Query 022333
Match_columns 299
No_of_seqs 82 out of 84
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 03:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g80_A Protein B2; RNA-binding 78.9 2.5 8.6E-05 33.8 4.6 28 233-260 49-76 (97)
2 2az0_A B2 protein; protein-RNA 65.8 8.5 0.00029 29.5 4.6 36 225-260 12-52 (73)
3 1xn7_A Hypothetical protein YH 57.6 3.5 0.00012 31.1 1.2 25 224-248 15-39 (78)
4 2ou3_A Tellurite resistance pr 56.9 79 0.0027 25.8 10.1 91 131-245 43-136 (161)
5 1qgp_A Protein (double strande 52.2 6.5 0.00022 29.2 1.9 36 211-246 17-52 (77)
6 2kj1_A BM2 protein; cytoplasmi 50.7 22 0.00075 27.6 4.7 34 236-269 18-51 (89)
7 2k02_A Ferrous iron transport 48.3 4.4 0.00015 31.5 0.4 24 225-248 16-39 (87)
8 3gl5_A Putative DSBA oxidoredu 46.5 1.4E+02 0.0048 25.6 11.0 99 142-247 57-160 (239)
9 1qbj_A Protein (double-strande 45.8 11 0.00039 28.4 2.4 34 213-246 15-48 (81)
10 3r8s_N 50S ribosomal protein L 45.6 14 0.00047 30.7 3.0 78 134-212 12-101 (120)
11 2zjr_K 50S ribosomal protein L 44.8 14 0.00049 30.3 3.0 77 135-212 13-101 (116)
12 2jt1_A PEFI protein; solution 40.9 15 0.0005 27.6 2.3 23 225-247 24-46 (77)
13 3axj_A GM27569P, translin; tra 40.1 1.8E+02 0.0061 26.1 9.7 37 232-271 196-232 (249)
14 1gd8_A 50S ribosomal protein L 38.0 9.8 0.00034 31.4 1.0 77 135-212 13-101 (118)
15 3lsg_A Two-component response 37.8 64 0.0022 23.7 5.5 41 225-265 19-66 (103)
16 2k9s_A Arabinose operon regula 36.9 64 0.0022 23.9 5.4 42 224-265 19-67 (107)
17 3feu_A Putative lipoprotein; a 33.4 59 0.002 26.7 5.1 24 224-247 107-131 (185)
18 1ec6_A RNA-binding protein NOV 33.2 40 0.0014 24.9 3.6 28 251-278 57-84 (87)
19 3n1e_A Vacuolar protein sortin 33.0 1.1E+02 0.0037 25.7 6.7 102 123-257 7-127 (141)
20 3eyi_A Z-DNA-binding protein 1 32.5 21 0.00072 27.4 1.9 33 213-250 15-48 (72)
21 2jtw_A Transmembrane helix 7 o 32.1 16 0.00055 23.0 1.0 11 204-214 7-17 (26)
22 3bbo_P Ribosomal protein L17; 28.5 21 0.0007 32.2 1.5 78 134-212 101-190 (205)
23 3kw6_A 26S protease regulatory 26.5 12 0.00041 26.9 -0.3 44 132-178 1-44 (78)
24 3fsp_A A/G-specific adenine gl 26.4 79 0.0027 29.2 5.1 70 71-153 14-92 (369)
25 2g3q_A Protein YBL047C; endocy 25.9 43 0.0015 21.9 2.4 29 225-254 5-33 (43)
26 2dak_A Ubiquitin carboxyl-term 25.0 64 0.0022 23.0 3.3 39 223-265 8-46 (63)
27 3pls_A Macrophage-stimulating 23.9 1.1E+02 0.0036 25.5 5.0 22 115-137 209-230 (298)
28 3oio_A Transcriptional regulat 23.8 1.3E+02 0.0045 22.3 5.2 42 224-265 22-70 (113)
29 2g3v_A CAG pathogenicity islan 23.7 83 0.0028 27.3 4.3 100 143-267 73-183 (208)
30 2gqb_A Conserved hypothetical 22.5 3E+02 0.01 23.0 7.4 69 184-257 47-118 (130)
31 2l76_A Nfatc2-interacting prot 22.2 18 0.00061 28.9 -0.1 22 137-158 41-62 (95)
32 2y1q_A CLPC N-domain, negative 22.1 2.6E+02 0.0089 21.6 6.8 97 141-251 44-143 (150)
33 2heo_A Z-DNA binding protein 1 21.8 65 0.0022 22.7 2.9 36 213-250 15-50 (67)
34 3kzq_A Putative uncharacterize 21.0 80 0.0028 26.0 3.7 39 209-247 107-147 (208)
35 4aw0_A HPDK1, 3-phosphoinositi 20.7 75 0.0026 29.0 3.7 57 116-174 216-274 (311)
36 2cqm_A Ribosomal protein L17 i 20.6 25 0.00086 29.1 0.5 75 137-212 3-91 (122)
37 3c1x_A Hepatocyte growth facto 20.4 1.6E+02 0.0054 26.5 5.8 21 115-136 277-297 (373)
38 3l9s_A Thiol:disulfide interch 20.3 1.7E+02 0.0057 24.2 5.5 36 212-247 93-129 (191)
39 3oou_A LIN2118 protein; protei 20.1 1.7E+02 0.0057 21.6 5.0 42 224-265 20-68 (108)
No 1
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=78.95 E-value=2.5 Score=33.83 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.9
Q ss_pred HhcCCChhhhhhhHHHHHhhHHHHHHHH
Q 022333 233 AVLNVNKRSVDRDLDVYRNLLSKLLQAK 260 (299)
Q Consensus 233 ~~Lgls~ekv~KDL~lYrsnLeKmaQA~ 260 (299)
.+|....++|.|||+-|+.-|.|++|-.
