Query 022331
Match_columns 299
No_of_seqs 227 out of 511
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 03:45:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hx0_A Putative DNA-binding pr 100.0 3.6E-29 1.2E-33 213.8 16.5 126 93-225 10-137 (154)
2 2dt4_A Hypothetical protein PH 100.0 6.1E-30 2.1E-34 215.2 11.6 120 102-225 10-132 (143)
3 2p6y_A Hypothetical protein VC 100.0 7.3E-29 2.5E-33 209.2 16.6 119 100-225 1-121 (142)
4 2h6l_A Hypothetical protein; N 100.0 1.4E-29 4.6E-34 213.8 10.6 120 102-225 10-132 (146)
5 3htn_A Putative DNA binding pr 100.0 5.3E-29 1.8E-33 211.8 11.9 121 102-225 16-139 (149)
6 3hwu_A Putative DNA-binding pr 99.9 1.7E-26 5.7E-31 195.8 11.7 120 102-225 13-136 (147)
7 2ezd_A High mobility group pro 97.4 7.8E-05 2.7E-09 46.8 2.0 17 72-88 3-19 (26)
8 1xv2_A ALDC, hypothetical prot 68.4 19 0.00064 32.6 8.3 108 111-224 96-215 (237)
9 4i95_A Putative uncharacterize 47.9 16 0.00055 31.1 3.8 35 127-163 36-70 (142)
10 4gzv_A Hypothetical protein; A 29.6 47 0.0016 28.3 3.8 34 128-163 37-70 (142)
11 2k9i_A Plasmid PRN1, complete 28.4 58 0.002 21.5 3.5 23 106-128 12-34 (55)
12 1t3g_A X-linked interleukin-1 24.3 44 0.0015 27.6 2.7 27 108-134 51-77 (159)
No 1
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.96 E-value=3.6e-29 Score=213.84 Aligned_cols=126 Identities=20% Similarity=0.382 Sum_probs=111.2
Q ss_pred eecCCCCCceEEEEEeCCCccHHHHHHHHHHHcCc-cceEEEeeeeeeeEEecCCCCCCceeeeeeeEEEEEeeeeccCC
Q 022331 93 VTRDSPNALKSHVMEIANGADVAETLANFARRRQR-GVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPG 171 (299)
Q Consensus 93 it~~s~~~mr~hVLrL~~GeDIvesI~~Fa~r~~~-ai~VLSgiGaVsnVTLrqp~~~g~~vtleG~FEILSLsGtis~~ 171 (299)
++.++++.+|+|++||++|+||+++|.+||+++++ ++||++++|+|++|+||+++.+. +++++|+|||+||+|||++.
T Consensus 10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~ 88 (154)
T 2hx0_A 10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT 88 (154)
T ss_dssp --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence 45677899999999999999999999999999995 77888999999999999998644 67899999999999999995
Q ss_pred CCCCCCCeEEEEEeCCCCcEEceeccc-ceeeccceEEEEeeecCcceeeccccc
Q 022331 172 PAPPGSTGLTIYLAGGQGQVVGGSVVG-SLVASGPVMVIAATFSNATYERLPLDE 225 (299)
Q Consensus 172 ~~~p~~~HLHISLAg~dGqViGGHL~G-~LIAAT~V~VI~asF~n~~yeRlP~~~ 225 (299)
..||||+|++.||+|+||||+. ++|. ++++|++..|.+..|+|+|+++
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~-~t~Ev~i~~~~~~~~~R~~D~e 137 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVR-TTLELVIGELPALTFSRQPCAI 137 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEE-EEEEEEEEECTTEEEEEEECTT
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEE-EEEEEEEEEccCceEEEecCCC
Confidence 5899999999999999999996 5666 4555777789999999999765
No 2
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.96 E-value=6.1e-30 Score=215.24 Aligned_cols=120 Identities=20% Similarity=0.380 Sum_probs=107.9
Q ss_pred eEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCCC---CceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331 102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDP---SAVMAIHGRFEILSLTGAFLPGPAPPGST 178 (299)
Q Consensus 102 r~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~~---g~~vtleG~FEILSLsGtis~~~~~p~~~ 178 (299)
|+|++||++|+||+++|.+||+++++..|+++++|+|++|+||+++.+ |..++++|+|||+||+|||++.+++| +.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~p-~~ 88 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGEP-FV 88 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTEE-EE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCCc-ee
Confidence 799999999999999999999999988888899999999999987653 56789999999999999999987777 89
Q ss_pred eEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeeccccc
Q 022331 179 GLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDE 225 (299)
Q Consensus 179 HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~~ 225 (299)
