BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022336
(299 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38812|GEP4_YEAST Phosphatidylglycerophosphatase GEP4, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GEP4 PE=1
SV=1
Length = 185
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 142 INVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLT 201
+N+ G ++ T+ + L P + VP + D K VV DKDN + P+
Sbjct: 1 MNISGTLN-TLRLLYNPSLCKPSLVVP--TFNDLPIPIHDSIKAVVLDKDNCIAFPHDDK 57
Query: 202 LWGPLSSSIEQCKSVFGHD-IAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPA 260
+W E +S + + + + SN+AG D D S+A+ LE K GI V+RH KKP
Sbjct: 58 IWPDYLQHWETLRSKYSNKALLIVSNTAG-SNSDKDYSQAKLLEDKTGIPVLRHSTKKP- 115
Query: 261 GTAEEIEKHF 270
G EI +F
Sbjct: 116 GCHNEILDYF 125
>sp|Q9Y7U3|GEP4_SCHPO Probable phosphatidylglycerophosphatase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gep4 PE=3 SV=2
Length = 209
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 10/132 (7%)
Query: 142 INVEGIVSSTVVFAKDRHLALPHVTVP-------DIRYIDWAELQR-RGFKGVVFDKDNT 193
IN+EGI + R + +PH T P +I Y + Q + +V DKDN
Sbjct: 3 INIEGIQAFCQTIRNPRRI-IPHATFPTFSQIPCNINYFLEQKFQVPVDIRALVLDKDNC 61
Query: 194 LTAPYSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI 252
+T P T+ I + ++++G ++ + SNS G + D A + K I V+
Sbjct: 62 ITLPNETTIAEAELKKIREFQNIYGEKNVILLSNSIGTRKLDPTGELAAHFQQKWNIPVV 121
Query: 253 RHRVKKPAGTAE 264
RH KP T E
Sbjct: 122 RHSKLKPLCTEE 133
>sp|A2T3S0|RDRP_ROTSH RNA-directed RNA polymerase OS=Rotavirus A (isolate Monkey/South
Africa/SA11-H96/1958
G3-P5B[2]-I2-R2-C5-M5-A5-N5-T5-E2-H5) PE=1 SV=1
Length = 1088
Score = 37.7 bits (86), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF HD + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHDDYLIAKELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|O37061|RDRP_ROTSP RNA-directed RNA polymerase OS=Rotavirus A (strain SA11-Patton
G3-Px[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx) PE=1 SV=2
Length = 1088
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF HD + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHDDYLIAKELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|P22678|RDRP_ROTS1 RNA-directed RNA polymerase OS=Rotavirus A (strain SA11-Both
G3-P5B[2]-I2-R2-C5-M5-A5-N2-T5-E2-H5) PE=3 SV=1
Length = 1088
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF HD + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHDDYLIAKELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYLRAIVPD 282
>sp|A7J3A2|RDRP_ROTYO RNA-directed RNA polymerase OS=Rotavirus A (strain
Human/Japan/YO/1977
G3-P1A[8]-I1-R1-C1-M1-Ax-Nx-Tx-E1-Hx) PE=3 SV=1
Length = 1088
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 188 FDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI 247
+D D PY L W +S+IE SVF H+ + + + Y N ++ A+ + +
Sbjct: 191 YDYDVMKDKPYYLVTWA--NSAIEMLMSVFSHEDYLIAKELIVLSYSNRSTLAKLVSSPM 248
Query: 248 GIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVD 281
I V + T EE+E F + + I+ D
Sbjct: 249 SILVALIDINGTFITNEELELEFSDKYVKAIVPD 282
>sp|A4ZCW2|RDRP_ROTH3 RNA-directed RNA polymerase OS=Rotavirus A (strain
Human/Japan/AU-1/1982
G3-P3[9]-I3-R3-C3-M3-A3-N3-T3-E3-H3) PE=3 SV=1
Length = 1088
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIILSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|B1NKT7|RDRP_ROTHT RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
Kingdom/ST3/1975 G4-P2A[6]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
PE=3 SV=1
Length = 1088
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIILSYSNRSTLAKLVSSPMSILVALIDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSDKYVKAIVPD 282
>sp|A4ZCW8|RDRP_ROTHW RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
States/Wa/1974 G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
PE=3 SV=1
Length = 1088
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIILSYSNRSTLAKLVSSPMSILVALIDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSDKYVKAIVPD 282
>sp|B1NKS9|RDRP_ROTHP RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
States/P/1974 G3-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) PE=3
SV=1
Length = 1088
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIILSYSNRSTLAKLVSSPMSILVALIDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSDKYVKAIVPD 282
>sp|B1NKR3|RDRP_ROTAD RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
States/D/1974 G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) PE=3
SV=1
Length = 1088
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIILSYSNRSTLAKLVSSPMSILVALIDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSDKYVKAIVPD 282
>sp|A3DSK5|RDRP_ROTHL RNA-directed RNA polymerase OS=Rotavirus A (strain
Human/Philippines/L26/1987
G12-P1B[4]-I2-R2-C2-M1/M2-A2-N1-T2-E2-H1) PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|B3F2X5|RDRP_ROTTU RNA-directed RNA polymerase OS=Rotavirus A (isolate Monkey/United
