BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022332
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PVH|A Chain A, Structural And Functional Analysis Of Arabidopsis Thaliana
Thylakoid Lumen Protein Attlp18.3
pdb|3PW9|A Chain A, Structural And Functional Analysis Of Arabidopsis Thaliana
Thylakoid Lumen Protein Attlp18.3
Length = 153
Score = 269 bits (688), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 126/152 (82%), Positives = 144/152 (94%)
Query: 98 ASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKAD 157
ASEF++L +GPPK++Y+VDDAGV+S+VTKSDLK+LLSDLE RK +NFITVRKLTSKAD
Sbjct: 2 ASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKAD 61
Query: 158 AFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLP 217
AFEYADQVLEKWYPS+EEGNNKGIVVL+TSQKEGA+TGGPAF++AVGE +LDAT+SENLP
Sbjct: 62 AFEYADQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLP 121
Query: 218 VLATDEKYNEAVYSTAKRLVAAIDGLPDTGGP 249
VLATDEKYNEAVYS+AKRLVAAIDG PD GGP
Sbjct: 122 VLATDEKYNEAVYSSAKRLVAAIDGQPDPGGP 153
>pdb|3PTJ|A Chain A, Structural And Functional Analysis Of Arabidopsis Thaliana
Thylakoid Lumen Protein Attlp18.3
Length = 153
Score = 267 bits (682), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 126/152 (82%), Positives = 143/152 (94%)
Query: 98 ASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKAD 157
ASEF++L +GPPK++Y+VDDAGV+S+VTKSDLK+LLSDLE RK +NFITVRKLTSKAD
Sbjct: 2 ASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKXRLNFITVRKLTSKAD 61
Query: 158 AFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLP 217
AFEYADQVLEKWYPS EEGNNKGIVVL+TSQKEGA+TGGPAF++AVGE +LDAT+SENLP
Sbjct: 62 AFEYADQVLEKWYPSXEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLP 121
Query: 218 VLATDEKYNEAVYSTAKRLVAAIDGLPDTGGP 249
VLATDEKYNEAVYS+AKRLVAAIDG PD GGP
Sbjct: 122 VLATDEKYNEAVYSSAKRLVAAIDGQPDPGGP 153
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 93 NGNALASEFDVLTEGPPKDSYLVDDAGVIS 122
+G + DV TE PP+D LVD VIS
Sbjct: 271 SGQCAGAALDVFTEEPPRDRALVDHENVIS 300
>pdb|2FC3|A Chain A, Crystal Structure Of The Extremely Thermostable Aeropyrum
Pernix L7ae Multifunctional Protein
Length = 124
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 159 FEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPV 218
FE + + EK Y +V+ G + T++ AV G A + + E+V I +LP+
Sbjct: 6 FEVPEDLAEKAYEAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPL 65
Query: 219 LATDEKYNEAVYSTAKRLVAAIDGL 243
L DEK VY +K+ + G+
Sbjct: 66 LC-DEKKIPYVYVPSKKRLGEAAGI 89
>pdb|3ID5|C Chain C, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|G Chain G, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|C Chain C, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|D Chain D, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|L Chain L, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 130
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 160 EYADQVLEKWYPSVEEGN-NKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPV 218
+ AD+VLE + E G KG T++ AV G A + + E+V I +LP+
Sbjct: 17 DLADKVLEAVRKAKESGKIKKG-----TNETTKAVERGQAKLVIIAEDVQPEEIVAHLPL 71
Query: 219 LATDEKYNEAVYSTAKRLVAAIDGL 243
L DEK VY ++K+ + GL
Sbjct: 72 L-CDEKKIPYVYVSSKKALGEACGL 95
>pdb|2O1E|A Chain A, Crystal Structure Of The Metal-Dependent Lipoprotein Ycdh
From Bacillus Subtilis, Northeast Structural Genomics
Target Sr583
pdb|2O1E|B Chain B, Crystal Structure Of The Metal-Dependent Lipoprotein Ycdh
From Bacillus Subtilis, Northeast Structural Genomics
Target Sr583
Length = 312
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 156 ADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQK 189
AD F Y + E W PS E+ +G V V + K
Sbjct: 71 ADLFVYNSEYXETWVPSAEKSXGQGHAVFVNASK 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,447,122
Number of Sequences: 62578
Number of extensions: 328864
Number of successful extensions: 765
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 18
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)