Query 022333
Match_columns 299
No_of_seqs 82 out of 84
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 03:47:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022333.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022333hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j5ya1 a.4.5.1 (A:3-67) Putat 39.0 5.7 0.00042 26.7 1.5 25 224-248 21-45 (65)
2 d2zjrk1 d.188.1.1 (K:3-115) Pr 37.9 17 0.0013 27.6 4.4 77 135-212 11-99 (113)
3 d3ci0k2 a.60.16.1 (K:94-203) P 37.8 17 0.0012 26.7 4.2 33 138-170 18-50 (110)
4 d1u2za_ c.66.1.31 (A:) Catalyt 36.8 24 0.0017 31.7 5.9 134 103-246 76-223 (406)
5 d1biaa1 a.4.5.1 (A:1-63) Bioti 35.2 8.4 0.00061 25.9 1.9 23 225-247 19-41 (63)
6 d2dt5a1 a.4.5.38 (A:4-77) Tran 33.7 9 0.00065 27.4 1.9 26 224-249 24-49 (74)
7 d2g5ca1 a.100.1.12 (A:201-310) 30.4 42 0.0031 24.5 5.4 51 222-275 53-108 (110)
8 d1m5ya1 a.223.1.2 (A:25-164,A: 27.5 98 0.0071 22.8 7.3 41 123-166 73-113 (173)
9 d1mzba_ a.4.5.42 (A:) Ferric u 26.2 29 0.0021 25.5 3.8 31 131-161 10-42 (134)
10 d1a87a_ f.1.1.1 (A:) Colicin N 22.6 56 0.0041 28.6 5.5 73 155-238 126-202 (297)
11 d1uu3a_ d.144.1.7 (A:) 3-phosp 22.4 22 0.0016 29.4 2.7 54 116-171 192-247 (288)
12 d1v9da_ a.207.1.1 (A:) Diaphan 22.1 88 0.0064 26.2 6.7 18 226-243 268-285 (332)
13 d1i4aa_ a.65.1.1 (A:) Annexin 21.8 51 0.0037 27.9 5.1 79 131-218 2-90 (309)
14 d1whca_ a.5.2.1 (A:) UBA/UBX 3 21.7 24 0.0018 24.0 2.3 40 223-265 8-47 (64)
15 d1vola1 a.74.1.2 (A:113-207) T 21.6 40 0.0029 23.4 3.6 29 226-254 7-35 (95)
16 d1rdqe_ d.144.1.7 (E:) cAMP-de 21.4 27 0.0019 29.7 3.1 55 116-172 220-276 (350)
No 1
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=38.97 E-value=5.7 Score=26.70 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=21.5
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHH
Q 022333 224 EPTVLEKLCAVLNVNKRSVDRDLDV 248 (299)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~l 248 (299)
++-..++|++.||+|...|.|||+.
T Consensus 21 ~~vs~~~La~~l~VS~~TI~rdi~~ 45 (65)
T d1j5ya1 21 EPVSGAQLAEELSVSRQVIVQDIAY 45 (65)
T ss_dssp SCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHHH
Confidence 4556889999999999999999964
No 2
>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17 {Deinococcus radiodurans [TaxId: 1299]}
Probab=37.91 E-value=17 Score=27.61 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=60.0
Q ss_pred CchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 022333 135 SEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (299)
Q Consensus 135 peed~~~IF~Alc~Alg---------~Dp~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (299)
+.+||.+++.-|+.+|= --+..+|..+++|.-+|+..+.. .+..|+.....+..++..|+.+-. +-+
T Consensus 11 ~~~hR~allrnl~~sLi~herI~TT~~KAKelr~~~EklIT~AK~~~~~~rr~~~~~l~~k~~v~kLf~~iapry~-~R~ 89 (113)
T d2zjrk1 11 NSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYA-ERP 89 (113)
T ss_dssp CTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTT-TSC
T ss_pred ChHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHheecccCChhhhhhhhhhcccHHHHHHHHHHHhHHhc-CCC
Confidence 56899999999998873 34789999999999999987775 445666666668889999998886 455
Q ss_pred CcchhhHHHH
Q 022333 203 FSYSRFFAVG 212 (299)
Q Consensus 203 F~YSRlfAIG 212 (299)
--|+|++=+|
T Consensus 90 GGYTRI~kl~ 99 (113)
T d2zjrk1 90 GGYTRILRVG 99 (113)
T ss_dssp SCCCEEEECC
T ss_pred CCeEEEEECC
Confidence 5799876544
No 3
>d3ci0k2 a.60.16.1 (K:94-203) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=37.76 E-value=17 Score=26.69 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 022333 138 DREAIFQAYITALKEDPEQYRIDAQKLEEWARG 170 (299)
Q Consensus 138 d~~~IF~Alc~Alg~Dp~qyR~DA~~l~~~A~~ 170 (299)
..-..|..|+..+|.|+.+-+.-|..+.+|...
