Query 022336
Match_columns 299
No_of_seqs 252 out of 1415
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09419 PGP_phosphatase: Mito 100.0 3.5E-37 7.6E-42 270.8 11.8 148 144-294 1-157 (168)
2 KOG2961 Predicted hydrolase (H 100.0 3.3E-34 7.2E-39 249.3 11.2 156 140-296 1-162 (190)
3 COG2179 Predicted hydrolase of 100.0 6.1E-29 1.3E-33 218.3 10.7 125 159-293 4-130 (175)
4 TIGR01668 YqeG_hyp_ppase HAD s 99.9 2.5E-21 5.4E-26 167.9 11.1 126 159-293 1-128 (170)
5 PRK06769 hypothetical protein; 99.7 2E-17 4.2E-22 143.9 8.0 112 181-293 2-129 (173)
6 TIGR01662 HAD-SF-IIIA HAD-supe 99.7 2.6E-16 5.6E-21 129.0 7.8 109 184-293 1-123 (132)
7 TIGR01656 Histidinol-ppas hist 99.6 7.7E-16 1.7E-20 129.9 8.6 109 184-293 1-137 (147)
8 TIGR00213 GmhB_yaeD D,D-heptos 99.6 7.3E-16 1.6E-20 133.5 8.5 108 184-292 2-141 (176)
9 PRK09484 3-deoxy-D-manno-octul 99.6 2.7E-15 5.9E-20 131.6 7.0 105 179-293 17-131 (183)
10 TIGR01664 DNA-3'-Pase DNA 3'-p 99.6 6.5E-15 1.4E-19 128.1 8.9 112 181-293 11-154 (166)
11 PRK08942 D,D-heptose 1,7-bisph 99.5 3E-14 6.5E-19 123.5 9.0 111 182-293 2-139 (181)
12 TIGR02726 phenyl_P_delta pheny 99.5 1.5E-14 3.2E-19 127.1 6.7 101 181-292 5-116 (169)
13 TIGR01261 hisB_Nterm histidino 99.5 3.2E-14 6.9E-19 123.5 8.0 109 184-293 2-139 (161)
14 COG0241 HisB Histidinol phosph 99.5 3.8E-14 8.2E-19 126.5 7.8 109 183-292 5-140 (181)
15 TIGR01670 YrbI-phosphatas 3-de 99.5 5.8E-14 1.2E-18 120.1 7.6 99 183-292 1-110 (154)
16 TIGR01681 HAD-SF-IIIC HAD-supe 99.5 7.1E-14 1.5E-18 116.3 7.3 99 184-291 1-125 (128)
17 PRK14988 GMP/IMP nucleotidase; 99.5 1.1E-13 2.3E-18 124.8 7.1 82 203-293 95-185 (224)
18 PRK13288 pyrophosphatase PpaX; 99.5 1.3E-13 2.9E-18 121.3 7.6 82 202-292 83-173 (214)
19 COG0546 Gph Predicted phosphat 99.5 1.9E-13 4.2E-18 122.4 8.6 84 201-293 89-181 (220)
20 PRK11587 putative phosphatase; 99.4 2E-13 4.3E-18 121.2 7.9 83 202-293 84-174 (218)
21 COG1778 Low specificity phosph 99.4 1.2E-13 2.5E-18 121.2 6.2 99 179-287 4-112 (170)
22 TIGR01428 HAD_type_II 2-haloal 99.4 2.4E-13 5.3E-18 118.1 7.9 84 201-293 92-184 (198)
23 PLN03243 haloacid dehalogenase 99.4 2.3E-13 5E-18 126.1 7.8 82 202-292 110-200 (260)
24 TIGR03351 PhnX-like phosphonat 99.4 4.1E-13 8.9E-18 118.3 8.2 84 201-293 87-182 (220)
25 PLN02770 haloacid dehalogenase 99.4 3.4E-13 7.3E-18 122.9 7.6 81 203-292 110-199 (248)
26 TIGR02253 CTE7 HAD superfamily 99.4 4.6E-13 1E-17 117.6 7.9 83 202-293 95-187 (221)
27 PRK13226 phosphoglycolate phos 99.4 4.3E-13 9.4E-18 120.5 7.8 82 202-292 96-186 (229)
28 PRK10826 2-deoxyglucose-6-phos 99.4 8E-13 1.7E-17 117.2 7.5 83 202-293 93-184 (222)
29 TIGR01686 FkbH FkbH-like domai 99.4 7E-13 1.5E-17 125.6 7.4 102 182-293 2-122 (320)
30 PLN02575 haloacid dehalogenase 99.4 1.7E-12 3.8E-17 127.3 8.7 83 202-293 217-308 (381)
31 PRK05446 imidazole glycerol-ph 99.4 2.6E-12 5.6E-17 125.0 9.5 109 183-292 2-139 (354)
32 cd01427 HAD_like Haloacid deha 99.3 3E-12 6.5E-17 100.4 7.9 99 185-292 1-131 (139)
33 TIGR00338 serB phosphoserine p 99.3 5.4E-12 1.2E-16 111.1 7.9 83 202-293 86-187 (219)
34 TIGR02009 PGMB-YQAB-SF beta-ph 99.3 3.5E-12 7.6E-17 108.6 6.4 83 200-293 87-178 (185)
35 PRK13222 phosphoglycolate phos 99.3 7.1E-12 1.5E-16 109.9 8.4 83 202-293 94-185 (226)
36 TIGR01663 PNK-3'Pase polynucle 99.3 8.8E-12 1.9E-16 126.7 9.9 111 181-292 166-302 (526)
37 TIGR01685 MDP-1 magnesium-depe 99.3 3.6E-12 7.8E-17 112.7 6.1 101 183-292 2-148 (174)
38 PLN02940 riboflavin kinase 99.3 7.4E-12 1.6E-16 122.0 6.7 82 202-292 94-185 (382)
39 PRK10725 fructose-1-P/6-phosph 99.3 9.9E-12 2.1E-16 106.6 6.7 67 218-292 102-177 (188)
40 PRK13223 phosphoglycolate phos 99.2 1.2E-11 2.6E-16 114.7 7.5 83 202-293 102-193 (272)
41 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.2 1.5E-11 3.3E-16 105.8 6.8 82 203-293 82-182 (201)
42 COG0637 Predicted phosphatase/ 99.2 1.7E-11 3.7E-16 110.7 7.2 82 202-292 87-177 (221)
43 PF08645 PNK3P: Polynucleotide 99.2 2.1E-11 4.6E-16 105.8 7.5 101 184-285 1-129 (159)
44 smart00577 CPDc catalytic doma 99.2 2.5E-11 5.5E-16 103.0 7.7 96 184-291 3-132 (148)
45 PRK10563 6-phosphogluconate ph 99.2 1.5E-11 3.2E-16 108.7 6.2 67 218-292 101-177 (221)
46 PRK13225 phosphoglycolate phos 99.2 3.9E-11 8.3E-16 112.2 8.4 81 202-292 143-230 (273)
47 PHA02530 pseT polynucleotide k 99.2 1.7E-10 3.6E-15 106.8 11.2 103 182-293 157-288 (300)
48 PTZ00445 p36-lilke protein; Pr 99.2 3.7E-11 8E-16 110.0 6.6 117 176-293 36-197 (219)
49 PRK10748 flavin mononucleotide 99.2 3.6E-11 7.7E-16 108.8 6.2 75 204-293 116-200 (238)
50 PLN02954 phosphoserine phospha 99.1 2.7E-10 5.8E-15 100.7 9.8 80 202-292 85-187 (224)
51 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.1 3.2E-10 7E-15 104.0 9.4 45 183-230 1-45 (249)
52 TIGR01672 AphA HAD superfamily 99.1 3E-10 6.4E-15 105.0 8.0 112 168-291 44-201 (237)
53 TIGR01454 AHBA_synth_RP 3-amin 99.1 2E-10 4.2E-15 100.6 6.5 85 199-292 73-166 (205)
