Query 022332
Match_columns 299
No_of_seqs 266 out of 1063
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 03:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022332.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022332hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cvra2 c.17.1.2 (A:1-350) Gin 28.3 21 0.0015 30.7 3.8 38 132-170 26-67 (350)
2 d1nnfa_ c.94.1.1 (A:) Ferric-b 26.4 10 0.00074 30.8 1.3 27 122-148 6-32 (308)
3 d1a1va1 c.37.1.14 (A:190-325) 25.8 38 0.0028 24.0 4.5 37 112-148 97-133 (136)
4 d2iuba2 f.17.3.1 (A:286-349) M 25.3 14 0.001 24.0 1.6 15 285-299 50-64 (64)
5 d1j3wa_ d.110.7.1 (A:) Giding 25.0 31 0.0023 25.6 3.9 72 120-192 2-99 (134)
6 d1u8sa1 d.58.18.5 (A:2-87) put 17.0 83 0.0061 20.9 4.5 30 122-151 54-83 (86)
7 d1pdoa_ c.54.1.1 (A:) IIA doma 16.9 1.1E+02 0.0082 21.8 5.6 32 154-188 37-68 (129)
8 d1xpja_ c.108.1.18 (A:) Hypoth 15.7 47 0.0034 24.4 3.0 45 128-173 28-80 (124)
9 d1atga_ c.94.1.1 (A:) Molybdat 15.5 46 0.0034 24.7 3.0 25 127-151 12-36 (231)
10 d2a7ka1 c.14.1.3 (A:1-230) Car 15.4 1.2E+02 0.0085 23.7 5.8 45 117-161 20-67 (230)
No 1
>d1cvra2 c.17.1.2 (A:1-350) Gingipain R (RgpB), N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=28.26 E-value=21 Score=30.69 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHHHHhhcCCeEEEEEEeccCCCC----CHHHHHHHHHHHhC
Q 022332 132 LLSDLESRKNFHINFITVRKLTSKA----DAFEYADQVLEKWY 170 (299)
Q Consensus 132 ~L~~le~~tg~qI~VVTV~sl~~G~----die~yA~~l~~~Wg 170 (299)
.|.+++++.|.++.||++.++ +|. .|++|-+.+++.|+
T Consensus 26 ~l~~~r~~~G~~v~vv~~~~i-~~~~~~~aIr~fi~~~y~~~~ 67 (350)
T d1cvra2 26 DFVDWKNQRGLRTEVKVAEDI-ASPVTANAIQQFVKQEYEKEG 67 (350)
T ss_dssp HHHHHHHHTTCEEEEEEHHHH-CSSCCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCCeEEEEEhhHh-cCCCCHHHHHHHHHHHHhcCC
Confidence 556788899999999999998 553 48888888888875
No 2
>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]}
Probab=26.45 E-value=10 Score=30.80 Aligned_cols=27 Identities=7% Similarity=0.164 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEE
Q 022332 122 SKVTKSDLKQLLSDLESRKNFHINFIT 148 (299)
Q Consensus 122 S~~e~~~L~~~L~~le~~tg~qI~VVT 148 (299)
|..+...+++.+++||++||++|.+++
T Consensus 6 ~~~~~~~~~~l~~~Fek~tGIkV~~~~ 32 (308)
T d1nnfa_ 6 NGQQKEAATAVAKAFEQETGIKVTLNS 32 (308)
T ss_dssp ECSCHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred eCCCHHHHHHHHHHHHHhhCCEEEEEE
Confidence 445577788999999999999998864
No 3
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=25.81 E-value=38 Score=23.96 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=25.5
Q ss_pred CcEecCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEE
Q 022332 112 SYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFIT 148 (299)
Q Consensus 112 ~~V~D~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVT 148 (299)
--|+|++..++..+...+...++.++.+....+..+|
T Consensus 97 ~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~T 133 (136)
T d1a1va1 97 IIICDECHSTDATSILGIGTVLDQAETAGARLVVLAT 133 (136)
T ss_dssp EEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred EEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEe
Confidence 4688999999888777777777766555444444443
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=25.31 E-value=14 Score=24.05 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=8.7
Q ss_pred HHHHHHhhheeecCC
Q 022332 285 FVVPMAQYYAYVSRK 299 (299)
Q Consensus 285 ~vipm~~~~~y~~~~ 299 (299)
+++..+.|+++.+||
T Consensus 50 ~~~~~~~~~~f~rkk 64 (64)
T d2iuba2 50 GVIAVIMVVYFKKKK 64 (64)
T ss_dssp HHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHhccC
Confidence 344455566666665
No 5
>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus [TaxId: 274]}
Probab=25.03 E-value=31 Score=25.58 Aligned_cols=72 Identities=7% Similarity=-0.037 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCeEEEEEEec------c-----CCCCCHHHHH----------HHHHHHhCCCCcc---
Q 022332 120 VISKVTKSDLKQLLSDLESRKNFHINFITVRK------L-----TSKADAFEYA----------DQVLEKWYPSVEE--- 175 (299)
Q Consensus 120 vLS~~e~~~L~~~L~~le~~tg~qI~VVTV~s------l-----~~G~die~yA----------~~l~~~WgiG~e~--- 175 (299)
||+.++.+++++.|++|-..+|.+.++++=++ . +...|++.+| .++.+.-+.|. -
T Consensus 2 v~~~~~~e~i~~vL~~l~~~~Gv~~a~lvs~dGl~ia~~~~~~~~~~~d~~~lAA~~a~~~~~~~~~a~~l~~g~-~~~~ 80 (134)
T d1j3wa_ 2 VLYGAPYERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEAR-FQEE 80 (134)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHCCSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHHTTCSS-CSEE
T ss_pred ccchhHHHHHHHHHHHHhhccCceEEEEECCCCcEEEeecCcCCCccccHHHHHHHHHHHHHHHHHHHHHhcCCC-hhhe
Confidence 68889999999999999999999988766222 1 0124666544 45555555442 1
Q ss_pred --CCcceEEEEEEecCcce
Q 022332 176 --GNNKGIVVLVTSQKEGA 192 (299)
Q Consensus 176 --~~nnGVLlLIa~~deg~ 192 (299)
+.++|.+++...+++..