T Consensus 49 ~sl~~qDpnV~kDLdn~~acL~k~~~t~ 76 (97)
T 3g80_A 49 QTLMIADPNVNKDLRAFCEFLTVQHQRA 76 (97)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCchHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999998854
No 2
>2az0_A B2 protein; protein-RNA complex, four-helix bundle, viral protein/RNA complex; HET: 5BU; 2.60A {Flock house virus} SCOP: a.30.8.1 PDB: 2az2_A* 2b9z_A
Probab=65.83 E-value=8.5 Score=29.50 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=27.0
Q ss_pred HHHHHHHHH---hcCCCh--hhhhhhHHHHHhhHHHHHHHH
Q 022333 225 PTVLEKLCA---VLNVNK--RSVDRDLDVYRNLLSKLLQAK 260 (299)
Q Consensus 225 ~~~l~~l~~---~Lgls~--ekv~KDL~lYrsnLeKmaQA~ 260 (299)
|.-|+++++ ++-+.. ++|.|||+-|+.-|.|++|-.
T Consensus 12 P~~l~q~~q~v~~~t~qda~pnV~kDLdn~~acL~k~~~t~ 52 (73)
T 2az0_A 12 PDRIQTAVEAAMGMSYQDAPNNVRRDLDNLHACLNKAKLTV 52 (73)
T ss_dssp HHHHHHHHHTGGGSCCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 556666663 333444 899999999999999998854
No 3
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=57.58 E-value=3.5 Score=31.11 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=21.2
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHH
Q 022333 224 EPTVLEKLCAVLNVNKRSVDRDLDV 248 (299)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~l 248 (299)
..-.+++|++.||+|+.-|.+||+.
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 3446888999999999999999953
No 4
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=56.88 E-value=79 Score=25.77 Aligned_cols=91 Identities=11% Similarity=0.123 Sum_probs=48.3
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHH
Q 022333 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFA 210 (299)
Q Consensus 131 ~GY~peed~~~IF~Alc~Alg~Dp~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfA 210 (299)
.|--.++++..|-+ ++..+|.+|++.+. +.+ -.. .-++...+..|. ..+.+.+-+-
T Consensus 43 DG~v~~~E~~~i~~-~~~~~~l~~~~~~~----l~~---~~~----------~~~l~~~~~~i~------~~~~~~~~~l 98 (161)
T 2ou3_A 43 DGVISPEEKDWALG-FCASWGVADWVIED----LKT---YEA----------DEALEEVIARSP------QVSMAQRDIL 98 (161)
T ss_dssp SSCCCHHHHHHHHH-HHHHTTCCHHHHHH----HHH---CCC----------CSCHHHHHTTCT------TGGGCHHHHH
T ss_pred cCCCCHHHHHHHHH-HHHHcCCCHHHHHH----Hhh---ccC----------CCCHHHHHHHHH------HHhccHHHHH
Confidence 56666677777666 55677888765432 111 011 112333333332 2222322233
Q ss_pred HHHHHHHhhcCCCC---HHHHHHHHHhcCCChhhhhhh
Q 022333 211 VGLFRLLELANATE---PTVLEKLCAVLNVNKRSVDRD 245 (299)
Q Consensus 211 IGLf~LLE~~~~~d---~~~l~~l~~~Lgls~ekv~KD 245 (299)
-.++.+.-..|..+ ...|.++++.||++...++.=
T Consensus 99 ~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~~~~~l 136 (161)
T 2ou3_A 99 LSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQL 136 (161)
T ss_dssp HHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33444443334444 358999999999998875543
No 5
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=52.25 E-value=6.5 Score=29.16 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHhcCCChhhhhhhH
Q 022333 211 VGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 246 (299)
Q Consensus 211 IGLf~LLE~~~~~d~~~l~~l~~~Lgls~ekv~KDL 246 (299)
-.|+.+|...+..++....+|++.||+++..|++.|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 346677766665666778999999999999999987
No 6
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=50.74 E-value=22 Score=27.64 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=30.9
Q ss_pred CCChhhhhhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 022333 236 NVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR 269 (299)
Q Consensus 236 gls~ekv~KDL~lYrsnLeKmaQA~elmeE~~~~ 269 (299)
|=+++.++|...+.|-+-.|=-||+|-|+|++..