54 TIGR01449 PGP_bact 2-phosphogl 99.0 2.8E-10 6.2E-15 99.2 6.3 84 200-292 84-176 (213)
55 PF13419 HAD_2: Haloacid dehal 99.0 1.9E-10 4.1E-15 94.7 4.4 87 198-293 74-169 (176)
56 PRK10444 UMP phosphatase; Prov 99.0 7.8E-10 1.7E-14 102.1 8.8 45 183-230 1-45 (248)
57 TIGR01422 phosphonatase phosph 99.0 3.2E-10 6.8E-15 102.7 5.9 86 199-293 97-193 (253)
58 PHA02597 30.2 hypothetical pro 99.0 6.6E-10 1.4E-14 96.7 7.6 80 202-293 75-164 (197)
59 PRK11133 serB phosphoserine ph 99.0 5.3E-10 1.2E-14 107.3 7.5 80 202-290 182-280 (322)
60 PLN02919 haloacid dehalogenase 99.0 6.1E-10 1.3E-14 121.2 8.4 82 203-293 163-254 (1057)
61 PRK09552 mtnX 2-hydroxy-3-keto 99.0 4.9E-10 1.1E-14 99.9 6.3 81 202-292 75-178 (219)
62 TIGR02252 DREG-2 REG-2-like, H 99.0 4.9E-10 1.1E-14 97.6 6.0 83 201-293 105-197 (203)
63 PRK13582 thrH phosphoserine ph 99.0 1E-09 2.2E-14 95.6 7.6 77 203-290 70-160 (205)
64 TIGR01509 HAD-SF-IA-v3 haloaci 99.0 7.3E-10 1.6E-14 93.6 6.3 84 200-293 84-176 (183)
65 TIGR01548 HAD-SF-IA-hyp1 haloa 99.0 8.8E-10 1.9E-14 96.3 6.6 82 202-292 107-196 (197)
66 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.0 1.6E-09 3.5E-14 99.9 8.6 46 183-230 1-49 (257)
67 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.0 1.8E-09 4E-14 97.9 8.8 98 181-287 6-108 (242)
68 TIGR01990 bPGM beta-phosphoglu 99.0 5.7E-10 1.2E-14 95.0 5.0 82 201-293 87-177 (185)
69 PRK09456 ?-D-glucose-1-phospha 98.9 7.9E-10 1.7E-14 96.9 4.8 84 201-293 84-177 (199)
70 PRK09449 dUMP phosphatase; Pro 98.9 1.6E-09 3.5E-14 95.7 6.2 84 200-293 94-188 (224)
71 PRK13478 phosphonoacetaldehyde 98.9 1.9E-09 4.1E-14 98.9 6.4 85 200-293 100-195 (267)
72 COG0647 NagD Predicted sugar p 98.9 5.9E-09 1.3E-13 98.3 8.8 48 181-231 6-53 (269)
73 PF00702 Hydrolase: haloacid d 98.9 3.1E-09 6.8E-14 91.5 6.4 103 180-291 104-212 (215)
74 PRK11009 aphA acid phosphatase 98.9 1.2E-08 2.6E-13 94.4 9.9 111 169-290 45-200 (237)
75 COG1011 Predicted hydrolase (H 98.9 4.7E-09 1E-13 92.1 6.8 85 199-293 97-191 (229)
76 TIGR02254 YjjG/YfnB HAD superf 98.8 4.9E-09 1.1E-13 91.7 6.4 84 200-293 96-190 (224)
77 TIGR02247 HAD-1A3-hyp Epoxide 98.8 1.9E-09 4.2E-14 94.6 3.6 88 199-293 92-188 (211)
78 PLN02779 haloacid dehalogenase 98.8 7.2E-09 1.6E-13 97.1 6.6 84 200-292 143-237 (286)
79 TIGR01488 HAD-SF-IB Haloacid D 98.8 9.8E-09 2.1E-13 86.8 6.4 82 202-292 74-176 (177)
80 TIGR01549 HAD-SF-IA-v1 haloaci 98.8 9.4E-09 2E-13 85.6 5.8 81 201-292 64-152 (154)
81 TIGR01489 DKMTPPase-SF 2,3-dik 98.8 1.4E-08 3E-13 86.3 6.5 79 201-293 72-181 (188)
82 TIGR03333 salvage_mtnX 2-hydro 98.8 8.3E-09 1.8E-13 91.9 5.1 84 200-292 69-174 (214)
83 TIGR01691 enolase-ppase 2,3-di 98.8 1.7E-08 3.6E-13 92.2 6.8 84 200-292 94-187 (220)
84 TIGR01993 Pyr-5-nucltdase pyri 98.7 1.2E-08 2.5E-13 88.0 5.2 83 199-293 82-177 (184)
85 TIGR01493 HAD-SF-IA-v2 Haloaci 98.7 8.2E-09 1.8E-13 87.7 3.4 78 199-292 88-174 (175)
86 PLN02811 hydrolase 98.7 5.3E-08 1.1E-12 86.8 6.8 84 200-292 77-175 (220)
87 COG0560 SerB Phosphoserine pho 98.6 1.3E-07 2.9E-12 85.7 8.1 78 200-286 76-172 (212)
88 PF13344 Hydrolase_6: Haloacid 98.6 2.1E-07 4.5E-12 75.1 8.3 89 186-283 1-89 (101)
89 TIGR01533 lipo_e_P4 5'-nucleot 98.6 2.1E-07 4.6E-12 87.6 9.5 98 182-289 74-203 (266)
90 TIGR01452 PGP_euk phosphoglyco 98.5 2.5E-07 5.4E-12 85.9 8.5 89 201-293 143-239 (279)
91 TIGR01452 PGP_euk phosphoglyco 98.5 4.5E-07 9.7E-12 84.3 10.0 94 182-283 1-94 (279)
92 PLN02645 phosphoglycolate phos 98.5 4.3E-07 9.4E-12 86.0 10.0 95 182-284 27-121 (311)
93 PRK08238 hypothetical protein; 98.5 2E-07 4.4E-12 94.1 8.2 79 202-291 73-156 (479)
94 TIGR01525 ATPase-IB_hvy heavy 98.5 3.2E-07 7E-12 93.3 9.4 105 177-292 358-465 (556)
95 PF12689 Acid_PPase: Acid Phos 98.5 3.9E-07 8.5E-12 80.7 8.3 96 183-286 3-136 (169)
96 TIGR01511 ATPase-IB1_Cu copper 98.5 3.8E-07 8.2E-12 93.2 9.2 102 178-291 380-483 (562)
97 TIGR02137 HSK-PSP phosphoserin 98.5 2.5E-07 5.3E-12 83.2 6.6 78 201-291 68-161 (203)
98 TIGR02251 HIF-SF_euk Dullard-l 98.5 1.8E-07 4E-12 81.1 5.5 97 184-290 2-128 (162)
99 PRK06698 bifunctional 5'-methy 98.5 2.4E-07 5.3E-12 91.9 6.1 81 201-293 330-419 (459)
100 KOG3040 Predicted sugar phosph 98.4 1.2E-06 2.5E-11 81.0 8.3 46 181-229 5-50 (262)
101 KOG3085 Predicted hydrolase (H 98.4 4.6E-07 1E-11 84.3 5.7 84 199-292 111-204 (237)
102 TIGR01512 ATPase-IB2_Cd heavy 98.3 1.4E-06 3E-11 88.5 7.9 104 177-291 336-442 (536)
103 TIGR01684 viral_ppase viral ph 98.2 2.1E-06 4.5E-11 82.4 6.9 109 132-250 71-186 (301)
104 PRK10671 copA copper exporting 98.2 6.2E-06 1.3E-10 87.8 10.1 105 176-291 623-729 (834)
105 KOG3109 Haloacid dehalogenase- 98.2 2.2E-06 4.7E-11 79.4 5.4 65 221-293 117-197 (244)
106 TIGR01487 SPP-like sucrose-pho 98.2 3.5E-06 7.7E-11 74.6 6.6 57 183-249 1-57 (215)
107 PRK01158 phosphoglycolate phos 98.2 3.6E-06 7.8E-11 74.5 6.5 57 183-249 3-59 (230)
108 PRK10530 pyridoxal phosphate ( 98.2 5.2E-06 1.1E-10 75.2 7.5 59 182-250 2-60 (272)
