Query 022332
Match_columns 299
No_of_seqs 266 out of 1063
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1512 Beta-propeller domains 100.0 8.1E-32 1.8E-36 250.0 20.4 139 107-251 29-172 (271)
2 PF04536 TPM: TLP18.3, Psb32 a 99.9 1.9E-22 4.2E-27 163.8 13.1 118 120-240 1-119 (119)
3 COG3762 Predicted membrane pro 96.6 0.0027 5.8E-08 56.8 4.8 89 156-246 108-197 (213)
4 PHA02650 hypothetical protein; 64.7 23 0.0005 27.5 5.6 19 225-243 16-34 (81)
5 PF11446 DUF2897: Protein of u 63.0 6.6 0.00014 28.3 2.3 26 273-298 3-28 (55)
6 PTZ00382 Variant-specific surf 57.5 4.7 0.0001 32.2 0.8 25 275-299 71-95 (96)
7 PF08693 SKG6: Transmembrane a 57.2 11 0.00023 25.6 2.3 20 280-299 21-40 (40)
8 PHA02844 putative transmembran 56.4 41 0.0009 25.8 5.6 19 225-243 16-34 (75)
9 PHA02819 hypothetical protein; 53.0 50 0.0011 25.0 5.6 17 226-242 17-33 (71)
10 PHA02975 hypothetical protein; 53.0 53 0.0012 24.8 5.7 19 226-244 17-35 (69)
11 PHA03054 IMV membrane protein; 49.8 62 0.0013 24.6 5.6 18 226-243 17-34 (72)
12 PF13131 DUF3951: Protein of u 46.1 24 0.00052 25.1 2.8 24 276-299 8-31 (53)
13 PF12575 DUF3753: Protein of u 45.3 70 0.0015 24.4 5.3 17 228-244 19-35 (72)
14 COG0687 PotD Spermidine/putres 44.7 1E+02 0.0023 29.6 8.0 33 113-152 35-67 (363)
15 PTZ00370 STEVOR; Provisional 38.4 23 0.00049 33.9 2.2 28 272-299 256-283 (296)
16 TIGR01478 STEVOR variant surfa 37.7 24 0.00051 33.8 2.2 28 272-299 260-287 (295)
17 PF10916 DUF2712: Protein of u 37.4 37 0.0008 29.3 3.1 35 65-104 2-36 (146)
18 PF03462 PCRF: PCRF domain; I 36.6 98 0.0021 25.1 5.5 44 124-167 17-70 (115)
19 COG0541 Ffh Signal recognition 33.0 1.4E+02 0.0031 30.3 6.9 58 112-172 185-242 (451)
20 PF01299 Lamp: Lysosome-associ 32.1 48 0.001 31.5 3.4 39 260-298 258-298 (306)
21 PHA02692 hypothetical protein; 31.9 1.6E+02 0.0034 22.4 5.4 19 225-243 16-34 (70)
22 PRK09458 pspB phage shock prot 31.9 55 0.0012 25.2 3.0 25 275-299 6-30 (75)
23 PF12170 DNA_pol3_tau_5: DNA p 31.8 1.8E+02 0.0039 24.7 6.5 52 116-169 61-112 (142)
24 PF12669 P12: Virus attachment 31.8 21 0.00045 25.9 0.7 21 277-297 3-23 (58)
25 PF03302 VSP: Giardia variant- 31.5 29 0.00063 34.4 1.9 25 275-299 372-396 (397)
26 TIGR03042 PS_II_psbQ_bact phot 31.5 1.3E+02 0.0028 25.9 5.5 19 121-139 30-48 (142)
27 TIGR03227 PhnS 2-aminoethylpho 31.3 1.3E+02 0.0029 28.8 6.4 37 113-150 39-75 (367)
28 PF01364 Peptidase_C25: Peptid 30.6 33 0.00072 33.2 2.1 39 130-169 13-60 (378)
29 PF13124 DUF3963: Protein of u 28.7 69 0.0015 21.3 2.6 23 64-86 16-38 (40)
30 PRK14864 putative biofilm stre 28.1 3.3E+02 0.0071 22.1 7.1 22 127-148 63-84 (104)
31 COG0300 DltE Short-chain dehyd 28.0 62 0.0013 30.5 3.3 51 121-172 35-86 (265)
32 PF10996 Beta-Casp: Beta-Casp 26.5 1.6E+02 0.0034 23.3 5.1 30 136-170 75-104 (126)
33 PF14283 DUF4366: Domain of un 26.4 41 0.00089 30.8 1.8 12 178-189 83-94 (218)
34 COG0107 HisF Imidazoleglycerol 25.8 5.7E+02 0.012 24.1 9.1 89 132-235 112-225 (256)
35 PF12301 CD99L2: CD99 antigen 24.0 51 0.0011 29.1 1.8 25 275-299 118-142 (169)
36 PF06667 PspB: Phage shock pro 23.3 62 0.0014 24.8 2.0 23 276-298 7-29 (75)
37 cd01427 HAD_like Haloacid deha 23.3 1.3E+02 0.0028 22.8 3.9 51 114-172 3-64 (139)
38 cd07021 Clp_protease_NfeD_like 22.7 2E+02 0.0044 25.2 5.4 42 113-156 2-43 (178)
39 PRK10856 cytoskeletal protein 22.0 1.3E+02 0.0029 29.1 4.5 24 128-165 14-37 (331)
40 COG4698 Uncharacterized protei 22.0 1.6E+02 0.0034 26.6 4.4 78 64-151 7-88 (197)
41 PRK01271 4-oxalocrotonate taut 21.5 3E+02 0.0064 20.9 5.4 45 119-167 11-58 (76)
42 PF09509 Hypoth_Ymh: Protein o 21.2 1.3E+02 0.0028 25.0 3.6 32 205-241 7-38 (125)
43 PF11382 DUF3186: Protein of u 20.7 2.3E+02 0.005 27.1 5.7 42 123-165 45-106 (308)
44 TIGR02976 phageshock_pspB phag 20.1 84 0.0018 24.0 2.1 23 276-298 7-29 (75)