T Consensus 18 ~~~~~f~~Ll~~lgi~~~~a~~la~~l~DWiD~ 50 (110)
T d3ci0k2 18 LAVQQLIALISRLDVPAYRAELIAESLWEFIDE 50 (110)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCc
Confidence 345689999999999999999999999998864
No 4
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.83 E-value=24 Score=31.73 Aligned_cols=134 Identities=12% Similarity=0.132 Sum_probs=84.9
Q ss_pred HhhhcccccccccccchhhHHHHHHHhhcCCCCchhHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcCCccccc
Q 022333 103 QHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALK-----EDPEQYRIDAQKLEEWARGQTASSLV 177 (299)
Q Consensus 103 lHLLs~n~~F~YDplFALGlVTvFd~fm~GY~peed~~~IF~Alc~Alg-----~Dp~qyR~DA~~l~~~A~~~s~~~l~ 177 (299)
-||..-.....|||+.=+ +.+++-.-+.|-|++..+.|-+.+|..+. -|....+.--.+.-++......+++.
T Consensus 76 ~~~~~~~~~~~~~p~~ei--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~i~~~~~~~~~ 153 (406)
T d1u2za_ 76 YKVDFKRSTAIYNPMSEI--GKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAINLYNKMIREIPRQRII 153 (406)
T ss_dssp EECCSSSCCSSSCHHHHH--HHHHHHHHHTTCCTTHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred EEEeccccccccCCHHHH--HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 466677788899999988 67899999999999999999999888664 56666676667776666666655554
Q ss_pred cccCC-cchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhc--------CCCCHHHHHHHHHhcCCChhhhhhhH
Q 022333 178 EFPSK-EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELA--------NATEPTVLEKLCAVLNVNKRSVDRDL 246 (299)
Q Consensus 178 ~~~~~-~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~--------~~~d~~~l~~l~~~Lgls~ekv~KDL 246 (299)
..+.. ++-+...+..|.... |+|..+-= .+.|..- |...+..+.++.+.+++.+..+==||
T Consensus 154 ~~l~~~~~~~~~~~~~i~~~~-------y~r~v~p~-~~~L~~Y~~fs~~vYGEl~~~~i~~Il~~l~Lkpgd~fLDL 223 (406)
T d1u2za_ 154 DHLETIDKIPRSFIHDFLHIV-------YTRSIHPQ-ANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDL 223 (406)
T ss_dssp HHHTTCCEEEHHHHHHHHHHH-------HHHHTGGG-GGGGCSCCSSGGGCCCCBCHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHhhcCCCCHHHHHHHHHHh-------hcccccCC-hHHhcccCCCCCCccccCCHHHHHHHHHHhCCCCCCEEEeC
Confidence 44432 222333333333222 55544211 0011111 11136788888888888887654444
No 5
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.22 E-value=8.4 Score=25.87 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCChhhhhhhHH
Q 022333 225 PTVLEKLCAVLNVNKRSVDRDLD 247 (299)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~ 247 (299)
.-..++|++.||+|...|.+|+.
T Consensus 19 ~~s~~eLa~~l~vS~~ti~r~i~ 41 (63)
T d1biaa1 19 FHSGEQLGETLGMSRAAINKHIQ 41 (63)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHH
Confidence 34678999999999999999985
No 6
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=33.69 E-value=9 Score=27.39 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.5
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHHH
Q 022333 224 EPTVLEKLCAVLNVNKRSVDRDLDVY 249 (299)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~lY 249 (299)
+.-.-++|++.+|+++.-|.|||..+
T Consensus 24 ~~vSS~~La~~~gi~~~qVRKDls~f 49 (74)
T d2dt5a1 24 HRTSSEQLGGLAQVTAFQVRKDLSYF 49 (74)
T ss_dssp CEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred eeEcHHHHHHHHCcCHHHHHHHHHHh
Confidence 33456788999999999999999865
No 7
>d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}
Probab=30.37 E-value=42 Score=24.51 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHH-----HHHHHHHHHHhhhHH
Q 022333 222 ATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAK-----ELLKEYVDREKKKRE 275 (299)
Q Consensus 222 ~~d~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~-----elmeE~~~~EKKKre 275 (299)
..+|++-.+|+.. +++-|-+-|+-|...|+++..+. +-+.++++.-|++|.