109 TIGR01490 HAD-SF-IB-hyp1 HAD-s 98.2 4.5E-06 9.8E-11 72.5 6.7 83 201-292 87-189 (202)
110 PRK00192 mannosyl-3-phosphogly 98.1 5.3E-06 1.2E-10 76.5 6.7 60 181-250 2-61 (273)
111 TIGR02244 HAD-IG-Ncltidse HAD 98.1 9.1E-06 2E-10 79.3 8.3 82 201-291 184-312 (343)
112 PRK10513 sugar phosphate phosp 98.1 6.2E-06 1.3E-10 75.0 6.5 58 182-249 2-59 (270)
113 PHA03398 viral phosphatase sup 98.1 6.2E-06 1.4E-10 79.2 6.8 108 132-250 73-188 (303)
114 PRK10976 putative hydrolase; P 98.1 7.2E-06 1.6E-10 74.6 6.7 58 183-250 2-59 (266)
115 TIGR01460 HAD-SF-IIA Haloacid 98.1 1.4E-05 3.1E-10 72.8 8.3 58 186-250 1-58 (236)
116 PRK15126 thiamin pyrimidine py 98.1 8.5E-06 1.8E-10 74.6 6.8 58 183-250 2-59 (272)
117 TIGR00685 T6PP trehalose-phosp 98.0 1.4E-05 3E-10 73.0 7.5 45 184-228 4-52 (244)
118 TIGR01689 EcbF-BcbF capsule bi 98.0 1.2E-05 2.5E-10 68.2 6.4 68 183-251 1-80 (126)
119 PLN02645 phosphoglycolate phos 98.0 2.1E-05 4.6E-10 74.6 8.8 86 205-293 174-267 (311)
120 COG0561 Cof Predicted hydrolas 98.0 1.1E-05 2.5E-10 73.3 6.7 59 182-250 2-60 (264)
121 KOG1615 Phosphoserine phosphat 98.0 2.8E-05 6.1E-10 71.2 9.0 81 199-291 86-190 (227)
122 KOG2914 Predicted haloacid-hal 98.0 1.8E-05 3.8E-10 73.1 7.8 90 202-293 93-188 (222)
123 TIGR01544 HAD-SF-IE haloacid d 98.0 2.2E-05 4.8E-10 74.6 8.5 86 199-293 119-230 (277)
124 TIGR01484 HAD-SF-IIB HAD-super 98.0 1.7E-05 3.8E-10 69.2 6.7 55 185-248 1-55 (204)
125 PRK03669 mannosyl-3-phosphogly 98.0 1.6E-05 3.6E-10 73.2 6.9 59 181-249 5-63 (271)
126 PRK11033 zntA zinc/cadmium/mer 97.9 3.7E-05 8.1E-10 81.3 9.7 100 176-288 541-642 (741)
127 TIGR02463 MPGP_rel mannosyl-3- 97.9 1.8E-05 3.8E-10 70.1 6.0 56 185-250 1-56 (221)
128 smart00775 LNS2 LNS2 domain. T 97.9 6.7E-05 1.5E-09 65.0 9.5 43 185-228 1-53 (157)
129 PF08282 Hydrolase_3: haloacid 97.9 1.8E-05 3.8E-10 68.8 5.9 55 186-250 1-55 (254)
130 PF03767 Acid_phosphat_B: HAD 97.9 2.4E-05 5.3E-10 71.8 6.7 100 181-289 70-207 (229)
131 TIGR01456 CECR5 HAD-superfamil 97.9 3.8E-05 8.2E-10 73.3 7.6 60 185-250 2-64 (321)
132 PF13242 Hydrolase_like: HAD-h 97.9 4.4E-06 9.5E-11 63.2 1.0 38 256-293 2-41 (75)
133 TIGR00099 Cof-subfamily Cof su 97.9 2.8E-05 6E-10 70.5 6.4 56 185-250 1-56 (256)
134 PRK12702 mannosyl-3-phosphogly 97.8 4.3E-05 9.2E-10 73.5 7.0 58 183-250 1-58 (302)
135 COG2217 ZntA Cation transport 97.8 9.7E-05 2.1E-09 78.3 10.2 104 172-286 506-611 (713)
136 TIGR01482 SPP-subfamily Sucros 97.8 3.6E-05 7.9E-10 67.8 5.8 53 186-248 1-53 (225)
137 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.8 5.4E-06 1.2E-10 75.3 0.3 85 203-292 140-232 (242)
138 PTZ00174 phosphomannomutase; P 97.8 5E-05 1.1E-09 69.4 6.3 46 181-228 3-48 (247)
139 TIGR01460 HAD-SF-IIA Haloacid 97.8 0.00013 2.8E-09 66.5 8.9 83 208-293 135-226 (236)
140 COG4996 Predicted phosphatase 97.8 0.00015 3.3E-09 63.0 8.6 93 184-285 1-127 (164)
141 PRK14502 bifunctional mannosyl 97.7 0.00041 8.9E-09 73.2 12.7 126 114-249 311-472 (694)
142 TIGR01497 kdpB K+-transporting 97.7 0.00023 5E-09 75.0 10.8 107 176-293 419-530 (675)
143 PRK01122 potassium-transportin 97.7 0.00031 6.7E-09 74.1 11.1 108 176-294 418-530 (679)
144 PLN02887 hydrolase family prot 97.7 9.5E-05 2.1E-09 76.7 7.1 63 177-249 302-364 (580)
145 TIGR01675 plant-AP plant acid 97.7 0.00026 5.7E-09 65.7 9.3 107 180-292 74-214 (229)
146 TIGR02461 osmo_MPG_phos mannos 97.7 9.7E-05 2.1E-09 67.1 6.3 54 185-249 1-54 (225)
147 TIGR02250 FCP1_euk FCP1-like p 97.6 0.00024 5.2E-09 61.7 8.1 94 180-285 3-138 (156)
148 PRK14010 potassium-transportin 97.6 0.00033 7.2E-09 73.8 10.2 107 177-294 415-526 (673)
149 PF06888 Put_Phosphatase: Puta 97.6 0.00033 7E-09 65.2 8.5 83 202-292 72-187 (234)
150 TIGR01486 HAD-SF-IIB-MPGP mann 97.6 0.00015 3.3E-09 66.0 6.3 56 185-250 1-56 (256)
151 PRK10187 trehalose-6-phosphate 97.6 0.00014 3E-09 67.8 5.9 58 183-248 14-75 (266)
152 TIGR01522 ATPase-IIA2_Ca golgi 97.5 0.00032 6.9E-09 75.6 9.4 102 177-289 497-632 (884)
153 TIGR01680 Veg_Stor_Prot vegeta 97.5 0.00051 1.1E-08 65.5 9.3 104 182-291 100-239 (275)
154 COG4359 Uncharacterized conser 97.4 0.0006 1.3E-08 62.2 8.4 77 202-292 74-177 (220)
155 KOG0207 Cation transport ATPas 97.4 0.0011 2.4E-08 71.4 10.6 100 176-286 696-797 (951)
156 PF03031 NIF: NLI interacting 97.3 0.00017 3.7E-09 61.1 3.3 101 184-294 1-128 (159)
157 KOG2882 p-Nitrophenyl phosphat 97.3 0.002 4.3E-08 62.2 10.3 46 181-229 20-65 (306)
158 KOG2882 p-Nitrophenyl phosphat 97.3 0.0008 1.7E-08 64.9 7.7 136 148-290 93-258 (306)
159 COG4087 Soluble P-type ATPase 97.2 0.0016 3.5E-08 56.6 8.3 92 184-288 15-107 (152)
160 PF12710 HAD: haloacid dehalog 97.2 0.00052 1.1E-08 58.5 5.1 75 204-289 92-190 (192)
161 TIGR01485 SPP_plant-cyano sucr 97.2 0.00046 1E-08 62.8 4.9 55 185-248 3-59 (249)
162 KOG1618 Predicted phosphatase 97.2 0.001 2.3E-08 64.9 7.4 89 184-284 36-130 (389)
163 TIGR01647 ATPase-IIIA_H plasma 97.1 0.0025 5.3E-08 67.8 10.0 108 176-294 410-557 (755)