||||+|+|.||+|+||||+..+++ |.+ |++.+|.+..|+|+| ++
T Consensus 89 HlHi~l~~~~G~v~GGHl~~g~v~-t~E-v~i~~~~~~~~~R~~-~e 132 (143)
T 2dt4_A 89 HAHVSLGNEEGIVFGGHLVEGEVF-VAE-IFLQELKGEKIERKP-TK 132 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEE-EEE-EEEEEEEESCCEEBC-CT
T ss_pred eEEEEEECCCCCEeCCCCCCCceE-EEE-EEEEEcCCCeEEEeC-CC
Confidence 999999999999999999966655 444 677899999999999 54
No 3
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.96 E-value=7.3e-29 Score=209.21 Aligned_cols=119 Identities=18% Similarity=0.355 Sum_probs=106.1
Q ss_pred CceEEEEEeCCCccHHHHHHHHHHHcCc-cceEEEeeeeeeeEEecCCCCCCceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331 100 ALKSHVMEIANGADVAETLANFARRRQR-GVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILSLTGAFLPGPAPPGST 178 (299)
Q Consensus 100 ~mr~hVLrL~~GeDIvesI~~Fa~r~~~-ai~VLSgiGaVsnVTLrqp~~~g~~vtleG~FEILSLsGtis~~~~~p~~~ 178 (299)
.||+|++||++|+||+++|.+||+++++ ++||++++|+|++++||+++.+ .+++++|+|||+||+|||+++ ..
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-----~~ 74 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-----HC 74 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-----CE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-----CC
Confidence 3899999999999999999999999995 7888899999999999999864 367899999999999999995 59
Q ss_pred eEEEEEeCCCCcEEceeccc-ceeeccceEEEEeeecCcceeeccccc
Q 022331 179 GLTIYLAGGQGQVVGGSVVG-SLVASGPVMVIAATFSNATYERLPLDE 225 (299)
Q Consensus 179 HLHISLAg~dGqViGGHL~G-~LIAAT~V~VI~asF~n~~yeRlP~~~ 225 (299)
||||+++|.||+|+||||++ ++|. ++++|++..|.+..|+|+|+++
T Consensus 75 HlHisl~~~~G~v~GGHl~~g~~V~-~t~Ev~i~~~~~~~~~R~~D~e 121 (142)
T 2p6y_A 75 HLHIAVADAQGRVWGGHLLEGNLIN-TTAELMIHHYPQHHFTREFDPN 121 (142)
T ss_dssp EEEEEEECTTSCEEEEEECTTCEEC-C-EEEEEEECTTEEEEEEEETT
T ss_pred EEEEEEECCCCCEEccccCCCCeEE-EEEEEEEEEccCCeEEEeeCCC
Confidence 99999999999999999996 6775 4555777889999999999765
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.96 E-value=1.4e-29 Score=213.80 Aligned_cols=120 Identities=20% Similarity=0.285 Sum_probs=109.0
Q ss_pred eEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCCC---CceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331 102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDP---SAVMAIHGRFEILSLTGAFLPGPAPPGST 178 (299)
Q Consensus 102 r~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~~---g~~vtleG~FEILSLsGtis~~~~~p~~~ 178 (299)
|+|++||++|+||+++|.+||+++++..|+++++|+|++++||+++.+ |.+++++|+|||+||+|||++.+++| +.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~p-~~ 88 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKP-FC 88 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTEE-EE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCCc-ee
Confidence 689999999999999999999999987777799999999999998754 46789999999999999999987777 89
Q ss_pred eEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeeccccc
Q 022331 179 GLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDE 225 (299)
Q Consensus 179 HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~~ 225 (299)
||||+|+ .||+|+||||++.+| .+++|++.+|.+..|+|+|+++
T Consensus 89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e 132 (146)
T 2h6l_A 89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ 132 (146)
T ss_dssp EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence 9999999 999999999997776 4666888899999999999875
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.96 E-value=5.3e-29 Score=211.78 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=108.4
Q ss_pred eEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCCC---CceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331 102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDP---SAVMAIHGRFEILSLTGAFLPGPAPPGST 178 (299)
Q Consensus 102 r~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~~---g~~vtleG~FEILSLsGtis~~~~~p~~~ 178 (299)
|.|++||++|+||+++|.+||+++++..|+++++|+|++|+|++++.+ |..++++|+|||+||+|||++.+++| +.