45 PF10691 DUF2497: Protein of u 20.0 2.3E+02 0.0051 21.5 4.5 43 118-167 2-44 (73)
No 1
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=100.00 E-value=8.1e-32 Score=250.02 Aligned_cols=139 Identities=23% Similarity=0.392 Sum_probs=124.9
Q ss_pred CCCCCCcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCccCCcceEEEEEE
Q 022332 107 GPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVT 186 (299)
Q Consensus 107 ~~~~~~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~~~nnGVLlLIa 186 (299)
.|...++|+|.+++||.+|++.|+++|++|+++++.||+||||+++ +|++||+||.++|++|++|+ |+.||||||||+
T Consensus 29 ~p~~~~~V~D~t~~Ls~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt-~g~~IE~ya~rlfd~W~lG~-k~~~dGvLLlVa 106 (271)
T COG1512 29 APTLSQRVTDLTGTLSAAERGALEQQLADLEQKTGAQIAVVTVPST-GGETIEQYATRLFDKWKLGD-KAQDDGVLLLVA 106 (271)
T ss_pred CCcccceeeeccccCChhhHHHHHHHHHHHHhccCCeEEEEEecCC-CCCCHHHHHHHHHHhcCCCc-cccCCCEEEEEE
Confidence 3445679999999999999999999999999999999999999999 79999999999999999998 999999999999
Q ss_pred ecC-cceEeCCcchhhhhH----HHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHccCCCCCCCcc
Q 022332 187 SQK-EGAVTGGPAFVKAVG----EEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKF 251 (299)
Q Consensus 187 ~~d-eg~I~~G~~l~d~l~----~~Ii~~~~~e~~p~fkr~gdY~~ai~~~vd~I~~~l~g~~dpg~P~~ 251 (299)
|+| ..+|.+|.+++..++ .+||+++| .|+|+ +|||++|+..++++|.+++.++++|.|+..
T Consensus 107 ~~dr~~rIevGyGLEg~ltD~~a~~iIr~~i---~P~fr-~gny~~gi~~~id~l~~~l~g~~~~~~~~~ 172 (271)
T COG1512 107 MNDRRVRIEVGYGLEGVLTDAQAGRIIRETI---APAFR-DGNYAGGLEAGIDRLVALLAGEPLPSPARA 172 (271)
T ss_pred cCCCeEEEEEecCcccccChHHHHHHHHhhh---Ccccc-cCcHHHHHHHHHHHHHHHHcCCCCCCcccc
Confidence 998 778888877665555 46776666 59997 999999999999999999999999887754
No 2
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=99.89 E-value=1.9e-22 Score=163.76 Aligned_cols=118 Identities=23% Similarity=0.437 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCccCCcceEEEEEEecC-cceEeCCcc
Q 022332 120 VISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQK-EGAVTGGPA 198 (299)
Q Consensus 120 vLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~~~nnGVLlLIa~~d-eg~I~~G~~ 198 (299)
+||++++++|++.+++++++|+.+|+|||++++ +|.++++||.++|++|++|. ++++|||||+|++++ +..|.+|++
T Consensus 1 iLs~~~~~~l~~~l~~~~~~t~~~i~Vvtv~~~-~~~~~~~~A~~~~~~~~~g~-~~~~~gvlilv~~~~r~~~i~~g~~ 78 (119)
T PF04536_consen 1 ILSQEERERLNQALAKLEKKTGVQIVVVTVPSL-PGQDIEDYAQQLFERWGLGD-GECNNGVLILVSKDDRKVRIETGGG 78 (119)
T ss_dssp -S-HHHHHHHHHHHHHHHHHC--EEEEEEESB--TTS-HHHHHHHHHHHHSTTC-CCTSSEEEEEEETTTTEEEEEE-CT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCEEEEEEEcCC-CCCCHHHHHHHHHHHhCCCC-ccccCcEEEEEEcCCCEEEEEECCc
Confidence 699999999999999999999999999999999 78999999999999999998 889999999999987 778888988
Q ss_pred hhhhhHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHH
Q 022332 199 FVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAI 240 (299)
Q Consensus 199 l~d~l~~~Ii~~~~~e~~p~fkr~gdY~~ai~~~vd~I~~~l 240 (299)
+.+.+++..++++++++.|+|+ +|||++|+..+++.+.++|
T Consensus 79 ~~~~l~~~~~~~i~~~~~~~~~-~~~~~~g~~~~v~~i~~~L 119 (119)
T PF04536_consen 79 LEERLTDSECESIIDEMVPYFK-DGDYAEGIEAAVDAIAEVL 119 (119)
T ss_dssp CCCCH-HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhC
Confidence 8777777777776666679997 8999999999999998875
No 3
>COG3762 Predicted membrane protein [Function unknown]
Probab=96.65 E-value=0.0027 Score=56.75 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHhCCCCccCCcceEEEEEEecC-cceEeCCcchhhhhHHHHHHHHHhcccccccccCCHHHHHHHHHH
Q 022332 156 ADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQK-EGAVTGGPAFVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAK 234 (299)
Q Consensus 156 ~die~yA~~l~~~WgiG~e~~~nnGVLlLIa~~d-eg~I~~G~~l~d~l~~~Ii~~~~~e~~p~fkr~gdY~~ai~~~vd 234 (299)