164 PRK14501 putative bifunctional 97.1 0.0026 5.7E-08 67.1 9.9 63 178-248 487-553 (726)
165 TIGR01524 ATPase-IIIB_Mg magne 97.0 0.0049 1.1E-07 66.6 11.5 84 200-294 514-625 (867)
166 PLN02580 trehalose-phosphatase 97.0 0.0015 3.2E-08 64.9 6.9 63 177-249 113-179 (384)
167 TIGR02245 HAD_IIID1 HAD-superf 97.0 0.0041 8.9E-08 56.4 9.2 94 180-286 18-141 (195)
168 PRK10517 magnesium-transportin 96.9 0.0051 1.1E-07 66.9 10.7 108 177-295 508-661 (902)
169 KOG2134 Polynucleotide kinase 96.9 0.0024 5.3E-08 63.5 6.8 105 181-286 73-203 (422)
170 COG3769 Predicted hydrolase (H 96.9 0.0021 4.5E-08 60.3 5.9 59 181-250 5-63 (274)
171 COG3882 FkbH Predicted enzyme 96.8 0.0053 1.1E-07 62.8 8.9 98 180-286 219-339 (574)
172 TIGR01517 ATPase-IIB_Ca plasma 96.8 0.0077 1.7E-07 65.6 10.5 108 176-294 536-691 (941)
173 PLN03017 trehalose-phosphatase 96.8 0.0034 7.4E-08 62.0 7.0 55 181-245 109-167 (366)
174 PLN02423 phosphomannomutase 96.8 0.003 6.4E-08 58.2 6.1 46 180-228 3-49 (245)
175 PF08235 LNS2: LNS2 (Lipin/Ned 96.7 0.0051 1.1E-07 54.3 7.2 57 185-247 1-67 (157)
176 PLN02151 trehalose-phosphatase 96.7 0.0026 5.7E-08 62.6 5.8 55 182-246 97-155 (354)
177 PRK15122 magnesium-transportin 96.7 0.0085 1.8E-07 65.1 9.7 85 199-294 548-660 (903)
178 PRK10530 pyridoxal phosphate ( 96.5 0.0065 1.4E-07 55.0 6.6 81 207-292 143-233 (272)
179 TIGR01456 CECR5 HAD-superfamil 96.5 0.011 2.4E-07 56.5 8.5 72 221-292 186-282 (321)
180 TIGR02471 sucr_syn_bact_C sucr 96.5 0.0023 5E-08 57.5 3.4 53 185-249 1-53 (236)
181 COG2503 Predicted secreted aci 96.4 0.014 3.1E-07 55.2 8.4 96 183-286 79-205 (274)
182 TIGR01116 ATPase-IIA1_Ca sarco 96.4 0.011 2.3E-07 64.4 8.2 82 201-292 537-651 (917)
183 PLN02205 alpha,alpha-trehalose 96.3 0.0092 2E-07 64.7 7.2 60 169-228 578-643 (854)
184 TIGR01494 ATPase_P-type ATPase 96.3 0.027 5.8E-07 56.7 10.0 96 177-286 321-418 (499)
185 COG1877 OtsB Trehalose-6-phosp 96.3 0.0094 2E-07 56.6 6.2 63 179-249 14-80 (266)
186 PLN03063 alpha,alpha-trehalose 96.2 0.012 2.6E-07 63.2 7.5 70 172-249 492-572 (797)
187 PLN03064 alpha,alpha-trehalose 96.0 0.018 3.9E-07 63.0 7.7 64 178-249 586-662 (934)
188 PRK11590 hypothetical protein; 95.9 0.06 1.3E-06 48.0 9.3 77 201-286 95-188 (211)
189 KOG3120 Predicted haloacid deh 95.8 0.031 6.6E-07 52.5 7.2 80 202-290 85-198 (256)
190 PF02358 Trehalose_PPase: Treh 95.7 0.011 2.4E-07 53.4 4.0 42 187-228 1-46 (235)
191 PF05152 DUF705: Protein of un 95.5 0.037 7.9E-07 53.4 6.6 109 132-250 67-182 (297)
192 PF11019 DUF2608: Protein of u 95.3 0.15 3.2E-06 47.8 10.0 114 167-287 4-191 (252)
193 COG4229 Predicted enolase-phos 95.3 0.17 3.8E-06 46.5 10.0 131 130-291 49-194 (229)
194 KOG3189 Phosphomannomutase [Li 95.2 0.031 6.7E-07 51.9 4.9 47 179-228 7-53 (252)
195 TIGR01523 ATPase-IID_K-Na pota 94.7 0.087 1.9E-06 58.4 7.8 83 201-294 646-768 (1053)
196 TIGR01545 YfhB_g-proteo haloac 94.5 0.28 6E-06 44.3 9.2 77 201-286 94-187 (210)
197 TIGR02463 MPGP_rel mannosyl-3- 94.1 0.1 2.3E-06 46.1 5.5 31 256-287 178-208 (221)
198 TIGR01487 SPP-like sucrose-pho 94.0 0.072 1.6E-06 47.1 4.4 30 262-291 151-180 (215)
199 PRK00192 mannosyl-3-phosphogly 94.0 0.1 2.2E-06 48.2 5.4 31 261-291 193-224 (273)
200 TIGR01482 SPP-subfamily Sucros 93.9 0.066 1.4E-06 47.1 3.9 30 262-291 153-182 (225)
201 PRK01158 phosphoglycolate phos 93.6 0.09 1.9E-06 46.5 4.2 31 262-292 161-191 (230)
202 PLN02382 probable sucrose-phos 93.6 0.11 2.5E-06 51.7 5.4 56 184-248 10-67 (413)
203 PF05761 5_nucleotid: 5' nucle 93.5 0.11 2.5E-06 52.6 5.3 81 202-291 184-313 (448)
204 PF05116 S6PP: Sucrose-6F-phos 93.5 0.049 1.1E-06 50.3 2.4 56 184-249 3-58 (247)
205 COG3700 AphA Acid phosphatase 93.5 0.52 1.1E-05 43.4 8.8 130 154-292 24-202 (237)
206 TIGR01106 ATPase-IIC_X-K sodiu 93.3 0.28 6.1E-06 54.0 8.2 40 201-249 568-607 (997)
207 KOG2116 Protein involved in pl 93.3 0.27 5.8E-06 52.2 7.6 107 180-289 527-665 (738)
208 KOG4549 Magnesium-dependent ph 93.1 0.59 1.3E-05 40.6 8.1 93 184-284 19-132 (144)
209 COG2216 KdpB High-affinity K+ 92.6 0.69 1.5E-05 48.4 9.3 99 177-286 421-521 (681)
210 TIGR02252 DREG-2 REG-2-like, H 92.2 0.15 3.2E-06 44.3 3.5 12 184-195 1-12 (203)
211 COG0474 MgtA Cation transport 91.7 0.56 1.2E-05 51.4 7.8 86 199-294 545-661 (917)
212 TIGR02254 YjjG/YfnB HAD superf 91.5 0.2 4.2E-06 43.7 3.5 13 183-195 1-13 (224)
213 PF00702 Hydrolase: haloacid d 91.5 0.098 2.1E-06 44.9 1.5 19 183-202 1-19 (215)
214 TIGR01657 P-ATPase-V P-type AT 91.0 0.74 1.6E-05 51.1 8.0 40 201-249 656-695 (1054)
215 TIGR01422 phosphonatase phosph 90.3 0.32 7E-06 44.0 3.8 13 183-195 2-14 (253)
216 PRK09449 dUMP phosphatase; Pro 90.2 0.27 5.8E-06 43.4 3.1 14 182-195 2-15 (224)
217 TIGR02471 sucr_syn_bact_C sucr 90.1 0.16 3.5E-06 45.6 1.7 29 262-290 163-191 (236)
218 TIGR01485 SPP_plant-cyano sucr 89.9 1.1 2.4E-05 40.7 7.0 38 251-289 161-198 (249)
219 PRK13478 phosphonoacetaldehyde 89.5 0.37 8E-06 44.3 3.6 14 182-195 3-16 (267)
