BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022332
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZVL6|U603_ARATH UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana
GN=At1g54780 PE=1 SV=1
Length = 285
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/301 (70%), Positives = 245/301 (81%), Gaps = 18/301 (5%)
Query: 1 METILSSPSISPFLNPKPSSSKTLFSPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPS 60
MET+LS ++SP LNPKP S LH + SL +K T S KH L+
Sbjct: 1 METLLSPRALSPPLNPKPLS--------LHQTKPTSHSLSLSKPTTFSGPKH----LSTR 48
Query: 61 LQVP--RSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDA 118
P R+W A+QGLAALALSL L+FSP+ G ALASEF++L +GPPK++Y+VDDA
Sbjct: 49 FTKPESRNWLIDAKQGLAALALSLTLTFSPV----GTALASEFNILNDGPPKETYVVDDA 104
Query: 119 GVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNN 178
GV+S+VTKSDLK+LLSDLE RK +NFITVRKLTSKADAFEYADQVLEKWYPS+EEGNN
Sbjct: 105 GVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNN 164
Query: 179 KGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVA 238
KGIVVL+TSQKEGA+TGGPAF++AVGE +LDAT+SENLPVLATDEKYNEAVYS+AKRLVA
Sbjct: 165 KGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVA 224
Query: 239 AIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSR 298
AIDG PD GGP ++KRESNFKTKEET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVSR
Sbjct: 225 AIDGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSR 284
Query: 299 K 299
K
Sbjct: 285 K 285
>sp|Q6ATY4|U603_ORYSJ UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os05g0401100 PE=3 SV=1
Length = 299
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/263 (71%), Positives = 219/263 (83%), Gaps = 11/263 (4%)
Query: 45 ITCSLKKHNP--------QLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNA 96
++C+L++ P + SW Q GLAA ALSLA+S + A
Sbjct: 40 VSCALRRQQPPPQAVAAWRGDGGRGGGVGSWATFLQHGLAAAALSLAIS---MAPAPAPA 96
Query: 97 LASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKA 156
+ASEFDVL GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN INFITVRKLTSKA
Sbjct: 97 VASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKA 156
Query: 157 DAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENL 216
DAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+T+SENL
Sbjct: 157 DAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENL 216
Query: 217 PVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLV 276
PVLATDEKYNEA+Y+TAKRL AAIDGLPD GGP F +NKRESNFKTKEETEEKRGQF+LV
Sbjct: 217 PVLATDEKYNEAIYTTAKRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLV 276
Query: 277 VGGLLVIAFVVPMAQYYAYVSRK 299
VGGLLVIAFVVPMAQYYAY+S+K
Sbjct: 277 VGGLLVIAFVVPMAQYYAYISKK 299
>sp|A2Y4G9|U603_ORYSI UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp.
indica GN=OsI_19898 PE=3 SV=2
Length = 299
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/263 (71%), Positives = 219/263 (83%), Gaps = 11/263 (4%)
Query: 45 ITCSLKKHNP--------QLLNPSLQVPRSWFAHAQQGLAALALSLALSFSPLLYTNGNA 96
++C+L++ P + SW Q GLAA ALSLA+S + A
Sbjct: 40 VSCALRRQQPPPQAVAAWRGDGGRGGGVGSWATFLQHGLAAAALSLAIS---MAPAPAPA 96
Query: 97 LASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKA 156
+ASEFDVL GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN INFITVRKLTSKA
Sbjct: 97 VASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKA 156
Query: 157 DAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENL 216
DAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+T+SENL
Sbjct: 157 DAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENL 216
Query: 217 PVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLV 276
PVLATDEKYNEA+Y+TAKRL AAIDGLPD GGP F +NKRESNFKTKEETEEKRGQF+LV
Sbjct: 217 PVLATDEKYNEAIYTTAKRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLV 276
Query: 277 VGGLLVIAFVVPMAQYYAYVSRK 299
VGGLLVIAFVVPMAQYYAY+S+K
Sbjct: 277 VGGLLVIAFVVPMAQYYAYISKK 299
>sp|O81900|DYT1_ARATH Transcription factor DYSFUNCTIONAL TAPETUM 1 OS=Arabidopsis
thaliana GN=DYT1 PE=2 SV=1
Length = 207
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 23/139 (16%)
Query: 26 SPSLHAQQQRQSSLFCTKNITCSLKKHNPQLLNPSLQVPRSWFAHAQQGLAALALSLALS 85
SP+L A+++R+ L C +L+ H P + N + A + A++
Sbjct: 31 SPNLEAERRRREKLHCR---LMALRSHVPIVTNMT---------------KASIVEDAIT 72
Query: 86 FSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHIN 145
+ L N L F + E PP+ D + +V SDL + + L +N +
Sbjct: 73 YIGELQNNVKNLLETFHEMEEAPPEIDEEQTDPMIKPEVETSDLNEEMKKLGIEENVQLC 132
Query: 146 FITVRK-----LTSKADAF 159
I RK +T K D
Sbjct: 133 KIGERKFWLKIITEKRDGI 151
>sp|Q550U9|PLBLA_DICDI Phospholipase B-like protein A OS=Dictyostelium discoideum GN=plbA
PE=1 SV=1
Length = 574
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 94 GNALASEFDVLTEGPPKDSYLVDDA--GVISKVTKSDL 129
GN ++S FD++T P + YL DA G+ SKV +D+
Sbjct: 469 GNQISSRFDLVTADDPNNQYLDPDAFGGIDSKVVSADM 506
>sp|Q65U83|APT_MANSM Adenine phosphoribosyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=apt PE=3 SV=2
Length = 180
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 150 RKLTSKADAFEYADQVLEKWYPSVEEGNNKGIV--VLVTSQKEGAVTGGPAFVKAVGEEV 207
R+ S++ EY + LE SV+ G+N I+ +L T G V +K +G +V
Sbjct: 90 RETISQSYQLEYGEDTLEMHVDSVKAGDNVLIIDDLLATG---GTVDATIKLIKRLGGDV 146
Query: 208 LDATISENLPVLATDEK 224
A NLP L +E+
Sbjct: 147 KHAAFVINLPELGGEER 163
>sp|Q98PK9|TRXB_MYCPU Thioredoxin reductase OS=Mycoplasma pulmonis (strain UAB CTIP)
GN=trxB PE=3 SV=1
Length = 307
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 89 LLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINF-I 147
++ GN+ E L+ K +V D+ I++ K L++DL+SRKN + F
Sbjct: 152 IIIGGGNSAVEEGTFLSSIASKVYVIVRDSDFIAE------KALVNDLKSRKNIEVLFNA 205
Query: 148 TVRKLTSKADAFEYA 162
+V++L K DA EYA
Sbjct: 206 SVKELHGK-DALEYA 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,745,905
Number of Sequences: 539616
Number of extensions: 4726090
Number of successful extensions: 10243
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 10224
Number of HSP's gapped (non-prelim): 36
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)