T Consensus 18 ~pnke~inrevsilrh~yqkeiqaketmk~~ls~ 51 (89)
T 2kj1_A 18 GPNKETINREVSILRHSYQKEIQAKETMKEVLSD 51 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5578899999999999999999999999999864
No 7
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=48.27 E-value=4.4 Score=31.46 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCChhhhhhhHHH
Q 022333 225 PTVLEKLCAVLNVNKRSVDRDLDV 248 (299)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~l 248 (299)
.-.+.+|++.||+|+.-|.+||+.
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 446889999999999999999954
No 8
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=46.47 E-value=1.4e+02 Score=25.64 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=58.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCC-cc-hhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH--
Q 022333 142 IFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSK-EG-EVEGLLKDIAERASGKGNFSYSRFFAVGLFRLL-- 217 (299)
Q Consensus 142 IF~Alc~Alg~Dp~qyR~DA~~l~~~A~~~s~~~l~~~~~~-~g-~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LL-- 217 (299)
+-+.+-+-.|..|++.+.--..+..||+..... + .|-.. .+ ...+.-..++ +...++ +-. |.-.||+..
T Consensus 57 ~~~~~~~k~g~~~~~~~~~~~~~~r~a~~~Gl~-f-~~~~~~~~nt~~a~r~~~~--A~~~g~--~~~-~~~alf~a~~~ 129 (239)
T 3gl5_A 57 VLTMLTAKYGMSQEQAQAGEDNLGAQAAAEGLA-Y-RTRDRDHGSTFDLHRLLHL--AKERGR--HEA-LLDAFYRGNFA 129 (239)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCC-C-CCSSCEECCCHHHHHHHHH--HHTTTC--HHH-HHHHHHHHHHT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCC-c-cCCCCCCCChHHHHHHHHH--HHhhCc--HHH-HHHHHHHHHHh
Confidence 344556667888998888888888888866543 1 11110 11 1222211111 112332 322 334566665
Q ss_pred hhcCCCC-HHHHHHHHHhcCCChhhhhhhHH
Q 022333 218 ELANATE-PTVLEKLCAVLNVNKRSVDRDLD 247 (299)
Q Consensus 218 E~~~~~d-~~~l~~l~~~Lgls~ekv~KDL~ 247 (299)
+-.+..| ++.|.++++.+||+.+.+.++|+
T Consensus 130 ~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~ 160 (239)
T 3gl5_A 130 DERSVFNDDERLVELAVGAGLDAEEVRAVLA 160 (239)
T ss_dssp CSSCCSSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHc
Confidence 2223368 99999999999999999988874
No 9
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=45.80 E-value=11 Score=28.41 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=26.0
Q ss_pred HHHHHhhcCCCCHHHHHHHHHhcCCChhhhhhhH
Q 022333 213 LFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 246 (299)
Q Consensus 213 Lf~LLE~~~~~d~~~l~~l~~~Lgls~ekv~KDL 246 (299)
|..+|...++-+.....+|++.||+++..|++.|
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4556654554455678899999999999999987
No 10
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=45.60 E-value=14 Score=30.65 Aligned_cols=78 Identities=17% Similarity=0.272 Sum_probs=61.6
Q ss_pred CCchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCccc---cccccCCcchhHHHHHHHHHHhcCCC
Q 022333 134 PSEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTASS---LVEFPSKEGEVEGLLKDIAERASGKG 201 (299)
Q Consensus 134 ~peed~~~IF~Alc~Alg---------~Dp~qyR~DA~~l~~~A~~~s~~~---l~~~~~~~g~~~~~l~~Ia~~~~~n~ 201 (299)
++.+||.+++..|+.+|= --+..+|.-|++|.-+|+..+... ...|+....-+..++..|+.+-+ +-
T Consensus 12 r~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~elapry~-~R 90 (120)
T 3r8s_N 12 RNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFA-SR 90 (120)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHHHHTT-TC
T ss_pred CChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-CC
Confidence 357899999999998873 357899999999999999776653 55677766678889999998876 45
Q ss_pred CCcchhhHHHH
Q 022333 202 NFSYSRFFAVG 212 (299)
Q Consensus 202 ~F~YSRlfAIG 212 (299)
+--|+|+.=+|
T Consensus 91 ~GGYTRI~K~~ 101 (120)
T 3r8s_N 91 AGGYTRILKCG 101 (120)
T ss_dssp CSCCEEEEEEE
T ss_pred CCCeEEEEECC
Confidence 55799987555
No 11
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=44.84 E-value=14 Score=30.32 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=60.8
Q ss_pred CchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 022333 135 SEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (299)
Q Consensus 135 peed~~~IF~Alc~Alg~---------Dp~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (299)
+.+||.+++..|+.+|=. -++.+|.-|++|.-+|+.-+.. ....|+....-+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (116)
T 2zjr_K 13 NSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYA-ERP 91 (116)
T ss_dssp CTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTT-TSC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 568999999999998743 4789999999999999976654 345666666678889999998886 455
Q ss_pred CcchhhHHHH
Q 022333 203 FSYSRFFAVG 212 (299)
Q Consensus 203 F~YSRlfAIG 212 (299)
--|+|++=+|
T Consensus 92 GGYTRI~K~~ 101 (116)
T 2zjr_K 92 GGYTRILRVG 101 (116)
T ss_dssp SCCCEEEECC
T ss_pred CCeeEEEECC
Confidence 5899987655
No 12
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=40.89 E-value=15 Score=27.62 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCChhhhhhhHH
Q 022333 225 PTVLEKLCAVLNVNKRSVDRDLD 247 (299)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~ 247 (299)
|-.+.+||+.||+|...|.+||.