.....-|.+.|..-|+-. ....+||||++++-+ ...+-.+.++.....+..++.+.+...-.|+ +|.|.+|+..+++
T Consensus 108 ~~~~~~Al~qFl~~gvh~-T~~rtGVLIfvs~aeh~veViAD~GI~a~V~~~~W~~ic~~ltag~~-~~~~adgfveAi~ 185 (213)
T COG3762 108 QRAHARALQQFLELGVHN-TEARTGVLIFVSLAEHRVEVIADQGIHAYVGQAEWNAICDTLTAGFR-QGAAADGFVEAIG 185 (213)
T ss_pred HHHHHHHHHHHHHhcccc-ccccceeEEeeHHHHHHHHHHhcccHHhhccHHHHHHHHHHHHHHHh-ccchhhHHHHHHH
Confidence 345556888899999886 788999999999987 4445555666677777777776665568896 8999999999999
Q ss_pred HHHHHHccCCCC
Q 022332 235 RLVAAIDGLPDT 246 (299)
Q Consensus 235 ~I~~~l~g~~dp 246 (299)
++.++|...-.|
T Consensus 186 qig~vLA~hfP~ 197 (213)
T COG3762 186 QIGKVLAAHFPP 197 (213)
T ss_pred HHHHHHHHhCCC
Confidence 999999876433
No 4
>PHA02650 hypothetical protein; Provisional
Probab=64.68 E-value=23 Score=27.46 Aligned_cols=19 Identities=0% Similarity=-0.003 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHccC
Q 022332 225 YNEAVYSTAKRLVAAIDGL 243 (299)
Q Consensus 225 Y~~ai~~~vd~I~~~l~g~ 243 (299)
-++-+.+.++-+..++.++
T Consensus 16 ~DdDFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 16 TDDDFNNFIDVVKSVLSDE 34 (81)
T ss_pred cHHHHHHHHHHHHHHHcCC
Confidence 3444677888889999876
No 5
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=63.01 E-value=6.6 Score=28.32 Aligned_cols=26 Identities=8% Similarity=0.171 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhheeecC
Q 022332 273 FSLVVGGLLVIAFVVPMAQYYAYVSR 298 (299)
Q Consensus 273 ~~~~v~ilLvia~vipm~~~~~y~~~ 298 (299)
+..|+++++|+++|+.-+...=|+.|
T Consensus 3 ~~~wlIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 3 WNPWLIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred chhhHHHHHHHHHHHhHHHHHHHhcc
Confidence 34699999999999998887777665
No 6
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=57.50 E-value=4.7 Score=32.19 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhheeecCC
Q 022332 275 LVVGGLLVIAFVVPMAQYYAYVSRK 299 (299)
Q Consensus 275 ~~v~ilLvia~vipm~~~~~y~~~~ 299 (299)
+.|.++++++.++.++.||++.+||
T Consensus 71 i~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 71 ISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred EEeehhhHHHHHHHHHhheeEEeec
Confidence 3455567777777777787776665
No 7
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=57.25 E-value=11 Score=25.57 Aligned_cols=20 Identities=25% Similarity=0.369 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhheeecCC
Q 022332 280 LLVIAFVVPMAQYYAYVSRK 299 (299)
Q Consensus 280 lLvia~vipm~~~~~y~~~~ 299 (299)
..++++++..++|++|.++|
T Consensus 21 V~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred hHHHHHHHHHHhheEEeccC
Confidence 44555666667788888876
No 8
>PHA02844 putative transmembrane protein; Provisional
Probab=56.35 E-value=41 Score=25.75 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHccC
Q 022332 225 YNEAVYSTAKRLVAAIDGL 243 (299)
Q Consensus 225 Y~~ai~~~vd~I~~~l~g~ 243 (299)
-++-+.+.++-+..++.++
T Consensus 16 ~DdDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 16 ENEDFNNFIDVVKSVLSDD 34 (75)
T ss_pred chHHHHHHHHHHHHHHcCC
Confidence 3444677888889999877
No 9
>PHA02819 hypothetical protein; Provisional
Probab=53.02 E-value=50 Score=25.05 Aligned_cols=17 Identities=0% Similarity=0.134 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHcc
Q 022332 226 NEAVYSTAKRLVAAIDG 242 (299)
Q Consensus 226 ~~ai~~~vd~I~~~l~g 242 (299)
++-+.+.++-+..++.+
T Consensus 17 DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 17 DDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 34457778888888886
No 10
>PHA02975 hypothetical protein; Provisional
Probab=52.98 E-value=53 Score=24.77 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHccCC
Q 022332 226 NEAVYSTAKRLVAAIDGLP 244 (299)
Q Consensus 226 ~~ai~~~vd~I~~~l~g~~ 244 (299)
++-+.+.++-+..++.++.