T Consensus 53 ~s~p~mW~dI~~~---N~~~i~~~l~~~~~~L~~~~~~l~~~D~~~l~~~l~~a~~~R~ 108 (110)
T d2g5ca1 53 KSDPIMWRDIFLE---NKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKEVKIKRM 108 (110)
T ss_dssp CSCHHHHHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4578887777643 67889999999999999999885 567777777776664
No 8
>d1m5ya1 a.223.1.2 (A:25-164,A:395-427) Porin chaperone SurA, peptide-binding domain {Escherichia coli [TaxId: 562]}
Probab=27.52 E-value=98 Score=22.80 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=24.5
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 022333 123 VTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEE 166 (299)
Q Consensus 123 VTvFd~fm~GY~peed~~~IF~Alc~Alg~Dp~qyR~DA~~l~~ 166 (299)
-..++++.+.+... .+. |.+++.+.|+++++||+.-+.-.-
T Consensus 73 ~~~i~~~~~~~~~~--~~~-f~~~L~~~g~~~~~~~~~ir~~l~ 113 (173)
T d1m5ya1 73 DQAIANIAKQNNMT--LDQ-MRSRLAYDGLNYNTYRNQIRKEMI 113 (173)
T ss_dssp HHHHHHHHHHTTCC--HHH-HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--HHH-HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33445554444322 222 777888889999998887654333
No 9
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.17 E-value=29 Score=25.54 Aligned_cols=31 Identities=19% Similarity=0.082 Sum_probs=25.6
Q ss_pred cCCCCchhHHHHHHHHHHhcC--CCHHHHHHHH
Q 022333 131 EGYPSEEDREAIFQAYITALK--EDPEQYRIDA 161 (299)
Q Consensus 131 ~GY~peed~~~IF~Alc~Alg--~Dp~qyR~DA 161 (299)
.||++...|..|+++|.++-+ ++++++-+..
T Consensus 10 ~GlR~T~qR~~Il~~L~~~~~~h~sa~ei~~~l 42 (134)
T d1mzba_ 10 AGLKVTLPRVKILQMLDSAEQRHMSAEDVYKAL 42 (134)
T ss_dssp TTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 699999999999999998865 7887776654
No 10
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=22.63 E-value=56 Score=28.63 Aligned_cols=73 Identities=11% Similarity=0.175 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHh---cCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCC-HHHHHH
Q 022333 155 EQYRIDAQKLEEWAR---GQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATE-PTVLEK 230 (299)
Q Consensus 155 ~qyR~DA~~l~~~A~---~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~~d-~~~l~~ 230 (299)
++|.+-|+.|.+-++ |+..-+ .+..|+.+ ++...|++.++|.=-=-.|...||..+.++ .+.|.+
T Consensus 126 ~Kyk~lA~eLA~~aKnfqGKkIRs----------vdeALks~-eK~~~n~nkKinakDR~AI~nALksid~~~mAkNL~k 194 (297)
T d1a87a_ 126 VKYKNVAKEVANDIKNFHGRNIRS----------YNEAMASL-NKVLANPKMKVNKSDKDAIVNAWKQVNAKDMANKIGN 194 (297)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCC----------HHHHHHHH-HHHHTCTTCCCCHHHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccCCccCC----------HHHHHHHH-HHHhhCccccccccCHHHHHHHHHhcCHHHHHHHHHH
Confidence 578888999999998 555432 34466555 355669999999776677788888776655 356777
Q ss_pred HHHhcCCC
Q 022333 231 LCAVLNVN 238 (299)
Q Consensus 231 l~~~Lgls 238 (299)
++..+|+-
T Consensus 195 fsK~Fk~~ 202 (297)
T d1a87a_ 195 LGKAFKVA 202 (297)
T ss_dssp TCGGGCCT
T ss_pred HHhhcCcc
Confidence 77888775
No 11
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.40 E-value=22 Score=29.36 Aligned_cols=54 Identities=28% Similarity=0.366 Sum_probs=33.9
Q ss_pred ccchhhHHHHHHHhhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Q 022333 116 PVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQ 171 (299)
Q Consensus 116 plFALGlVTvFd~fm~GY~p--eed~~~IF~Alc~Alg~Dp~qyR~DA~~l~~~A~~~ 171 (299)
.|||||+ +.|+-++ |.+| .++...+++.+++.--.-|+.+-.+++.|....-..
T Consensus 192 DiwSlGv-ilyell~-g~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~ 247 (288)
T d1uu3a_ 192 DLWALGC-IIYQLVA-GLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVL 247 (288)
T ss_dssp HHHHHHH-HHHHHHH-SSCSSCCSSHHHHHHHHHTTCCCCCTTCCHHHHHHHHTTSCS
T ss_pred ceehhhH-HHHHHhh-CCCCCCCcCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccC
Confidence 4999995 5677666 6665 345677888877654333455556666666643333
No 12
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.11 E-value=88 Score=26.22 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCChhhhh
Q 022333 226 TVLEKLCAVLNVNKRSVD 243 (299)
Q Consensus 226 ~~l~~l~~~Lgls~ekv~ 243 (299)
+...+++..+|-.+.+..