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHH
Confidence 34688999999999999999994
No 13
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=40.13 E-value=1.8e+02 Score=26.08 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=28.7
Q ss_pred HHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 022333 232 CAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYVDREK 271 (299)
Q Consensus 232 ~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elmeE~~~~EK 271 (299)
...|+++.+-+.|=+|.-|.+++|++. ++=++..|.-
T Consensus 196 f~~Ln~~n~~LRkK~D~lk~sv~KvE~---v~Ydl~vRg~ 232 (249)
T 3axj_A 196 FRLLNLKNDGLRKRFDALKYDVKKIEE---VVYDVSIRGL 232 (249)
T ss_dssp HHHTCCCSSHHHHHHHHHHHHHHHHHH---HHHHHHHTTC
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHH---HHHHhhhcCC
Confidence 357788888899999999999999987 4446666654
No 14
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=38.04 E-value=9.8 Score=31.38 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=59.6
Q ss_pred CchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 022333 135 SEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (299)
Q Consensus 135 peed~~~IF~Alc~Alg---------~Dp~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (299)
+.+||.+++..|+.+|= --+..+|.-|++|.-+|+.-+.. ....|+....-+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (118)
T 1gd8_A 13 HSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYR-DRQ 91 (118)
T ss_dssp -CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTS-SCC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 56899999999998873 35789999999999999966544 345566666678889999998886 455
Q ss_pred CcchhhHHHH
Q 022333 203 FSYSRFFAVG 212 (299)
Q Consensus 203 F~YSRlfAIG 212 (299)
--|+|+.=+|
T Consensus 92 GGYTRI~K~~ 101 (118)
T 1gd8_A 92 GGYTRVLKLA 101 (118)
T ss_dssp SCCEEEEEEE
T ss_pred CCeEEEEECC
Confidence 5899987555
No 15
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=37.76 E-value=64 Score=23.67 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 022333 225 PTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (299)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (299)
+-.+++|++.+|+|+..+.+-+--+-+ +.-+|..|+++|.+
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~~ 66 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLT 66 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999999999887755533 34467777777653
No 16
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=36.95 E-value=64 Score=23.89 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=31.2
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 022333 224 EPTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (299)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (299)
++-.+++|++.+|+|+..+.+-+--+-+ +.-+|..|++++.+
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~ 67 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLST 67 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 4557899999999999999887755433 34577788777764
No 17
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=33.37 E-value=59 Score=26.70 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=21.5
Q ss_pred CHHHHHHHHHhcCC-ChhhhhhhHH
Q 022333 224 EPTVLEKLCAVLNV-NKRSVDRDLD 247 (299)
Q Consensus 224 d~~~l~~l~~~Lgl-s~ekv~KDL~ 247 (299)
+++.|.++++.+|| +.+++++|+.
T Consensus 107 ~~~~L~~~a~~~Gl~d~~~~~~~~~ 131 (185)
T 3feu_A 107 QQEAYSKAFTSRGLVSPYDFNEEQR 131 (185)
T ss_dssp HHHHHHHHHHTTTCCCGGGCCHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56789999999999 9999999874
No 18
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=33.19 E-value=40 Score=24.90 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHhhc
Q 022333 251 NLLSKLLQAKELLKEYVDREKKKREERT 278 (299)
Q Consensus 251 snLeKmaQA~elmeE~~~~EKKKreeR~ 278 (299)
+.-+.+..|+++|++.+..+..||+.++
T Consensus 57 G~~~~v~~A~~~I~~~i~~~~~~r~~~~ 84 (87)
T 1ec6_A 57 GSPAATQAAQYLISQRVTYEQGVRASNP 84 (87)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHHhcccccccccc
Confidence 4578899999999999999888887664
No 19
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=33.03 E-value=1.1e+02 Score=25.69 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=58.9
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCC
Q 022333 123 VTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGN 202 (299)
Q Consensus 123 VTvFd~fm~GY~peed~~~IF~Alc~Alg~Dp~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (299)
..=||++.+-|+ +|+..|++=|+.=.+.=.. ..+..|-.+...+...+..|++..