T Consensus 17 DdDF~nFI~vVksVLtdk~ 35 (69)
T PHA02975 17 DSDFEDFIDTIMHVLTGKK 35 (69)
T ss_pred hHHHHHHHHHHHHHHcCCC
Confidence 4446778888999998763
No 11
>PHA03054 IMV membrane protein; Provisional
Probab=49.79 E-value=62 Score=24.60 Aligned_cols=18 Identities=0% Similarity=0.028 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHccC
Q 022332 226 NEAVYSTAKRLVAAIDGL 243 (299)
Q Consensus 226 ~~ai~~~vd~I~~~l~g~ 243 (299)
++-+.+.++-+..++.++
T Consensus 17 d~Df~~Fi~vV~sVl~dk 34 (72)
T PHA03054 17 EDDLTDFIEIVKSVLSDE 34 (72)
T ss_pred hHHHHHHHHHHHHHHcCC
Confidence 556778888999999876
No 12
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=46.13 E-value=24 Score=25.13 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhheeecCC
Q 022332 276 VVGGLLVIAFVVPMAQYYAYVSRK 299 (299)
Q Consensus 276 ~v~ilLvia~vipm~~~~~y~~~~ 299 (299)
.+.+.+++.++|.+++|=+|+.|+
T Consensus 8 ~~~~~~~I~~lIgfity~mfV~K~ 31 (53)
T PF13131_consen 8 IILFTIFIFFLIGFITYKMFVKKA 31 (53)
T ss_pred HHHHHHHHHHHHHHHHHHhheecC
Confidence 345566778888899999999875
No 13
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=45.30 E-value=70 Score=24.40 Aligned_cols=17 Identities=0% Similarity=-0.064 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHccCC
Q 022332 228 AVYSTAKRLVAAIDGLP 244 (299)
Q Consensus 228 ai~~~vd~I~~~l~g~~ 244 (299)
=+...++-+.+++.+++
T Consensus 19 Df~~Fi~vVksVltdk~ 35 (72)
T PF12575_consen 19 DFNNFINVVKSVLTDKK 35 (72)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 46778888999998663
No 14
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=44.73 E-value=1e+02 Score=29.57 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=25.7
Q ss_pred cEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEecc
Q 022332 113 YLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKL 152 (299)
Q Consensus 113 ~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl 152 (299)
+|..-.|-..++ .++.|+++||++|.+.+-++-
T Consensus 35 ~v~~w~gy~~~~-------~~~~F~k~tGi~V~~~~~~sn 67 (363)
T COG0687 35 NVYNWGGYIDPA-------LLKPFEKETGIKVVYDTFDSN 67 (363)
T ss_pred EEEcccccCCHH-------HHHHHHHHHCCEEEEEecCCc
Confidence 566677776665 889999999999888776653
No 15
>PTZ00370 STEVOR; Provisional
Probab=38.42 E-value=23 Score=33.91 Aligned_cols=28 Identities=25% Similarity=0.416 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeecCC
Q 022332 272 QFSLVVGGLLVIAFVVPMAQYYAYVSRK 299 (299)
Q Consensus 272 ~~~~~v~ilLvia~vipm~~~~~y~~~~ 299 (299)
++++..++||+++.|+-++--|.|+++|
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556677888888888888889998865
No 16
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=37.75 E-value=24 Score=33.76 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhheeecCC
Q 022332 272 QFSLVVGGLLVIAFVVPMAQYYAYVSRK 299 (299)
Q Consensus 272 ~~~~~v~ilLvia~vipm~~~~~y~~~~ 299 (299)
++++..++||+++.|+-++--|.|+++|
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456677888888888888889998865
No 17
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=37.42 E-value=37 Score=29.26 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=23.6
Q ss_pred cccHHHHHHHHHHHHHHHHHhhhhhccccccccccccccC
Q 022332 65 RSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVL 104 (299)
Q Consensus 65 ~~~~~~~~~~l~al~l~l~l~~~p~~~~~~~A~as~~dvP 104 (299)
+++.++.++.++|+++++++ ++++ ..+.|+..|+|
T Consensus 2 ~kf~~~~~~~~~a~~~~~~~-~a~~----~~~~Asdn~i~ 36 (146)
T PF10916_consen 2 KKFAKKNVRLILAAAIGISV-FAFV----SHAAASDNNIP 36 (146)
T ss_pred chHHHHHHHHHHHHHHHHHH-Hhhh----hhhhhcccCCc
Confidence 46788888988888888885 4544 24555555554
No 18
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=36.63 E-value=98 Score=25.15 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhh----------cCCeEEEEEEeccCCCCCHHHHHHHHHH
Q 022332 124 VTKSDLKQLLSDLESR----------KNFHINFITVRKLTSKADAFEYADQVLE 167 (299)
Q Consensus 124 ~e~~~L~~~L~~le~~----------tg~qI~VVTV~sl~~G~die~yA~~l~~ 167 (299)
++.+.+.+.+++++.+ ....-+++.|+.=.+|.....||.++++
T Consensus 17 ~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~ 70 (115)
T PF03462_consen 17 EEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFR 70 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHH
Confidence 4566667777776655 4556667777775599999999998876
No 19
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.97 E-value=1.4e+02 Score=30.31 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=50.4
Q ss_pred CcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCC
Q 022332 112 SYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPS 172 (299)
Q Consensus 112 ~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG 172 (299)
--++|.||=|.- .++|-+++.++.+....+=.+.+++.. -|+++..-|..+-++-+++
T Consensus 185 vvIvDTAGRl~i--de~Lm~El~~Ik~~~~P~E~llVvDam-~GQdA~~~A~aF~e~l~it 242 (451)