220 PF08282 Hydrolase_3: haloacid 89.2 0.33 7E-06 42.1 2.8 157 114-287 25-215 (254)
221 TIGR01484 HAD-SF-IIB HAD-super 88.9 0.17 3.7E-06 44.1 0.8 30 262-291 167-196 (204)
222 PRK10976 putative hydrolase; P 88.8 0.25 5.5E-06 44.9 2.0 27 261-287 193-219 (266)
223 PRK10513 sugar phosphate phosp 88.5 0.29 6.3E-06 44.5 2.1 27 261-287 199-225 (270)
224 PF06437 ISN1: IMP-specific 5' 88.5 0.77 1.7E-05 46.1 5.2 46 182-228 146-192 (408)
225 PLN02779 haloacid dehalogenase 88.1 0.6 1.3E-05 44.0 4.1 15 181-195 38-52 (286)
226 PF06941 NT5C: 5' nucleotidase 88.0 1.6 3.4E-05 38.3 6.4 45 202-248 74-119 (191)
227 TIGR00099 Cof-subfamily Cof su 87.3 0.25 5.4E-06 44.8 1.0 31 261-291 191-221 (256)
228 PRK15126 thiamin pyrimidine py 87.0 0.36 7.8E-06 44.2 1.8 27 261-287 191-217 (272)
229 COG0561 Cof Predicted hydrolas 86.5 1.1 2.4E-05 40.7 4.8 26 262-287 193-218 (264)
230 TIGR01548 HAD-SF-IA-hyp1 haloa 86.4 0.67 1.5E-05 40.4 3.1 11 185-195 2-12 (197)
231 TIGR01993 Pyr-5-nucltdase pyri 86.4 0.64 1.4E-05 39.9 2.9 11 185-195 2-12 (184)
232 TIGR01990 bPGM beta-phosphoglu 86.0 0.6 1.3E-05 39.5 2.6 11 185-195 1-11 (185)
233 PRK11590 hypothetical protein; 86.0 0.67 1.5E-05 41.3 3.0 13 183-195 6-18 (211)
234 PF05116 S6PP: Sucrose-6F-phos 85.9 2.2 4.8E-05 39.4 6.4 36 250-286 158-193 (247)
235 COG4850 Uncharacterized conser 84.8 4.5 9.8E-05 40.2 8.2 47 180-228 159-223 (373)
236 KOG0202 Ca2+ transporting ATPa 84.7 3.1 6.7E-05 45.7 7.6 75 202-286 585-689 (972)
237 TIGR01549 HAD-SF-IA-v1 haloaci 82.5 0.83 1.8E-05 37.8 1.9 11 185-195 1-11 (154)
238 TIGR02247 HAD-1A3-hyp Epoxide 82.4 0.73 1.6E-05 40.3 1.6 14 183-196 2-15 (211)
239 TIGR01652 ATPase-Plipid phosph 81.6 5.5 0.00012 44.3 8.4 28 200-228 630-657 (1057)
240 PRK03669 mannosyl-3-phosphogly 80.4 1.1 2.4E-05 41.3 2.1 26 262-287 191-219 (271)
241 TIGR01493 HAD-SF-IA-v2 Haloaci 80.2 0.59 1.3E-05 39.5 0.2 11 185-195 1-11 (175)
242 PRK06698 bifunctional 5'-methy 79.5 0.92 2E-05 45.3 1.4 14 182-195 240-253 (459)
243 TIGR01449 PGP_bact 2-phosphogl 79.3 1.3 2.9E-05 38.4 2.1 10 186-195 1-10 (213)
244 TIGR01486 HAD-SF-IIB-MPGP mann 79.2 1.4 3.1E-05 40.1 2.4 27 262-288 180-208 (256)
245 COG1011 Predicted hydrolase (H 77.4 1.7 3.7E-05 38.0 2.2 16 181-196 2-17 (229)
246 KOG1605 TFIIF-interacting CTD 76.7 0.75 1.6E-05 43.8 -0.2 105 170-286 76-213 (262)
247 COG5083 SMP2 Uncharacterized p 76.6 3.5 7.6E-05 42.5 4.5 108 180-289 372-509 (580)
248 PLN02887 hydrolase family prot 74.8 1.8 3.9E-05 45.4 2.0 27 261-287 510-536 (580)
249 cd06287 PBP1_LacI_like_8 Ligan 74.6 26 0.00057 31.7 9.4 21 263-283 193-215 (269)
250 COG0731 Fe-S oxidoreductases [ 73.8 7.4 0.00016 37.9 5.7 35 193-228 84-119 (296)
251 TIGR01545 YfhB_g-proteo haloac 73.6 2.3 5E-05 38.3 2.2 16 182-197 4-19 (210)
252 cd06413 GH25_muramidase_1 Unch 72.9 17 0.00038 32.0 7.5 63 172-248 14-81 (191)
253 PRK10187 trehalose-6-phosphate 72.7 3.2 7E-05 38.7 3.0 25 262-286 178-202 (266)
254 PRK09417 mogA molybdenum cofac 71.9 15 0.00032 33.4 6.9 62 176-243 30-91 (193)
255 TIGR02932 vnfK_nitrog V-contai 71.6 13 0.00029 37.7 7.3 68 177-253 187-259 (457)
256 TIGR01454 AHBA_synth_RP 3-amin 70.9 1.6 3.4E-05 38.1 0.4 10 186-195 1-10 (205)
257 TIGR01509 HAD-SF-IA-v3 haloaci 69.5 2 4.4E-05 35.9 0.8 13 185-197 1-13 (183)
258 PF12710 HAD: haloacid dehalog 68.8 2.1 4.5E-05 36.2 0.7 34 247-281 104-137 (192)
259 PRK00856 pyrB aspartate carbam 67.4 91 0.002 30.1 11.7 99 173-285 61-167 (305)
260 PF02593 dTMP_synthase: Thymid 66.9 31 0.00066 32.2 8.0 110 162-286 31-146 (217)
261 PF04312 DUF460: Protein of un 66.4 42 0.00091 29.4 8.2 58 185-250 45-102 (138)
262 cd06285 PBP1_LacI_like_7 Ligan 64.7 99 0.0022 27.2 11.3 52 175-229 71-125 (265)
263 TIGR01163 rpe ribulose-phospha 63.8 48 0.001 28.9 8.4 92 168-273 3-106 (210)
264 PRK03515 ornithine carbamoyltr 62.9 1.1E+02 0.0023 30.2 11.3 96 173-283 61-165 (336)
265 PF14597 Lactamase_B_5: Metall 62.3 12 0.00025 34.6 4.2 44 204-254 41-84 (199)
266 TIGR01490 HAD-SF-IB-hyp1 HAD-s 62.0 3.3 7.2E-05 35.7 0.7 14 185-198 1-14 (202)
267 KOG2470 Similar to IMP-GMP spe 60.9 25 0.00054 35.7 6.5 25 203-228 242-266 (510)
268 PF13419 HAD_2: Haloacid dehal 60.7 3.9 8.4E-05 33.2 0.8 10 186-195 1-10 (176)
269 TIGR00676 fadh2 5,10-methylene 60.5 40 0.00087 31.7 7.7 87 196-285 7-99 (272)
270 TIGR02461 osmo_MPG_phos mannos 60.4 7 0.00015 35.5 2.5 28 262-289 185-214 (225)
271 cd06419 GH25_muramidase_2 Unch 60.3 43 0.00093 30.1 7.5 65 172-248 19-86 (190)
272 cd03017 PRX_BCP Peroxiredoxin 59.8 89 0.0019 25.0 9.0 96 162-274 3-100 (140)
273 TIGR02109 PQQ_syn_pqqE coenzym 59.1 54 0.0012 31.5 8.4 58 179-250 50-107 (358)
274 PRK12562 ornithine carbamoyltr 59.0 1.5E+02 0.0033 29.2 11.6 96 173-283 61-165 (334)
275 PLN02382 probable sucrose-phos 58.9 6.7 0.00015 39.3 2.3 26 261-286 178-206 (413)
276 PF06189 5-nucleotidase: 5'-nu 58.8 28 0.00061 33.5 6.3 97 181-292 120-250 (264)