T Consensus 7 L~efDkv~rdy~--eH~~eI~~KLv~Im~~r~~------------------~~l~~Wd~k~pvpS~~m~tl~Ke~----- 61 (141)
T 3n1e_A 7 LRHFDHITKDYH--DHIAEISAKLVAIMDSLFD------------------KLLSKYEVKAPVPSPCFRNICKQM----- 61 (141)
T ss_dssp HHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHH------------------HHHTTCCCCSSSSCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH------------------HHHHHhccCCCCCCHHHHHHHHHH-----
Confidence 445999999995 9999999887754432111 111245444334555556665421
Q ss_pred CcchhhHHHHHHHHHhhcCCCC-------------HHHHHHHHHhcCC----Chhh--hhhhHHHHHhhHHHHH
Q 022333 203 FSYSRFFAVGLFRLLELANATE-------------PTVLEKLCAVLNV----NKRS--VDRDLDVYRNLLSKLL 257 (299)
Q Consensus 203 F~YSRlfAIGLf~LLE~~~~~d-------------~~~l~~l~~~Lgl----s~ek--v~KDL~lYrsnLeKma 257 (299)
.-|.+.|-..=+.+ .+.+.+-...+++ .+.+ |-+|+..|.++|.||+
T Consensus 62 --------~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~ 127 (141)
T 3n1e_A 62 --------TKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALK 127 (141)
T ss_dssp --------HHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTST
T ss_pred --------HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccC
Confidence 12344441111111 1234444566677 4554 8899999999999875
No 20
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=32.48 E-value=21 Score=27.36 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=24.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHhcCCChhh-hhhhHHHHH
Q 022333 213 LFRLLELANATEPTVLEKLCAVLNVNKRS-VDRDLDVYR 250 (299)
Q Consensus 213 Lf~LLE~~~~~d~~~l~~l~~~Lgls~ek-v~KDL~lYr 250 (299)
++++|+..|+. ..-.|+.+||+...| |+.|| |.
T Consensus 15 I~~fL~~~Gp~---~AL~IAK~LGlktAK~VNp~L--Y~ 48 (72)
T 3eyi_A 15 IYRFLKDNGPQ---RALVIAQALGMRTAKDVNRDL--YR 48 (72)
T ss_dssp HHHHHHHHCSE---EHHHHHHHTTCCSGGGTHHHH--HH
T ss_pred HHHHHHHcCCc---hHHHHHHHhCcchhhhcCHHH--HH
Confidence 57777766543 334588999999999 99998 64
No 21
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=32.13 E-value=16 Score=23.04 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=9.8
Q ss_pred cchhhHHHHHH
Q 022333 204 SYSRFFAVGLF 214 (299)
Q Consensus 204 ~YSRlfAIGLf 214 (299)
.|+|++|+||-
T Consensus 7 sylRlwaLsLa 17 (26)
T 2jtw_A 7 SYLRLWALSLA 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHhhhh
Confidence 59999999985
No 22
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=28.53 E-value=21 Score=32.19 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=61.6
Q ss_pred CCchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCC
Q 022333 134 PSEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKG 201 (299)
Q Consensus 134 ~peed~~~IF~Alc~Alg~---------Dp~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~ 201 (299)
++.+||.+++.-|+.+|=. -++++|..|++|.-+|+..+.. ....|+..+.-+..++..|+.+-+ +.
T Consensus 101 RtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eiaPRY~-dR 179 (205)
T 3bbo_P 101 RPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYG-ER 179 (205)
T ss_dssp SCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSGGGGS-SC
T ss_pred CChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CC
Confidence 3679999999999998743 4789999999999999976654 345667666678888899998886 45
Q ss_pred CCcchhhHHHH
Q 022333 202 NFSYSRFFAVG 212 (299)
Q Consensus 202 ~F~YSRlfAIG 212 (299)
+--|+|+.=+|
T Consensus 180 ~GGYTRIlKlg 190 (205)
T 3bbo_P 180 NGGYTRIIRTL 190 (205)
T ss_dssp CSCCEECCBCS
T ss_pred CCCeeEEEECC
Confidence 55899987655
No 23
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=26.46 E-value=12 Score=26.95 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 022333 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (299)
Q Consensus 132 GY~peed~~~IF~Alc~Alg~Dp~qyR~DA~~l~~~A~~~s~~~l~~ 178 (299)
+.|..++|..||..++.....+++ -|-+.|.+...|.|+.||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~---~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRG---INLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCc---cCHHHHHHHcCCCCHHHHHH
Confidence 457889999999999988776533 13444555556777777664
No 24
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=26.43 E-value=79 Score=29.25 Aligned_cols=70 Identities=14% Similarity=0.289 Sum_probs=47.9
Q ss_pred CchhHhHHHHHhhCCCcCC-----cchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHhhcCCCCchhHHH----
Q 022333 71 PTVAETKMNFLKLYKRPIP-----SIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREA---- 141 (299)
Q Consensus 71 ~TVSDTKr~F~~~y~rPIp-----sIYrrvv~ELLVElHLLs~n~~F~YDplFALGlVTvFd~fm~GY~peed~~~---- 141 (299)
..+.+.=..+|..+.++.| .-|.-+|-++|.++- + .--+..+|.+|++.||..++...