T COG0541 185 VVIVDTAGRLHI--DEELMDELKEIKEVINPDETLLVVDAM-IGQDAVNTAKAFNEALGIT 242 (451)
T ss_pred EEEEeCCCcccc--cHHHHHHHHHHHhhcCCCeEEEEEecc-cchHHHHHHHHHhhhcCCc
Confidence 369999999975 566889999999998888888999999 7899999999998887776
No 20
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=32.13 E-value=48 Score=31.46 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=25.7
Q ss_pred ccchhhhhhh--ccchhHHHHHHHHHHHHHHHHhhheeecC
Q 022332 260 FKTKEETEEK--RGQFSLVVGGLLVIAFVVPMAQYYAYVSR 298 (299)
Q Consensus 260 ~~~~~~t~~~--~~~~~~~v~ilLvia~vipm~~~~~y~~~ 298 (299)
|-..++...+ ....+++|+++|+..+||-++.|++.++|
T Consensus 258 Fg~a~~C~~D~~~~~vPIaVG~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 258 FGTAEECSSDDTSDLVPIAVGAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred CCChhcCCcCCccchHHHHHHHHHHHHHHHHHHhheeEecc
Confidence 6555554432 23455777777777777778888887775
No 21
>PHA02692 hypothetical protein; Provisional
Probab=31.95 E-value=1.6e+02 Score=22.39 Aligned_cols=19 Identities=5% Similarity=-0.062 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHccC
Q 022332 225 YNEAVYSTAKRLVAAIDGL 243 (299)
Q Consensus 225 Y~~ai~~~vd~I~~~l~g~ 243 (299)
-++-+.+.++-+..++.++
T Consensus 16 ~DdDF~~Fi~vVksVLtDk 34 (70)
T PHA02692 16 SDEDFEEFLNIVRTVMTEK 34 (70)
T ss_pred CHHHHHHHHHHHHHHHcCC
Confidence 3445678888899999876
No 22
>PRK09458 pspB phage shock protein B; Provisional
Probab=31.91 E-value=55 Score=25.16 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhhheeecCC
Q 022332 275 LVVGGLLVIAFVVPMAQYYAYVSRK 299 (299)
Q Consensus 275 ~~v~ilLvia~vipm~~~~~y~~~~ 299 (299)
+.+.+++++.||-|.-.|+-|++|+
T Consensus 6 l~~PliiF~ifVaPiWL~LHY~sk~ 30 (75)
T PRK09458 6 LAIPLTIFVLFVAPIWLWLHYRSKR 30 (75)
T ss_pred HHHhHHHHHHHHHHHHHHHhhcccc
Confidence 3455566777889999999999864
No 23
>PF12170 DNA_pol3_tau_5: DNA polymerase III tau subunit V interacting with alpha; InterPro: IPR021029 This domain family is found in bacteria, and is approximately 140 amino acids in length. The family is found in association with PF00004 from PFAM. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. The extreme C-terminal region of this domain 5 is the part which interacts with the alpha subunit of the DNA polymerase III holoenzyme [, ]. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 2AYA_A.
Probab=31.79 E-value=1.8e+02 Score=24.72 Aligned_cols=52 Identities=10% Similarity=0.189 Sum_probs=31.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHh
Q 022332 116 DDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKW 169 (299)
Q Consensus 116 D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~W 169 (299)
+...+.++..+++|.+.|.++-.+. +++.|..-++- .+.|+-++-.++++..
T Consensus 61 ~q~HL~~~~a~~~L~~ALs~~~g~~-i~L~I~~~~~~-~~~TP~e~r~~i~~er 112 (142)
T PF12170_consen 61 SQKHLNNDSAQEQLQQALSEYLGEP-IKLSIEEGDNP-ARETPLEIRQRIYQER 112 (142)
T ss_dssp GGTTT--HHHHHHHHHHHHHHHSS---EEEEEE---T-TS--HHHHHHHHHHHH
T ss_pred hhHhhCCHHHHHHHHHHHHHHhCCC-EEEEEEECCCC-CCCCHHHHHHHHHHHH
Confidence 5778999999999999988874433 55554333333 5689999999888653
No 24
>PF12669 P12: Virus attachment protein p12 family
Probab=31.75 E-value=21 Score=25.88 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhheeec
Q 022332 277 VGGLLVIAFVVPMAQYYAYVS 297 (299)
Q Consensus 277 v~ilLvia~vipm~~~~~y~~ 297 (299)
+++++|+++++-.+.+.+|..
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~ 23 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKD 23 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443233444443
No 25
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=31.55 E-value=29 Score=34.41 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhheeecCC
Q 022332 275 LVVGGLLVIAFVVPMAQYYAYVSRK 299 (299)
Q Consensus 275 ~~v~ilLvia~vipm~~~~~y~~~~ 299 (299)
+-|.+++||+-+|.|+-||+.-++|
T Consensus 372 IsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 372 ISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred eeehhHHHHHHHHHHHhhheeeccc
Confidence 5577788999999999999988876
No 26
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=31.45 E-value=1.3e+02 Score=25.86 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 022332 121 ISKVTKSDLKQLLSDLESR 139 (299)
Q Consensus 121 LS~~e~~~L~~~L~~le~~ 139 (299)
.|+++.++|+...+.++.-
T Consensus 30 ysp~~l~~i~~~~~~i~~~ 48 (142)
T TIGR03042 30 YSPAQLAQIQRQAEGIEAA 48 (142)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5789999999988887764
No 27
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=31.33 E-value=1.3e+02 Score=28.83 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=27.7
Q ss_pred cEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEe
Q 022332 113 YLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVR 150 (299)
Q Consensus 113 ~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~ 150 (299)
.|+...|..+ .++..++..+++|++++|++|.++...
