCCCccHHHHHHHHHHHcCcc
Q 022331 94 TRDSPNALKSHVMEIANGADVAETLANFARRRQRG 128 (299)
Q Consensus 94 t~~s~~~mr~hVLrL~~GeDIvesI~~Fa~r~~~a 128 (299)
.+|-..+++.+-|+|+ +|+++.|.+||.++++.
T Consensus 43 ~rdk~~glKRveVKld--edl~ekL~eyAe~~nit 75 (90)
T PRK11675 43 KRDKVRGLKRVELKLN--ADLVDALNELAEARNIS 75 (90)
T ss_pred HHHHHcCceeEEEEEC--HHHHHHHHHHHHHcCCC
Confidence 4666788887766665 89999999999998853
No 8
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=43.88 E-value=99 Score=28.82 Aligned_cols=113 Identities=17% Similarity=0.266 Sum_probs=59.3
Q ss_pred EEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCC---CCc----eeeeeeeEEEEEeeeecc----CCCC
Q 022331 105 VMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSD---PSA----VMAIHGRFEILSLTGAFL----PGPA 173 (299)
Q Consensus 105 VLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~---~g~----~vtleG~FEILSLsGtis----~~~~ 173 (299)
+.....-++|.+.|.+.... ......+-.-|..+.|++|-... +|. ++.-+-.||.--+.||+. |.--
T Consensus 83 ~~~~~~~~~l~~~l~~~~~~-~N~f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~ 161 (220)
T PF03306_consen 83 LDSPMSKEELEAKLDELLPS-KNLFYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYM 161 (220)
T ss_dssp -EEEEEHHHHHHHHHHHSS--TTS-EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGG
T ss_pred cCCCCCHHHHHHHHHHhcCC-CceEEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhc
Confidence 44555567777777777653 35578888899999999995332 232 222355677777777765 3210
Q ss_pred -CCCCCeEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeecc
Q 022331 174 -PPGSTGLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLP 222 (299)
Q Consensus 174 -~p~~~HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP 222 (299)
.-...++|+.+-+. -+.+||||....+....+.|- .+.+. --++|
T Consensus 162 ~gi~v~G~HlHFls~-Dr~~GGHvld~~~~~~~v~~~--~~~~~-~l~lP 207 (220)
T PF03306_consen 162 GGINVPGFHLHFLSD-DRTFGGHVLDFELDNGTVEID--VFDDF-ELELP 207 (220)
T ss_dssp BTTB-CEEEEEEEET-TSS-EEEEEEEEEEEEEEEEE--E-SEE-EEE--
T ss_pred cccCCceEEEEEecC-CCCCCCCeEEEEeceEEEEEE--ecCCE-EEECc
Confidence 00123344444433 356999999888855554443 34333 34566
No 9
>smart00455 RBD Raf-like Ras-binding domain.
Probab=43.62 E-value=89 Score=23.90 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=34.3
Q ss_pred eEEEEEeCCCccHHHHHHHHHHHcC--ccceEEEeeeeeeeEEecCC
Q 022331 102 KSHVMEIANGADVAETLANFARRRQ--RGVCVLSGSGTVTNVTLRQP 146 (299)
Q Consensus 102 r~hVLrL~~GeDIvesI~~Fa~r~~--~ai~VLSgiGaVsnVTLrqp 146 (299)
+...+.+.||.-|.+.|...|++++ -..|.|.-.|.=.-+.+.++
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~~ 56 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQP 56 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCCc
Confidence 5678999999999999999999999 46777777663333444443
No 10
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=35.87 E-value=81 Score=24.53 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=30.5
Q ss_pred eEEEEEeCCCccHHHHHHHHHHHcC--ccceEEEeeeee
Q 022331 102 KSHVMEIANGADVAETLANFARRRQ--RGVCVLSGSGTV 138 (299)
Q Consensus 102 r~hVLrL~~GeDIvesI~~Fa~r~~--~ai~VLSgiGaV 138 (299)
+..++.+.+|+-|.+.|...|++++ ...|.|.-.|.-
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~ 48 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD 48 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence 4568899999999999999999999 366776666654
No 11
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=34.33 E-value=3.2e+02 Score=25.76 Aligned_cols=92 Identities=18% Similarity=0.314 Sum_probs=56.1
Q ss_pred ccceEEEeeeeeeeEEecCCC-C--CCc----eeeeeeeEEEEEeeeecc----CCCC-CCCCCeEEEEEeCCCCcEEce
Q 022331 127 RGVCVLSGSGTVTNVTLRQPS-D--PSA----VMAIHGRFEILSLTGAFL----PGPA-PPGSTGLTIYLAGGQGQVVGG 194 (299)
Q Consensus 127 ~ai~VLSgiGaVsnVTLrqp~-~--~g~----~vtleG~FEILSLsGtis----~~~~-~p~~~HLHISLAg~dGqViGG 194 (299)
...+-+-..|..++|+.|-.. . +|. ++.=+-.||+-.+.||+. |.-- .-...++|+.+-+.| +.+||
T Consensus 106 N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi~v~G~HlHFisdD-r~~GG 184 (232)
T TIGR01252 106 NVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGINVAGYHLHFISED-RTFGG 184 (232)