T Consensus 14 ~~~~~~l~~w~~~~~r~lpw~~~~~p~~~lv~~il~qqt--~-----------~~~~~~~~~~l~~~~pt~~~la~a~~~ 80 (369)
T 3fsp_A 14 REFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQT--R-----------VETVIPYFEQFIDRFPTLEALADADED 80 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTS--C-----------HHHHHHHHHHHHHHCCSHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHhccC--c-----------HHHHHHHHHHHHHHCCCHHHHHCCCHH
Confidence 3588888899999999876 567777777776653 1 12367788999999986544321
Q ss_pred HHHHHHHhcCCC
Q 022333 142 IFQAYITALKED 153 (299)
Q Consensus 142 IF~Alc~Alg~D 153 (299)
-...++..+|+-
T Consensus 81 ~l~~~i~~~G~~ 92 (369)
T 3fsp_A 81 EVLKAWEGLGYY 92 (369)
T ss_dssp HHHHTTTTSSCT
T ss_pred HHHHHHHhcChH
Confidence 124456788883
No 25
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=25.93 E-value=43 Score=21.86 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCChhhhhhhHHHHHhhHH
Q 022333 225 PTVLEKLCAVLNVNKRSVDRDLDVYRNLLS 254 (299)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~lYrsnLe 254 (299)
++.+++|.+ |||+.+.+.+=|....++++
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e 33 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLE 33 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHH
Confidence 457888876 89999999998877766554
No 26
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.00 E-value=64 Score=22.96 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHHH
Q 022333 223 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 265 (299)
Q Consensus 223 ~d~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elmeE 265 (299)
.+++.+.+|.+ |||+.+.+.+=|....+| +++|.+.+-+
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~n---ve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTIVS-MGFSRDQALKALRATNNS---LERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSC---SHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCC---HHHHHHHHHh
Confidence 36788999987 799999999988776665 6677776644
No 27
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=23.93 E-value=1.1e+02 Score=25.55 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=16.4
Q ss_pred cccchhhHHHHHHHhhcCCCCch
Q 022333 115 DPVFALGFVTVYDRLMEGYPSEE 137 (299)
Q Consensus 115 DplFALGlVTvFd~fm~GY~pee 137 (299)
..||+||++ .|+-++.|.||..
T Consensus 209 ~Di~slG~i-l~~l~~g~~~~~~ 230 (298)
T 3pls_A 209 SDVWSFGVL-LWELLTRGAPPYR 230 (298)
T ss_dssp HHHHHHHHH-HHHHHHTSCCTTT
T ss_pred hchhhHHHH-HHHHhhCCCCCCc
Confidence 369999964 6788887887643
No 28
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=23.83 E-value=1.3e+02 Score=22.33 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=30.3
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 022333 224 EPTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (299)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (299)
++-.+++|++.+|+|+..+.+-+--+-+ +.-+|..|++++.+
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~ 70 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQ 70 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 4457889999999999988887765522 23467778777764
No 29
>2g3v_A CAG pathogenicity island protein 13; pathogenicity island, type IV secretion system, unknown function; 2.30A {Helicobacter pylori}
Probab=23.68 E-value=83 Score=27.28 Aligned_cols=100 Identities=25% Similarity=0.350 Sum_probs=50.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhH--HHHHHHHHhhc
Q 022333 143 FQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFF--AVGLFRLLELA 220 (299)
Q Consensus 143 F~Alc~Alg~Dp~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlf--AIGLf~LLE~~ 220 (299)
|.|.++++|.|- +++--.-|+. +--.+|.+||+ ||+|.+|+|- -+|+|--.= +
T Consensus 73 yraviksigvdk--fkkvyrlles------------------etmellhaiae----npnflfskfdrsilgiflpff-s 127 (208)
T 2g3v_A 73 YRAVIKSIGVDK--FKKVYRLLES------------------ETMELLHAIAE----NPNFLFSKFDRSILGIFLPFF-S 127 (208)
T ss_dssp HHHHHHHTCHHH--HHHHHHHHHH------------------HHHHHHHHHHH----CTTSSCBGGGGGGGGGTGGGT-C
T ss_pred HHHHHHHhchHH--HHHHHHHHHH------------------HHHHHHHHHHh----CCchhHHhhhHHHHHHhhHhc-c
Confidence 468999999874 2222222221 12237889998 9999999874 345542110 0
Q ss_pred CC----C---C-HHHHHHHHHhcCCChhhhhhhHHH-HHhhHHHHHHHHHHHHHHH
Q 022333 221 NA----T---E-PTVLEKLCAVLNVNKRSVDRDLDV-YRNLLSKLLQAKELLKEYV 267 (299)