T Consensus 39 ~Vy~~~g~~~-~~~~~~~~i~~~Fe~~~Gi~V~~~~~~ 75 (367)
T TIGR03227 39 LVYSADGLED-GDNSLYQDQFDAFEKAEGIKVNIVEAG 75 (367)
T ss_pred EEEecCcccc-cchHHHHHHHHHHHHHHCCEEEEEeCC
Confidence 5777777764 334567788899999999998887643
No 28
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=30.62 E-value=33 Score=33.23 Aligned_cols=39 Identities=13% Similarity=0.376 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCeEEEEEEeccCCC---------CCHHHHHHHHHHHh
Q 022332 130 KQLLSDLESRKNFHINFITVRKLTSK---------ADAFEYADQVLEKW 169 (299)
Q Consensus 130 ~~~L~~le~~tg~qI~VVTV~sl~~G---------~die~yA~~l~~~W 169 (299)
-+.+.++.++.|.++.||++.++ +. ..|.+|-+.++++|
T Consensus 13 ~~~la~~r~~~G~~~~vv~v~~I-~~~f~~G~~~~~aIR~fi~~~y~~~ 60 (378)
T PF01364_consen 13 AQRLAEWRRSQGYKVLVVTVEDI-YNEFSYGIPDPTAIRNFIRYAYDNW 60 (378)
T ss_dssp -HHHHHHHHHTT-EEEEEEHHHH--SS-------HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCcEEEEEHHHh-hhhhhhccccHHHHHHHHHHHHHhc
Confidence 35567888888999999999997 43 36788999999988
No 29
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=28.66 E-value=69 Score=21.27 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=15.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHhh
Q 022332 64 PRSWFAHAQQGLAALALSLALSF 86 (299)
Q Consensus 64 ~~~~~~~~~~~l~al~l~l~l~~ 86 (299)
-++|.+.+..+++.+++.+..+|
T Consensus 16 iqkwirnit~cfal~vv~lvslw 38 (40)
T PF13124_consen 16 IQKWIRNITFCFALLVVVLVSLW 38 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888777776666665444
No 30
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=28.12 E-value=3.3e+02 Score=22.12 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhcCCeEEEEE
Q 022332 127 SDLKQLLSDLESRKNFHINFIT 148 (299)
Q Consensus 127 ~~L~~~L~~le~~tg~qI~VVT 148 (299)
.+++++|.+-.++.|..-..++
T Consensus 63 ~d~~~~La~KAda~GA~yYrIi 84 (104)
T PRK14864 63 DDAEREIQAKANAAGADYYVIV 84 (104)
T ss_pred HHHHHHHHHHHHHcCCCEEEEE
Confidence 3344444444444444443333
No 31
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=28.01 E-value=62 Score=30.53 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHH-hCCC
Q 022332 121 ISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEK-WYPS 172 (299)
Q Consensus 121 LS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~-WgiG 172 (299)
|-.-.++.|++.-+++++++++++.|+.+|=. .-.+++...+++.++ |.++
T Consensus 35 LvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs-~~~~~~~l~~~l~~~~~~Id 86 (265)
T COG0300 35 LVARREDKLEALAKELEDKTGVEVEVIPADLS-DPEALERLEDELKERGGPID 86 (265)
T ss_pred EEeCcHHHHHHHHHHHHHhhCceEEEEECcCC-ChhHHHHHHHHHHhcCCccc
Confidence 55666888999999999999999998888765 446777666676665 4443
No 32
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=26.47 E-value=1.6e+02 Score=23.34 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=22.9
Q ss_pred HHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhC
Q 022332 136 LESRKNFHINFITVRKLTSKADAFEYADQVLEKWY 170 (299)
Q Consensus 136 le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~Wg 170 (299)
+....+..|+|.+=..++.| ++..++++|.
T Consensus 75 l~~~~~p~Vvias~gml~~G-----~s~~~l~~~~ 104 (126)
T PF10996_consen 75 LNALSGPKVVIASSGMLEGG-----RSRHYLKRLA 104 (126)
T ss_dssp HHHSCSSEEEEESSTTSSSS-----HHHHHHHHHT
T ss_pred cccCCCCeEEEeCCCCCCCC-----HHHHHHHHHc
Confidence 55455788888888888666 7788899986
No 33
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=26.36 E-value=41 Score=30.83 Aligned_cols=12 Identities=0% Similarity=0.268 Sum_probs=6.4
Q ss_pred cceEEEEEEecC
Q 022332 178 NKGIVVLVTSQK 189 (299)
Q Consensus 178 nnGVLlLIa~~d 189 (299)
.|-.-|+|.+++
T Consensus 83 gn~FyliIDr~~ 94 (218)
T PF14283_consen 83 GNTFYLIIDRDE 94 (218)
T ss_pred CCEEEEEEecCC
Confidence 445555555554
No 34
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=25.79 E-value=5.7e+02 Score=24.08 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=54.5
Q ss_pred HHHHHHhhcCCeEEEEEEeccC--CC-----------------CCHHHHHHHHHHHhCCCCccCCcceEEEEEEecCcce
Q 022332 132 LLSDLESRKNFHINFITVRKLT--SK-----------------ADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGA 192 (299)
Q Consensus 132 ~L~~le~~tg~qI~VVTV~sl~--~G-----------------~die~yA~~l~~~WgiG~e~~~nnGVLlLIa~~deg~ 192 (299)
.+.+..++.|.|-.||-++.-- +| .++-+||.++-+ -|-|. +||-+|+.+|.