277 PRK01713 ornithine carbamoyltr 58.7 1.3E+02 0.0028 29.5 11.1 98 173-285 62-167 (334)
278 cd01973 Nitrogenase_VFe_beta_l 58.4 30 0.00065 35.1 6.9 68 177-253 183-255 (454)
279 COG4030 Uncharacterized protei 58.2 35 0.00076 32.8 6.8 26 200-227 82-107 (315)
280 PRK09456 ?-D-glucose-1-phospha 58.0 5.5 0.00012 34.8 1.4 13 184-196 1-13 (199)
281 KOG3085 Predicted hydrolase (H 57.8 11 0.00024 35.6 3.4 15 181-195 5-19 (237)
282 cd01545 PBP1_SalR Ligand-bindi 57.5 1.2E+02 0.0026 26.5 9.8 54 175-229 73-129 (270)
283 cd06297 PBP1_LacI_like_12 Liga 56.8 1.1E+02 0.0024 27.2 9.7 52 176-228 72-123 (269)
284 cd07041 STAS_RsbR_RsbS_like Su 56.8 36 0.00079 26.6 5.8 58 180-250 38-95 (109)
285 PLN02229 alpha-galactosidase 55.7 1E+02 0.0023 31.5 10.1 101 129-253 65-181 (427)
286 cd06595 GH31_xylosidase_XylS-l 55.4 27 0.00058 33.1 5.6 26 201-227 71-96 (292)
287 KOG2630 Enolase-phosphatase E- 55.3 34 0.00074 32.6 6.2 76 201-286 123-209 (254)
288 TIGR02417 fruct_sucro_rep D-fr 54.9 79 0.0017 29.0 8.6 53 175-228 133-188 (327)
289 PRK02102 ornithine carbamoyltr 54.9 1.6E+02 0.0035 29.0 11.0 92 177-283 67-164 (331)
290 PRK13111 trpA tryptophan synth 54.8 94 0.002 29.3 9.1 92 135-246 64-164 (258)
291 cd03018 PRX_AhpE_like Peroxire 54.1 1.2E+02 0.0026 24.6 9.2 100 160-273 5-106 (149)
292 cd03466 Nitrogenase_NifN_2 Nit 53.7 44 0.00096 33.4 7.1 70 176-253 175-251 (429)
293 COG1366 SpoIIAA Anti-anti-sigm 53.6 42 0.0009 27.1 5.8 63 177-252 38-100 (117)
294 COG1102 Cmk Cytidylate kinase 52.8 24 0.00052 32.1 4.5 30 221-254 2-31 (179)
295 PRK13762 tRNA-modifying enzyme 52.7 43 0.00093 32.5 6.7 50 172-228 118-168 (322)
296 cd06271 PBP1_AglR_RafR_like Li 52.5 1.6E+02 0.0034 25.6 10.2 53 175-228 75-130 (268)
297 cd06298 PBP1_CcpA_like Ligand- 52.5 1.6E+02 0.0034 25.7 9.7 52 176-228 72-126 (268)
298 PF09547 Spore_IV_A: Stage IV 51.9 51 0.0011 34.2 7.2 83 171-255 125-216 (492)
299 cd06299 PBP1_LacI_like_13 Liga 51.7 1.6E+02 0.0036 25.6 10.7 53 175-228 71-126 (265)
300 PRK04284 ornithine carbamoyltr 51.6 2E+02 0.0043 28.2 11.1 96 173-283 61-164 (332)
301 cd06525 GH25_Lyc-like Lyc mura 51.5 41 0.0009 29.4 5.8 68 172-248 11-78 (184)
302 PRK08883 ribulose-phosphate 3- 51.2 95 0.0021 28.5 8.4 93 168-272 4-107 (220)
303 PLN02591 tryptophan synthase 50.9 1E+02 0.0022 29.1 8.6 94 134-247 53-154 (250)
304 cd06277 PBP1_LacI_like_1 Ligan 50.7 1.1E+02 0.0024 26.9 8.5 53 175-228 73-128 (268)
305 TIGR00658 orni_carb_tr ornithi 50.2 2.4E+02 0.0053 27.1 11.5 96 173-283 55-157 (304)
306 PF05822 UMPH-1: Pyrimidine 5' 50.2 42 0.00092 31.8 6.0 82 200-290 89-195 (246)
307 PRK10703 DNA-binding transcrip 50.1 1.6E+02 0.0036 27.1 9.9 53 176-229 132-189 (341)
308 cd00537 MTHFR Methylenetetrahy 49.6 1E+02 0.0022 28.7 8.4 91 195-286 6-100 (274)
309 cd06270 PBP1_GalS_like Ligand 49.3 1.8E+02 0.004 25.5 9.8 53 175-228 71-126 (268)
310 PRK02255 putrescine carbamoylt 49.1 2.5E+02 0.0053 27.7 11.3 96 173-283 58-163 (338)
311 PRK00779 ornithine carbamoyltr 48.9 2.5E+02 0.0054 27.1 11.2 96 173-283 59-161 (304)
312 TIGR02886 spore_II_AA anti-sig 48.7 93 0.002 24.1 7.0 57 181-250 37-93 (106)
313 PRK05301 pyrroloquinoline quin 48.6 1.1E+02 0.0023 29.8 8.7 58 179-250 59-116 (378)
314 PF08353 DUF1727: Domain of un 48.5 68 0.0015 26.7 6.4 46 143-188 4-59 (113)
315 cd07043 STAS_anti-anti-sigma_f 48.4 97 0.0021 23.0 6.8 56 182-250 37-92 (99)
316 PF00578 AhpC-TSA: AhpC/TSA fa 47.8 17 0.00036 28.5 2.5 93 162-273 5-101 (124)
317 TIGR03278 methan_mark_10 putat 47.8 73 0.0016 32.2 7.6 52 193-250 78-130 (404)
318 cd06292 PBP1_LacI_like_10 Liga 47.4 1.9E+02 0.004 25.5 9.5 53 175-228 76-132 (273)
319 PF04028 DUF374: Domain of unk 46.7 1.4E+02 0.0029 23.2 7.4 56 221-284 13-69 (74)
320 PF08814 XisH: XisH protein; 46.5 5.7 0.00012 34.6 -0.4 59 132-191 69-129 (135)
321 PRK08745 ribulose-phosphate 3- 46.1 1.3E+02 0.0028 27.8 8.5 95 167-273 7-112 (223)
322 TIGR00677 fadh2_euk methylenet 46.0 1.1E+02 0.0025 29.0 8.3 85 197-284 9-99 (281)
323 COG0521 MoaB Molybdopterin bio 46.0 1.5E+02 0.0032 26.8 8.4 61 176-245 34-94 (169)
324 cd06293 PBP1_LacI_like_11 Liga 45.6 2.1E+02 0.0046 25.1 10.3 50 176-228 72-126 (269)
325 PF00072 Response_reg: Respons 45.4 1.3E+02 0.0028 22.6 8.0 61 176-253 37-98 (112)
326 TIGR02931 anfK_nitrog Fe-only 45.1 63 0.0014 32.8 6.8 68 177-253 190-262 (461)
327 cd04724 Tryptophan_synthase_al 44.9 1.9E+02 0.004 26.7 9.3 94 135-249 52-155 (242)
328 cd06522 GH25_AtlA-like AtlA is 44.8 48 0.001 29.3 5.3 49 170-224 13-61 (192)
329 PF06437 ISN1: IMP-specific 5' 44.7 1.2E+02 0.0026 31.0 8.4 27 259-285 350-380 (408)
330 TIGR02708 L_lactate_ox L-lacta 44.7 3.4E+02 0.0073 27.2 12.1 30 164-193 138-170 (367)
331 TIGR03595 Obg_CgtA_exten Obg f 44.6 20 0.00043 27.3 2.4 25 262-286 44-68 (69)
332 cd04117 Rab15 Rab15 subfamily. 44.1 1.2E+02 0.0026 25.1 7.3 68 185-259 77-147 (161)
333 TIGR00377 ant_ant_sig anti-ant 43.6 1.1E+02 0.0024 23.6 6.6 57 181-250 41-97 (108)
