Query 022332
Match_columns 299
No_of_seqs 266 out of 1063
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 03:46:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pvh_A UPF0603 protein AT1G547 100.0 2.5E-37 8.7E-42 264.2 11.8 150 98-249 2-153 (153)
2 2kw7_A Conserved domain protei 100.0 4.8E-28 1.6E-32 207.0 15.0 142 100-244 6-150 (157)
3 2kpt_A Putative secreted prote 99.9 1E-27 3.4E-32 204.0 13.5 125 111-248 14-140 (148)
4 2l69_A Rossmann 2X3 fold prote 50.9 48 0.0016 25.7 6.6 51 127-190 36-87 (134)
5 3t12_B Gliding protein MGLB; G 31.8 51 0.0017 26.7 4.3 31 120-150 4-34 (136)
6 3fau_A NEDD4-binding protein 2 27.6 1.7E+02 0.0057 20.9 6.6 69 115-185 3-80 (82)
7 1g6u_A Domain swapped dimer; d 26.7 57 0.0019 21.2 3.0 19 121-139 17-35 (48)
8 2ks1_B Epidermal growth factor 25.9 38 0.0013 22.3 2.1 22 275-297 16-37 (44)
9 1pdo_A Mannose permease; phosp 25.0 1.2E+02 0.0043 23.7 5.6 43 141-187 25-67 (135)
10 2k1k_A Ephrin type-A receptor 24.3 44 0.0015 21.2 2.1 18 280-298 21-38 (38)
11 2a7k_A CARB; crotonase, antibi 23.2 1.3E+02 0.0044 26.0 5.8 44 118-161 21-67 (250)
12 1uiy_A Enoyl-COA hydratase; ly 22.9 1.6E+02 0.0056 25.4 6.4 45 118-162 20-66 (253)
13 2l2t_A Receptor tyrosine-prote 21.7 53 0.0018 21.7 2.1 20 276-296 16-35 (44)
No 1
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A
Probab=100.00 E-value=2.5e-37 Score=264.24 Aligned_cols=150 Identities=82% Similarity=1.268 Sum_probs=141.6
Q ss_pred ccccccCCCCCCCCCcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCcc-C
Q 022332 98 ASEFDVLTEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEE-G 176 (299)
Q Consensus 98 as~~dvP~~~~~~~~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~-~ 176 (299)
|+++++|++++++..||+|+||+||++++++|+++|++|+++|+.||+||||+++++|+++++||.++|++|++|. + +
T Consensus 2 a~~~~~p~~~~~~~~~V~D~A~vLs~~~~~~l~~~l~~le~~t~~qi~Vvtv~~~~~g~~i~~~A~~l~~~wgiG~-~~~ 80 (153)
T 3pvh_A 2 ASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSI-EEG 80 (153)
T ss_dssp HHHHHHHHTCCCTTTSEEETTCCSCHHHHHHHHHHHHHHHHHHCCEEEEEEESCCSSSCCHHHHHHHHHHHHSCSH-HHH
T ss_pred CccccCCCCCCCCCcEEEeCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEEEcCCCCCCCHHHHHHHHHHHhCCCC-cCC
Confidence 4478899887777889999999999999999999999999999999999999999438999999999999999997 7 8
Q ss_pred CcceEEEEEEecCcceEeCCcchhhhhHHHHHHHHHhccccccccc-CCHHHHHHHHHHHHHHHHccCCCCCCC
Q 022332 177 NNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATISENLPVLATD-EKYNEAVYSTAKRLVAAIDGLPDTGGP 249 (299)
Q Consensus 177 ~nnGVLlLIa~~deg~I~~G~~l~d~l~~~Ii~~~~~e~~p~fkr~-gdY~~ai~~~vd~I~~~l~g~~dpg~P 249 (299)
+||||||||++++|++|++|.++.|+++++|++++.++++|+|+ + |||++|+.+++++|...+.|+++||||
T Consensus 81 ~~nGvLllva~~de~~i~~g~gi~d~~~~~ii~~~~~~i~p~fk-~~gdy~~gi~~~~~~i~~~l~g~~~p~pp 153 (153)
T 3pvh_A 81 NNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLA-TDEKYNEAVYSSAKRLVAAIDGQPDPGGP 153 (153)