T ss_pred ccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhccccCCceEEEEEecCC-CCCCc
Confidence 678889999999999999532 1 342 222355688888777775 3310 111345555555443 56899
Q ss_pred ecccceeeccceEEEEeeecCcceeecc
Q 022331 195 SVVGSLVASGPVMVIAATFSNATYERLP 222 (299)
Q Consensus 195 HL~G~LIAAT~V~VI~asF~n~~yeRlP 222 (299)
||....+....+ -++.+.+. .-+||
T Consensus 185 HVld~~~~~~~~--~i~~~~~~-~~~lP 209 (232)
T TIGR01252 185 HVLDYIIDNGTL--EIGQIQEF-NLQLP 209 (232)
T ss_pred ceeEEEeeeeEE--EEeecccE-EEeCC
Confidence 999988864444 44434433 33456
No 12
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=24.85 E-value=87 Score=27.54 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=28.9
Q ss_pred cceEEEeeeeeeeEEecCCCCCCceeeeeeeEEEEEe
Q 022331 128 GVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSL 164 (299)
Q Consensus 128 ai~VLSgiGaVsnVTLrqp~~~g~~vtleG~FEILSL 164 (299)
.+=|||.-|+..|+++. +. ++++++..|.||+.|=
T Consensus 28 ~lKilS~Dgtf~Ni~~~-~~-~~aiIt~~GtY~~~sD 62 (133)
T PF14869_consen 28 VLKILSDDGTFVNITMI-PK-SGAIITGYGTYEQPSD 62 (133)
T ss_pred cEEEEcCCCcEEEEEEe-CC-CCcEEEEeEEEEEcCC
Confidence 46799999999999993 33 3689999999999873
No 13
>PRK09469 glnA glutamine synthetase; Provisional
Probab=24.00 E-value=16 Score=37.39 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=63.8
Q ss_pred EEEEEeCCCccHHHHHHHHHHHcCccceEEEe-eee--eeeEEecCCCCC---Cc----eeeeeeeEEEEEeeeeccCCC
Q 022331 103 SHVMEIANGADVAETLANFARRRQRGVCVLSG-SGT--VTNVTLRQPSDP---SA----VMAIHGRFEILSLTGAFLPGP 172 (299)
Q Consensus 103 ~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSg-iGa--VsnVTLrqp~~~---g~----~vtleG~FEILSLsGtis~~~ 172 (299)
-.+-.++..+|++..|...++..++.+-.+.. .|. -=+++|...+.- .. ...++.-..=--|.-||.+++
T Consensus 181 y~~~~~~~~~~~~~~i~~~l~~~Gi~v~~~h~E~g~~GQ~Ei~l~~~d~L~aaD~~~~~k~~vk~va~~~g~~atFmpKP 260 (469)
T PRK09469 181 FPVPPVDSSQDIRSAMCLVMEEMGLVVEAHHHEVATAGQNEVATRFNTMTKKADEIQIYKYVVHNVAHAFGKTATFMPKP 260 (469)
T ss_pred cCCCcccchHHHHHHHHHHHHHCCCCcEEeeCCCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 45667888999999999999988865433332 342 334444443210 00 011111122223556788875
Q ss_pred --C-CCCCCeEEEEEeCCCCcEE-----------ceecccceeeccceEEEEeeecCcceeeccc
Q 022331 173 --A-PPGSTGLTIYLAGGQGQVV-----------GGSVVGSLVASGPVMVIAATFSNATYERLPL 223 (299)
Q Consensus 173 --~-~p~~~HLHISLAg~dGqVi-----------GGHL~G~LIAAT~V~VI~asF~n~~yeRlP~ 223 (299)
+ .....|+|+||.+....+| +-|.++.|+...+.+..+..=.-.+|+|+--
T Consensus 261 ~~~~~GsG~H~H~Sl~~~g~N~F~~~~~~~ls~~~~~fiaGlL~h~~~l~a~~~PtvNSYkRl~p 325 (469)
T PRK09469 261 MFGDNGSGMHCHMSLSKNGVNLFAGDKYAGLSEQALYYIGGIIKHAKAINALANPTTNSYKRLVP 325 (469)
T ss_pred cCCCCCceeEEEEeecCCCccccCCCCcCCcCHHHHHHHHHHHHHHHHHHhhhcCCCchHhhcCC
Confidence 2 2236899999988433554 1133344444433332222123346888854
No 14
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=21.78 E-value=1.7e+02 Score=27.08 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=33.1
Q ss_pred EEEEeCCC----------ccHHHHHHHHHHHcCccceEEEee-----eeeeeEEecC
Q 022331 104 HVMEIANG----------ADVAETLANFARRRQRGVCVLSGS-----GTVTNVTLRQ 145 (299)
Q Consensus 104 hVLrL~~G----------eDIvesI~~Fa~r~~~ai~VLSgi-----GaVsnVTLrq 145 (299)
.+|+|.+| +||+.....||++++..+.|++.. |.++.|+|..
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i 58 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSL 58 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEE
Confidence 47888888 689999999999999998888764 5566666654
No 15
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=21.11 E-value=1e+02 Score=22.20 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=22.1
Q ss_pred ceEEEEEeCCCccHHHHHHHHHHHcCccc
Q 022331 101 LKSHVMEIANGADVAETLANFARRRQRGV 129 (299)
Q Consensus 101 mr~hVLrL~~GeDIvesI~~Fa~r~~~ai 129 (299)
+..+.|||+. +|.+.|...|+++++++
T Consensus 4 ~~~f~lRlP~--~l~~~lk~~A~~~gRS~ 30 (50)
T PF03869_consen 4 DPQFNLRLPE--ELKEKLKERAEENGRSM 30 (50)
T ss_dssp SEEEEEECEH--HHHHHHHHHHHHTTS-H
T ss_pred CCceeeECCH--HHHHHHHHHHHHhCCCh
Confidence 5567888885 99999999999999764
Done!