334 cd06592 GH31_glucosidase_KIAA1 43.3 52 0.0011 31.3 5.5 41 184-227 47-92 (303)
335 PLN02342 ornithine carbamoyltr 43.0 3.5E+02 0.0076 26.9 11.6 98 173-285 101-205 (348)
336 PF00834 Ribul_P_3_epim: Ribul 42.9 55 0.0012 29.8 5.4 95 168-274 4-108 (201)
337 TIGR01691 enolase-ppase 2,3-di 42.8 17 0.00036 33.4 2.1 32 183-214 1-34 (220)
338 TIGR02405 trehalos_R_Ecol treh 42.4 2E+02 0.0043 26.4 9.1 50 174-226 128-180 (311)
339 cd06524 GH25_YegX-like YegX is 42.4 1.1E+02 0.0024 26.8 7.2 67 172-247 11-81 (194)
340 cd07018 S49_SppA_67K_type Sign 42.1 46 0.001 30.1 4.8 44 181-228 45-88 (222)
341 PRK14805 ornithine carbamoyltr 41.8 3.3E+02 0.0072 26.3 11.1 96 173-283 54-156 (302)
342 COG1609 PurR Transcriptional r 41.7 2.1E+02 0.0045 27.4 9.5 54 174-228 129-185 (333)
343 cd04121 Rab40 Rab40 subfamily. 41.5 1.3E+02 0.0029 26.4 7.5 54 204-257 95-150 (189)
344 PF04405 ScdA_N: Domain of Unk 41.5 14 0.00031 27.2 1.1 36 238-277 13-48 (56)
345 cd06296 PBP1_CatR_like Ligand- 41.1 2E+02 0.0044 25.1 8.6 54 175-229 71-128 (270)
346 cd01854 YjeQ_engC YjeQ/EngC. 40.9 1.5E+02 0.0033 27.9 8.2 95 183-282 72-169 (287)
347 cd04138 H_N_K_Ras_like H-Ras/N 40.9 93 0.002 24.8 6.0 53 205-257 90-145 (162)
348 cd04127 Rab27A Rab27a subfamil 40.6 1.3E+02 0.0029 24.9 7.1 56 204-259 103-162 (180)
349 cd04112 Rab26 Rab26 subfamily. 40.4 1.6E+02 0.0035 25.2 7.8 70 183-259 76-148 (191)
350 KOG2469 IMP-GMP specific 5'-nu 40.4 53 0.0011 33.6 5.2 27 263-289 293-320 (424)
351 COG1225 Bcp Peroxiredoxin [Pos 40.1 1.5E+02 0.0033 26.3 7.5 95 161-272 9-105 (157)
352 cd02970 PRX_like2 Peroxiredoxi 40.0 91 0.002 25.0 5.8 78 162-250 2-81 (149)
353 TIGR00705 SppA_67K signal pept 39.9 18 0.00038 38.1 1.9 46 180-229 91-137 (584)
354 TIGR02495 NrdG2 anaerobic ribo 39.8 1.6E+02 0.0035 25.3 7.7 33 194-228 68-100 (191)
355 KOG1123 RNA polymerase II tran 39.7 2.2E+02 0.0049 30.5 9.7 116 168-296 474-614 (776)
356 cd01861 Rab6 Rab6 subfamily. 39.7 1.6E+02 0.0035 23.7 7.3 72 181-259 73-147 (161)
357 cd04176 Rap2 Rap2 subgroup. T 39.5 2.1E+02 0.0045 23.2 8.0 56 204-259 89-148 (163)
358 PRK14129 heat shock protein Hs 39.5 17 0.00037 30.4 1.4 45 180-228 16-60 (105)
359 PF09269 DUF1967: Domain of un 39.4 20 0.00044 27.2 1.7 24 262-285 44-67 (69)
360 cd01866 Rab2 Rab2 subfamily. 38.8 1.3E+02 0.0028 24.9 6.8 57 204-260 93-152 (168)
361 cd06278 PBP1_LacI_like_2 Ligan 38.7 2.4E+02 0.0052 24.5 8.7 54 175-229 70-126 (266)
362 KOG3107 Predicted haloacid deh 38.3 35 0.00077 34.8 3.6 66 221-293 373-443 (468)
363 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 38.1 1.8E+02 0.0038 23.8 7.4 58 203-260 90-150 (166)
364 PF02606 LpxK: Tetraacyldisacc 38.0 1.7E+02 0.0038 28.5 8.3 96 183-286 33-140 (326)
365 KOG2832 TFIIF-interacting CTD 38.0 82 0.0018 31.9 6.1 90 184-285 190-294 (393)
366 PF06006 DUF905: Bacterial pro 38.0 31 0.00068 26.9 2.5 40 180-220 30-69 (70)
367 PF01041 DegT_DnrJ_EryC1: DegT 37.9 1.3E+02 0.0027 29.0 7.3 95 144-254 50-146 (363)
368 PLN02177 glycerol-3-phosphate 37.9 16 0.00035 37.8 1.2 20 184-203 23-42 (497)
369 PLN02808 alpha-galactosidase 37.8 1E+02 0.0022 31.1 6.8 105 124-253 29-151 (386)
370 cd03027 GRX_DEP Glutaredoxin ( 37.8 1.6E+02 0.0034 21.4 7.5 49 236-284 13-61 (73)
371 cd01965 Nitrogenase_MoFe_beta_ 37.5 1.6E+02 0.0034 29.3 8.1 68 177-254 177-251 (428)
372 cd06412 GH25_CH-type CH-type ( 37.5 86 0.0019 27.8 5.7 66 172-247 12-79 (199)
373 PRK09722 allulose-6-phosphate 37.3 2.3E+02 0.0049 26.5 8.6 93 168-273 7-110 (229)
374 COG1433 Uncharacterized conser 37.2 2E+02 0.0044 24.4 7.6 53 204-270 52-104 (121)
375 COG0036 Rpe Pentose-5-phosphat 37.2 1.7E+02 0.0036 27.5 7.7 60 166-228 6-73 (220)
376 TIGR00262 trpA tryptophan synt 37.1 2.1E+02 0.0045 26.8 8.5 96 134-247 61-163 (256)
377 cd04140 ARHI_like ARHI subfami 37.1 1.8E+02 0.0038 24.0 7.3 71 182-259 74-150 (165)
378 cd01966 Nitrogenase_NifN_1 Nit 37.1 92 0.002 31.2 6.4 68 177-254 179-252 (417)
379 KOG0541 Alkyl hydroperoxide re 37.0 1.2E+02 0.0026 27.5 6.3 67 173-249 35-102 (171)
380 PRK11572 copper homeostasis pr 36.8 3.8E+02 0.0082 25.5 10.3 16 173-188 77-92 (248)
381 cd06598 GH31_transferase_CtsZ 36.8 83 0.0018 30.1 5.9 25 201-226 67-91 (317)
382 PF01183 Glyco_hydro_25: Glyco 36.7 64 0.0014 27.9 4.7 69 172-247 9-77 (181)
383 cd00429 RPE Ribulose-5-phospha 36.4 2.6E+02 0.0057 24.1 8.5 77 167-255 3-88 (211)
384 cd06591 GH31_xylosidase_XylS X 36.4 83 0.0018 30.2 5.8 24 202-226 64-87 (319)
385 PRK05301 pyrroloquinoline quin 36.3 1.2E+02 0.0027 29.3 7.1 72 175-252 107-186 (378)
386 cd06281 PBP1_LacI_like_5 Ligan 36.2 3E+02 0.0065 24.2 10.7 51 176-228 73-126 (269)
387 PF06014 DUF910: Bacterial pro 35.8 10 0.00022 29.0 -0.4 21 263-287 7-27 (62)
388 PRK08005 epimerase; Validated 35.8 2.1E+02 0.0045 26.4 8.0 94 168-273 5-108 (210)
389 PF01297 TroA: Periplasmic sol 35.6 1.9E+02 0.004 26.3 7.8 65 177-254 163-228 (256)
390 TIGR02836 spore_IV_A stage IV 35.3 1.7E+02 0.0037 30.6 8.0 68 185-254 148-215 (492)