T Consensus 112 lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~-~GAGE--------IlLtsmD~DGt 182 (256)
T COG0107 112 LITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEE-LGAGE--------ILLTSMDRDGT 182 (256)
T ss_pred HHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHH-cCCce--------EEEeeeccccc
Confidence 6778888999999998887642 11 478889988744 34443 88888987553
Q ss_pred EeCCcchhhhhHHHHHHHHHhccccccccc-----CCHHHHHHHH-HHH
Q 022332 193 VTGGPAFVKAVGEEVLDATISENLPVLATD-----EKYNEAVYST-AKR 235 (299)
Q Consensus 193 I~~G~~l~d~l~~~Ii~~~~~e~~p~fkr~-----gdY~~ai~~~-vd~ 235 (299)
=. |.++ .+.+.+.+..- +|..... +++.+++..+ +|+
T Consensus 183 k~-GyDl--~l~~~v~~~v~---iPvIASGGaG~~ehf~eaf~~~~adA 225 (256)
T COG0107 183 KA-GYDL--ELTRAVREAVN---IPVIASGGAGKPEHFVEAFTEGKADA 225 (256)
T ss_pred cc-CcCH--HHHHHHHHhCC---CCEEecCCCCcHHHHHHHHHhcCccH
Confidence 22 2221 24455444432 5766422 2566666655 443
No 35
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=24.02 E-value=51 Score=29.11 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhheeecCC
Q 022332 275 LVVGGLLVIAFVVPMAQYYAYVSRK 299 (299)
Q Consensus 275 ~~v~ilLvia~vipm~~~~~y~~~~ 299 (299)
.-|+-.+++++|-...-||.|.+||
T Consensus 118 aGIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 118 AGIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566788889999999999999987
No 36
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.31 E-value=62 Score=24.78 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhheeecC
Q 022332 276 VVGGLLVIAFVVPMAQYYAYVSR 298 (299)
Q Consensus 276 ~v~ilLvia~vipm~~~~~y~~~ 298 (299)
++.+++++.||.|...++-|.+|
T Consensus 7 ~~plivf~ifVap~WL~lHY~sk 29 (75)
T PF06667_consen 7 FVPLIVFMIFVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445556678888778878775
No 37
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=23.28 E-value=1.3e+02 Score=22.83 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=32.8
Q ss_pred EecCCCCCCHHHH-----------HHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCC
Q 022332 114 LVDDAGVISKVTK-----------SDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPS 172 (299)
Q Consensus 114 V~D~AgvLS~~e~-----------~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG 172 (299)
|.|..|+|...+. ..+.+.++++.+. |.++.|+|-.. .++....+++.++.
T Consensus 3 vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-g~~i~ivS~~~-------~~~~~~~~~~~~~~ 64 (139)
T cd01427 3 LFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEK-GIKLALATNKS-------RREVLELLEELGLD 64 (139)
T ss_pred EEccCCceEccCccccccccCCcCcCHHHHHHHHHHC-CCeEEEEeCch-------HHHHHHHHHHcCCc
Confidence 5666666655542 4466777777765 78888887433 45666777776653
No 38
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=22.73 E-value=2e+02 Score=25.16 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=35.0
Q ss_pred cEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCC
Q 022332 113 YLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKA 156 (299)
Q Consensus 113 ~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~ 156 (299)
+|++-.|.+++.....|++.|++.+++. .+..|+.+++- +|.