T Consensus 268 ~~~~~~~~yfgEd~~~~~ 285 (332)
T d1v9da_ 268 TLYKELGDYFVFDPKKLS 285 (332)
T ss_dssp HHHHHHHHHTTCCTTTSC
T ss_pred HHHHHHHHHhCCCCCCCC
Confidence 578899999998776544
No 13
>d1i4aa_ a.65.1.1 (A:) Annexin IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.77 E-value=51 Score=27.94 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=43.0
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHhcCCccccccccCC--cchhHHHHHHHHHHhcCC
Q 022333 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDA--------QKLEEWARGQTASSLVEFPSK--EGEVEGLLKDIAERASGK 200 (299)
Q Consensus 131 ~GY~peed~~~IF~Alc~Alg~Dp~qyR~DA--------~~l~~~A~~~s~~~l~~~~~~--~g~~~~~l~~Ia~~~~~n 200 (299)
.||-|+.|-..|.+| ++..|-|.+.+-+.- +.+...-+.....+|.+.+.+ .|..+..+..+..
T Consensus 2 ~~fd~~~Da~~L~~A-~kg~g~de~~ii~IL~~rs~~qr~~i~~~Y~~~yg~dL~~~L~~e~sG~~~~~l~~l~~----- 75 (309)
T d1i4aa_ 2 SGFNAAEDAQTLRKA-MKGLGTDEDAIINVLAYRSTAQRQEIRTAYKTTIGRDLMDDLKSELSGNFEQVILGMMT----- 75 (309)
T ss_dssp CSCCHHHHHHHHHHH-HSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHS-----
T ss_pred CCCCHHHHHHHHHHH-hhCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHHhCchHHHHHHHHhC-----
Confidence 478888888888887 466666655543221 112222222223333333332 4556666654442
Q ss_pred CCCcchhhHHHHHHHHHh
Q 022333 201 GNFSYSRFFAVGLFRLLE 218 (299)
Q Consensus 201 ~~F~YSRlfAIGLf~LLE 218 (299)
....+.|.-|...|.
T Consensus 76 ---~p~~~dA~~l~~A~k 90 (309)
T d1i4aa_ 76 ---PTVLYDVQELRKAMK 90 (309)
T ss_dssp ---CHHHHHHHHHHHHHS
T ss_pred ---CHHHHHHHHHHHHhc
Confidence 246678888888885
No 14
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.70 E-value=24 Score=23.99 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHHH
Q 022333 223 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 265 (299)
Q Consensus 223 ~d~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elmeE 265 (299)
.|++.|.+|++ |||+.+.+.|=|-.-.+ .-+++|.+-|-+
T Consensus 8 ~d~~~l~~L~~-MGF~~~~a~~AL~~t~n--~~~e~A~~Wl~~ 47 (64)
T d1whca_ 8 AELTALESLIE-MGFPRGRAEKALALTGN--QGIEAAMDWLME 47 (64)
T ss_dssp CCCCHHHHHHT-TTCCHHHHHHHHHHHTS--CCHHHHHHHHHH
T ss_pred cCHHHHHHHHH-cCCCHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 47889999985 99999999998854433 125667776654
No 15
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.57 E-value=40 Score=23.36 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCChhhhhhhHHHHHhhHH
Q 022333 226 TVLEKLCAVLNVNKRSVDRDLDVYRNLLS 254 (299)
Q Consensus 226 ~~l~~l~~~Lgls~ekv~KDL~lYrsnLe 254 (299)
..++.+|+.||||+.-.+.=..+|+...+
T Consensus 7 ~~I~~~~~~L~L~~~i~~~A~~i~~~~~~ 35 (95)
T d1vola1 7 KEITTMADRINLPRNKVDRTNNLFRQAYE 35 (95)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence 46899999999999988877777776543
No 16
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.41 E-value=27 Score=29.68 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=37.8
Q ss_pred ccchhhHHHHHHHhhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC
Q 022333 116 PVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQT 172 (299)
Q Consensus 116 plFALGlVTvFd~fm~GY~p--eed~~~IF~Alc~Alg~Dp~qyR~DA~~l~~~A~~~s 172 (299)
.|||||+ +.|..++ |.+| ..+...++..+++..-..|..+-.++..+....-...
T Consensus 220 DiwSlGv-ilyemlt-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~d 276 (350)
T d1rdqe_ 220 DWWALGV-LIYEMAA-GYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVD 276 (350)
T ss_dssp HHHHHHH-HHHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTCCHHHHHHHHHHSCSC
T ss_pred cccchhH-HHHHHHh-CCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHHHhhhC
Confidence 4999997 4666655 6666 3456678888888776667777777777776554443
Done!