T ss_dssp TTEEEEEEETTTTEEEEEECHHHHHHHCHHHHHHHHHTHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred CCCEEEEEEEeCCeEEEeCCccHHHHhhHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 99999999999999999999999999999999999777789997 7 999999999999999999999999998
No 2
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=99.95 E-value=4.8e-28 Score=207.02 Aligned_cols=142 Identities=16% Similarity=0.272 Sum_probs=124.6
Q ss_pred ccccCCCCCC-CCCcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCccCCc
Q 022332 100 EFDVLTEGPP-KDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNN 178 (299)
Q Consensus 100 ~~dvP~~~~~-~~~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~~~n 178 (299)
+.++|+++.+ ...+|+|+|++||++++++|+++|++++++|+.||+|||++++ +|.++++||.++|++||+|. +++|
T Consensus 6 ~~~~p~~~~~~~~~~V~D~a~~Ls~~~~~~L~~~l~~~e~~t~~qi~Vv~v~~l-~g~~~~~~A~~~f~~wgig~-~~~~ 83 (157)
T 2kw7_A 6 PEDVPNVQLADSTRLVTDEAGLLSNAQEEVMNGRLRAIRSSHAVEFAVVTLPSI-GDAPLEDFTLKLARQWGVGN-EKNN 83 (157)
T ss_dssp GGGSCCGGGTCTTTCEEECSSCSCHHHHHHHHHHHHHHHHHTCCEEEEEEESBC-TTCCHHHHHHHHHHHHSTTT-TSCT
T ss_pred HhhCCCCCCCCCCceEEcccccCCHHHHHHHHHHHHHHHHhhCCeEEEEEEcCC-CCCCHHHHHHHHHHHhCCCC-CCCC
Confidence 5678865442 2569999999999999999999999999999999999999999 78999999999999999998 8999
Q ss_pred ceEEEEEEecC-cceEeCCcchhhhhHHHHHHHHHh-cccccccccCCHHHHHHHHHHHHHHHHccCC
Q 022332 179 KGIVVLVTSQK-EGAVTGGPAFVKAVGEEVLDATIS-ENLPVLATDEKYNEAVYSTAKRLVAAIDGLP 244 (299)
Q Consensus 179 nGVLlLIa~~d-eg~I~~G~~l~d~l~~~Ii~~~~~-e~~p~fkr~gdY~~ai~~~vd~I~~~l~g~~ 244 (299)
|||||+|++++ +.+|.+|.++...+++..++++++ .+.|+|+ +|||++|+..+++++..++.++.
T Consensus 84 nGvLl~va~~dr~v~I~~g~gl~~~l~d~~~~~I~~~~~~~~fr-~g~y~~gi~~~i~~i~~~l~~~~ 150 (157)
T 2kw7_A 84 NGLLLVLVLDQRRVRFETGYGLEGYLPDGLLSRIIHDRMIPHFR-SGNYAEGLSEGVLAVQQVLDGSL 150 (157)
T ss_dssp TEEEEEEETTTTEEEEEECSTTTTTCCHHHHHHHHHHTHHHHHH-HTCHHHHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEEeCCCEEEEEECccHHhhCCHHHHHHHHHHHhHHHHh-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 678999988877777666666552 2369997 89999999999999999998764
No 3
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=99.95 E-value=1e-27 Score=204.04 Aligned_cols=125 Identities=11% Similarity=0.171 Sum_probs=111.2
Q ss_pred CCcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCccCCcceEEEEEEecCc
Q 022332 111 DSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKE 190 (299)
Q Consensus 111 ~~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~~~nnGVLlLIa~~de 190 (299)
..+|+|+||+||++++++|+++|++|++++|.||+||||+++ +|+++++||.++|++|| | |||+||+|+++++
T Consensus 14 ~~~V~D~A~vLs~~~~~~L~~~l~~l~~~tg~qi~VvtV~sl-~g~~ie~yA~~l~~~wg-G-----~ngvLLlVa~~dR 86 (148)
T 2kpt_A 14 QDNVTDYTGQISSSDITNIQAAIDDVKASEQKVIFVVFLSSF-DGVDPETWTQQALQANG-G-----GNVLIYALAPEER 86 (148)
T ss_dssp CCSEEESSSCSCHHHHHHHHHHHHHHHHHSCCEEEEEECSCC-TTTCHHHHHHHHHHHHT-C-----SSEEEEEEEGGGT