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~p-~~ 94 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQV-YL 94 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTEE-EE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCCc-eE
Confidence 889999999999999999999999998888899999999999997642 66889999999999999999988877 89
Q ss_pred eEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeeccccc
Q 022331 179 GLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLDE 225 (299)
Q Consensus 179 HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~~ 225 (299)
|||++|+|.+|+|+||||+.+.|..|.+++| ..+.. .++|.++++
T Consensus 95 HlH~sl~~~~G~v~gGHl~~g~V~~t~Ei~i-~~~~~-~~~R~~D~~ 139 (149)
T 3htn_A 95 HLHITVGRSDYSALAGHLLSAIQNGAGEFVV-EDYSE-RISRTYNPD 139 (149)
T ss_dssp EEEEEEECTTSBEEEEEEEEEEEEEEEEEEE-EECCS-CCEEEEETT
T ss_pred EEEEEEECCCCCEEeEEeCCCEEEEEEEEEE-EEcCC-eeEEeeCCc
Confidence 9999999999999999999887776666444 57777 899998775
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.94 E-value=1.7e-26 Score=195.82 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=105.2
Q ss_pred eEEEEEeCCCccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCCCC---CceeeeeeeEEEEEeeeeccCCCCCCCCC
Q 022331 102 KSHVMEIANGADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPSDP---SAVMAIHGRFEILSLTGAFLPGPAPPGST 178 (299)
Q Consensus 102 r~hVLrL~~GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~~~---g~~vtleG~FEILSLsGtis~~~~~p~~~ 178 (299)
|.+++||++|+||+++|.+||+++++..++++++|++++++|++++.. |...+++ ++||+||+|||++.++.| +.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~p-~~ 90 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGKP-SI 90 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTEE-EE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCCc-eE
Confidence 679999999999999999999999998888899999999999987642 5667888 899999999999988877 89
Q ss_pred eEEEEEeCCCCcEEceecccceeec-cceEEEEeeecCcceeeccccc
Q 022331 179 GLTIYLAGGQGQVVGGSVVGSLVAS-GPVMVIAATFSNATYERLPLDE 225 (299)
Q Consensus 179 HLHISLAg~dGqViGGHL~G~LIAA-T~V~VI~asF~n~~yeRlP~~~ 225 (299)
|||++++|.+|+|+||||....|.+ |.+++|. .+ +..++|.++++
T Consensus 91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~-~~-~~~~~R~~D~~ 136 (147)
T 3hwu_A 91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVT-VY-PQRLDRFVDPE 136 (147)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEE-EE-SSCCBEEEETT
T ss_pred EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEE-Ec-CCeEEEEECCc
Confidence 9999999999999999999777775 6665554 55 45999999765
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=97.36 E-value=7.8e-05 Score=46.84 Aligned_cols=17 Identities=65% Similarity=1.109 Sum_probs=14.5
Q ss_pred cCCCCCCCCCCCCCCCC
Q 022331 72 STRRPRGRPPGSKNKPK 88 (299)
Q Consensus 72 ~~rrpRGRP~GSknKpk 88 (299)
..|||||||.|||||.-
T Consensus 3 tpKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKGA 19 (26)
T ss_dssp SCCCCSSCCTTCCCCSC
T ss_pred CCcCCCCCcCcccccCc
Confidence 35999999999999843
No 8
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=68.41 E-value=19 Score=32.65 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=61.6
Q ss_pred CccHHHHHHHHHHHcCccceEEEeeeeeeeEEecCCC-C--CCc----eeeeeeeEEEEEeeeecc----CCCC-CCCCC
Q 022331 111 GADVAETLANFARRRQRGVCVLSGSGTVTNVTLRQPS-D--PSA----VMAIHGRFEILSLTGAFL----PGPA-PPGST 178 (299)
Q Consensus 111 GeDIvesI~~Fa~r~~~ai~VLSgiGaVsnVTLrqp~-~--~g~----~vtleG~FEILSLsGtis----~~~~-~p~~~ 178 (299)
-+++-+.|.+.. ...-.+-+-.-|..++|+.|-.. . +|. ++.-+-.|++--..|||. |.-- .....