T Consensus 81 ~ie~~~g~v~i~~~g~~~~ 99 (134)
T d1j3wa_ 81 VHQGERMGLYVDEAGEHAL 99 (134)
T ss_dssp EEECSSCEEEEEESSTTEE
T ss_pred eEEcCCcEEEEEEeCCCcE
Confidence 23567777777766543
No 6
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}
Probab=17.00 E-value=83 Score=20.92 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEEEec
Q 022332 122 SKVTKSDLKQLLSDLESRKNFHINFITVRK 151 (299)
Q Consensus 122 S~~e~~~L~~~L~~le~~tg~qI~VVTV~s 151 (299)
+..+..+|++.|+++.++.|.+|.+-.+..
T Consensus 54 ~~~~~~~l~~~L~~l~~~l~l~i~~~~~~~ 83 (86)
T d1u8sa1 54 SPSNITRVETTLPLLGQQHDLITMMKRTSP 83 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred CcccHHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence 577789999999999999999998866654
No 7
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]}
Probab=16.90 E-value=1.1e+02 Score=21.84 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCccCCcceEEEEEEec
Q 022332 154 SKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQ 188 (299)
Q Consensus 154 ~G~die~yA~~l~~~WgiG~e~~~nnGVLlLIa~~ 188 (299)
.+++++++-.++-+.+.- -..++|||+|.++-
T Consensus 37 ~~~~~~~~~~~~~~~i~~---~~~~~~vliltDl~ 68 (129)
T d1pdoa_ 37 PGENAETLIEKYNAQLAK---LDTTKGVLFLVDTW 68 (129)
T ss_dssp TTCCHHHHHHHHHHHHTT---SCCTTCEEEEESST
T ss_pred CCCCHHHHHHHHHHHHHh---cCCCCCEEEEEecc
Confidence 567888888777776541 23456788877763
No 8
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=15.74 E-value=47 Score=24.44 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEeccCC-C-------CCHHHHHHHHHHHhCCCC
Q 022332 128 DLKQLLSDLESRKNFHINFITVRKLTS-K-------ADAFEYADQVLEKWYPSV 173 (299)
Q Consensus 128 ~L~~~L~~le~~tg~qI~VVTV~sl~~-G-------~die~yA~~l~~~WgiG~ 173 (299)
..-+.++.+.++ |.+|.+.|-+.... + .+..+...+.+++||+-.
T Consensus 28 ~~Ie~l~~l~~~-G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI~Y 80 (124)
T d1xpja_ 28 DVIEQLREYHQL-GFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPY 80 (124)
T ss_dssp HHHHHHHHHHHT-TCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCCCc
Confidence 344666666554 78999999996421 1 123455677789999743
No 9
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]}
Probab=15.53 E-value=46 Score=24.69 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEec
Q 022332 127 SDLKQLLSDLESRKNFHINFITVRK 151 (299)
Q Consensus 127 ~~L~~~L~~le~~tg~qI~VVTV~s 151 (299)
.-+++.+++|+++||.+|.++...+
T Consensus 12 ~~~~~l~~~Fe~~tGi~V~~~~g~s 36 (231)
T d1atga_ 12 GTLEQLAGQFAKQTGHAVVISSGSS 36 (231)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECH
T ss_pred HHHHHHHHHHHHhhCCEEEEEECCh
Confidence 3478889999999999999876543
No 10
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}
Probab=15.42 E-value=1.2e+02 Score=23.74 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEE---eccCCCCCHHHH
Q 022332 117 DAGVISKVTKSDLKQLLSDLESRKNFHINFITV---RKLTSKADAFEY 161 (299)
Q Consensus 117 ~AgvLS~~e~~~L~~~L~~le~~tg~qI~VVTV---~sl~~G~die~y 161 (299)
..|.||.+-..+|.+.+++++++.+..++|++- +.+..|.|+.++
T Consensus 20 ~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~ 67 (230)
T d2a7ka1 20 KHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67 (230)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccc
Confidence 347899999999999999999988888887763 235567777654
Done!