T ss_pred CceeeeCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEEECCC-CCCCHHHHHHHHHHHhC-C-----CCcEEEEEEeCCC
Confidence 469999999999999999999999999999999999999999 89999999999999999 7 5899999999874
Q ss_pred ceEeCCcc--hhhhhHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHccCCCCCC
Q 022332 191 GAVTGGPA--FVKAVGEEVLDATISENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGG 248 (299)
Q Consensus 191 g~I~~G~~--l~d~l~~~Ii~~~~~e~~p~fkr~gdY~~ai~~~vd~I~~~l~g~~dpg~ 248 (299)
- |.+|.+ +.|+.+++|+++. .|+|+ +|||++|+..++++|..++.|+++|+|
T Consensus 87 k-i~vg~Gl~ltDa~~~~I~~~~----~p~fk-~gdy~~g~~~~~~~i~~~l~ge~~~~~ 140 (148)
T 2kpt_A 87 Q-YGIQGGTQWTDAELDAANNAA----FQALS-QEDWAGSALALAESVGSSSSSSSGSSS 140 (148)
T ss_dssp E-EEEEECTTSCHHHHHHHHHHH----HHHHH-TTCHHHHHHHHHHHHHTTCCSCCCSCC
T ss_pred E-EEeccCcccCHHHHHHHHHhc----cchhc-cCCHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 3 554544 5566666777666 39997 899999999999999999999988875
No 4
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=50.88 E-value=48 Score=25.72 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEeccCCCCCHHHHHHHHHHHhC-CCCccCCcceEEEEEEecCc
Q 022332 127 SDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQVLEKWY-PSVEEGNNKGIVVLVTSQKE 190 (299)
Q Consensus 127 ~~L~~~L~~le~~tg~qI~VVTV~sl~~G~die~yA~~l~~~Wg-iG~e~~~nnGVLlLIa~~de 190 (299)
++|.+.++++-++.+..|+||++++- +||.+..+.-. +|. .+|+.|-.+|+
T Consensus 36 qelkdsieelvkkynativvvvvddk-------ewaekairfvkslga------qvliiiydqdq 87 (134)
T 2l69_A 36 QELKDSIEELVKKYNATIVVVVVDDK-------EWAEKAIRFVKSLGA------QVLIIIYDQDQ 87 (134)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECSSH-------HHHHHHHHHHHHHCC------CCEEEEECSCH
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEccH-------HHHHHHHHHHHhcCC------eEEEEEEeCch
Confidence 56888899999999999999988774 57766555421 332 35666666653
No 5
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=31.82 E-value=51 Score=26.67 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCeEEEEEEe
Q 022332 120 VISKVTKSDLKQLLSDLESRKNFHINFITVR 150 (299)
Q Consensus 120 vLS~~e~~~L~~~L~~le~~tg~qI~VVTV~ 150 (299)
+|++++.+++++.|++|-..+|.+.++++=+
T Consensus 4 v~~~e~~~~i~~iL~~L~~~~gv~~~~lvd~ 34 (136)
T 3t12_B 4 VLYGAPYAAAVEVLEETLRETGARYALLIDR 34 (136)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCCSEEEEEET
T ss_pred eecHHHHHHHHHHHHHHHhhcCCeEEEEEcC
Confidence 6899999999999999999999998877543
No 6
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=27.64 E-value=1.7e+02 Score=20.86 Aligned_cols=69 Identities=14% Similarity=0.045 Sum_probs=42.7
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHHh----hcC-CeEEEEEEe---ccCCC-CCHHHHHHHHHHHhCCCCccCCcceEEEEE
Q 022332 115 VDDAGVISKVTKSDLKQLLSDLES----RKN-FHINFITVR---KLTSK-ADAFEYADQVLEKWYPSVEEGNNKGIVVLV 185 (299)
Q Consensus 115 ~D~AgvLS~~e~~~L~~~L~~le~----~tg-~qI~VVTV~---sl~~G-~die~yA~~l~~~WgiG~e~~~nnGVLlLI 185 (299)
.|.=|+--++....|++.|++... ..+ ..+.|+|=+ |- +| .-+...-.+++++.++-. .+.|.|++.+.