Q Consensus 221 ~~----~---d-~~~l~~l~~~Lgls~ekv~KDL~l-YrsnLeKmaQA~elmeE~~ 267 (299)
.+ + + ...++--...|.+-+--|--|-++ |-.||.-++|--..+.+.+
T Consensus 128 kpimfkmsiremdsqielygtklpllklfvmtdeemnfyanlktieqyndyvrdll 183 (208)
T 2g3v_A 128 KPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDEEMNFYANLKTIEQYNDYVRDLL 183 (208)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHCCCHHHHHHHHHTC-
T ss_pred cchhhHhhHHHHhhHHHHhcccchHHHHHHcchHHHHHHHhHhHHHHHHHHHHHHH
Confidence 00 0 0 113444445555554444333322 2245556666655555443
No 30
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=22.52 E-value=3e+02 Score=23.05 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=49.5
Q ss_pred chhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCh---hhhhhhHHHHHhhHHHHH
Q 022333 184 GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNK---RSVDRDLDVYRNLLSKLL 257 (299)
Q Consensus 184 g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~~d~~~l~~l~~~Lgls~---ekv~KDL~lYrsnLeKma 257 (299)
-++..+|..++++.+.+-+|.-| -|-|+.||.+ ....+.=++|+..||++. +.....+-|.|-++.||+
T Consensus 47 VDV~avL~~~~~~~~~~lnWrtS---IVDLmKlLgl--DsSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk~vm~kLa 118 (130)
T 2gqb_A 47 IDVAPILDKAVKAKGEKLEWRTS---IVDLMKALDI--DSSLSARKELAKELGYSGDMNDSASMNIWLHKQVMSKLV 118 (130)
T ss_dssp EECHHHHHHHHHHHSSCCCTTTC---HHHHHHHTCC--CCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHHHHcCcCCccHHH---HHHHHHHhCC--CccHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 47889999998877655566555 4556666622 234678899999999874 456667788888888876
No 31
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=22.21 E-value=18 Score=28.85 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhcCCCHHHHH
Q 022333 137 EDREAIFQAYITALKEDPEQYR 158 (299)
Q Consensus 137 ed~~~IF~Alc~Alg~Dp~qyR 158 (299)
....+||+|||+-.|.++..+|
T Consensus 41 t~l~KL~~aYc~r~gv~~~sir 62 (95)
T 2l76_A 41 EPLQSVVDHMATHLGVSPSRIL 62 (95)
T ss_dssp SCTHHHHHHHHHHHTSCGGGEE
T ss_pred ChHHHHHHHHHhhcCCChhhEE
Confidence 4468999999999999998765
No 32
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=22.11 E-value=2.6e+02 Score=21.57 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHH---HHHHHHhcCCCCCcchhhHHHHHHHHH
Q 022333 141 AIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLL---KDIAERASGKGNFSYSRFFAVGLFRLL 217 (299)
Q Consensus 141 ~IF~Alc~Alg~Dp~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l---~~Ia~~~~~n~~F~YSRlfAIGLf~LL 217 (299)
.+...+++..|.|++.++++.+...+ ..+... ....-....+.+| ..+|.+. +..|-=+--+ |+.|+
T Consensus 44 ~~~~~iL~~~g~~~~~l~~~l~~~l~---~~~~~~--~~~~~s~~~~~vL~~A~~~A~~~--~~~~i~~ehl---Llall 113 (150)
T 2y1q_A 44 GIAAKALQALGLGSEKIQKEVESLIG---RAQEMS--QTIHYTPRAKKVIELSMDEARKL--GHSYVGTEHI---LLGLI 113 (150)
T ss_dssp SHHHHHHHHTTCCHHHHHHHHHHHHC---CC-------CCEECHHHHHHHHHHHHHHHHT--TCSSBCHHHH---HHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHhc---cCCccc--ccCCCCHHHHHHHHHHHHHHHHc--CCCeecHHHH---HHHHH
Confidence 46778899999999999988766543 222111 0011122344444 2333322 3333323222 23333
Q ss_pred hhcCCCCHHHHHHHHHhcCCChhhhhhhHHHHHh
Q 022333 218 ELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 251 (299)
Q Consensus 218 E~~~~~d~~~l~~l~~~Lgls~ekv~KDL~lYrs 251 (299)
+.. +. ...++...+|++.+.+.+.+.-+++
T Consensus 114 ~~~---~~-~a~~~L~~~gi~~~~l~~~i~~~~g 143 (150)
T 2y1q_A 114 REG---EG-VAARVLNNLGVSLNKARQQVLQLLG 143 (150)
T ss_dssp HHC---CS-HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCC---Cc-HHHHHHHHcCCCHHHHHHHHHHHHC
Confidence 221 11 2345666779999988887765544
No 33
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=21.78 E-value=65 Score=22.74 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHhcCCChhhhhhhHHHHH
Q 022333 213 LFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYR 250 (299)
Q Consensus 213 Lf~LLE~~~~~d~~~l~~l~~~Lgls~ekv~KDL~lYr 250 (299)
|..+|... ..|-...+|++.+|+|...|.|.|...+
T Consensus 15 IL~~L~~~--~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 15 ILQVLSDD--GGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHH--CSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44555322 1345678899999999999999986543
No 34
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=21.02 E-value=80 Score=25.96 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=29.2
Q ss_pred HHHHHHHHH--hhcCCCCHHHHHHHHHhcCCChhhhhhhHH