T Consensus 2 ~vi~i~g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~insp-GG~ 43 (178)
T cd07021 2 YVIPIEGEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTP-GGR 43 (178)
T ss_pred EEEEEeeEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECc-CCC
Confidence 5677778899999999999999988876 88899999886 563
No 39
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=22.04 E-value=1.3e+02 Score=29.11 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHH
Q 022332 128 DLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQV 165 (299)
Q Consensus 128 ~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l 165 (299)
.+-+.|++.+++. |.+.++.|+++
T Consensus 14 ~~G~~Lr~aRe~~--------------GlSq~~vA~~l 37 (331)
T PRK10856 14 TTGERLRQAREQL--------------GLTQQAVAERL 37 (331)
T ss_pred HHHHHHHHHHHHc--------------CCCHHHHHHHH
Confidence 3667777776664 45666666554
No 40
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.98 E-value=1.6e+02 Score=26.56 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=39.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhhhhhccccccccccccccCCCCCCCCCcEecCCCCCCHHHHHHHHHHHHHHH----hh
Q 022332 64 PRSWFAHAQQGLAALALSLALSFSPLLYTNGNALASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLE----SR 139 (299)
Q Consensus 64 ~~~~~~~~~~~l~al~l~l~l~~~p~~~~~~~A~as~~dvP~~~~~~~~~V~D~AgvLS~~e~~~L~~~L~~le----~~ 139 (299)
..+|+|+++-+|+|+...+++.++ ++ ... +-+-|..-...+. + ++.+.=-..++++||+.++.+- .+
T Consensus 7 ~~n~WKw~f~iLLAln~l~~~~i~-~~-----vls-p~ee~t~~~~a~~-~-~~~~fqitttr~~LN~li~syl~~~~te 77 (197)
T COG4698 7 TLNYWKWLFFILLALNTLLAVLIA-LF-----VLS-PREEPTHLEDASE-K-SEKSFQITTTRSQLNELINSYLEDYQTE 77 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhh-ee-----ecc-CCCCCchhhccCc-c-cceeEEEEccHHHHHHHHHHHHHHhhhc
Confidence 445888888888888877775333 11 110 1100100000111 2 4444444566778877766543 33
Q ss_pred cCCeEEEEEEec
Q 022332 140 KNFHINFITVRK 151 (299)
Q Consensus 140 tg~qI~VVTV~s 151 (299)
...-.|+..++
T Consensus 78 -e~~YKv~it~~ 88 (197)
T COG4698 78 -EMPYKVYITDE 88 (197)
T ss_pred -cCCeEEEEecC
Confidence 34555555555
No 41
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=21.54 E-value=3e+02 Score=20.92 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhh-cC--CeEEEEEEeccCCCCCHHHHHHHHHH
Q 022332 119 GVISKVTKSDLKQLLSDLESR-KN--FHINFITVRKLTSKADAFEYADQVLE 167 (299)
Q Consensus 119 gvLS~~e~~~L~~~L~~le~~-tg--~qI~VVTV~sl~~G~die~yA~~l~~ 167 (299)
|-+|.+++++|-+.+.+.-.+ .| -+...|++..+ +.++|+.++++
T Consensus 11 g~~s~EqK~~La~~iT~a~~~~lg~~~e~v~V~I~ev----~~~~W~~~vy~ 58 (76)
T PRK01271 11 RELDEEQKAALAADITDVIIRHLNSKDSSISIALQQI----QPESWQAEVWD 58 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEc----CHHHhhHHhcC
Confidence 458999999999999886553 44 45666666665 67899999875
No 42
>PF09509 Hypoth_Ymh: Protein of unknown function (Hypoth_ymh); InterPro: IPR012654 This entry consists of a relatively rare prokaryotic protein family (about 8 occurrences per 200 genomes). Genes for members of this family appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. Their function is unknown.
Probab=21.17 E-value=1.3e+02 Score=24.98 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=24.3
Q ss_pred HHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHc
Q 022332 205 EEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAID 241 (299)
Q Consensus 205 ~~Ii~~~~~e~~p~fkr~gdY~~ai~~~vd~I~~~l~ 241 (299)
.+|++..- +.|. +|+|+.|+.+++..+...+.
T Consensus 7 ~~i~~~~~----~~~~-~~~y~~AV~eA~K~l~~rvR 38 (125)
T PF09509_consen 7 PEIWKYCR----EELL-DGHYFHAVFEAVKSLEDRVR 38 (125)
T ss_pred HHHHHHHH----HHHh-cCCHHHHHHHHHHHHHHHHH
Confidence 45555443 5665 79999999999999988775
No 43
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=20.68 E-value=2.3e+02 Score=27.10 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhh--------------------cCCeEEEEEEeccCCCCCHHHHHHHH
Q 022332 123 KVTKSDLKQLLSDLESR--------------------KNFHINFITVRKLTSKADAFEYADQV 165 (299)
Q Consensus 123 ~~e~~~L~~~L~~le~~--------------------tg~qI~VVTV~sl~~G~die~yA~~l 165 (299)
+++.++|++++++++++ +|..|.||+.++- ...+.++..+.+
T Consensus 45 r~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~lv~g~L~g~~V~vV~~p~a-~~~~~~~v~~~L 106 (308)
T PF11382_consen 45 REENDELRAELDALQAQLNAADQFIAAVAPRLVAGRLTGRSVAVVTLPGA-DDEDVDAVRELL 106 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCEEEEEEcCCC-ChHHHHHHHHHH
Confidence 35566666666666533 3788888888877 445665555444
No 44
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.08 E-value=84 Score=24.04 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhheeecC
Q 022332 276 VVGGLLVIAFVVPMAQYYAYVSR 298 (299)
Q Consensus 276 ~v~ilLvia~vipm~~~~~y~~~ 298 (299)
.+.+++++.||.|...|.-|.+|
T Consensus 7 ~~Pliif~ifVap~wl~lHY~~k 29 (75)
T TIGR02976 7 AIPLIIFVIFVAPLWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445556677787778778775
No 45
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=20.03 E-value=2.3e+02 Score=21.48 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHH
Q 022332 118 AGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLE 167 (299)
Q Consensus 118 AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~ 167 (299)
.+++|+.+.+...+.+.++...-. ....- ++.++|+.+.++++
T Consensus 2 ~~Lis~~~~~~~~~~f~~L~~~~~------~~~~~-~~~TlE~lvremLR 44 (73)
T PF10691_consen 2 ESLISPETAEAVASAFAKLASAIR------QISPS-SGRTLEDLVREMLR 44 (73)
T ss_pred CcccChhHHHHHHHHHHHHHHHHH------hcccc-ccccHHHHHHHHHH
Confidence 578999999999999999988653 12222 56899999998865
Done!