T Consensus 3 lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS~-~g~~~Lk~~V~~~L~~~~~~~-~e~n~G~l~V~ 80 (82)
T 3fau_A 3 LDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQ-GGVARIKPAVIKYLISHSFRF-SEIKPGCLKVM 80 (82)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC----------CHHHHHHHHHHHTTCCE-EEEETTEEEEE
T ss_pred EECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCC-CCcchHHHHHHHHHHhCCCce-eeCCCEEEEEE
Confidence 455666666777778888876554 133 356666532 22 23 247888888898888765 45578887653
No 7
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.74 E-value=57 Score=21.20 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 022332 121 ISKVTKSDLKQLLSDLESR 139 (299)
Q Consensus 121 LS~~e~~~L~~~L~~le~~ 139 (299)
+|+++...|+..++.+|++
T Consensus 17 fspeelaaleselqalekk 35 (48)
T 1g6u_A 17 FSPEELAALESELQALEKK 35 (48)
T ss_dssp CSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 6889999999999988875
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=25.85 E-value=38 Score=22.31 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhheeec
Q 022332 275 LVVGGLLVIAFVVPMAQYYAYVS 297 (299)
Q Consensus 275 ~~v~ilLvia~vipm~~~~~y~~ 297 (299)
.+++.++++++++ .+.||+..+
T Consensus 16 gVVgGv~~~~ii~-~~~~~~~RR 37 (44)
T 2ks1_B 16 GMVGALLLLLVVA-LGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHT
T ss_pred ehhHHHHHHHHHH-HHHHHHhhh
Confidence 3555555555444 333443333
No 9
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=25.03 E-value=1.2e+02 Score=23.65 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=26.3
Q ss_pred CCeEEEEEEeccCCCCCHHHHHHHHHHHhCCCCccCCcceEEEEEEe
Q 022332 141 NFHINFITVRKLTSKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTS 187 (299)
Q Consensus 141 g~qI~VVTV~sl~~G~die~yA~~l~~~WgiG~e~~~nnGVLlLIa~ 187 (299)
|.+-.|.+++=. .+.+++++..++-+... . -..++|||+|.++
T Consensus 25 G~~~~v~ai~~~-~~~~~~~~~~~i~~~i~--~-~~~~~gvliLtDl 67 (135)
T 1pdo_A 25 GEQENVGWIDFV-PGENAETLIEKYNAQLA--K-LDTTKGVLFLVDT 67 (135)
T ss_dssp CCCSSEEEECBC-TTCCHHHHHHHHHHHHT--T-SCCTTCEEEEESS
T ss_pred CCcCCEEEEEee-CCCCHHHHHHHHHHHHH--h-cCCCCCEEEEEEC
Confidence 333344455533 56788888888776653 1 2334688888877
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.25 E-value=44 Score=21.25 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhheeecC
Q 022332 280 LLVIAFVVPMAQYYAYVSR 298 (299)
Q Consensus 280 lLvia~vipm~~~~~y~~~ 298 (299)
+..++++. .+.||+|.+|
T Consensus 21 v~gv~li~-~l~~~~~rrr 38 (38)
T 2k1k_A 21 LLGAALLL-GILVFRSRRA 38 (38)
T ss_dssp HHHHHHHH-HHHHHHHCCC
T ss_pred HHHHHHHH-HHHHHHeecC
Confidence 33344433 3445555443
No 11
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=23.23 E-value=1.3e+02 Score=25.99 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEE-e--ccCCCCCHHHH
Q 022332 118 AGVISKVTKSDLKQLLSDLESRKNFHINFITV-R--KLTSKADAFEY 161 (299)
Q Consensus 118 AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV-~--sl~~G~die~y 161 (299)
-|.|+.+-.++|.+.+++++++.++.++|+|- . .+..|.|+.++
T Consensus 21 ~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~ 67 (250)
T 2a7k_A 21 HNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67 (250)
T ss_dssp TCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHH
Confidence 47899999999999999999988888888887 2 34467788665
No 12
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=22.93 E-value=1.6e+02 Score=25.35 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEEe--ccCCCCCHHHHH
Q 022332 118 AGVISKVTKSDLKQLLSDLESRKNFHINFITVR--KLTSKADAFEYA 162 (299)
Q Consensus 118 AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV~--sl~~G~die~yA 162 (299)
-|.|+.+-.++|.+.+++++++....++|+|-. .+..|.|+.++.
T Consensus 20 ~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~ 66 (253)
T 1uiy_A 20 RNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLE 66 (253)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHH
Confidence 588999999999999999999888888888875 344677887654
No 13
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=21.66 E-value=53 Score=21.68 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhheee
Q 022332 276 VVGGLLVIAFVVPMAQYYAYV 296 (299)
Q Consensus 276 ~v~ilLvia~vipm~~~~~y~ 296 (299)
+++.+++++++. .+.||++.
T Consensus 16 VVgGv~~v~ii~-~~~~~~~R 35 (44)
T 2l2t_A 16 VIGGLFILVIVG-LTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHHH-HHHHHHHH
T ss_pred ehHHHHHHHHHH-HHHHHHhh
Confidence 444455554444 33333333
Done!