Q 022333 209 FAVGLFRLL--ELANATEPTVLEKLCAVLNVNKRSVDRDLD 247 (299)
Q Consensus 209 fAIGLf~LL--E~~~~~d~~~l~~l~~~Lgls~ekv~KDL~ 247 (299)
|.-.||+.. +-.+..|++.|.++++.+||+.+.+.++++
T Consensus 107 ~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~ 147 (208)
T 3kzq_A 107 MLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMD 147 (208)
T ss_dssp HHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 444566665 222336889999999999999999988874
No 35
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=20.72 E-value=75 Score=29.03 Aligned_cols=57 Identities=26% Similarity=0.385 Sum_probs=37.2
Q ss_pred ccchhhHHHHHHHhhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcc
Q 022333 116 PVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTAS 174 (299)
Q Consensus 116 plFALGlVTvFd~fm~GY~p--eed~~~IF~Alc~Alg~Dp~qyR~DA~~l~~~A~~~s~~ 174 (299)
.|||||++ +|+.++ |.+| .++...+++.+++.-=.-|+.+-.+++.|....-...++
T Consensus 216 DiWSlGvi-lyeml~-G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~ 274 (311)
T 4aw0_A 216 DLWALGCI-IYQLVA-GLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 274 (311)
T ss_dssp HHHHHHHH-HHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGG
T ss_pred HHHHHHHH-HHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccCCHh
Confidence 49999976 566555 6666 456778888888754333555666677776655444443
No 36
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=20.59 E-value=25 Score=29.07 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc-----ccccccCCcchhHHHHHHHHHHhcCCCC
Q 022333 137 EDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS-----SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (299)
Q Consensus 137 ed~~~IF~Alc~Alg---------~Dp~qyR~DA~~l~~~A~~~s~~-----~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (299)
.||.+++.-|+.+|= --++.+|.-|++|.-+|+.-+.. ....|+....-+..++..|+.+-+ +-+
T Consensus 3 ~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~-~R~ 81 (122)
T 2cqm_A 3 SGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYK-DQT 81 (122)
T ss_dssp CCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHH-HSC
T ss_pred HHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhc-CCC
Confidence 455666666666652 24788999999999999966644 344577766778888999988776 444
Q ss_pred CcchhhHHHH
Q 022333 203 FSYSRFFAVG 212 (299)
Q Consensus 203 F~YSRlfAIG 212 (299)
--|+|++=+|
T Consensus 82 GGYTRI~K~~ 91 (122)
T 2cqm_A 82 GGYTRMLQIP 91 (122)
T ss_dssp SCCEEEEEEC
T ss_pred CCeeEEEECC
Confidence 5799987665
No 37
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=20.42 E-value=1.6e+02 Score=26.53 Aligned_cols=21 Identities=19% Similarity=0.589 Sum_probs=15.4
Q ss_pred cccchhhHHHHHHHhhcCCCCc
Q 022333 115 DPVFALGFVTVYDRLMEGYPSE 136 (299)
Q Consensus 115 DplFALGlVTvFd~fm~GY~pe 136 (299)
..||++|++ .|+-++.|.+|-
T Consensus 277 ~DvwSlG~i-l~ellt~~~~p~ 297 (373)
T 3c1x_A 277 SDVWSFGVL-LWELMTRGAPPY 297 (373)
T ss_dssp HHHHHHHHH-HHHHHTTSCCSC
T ss_pred HHHHHHHHH-HHHHHhCcCCCC
Confidence 358999965 677777777664
No 38
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=20.27 E-value=1.7e+02 Score=24.18 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=27.4
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHhcCCChhhhhhhHH
Q 022333 212 GLFRLLEL-ANATEPTVLEKLCAVLNVNKRSVDRDLD 247 (299)
Q Consensus 212 GLf~LLE~-~~~~d~~~l~~l~~~Lgls~ekv~KDL~ 247 (299)
.||..+-. .+..+++.|.++++.+|++.++++++++
T Consensus 93 ~lf~a~~~~~~~~~~~~L~~~a~~~Gld~~~~~~~~~ 129 (191)
T 3l9s_A 93 PLFEAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWN 129 (191)
T ss_dssp HHHHHHHTSCCCSSHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 46666522 2245788999999999999999998873
No 39
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=20.10 E-value=1.7e+02 Score=21.60 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=29.2
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 022333 224 EPTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (299)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (299)
++-.+++|++.+|+|+..+.+-+--+-+ +.-+|..|+++|.+
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~ 68 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEELLQ 68 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 3457888999999999988887655422 23467777777653
Done!