States/TUCH/2003 G3-Px[24]-I9-R3-C3-M3-A9-Nx-Tx-Ex-Hx)
PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVKAIVPD 282
>sp|Q9QNB3|RDRP_ROTHK RNA-directed RNA polymerase OS=Rotavirus A (strain
Human/Japan/KU/1995
G1-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1) PE=2 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIVLSYSNRSTLAKLVSSPMSILVALIDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSDKYVKAIVPD 282
>sp|A7J3A6|RDRP_ROTHD RNA-directed RNA polymerase OS=Rotavirus A (strain Human/United
States/DS-1/1976 G2-P1B[4]-I2-R2-C2-M2-A2-N2-T2-E2-H2)
PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|A7J398|RDRP_ROTBN RNA-directed RNA polymerase OS=Rotavirus A (strain Cow/United
States/NCDV-Lincoln/1969
G6-P6[1]-I2-R2-C2-M2-Ax-N2-T6-E2-Hx) PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|P17468|RDRP_ROTRF RNA-directed RNA polymerase OS=Rotavirus A (strain
Cow/France/RF/1975 G6-P6[1]-I2-R2-C2-M2-A3-N2-T6-E2-H3)
PE=1 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|A7J390|RDRP_ROTHS RNA-directed RNA polymerase OS=Rotavirus A (strain
Human/Japan/S2/1980
G2-P1B[4]-I2-R2-C2-M2-Ax-Nx-T2-E2-Hx) PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|B2BMQ6|RDRP_ROTH6 RNA-directed RNA polymerase OS=Rotavirus A (strain
Human/Indonesia/69M/1980
G8-P4[10]-I2-R2-C2-M2-A2-N2-T2-E2-H2) PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 188 FDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI 247
++ D PY L W +SSIE SVF H+ + + + Y N ++ A+ + +
Sbjct: 191 YEYDVMKDKPYYLVTWA--NSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLAKLVSSPM 248
Query: 248 GIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVD 281
I V + T EE+E F + + I+ D
Sbjct: 249 SILVALVDINGTFITNEELELEFSNKYVRAIVPD 282
>sp|B1NKU1|RDRP_ROTWI RNA-directed RNA polymerase OS=Rotavirus A (isolate Human/United
States/WI61/1983 G9-P1A[8]-I1-R1-C1-M1-A1-N1-T1-E1-H1)
PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIAKELIILSYSNRSTLAKLVSSPMSILVALIDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSDKYIKAIVPD 282
>sp|B1NKQ9|RDRP_ROTH7 RNA-directed RNA polymerase OS=Rotavirus A (isolate Human/United
Kingdom/A64/1987 G10-P11[14]-I2-R2-C2-M1-A3-N2-T6-E2-H3)
PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|Q3ZK55|RDRP_ROT41 RNA-directed RNA polymerase OS=Rotavirus A (isolate
Human/Belgium/B4106/2000
G3-P11[14]-I2-R2-C2-M3-A9-N2-T6-E5-H3) PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|B2BMF7|RDRP_ROTW3 RNA-directed RNA polymerase OS=Rotavirus A (strain Cow/United
States/WC3/1981 G6-P7[5]-I2-R2-C2-M2-A3-N2-T6-E2-H3)
PE=3 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|P21615|RDRP_ROTBU RNA-directed RNA polymerase OS=Rotavirus A (strain Cow/United
Kingdom/UK/1975 G6-P7[5]-I2-R2-C2-M2-A3-N2-T7-E2-H3)
PE=2 SV=1
Length = 1088
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +SSIE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLAKLVSSPMSILVALVDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSNKYVRAIVPD 282
>sp|Q85036|RDRP_ROTPY RNA-directed RNA polymerase OS=Rotavirus A (strain
Pig/Mexico/YM/1983 G11-P9[7]-I5-R1-C1-M1-A8-N1-T1-E1-H1)
PE=2 SV=1
Length = 1088
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256
PY L W +S+IE SVF H+ + + + Y N ++ A+ + + I V +
Sbjct: 200 PYYLVTWA--NSAIEMLMSVFSHEDYLIAKELIILSYSNRSTLAKLVSSPMSILVALIDI 257
Query: 257 KKPAGTAEEIEKHFGCQSSQLIMVD 281
T EE+E F + + I+ D
Sbjct: 258 NGTFITNEELELEFSDKYVKAIVPD 282
>sp|Q9UT05|TPP2_SCHPO Tripeptidyl-peptidase 2 homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tpp2 PE=1 SV=1
Length = 1274
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 119 DKYWTVLCTNMWWSQLK-AALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAE 177
D Y LC WWS L+ L +N GI VV K+ +L ++ ++ +D A
Sbjct: 786 DSYTLELCMAQWWSSLEPMVLDIDVNFHGI---KVVNGKEINL----ISSQGLKRVDCAS 838
Query: 178 LQRRGFKGVVFDKD 191
++R FK + KD
Sbjct: 839 IRRENFKPDITLKD 852
>sp|Q96AY3|FKB10_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP10 OS=Homo sapiens
GN=FKBP10 PE=1 SV=1
Length = 582
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 58 PTANSFSKEQEENLRKDNKLHPDQNHTFLDQFYSSADTNKLGNQDPES------QNQEQD 111
P AN F ++ +L KD ++ P++ TF+ S + QDPE QNQ+++
Sbjct: 501 PPANLF---EDMDLNKDGEVPPEEFSTFIKAQVSEGKGRLMPGQDPEKTIGDMFQNQDRN 557
Query: 112 EEPRYNKDK 120
++ + D+
Sbjct: 558 QDGKITVDE 566
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,023,764
Number of Sequences: 539616
Number of extensions: 4651099
Number of successful extensions: 12451
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 12428
Number of HSP's gapped (non-prelim): 52
length of query: 299
length of database: 191,569,459
effective HSP length: 117
effective length of query: 182
effective length of database: 128,434,387
effective search space: 23375058434
effective search space used: 23375058434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)