T Consensus 96 ~~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~ 173 (237)
T 1xv2_A 96 DDVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSA 173 (237)
T ss_dssp HHHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCS
T ss_pred HHHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCc
Confidence 344444444443 34678889999999999999532 2 242 223344466666666664 4321 11134
Q ss_pred eEEEEEeCCCCcEEceecccceeeccceEEEEeeecCcceeecccc
Q 022331 179 GLTIYLAGGQGQVVGGSVVGSLVASGPVMVIAATFSNATYERLPLD 224 (299)
Q Consensus 179 HLHISLAg~dGqViGGHL~G~LIAAT~V~VI~asF~n~~yeRlP~~ 224 (299)
++|+.+-+.|-+ +||||....+....+. ++.+.+. .-++|.+
T Consensus 174 G~HlHFisdDr~-~GGHVldf~~~~~~~~--~~~~~~~-~l~lP~~ 215 (237)
T 1xv2_A 174 GFHIHFADDERA-YGGHVLDFEVDDVVVE--IQNFETF-QQHFPVN 215 (237)
T ss_dssp EEEEEEEETTSS-CEEEEEEEEEEEEEEE--EEECSEE-EEECCTT
T ss_pred eeEEEEEcCCCC-CCcceEEEEecceEEE--EeecccE-EEECCCC
Confidence 555555555444 9999998877555443 3434333 3367763
No 9
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=47.89 E-value=16 Score=31.14 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=30.1
Q ss_pred ccceEEEeeeeeeeEEecCCCCCCceeeeeeeEEEEE
Q 022331 127 RGVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILS 163 (299)
Q Consensus 127 ~ai~VLSgiGaVsnVTLrqp~~~g~~vtleG~FEILS 163 (299)
..+=|||.=|+..|++++. + ..++++..|.|||.|
T Consensus 36 n~lKIlSdDgtF~Ni~m~~-~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 36 NTFKVLSDDGRIVNFTIRP-G-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEE
T ss_pred ccEEEEcCCCcEEEEEEec-C-CCcEEEEeEEEEecC
Confidence 3567899999999999993 3 478999999999997
No 10
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=29.61 E-value=47 Score=28.28 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=28.3
Q ss_pred cceEEEeeeeeeeEEecCCCCCCceeeeeeeEEEEE
Q 022331 128 GVCVLSGSGTVTNVTLRQPSDPSAVMAIHGRFEILS 163 (299)
Q Consensus 128 ai~VLSgiGaVsnVTLrqp~~~g~~vtleG~FEILS 163 (299)
..=|||.=|+..|+++..- ..++++..|.|||+|
T Consensus 37 ~~KIlS~DgtF~N~~m~~~--~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIPG--ADAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCTT--SCCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeCC--CCcEEEEeEEEEecC
Confidence 4668999999999998542 267899999999997
No 11
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=28.36 E-value=58 Score=21.47 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=17.8
Q ss_pred EEeCCCccHHHHHHHHHHHcCcc
Q 022331 106 MEIANGADVAETLANFARRRQRG 128 (299)
Q Consensus 106 LrL~~GeDIvesI~~Fa~r~~~a 128 (299)
|.|.=-+|+.+.|..+|++.+++
T Consensus 12 i~vrl~~el~~~l~~~a~~~g~s 34 (55)
T 2k9i_A 12 LGVYIPQEWHDRLMEIAKEKNLT 34 (55)
T ss_dssp EEEEECHHHHHHHHHHHHHHTCC
T ss_pred EEEEcCHHHHHHHHHHHHHhCCC
Confidence 34444589999999999998854
No 12
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=24.27 E-value=44 Score=27.59 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=24.4
Q ss_pred eCCCccHHHHHHHHHHHcCccceEEEe
Q 022331 108 IANGADVAETLANFARRRQRGVCVLSG 134 (299)
Q Consensus 108 L~~GeDIvesI~~Fa~r~~~ai~VLSg 134 (299)
+.+|++|.+.|.+..++-.+.++|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999999888899999985
Done!