391 cd05014 SIS_Kpsf KpsF-like pro 34.9 67 0.0015 25.6 4.2 40 189-229 46-85 (128)
392 cd06294 PBP1_ycjW_transcriptio 34.9 3.1E+02 0.0067 23.9 9.5 53 175-229 76-133 (270)
393 cd01974 Nitrogenase_MoFe_beta 34.5 2.2E+02 0.0047 28.5 8.6 18 237-254 238-255 (435)
394 PRK14476 nitrogenase molybdenu 34.0 1.1E+02 0.0023 31.1 6.4 68 177-254 190-263 (455)
395 PF07213 DAP10: DAP10 membrane 33.9 20 0.00044 28.6 1.0 19 5-23 15-33 (79)
396 cd04141 Rit_Rin_Ric Rit/Rin/Ri 33.6 1.3E+02 0.0028 25.4 6.0 41 218-258 107-148 (172)
397 PRK09432 metF 5,10-methylenete 33.4 2.2E+02 0.0047 27.4 8.1 87 196-283 31-121 (296)
398 PRK10671 copA copper exporting 33.3 24 0.00052 38.3 1.7 19 181-200 515-533 (834)
399 cd01865 Rab3 Rab3 subfamily. 32.9 2.2E+02 0.0048 23.4 7.2 55 204-258 90-147 (165)
400 TIGR01285 nifN nitrogenase mol 32.9 1.2E+02 0.0026 30.6 6.4 68 177-254 189-263 (432)
401 COG3785 Uncharacterized conser 32.7 24 0.00051 29.8 1.2 44 181-227 26-69 (116)
402 PRK09526 lacI lac repressor; R 32.7 3.5E+02 0.0076 24.9 9.2 47 181-229 143-192 (342)
403 PRK11658 UDP-4-amino-4-deoxy-L 32.6 2.2E+02 0.0048 27.5 8.2 91 145-252 59-152 (379)
404 cd03015 PRX_Typ2cys Peroxiredo 32.6 3.1E+02 0.0068 23.3 9.5 62 162-228 5-73 (173)
405 cd04145 M_R_Ras_like M-Ras/R-R 32.5 2.2E+02 0.0047 22.9 7.0 72 181-259 74-149 (164)
406 TIGR02666 moaA molybdenum cofa 32.3 2.4E+02 0.0053 26.8 8.2 43 179-228 56-99 (334)
407 cd04113 Rab4 Rab4 subfamily. 32.3 2.4E+02 0.0053 22.8 7.3 55 205-259 90-147 (161)
408 cd00599 GH25_muramidase Endo-N 32.2 2.6E+02 0.0056 24.0 7.7 68 172-248 11-78 (186)
409 PF11181 YflT: Heat induced st 32.1 1.2E+02 0.0027 24.2 5.3 78 204-295 10-102 (103)
410 PRK11706 TDP-4-oxo-6-deoxy-D-g 32.0 1.9E+02 0.0041 27.9 7.5 66 176-253 86-151 (375)
411 KOG1970 Checkpoint RAD17-RFC c 32.0 88 0.0019 33.5 5.5 45 204-252 92-139 (634)
412 TIGR01481 ccpA catabolite cont 32.0 4E+02 0.0087 24.3 10.3 51 176-227 132-185 (329)
413 PF04413 Glycos_transf_N: 3-De 31.9 1E+02 0.0022 27.4 5.3 80 199-287 103-184 (186)
414 cd08185 Fe-ADH1 Iron-containin 31.7 1.9E+02 0.0041 28.3 7.5 84 198-282 5-92 (380)
415 PLN02331 phosphoribosylglycina 31.5 1.3E+02 0.0028 27.5 6.0 52 220-281 29-86 (207)
416 cd01860 Rab5_related Rab5-rela 31.5 2.6E+02 0.0056 22.5 7.3 56 204-259 90-148 (163)
417 PLN03231 putative alpha-galact 31.4 71 0.0015 31.9 4.5 70 136-227 9-108 (357)
418 PRK12289 GTPase RsgA; Reviewed 31.3 2.3E+02 0.005 28.0 8.1 69 206-282 109-180 (352)
419 KOG4388 Hormone-sensitive lipa 31.2 2.3E+02 0.0051 30.9 8.3 56 109-179 275-330 (880)
420 cd06416 GH25_Lys1-like Lys-1 i 31.0 87 0.0019 27.6 4.6 45 172-222 12-56 (196)
421 cd04106 Rab23_lke Rab23-like s 31.0 2.2E+02 0.0047 22.9 6.8 55 204-258 91-147 (162)
422 PRK00098 GTPase RsgA; Reviewed 31.0 3.1E+02 0.0068 26.0 8.7 69 207-282 101-172 (298)
423 PF02421 FeoB_N: Ferrous iron 30.8 69 0.0015 28.1 3.9 82 176-267 72-153 (156)
424 PF00532 Peripla_BP_1: Peripla 30.7 2.1E+02 0.0045 26.5 7.3 92 176-286 25-131 (279)
425 cd01867 Rab8_Rab10_Rab13_like 30.4 3.1E+02 0.0067 22.5 7.7 66 204-269 92-163 (167)
426 PF01740 STAS: STAS domain; I 30.4 50 0.0011 26.1 2.7 54 183-249 48-101 (117)
427 PLN02527 aspartate carbamoyltr 30.2 5.1E+02 0.011 25.0 11.5 99 173-285 55-162 (306)
428 cd06844 STAS Sulphate Transpor 30.1 1.7E+02 0.0037 22.6 5.8 56 181-249 37-92 (100)
429 KOG1014 17 beta-hydroxysteroid 30.1 1.6E+02 0.0036 29.0 6.7 63 202-270 57-122 (312)
430 KOG0203 Na+/K+ ATPase, alpha s 30.0 1E+02 0.0022 34.7 5.6 37 204-249 593-629 (1019)
431 TIGR03365 Bsubt_queE 7-cyano-7 29.9 62 0.0013 29.8 3.6 34 193-228 77-110 (238)
432 cd01994 Alpha_ANH_like_IV This 29.7 3.6E+02 0.0078 24.1 8.4 73 179-261 55-127 (194)
433 TIGR03470 HpnH hopanoid biosyn 29.6 1.2E+02 0.0026 29.1 5.7 43 178-228 68-110 (318)
434 smart00195 DSPc Dual specifici 29.6 42 0.00091 27.3 2.2 32 158-190 1-33 (138)
435 PRK11041 DNA-binding transcrip 29.5 4.2E+02 0.0091 23.8 9.2 20 262-281 227-247 (309)
436 cd04116 Rab9 Rab9 subfamily. 29.5 58 0.0012 26.9 3.1 68 182-256 79-153 (170)
437 PLN02499 glycerol-3-phosphate 29.4 31 0.00068 35.9 1.7 23 181-203 6-28 (498)
438 PRK01222 N-(5'-phosphoribosyl) 29.3 4.3E+02 0.0094 23.9 9.9 95 175-282 16-111 (210)
439 PRK09860 putative alcohol dehy 29.1 2.7E+02 0.0058 27.5 8.1 83 198-282 10-97 (383)
440 TIGR02379 ECA_wecE TDP-4-keto- 29.0 2.4E+02 0.0052 27.6 7.7 64 176-252 86-150 (376)
441 PRK09437 bcp thioredoxin-depen 28.9 1.7E+02 0.0037 24.1 5.9 80 160-251 8-89 (154)
442 TIGR00603 rad25 DNA repair hel 28.8 3.8E+02 0.0083 29.4 9.8 68 218-296 496-567 (732)
443 cd01879 FeoB Ferrous iron tran 28.7 3E+02 0.0065 21.9 7.4 49 207-256 91-139 (158)
444 cd03028 GRX_PICOT_like Glutare 28.7 2.7E+02 0.0059 21.4 8.2 66 218-284 7-73 (90)
445 COG1212 KdsB CMP-2-keto-3-deox 28.7 2.9E+02 0.0062 26.5 7.8 14 263-276 80-93 (247)
446 TIGR00157 ribosome small subun 28.5 3.3E+02 0.0071 25.1 8.2 72 206-282 56-128 (245)
447 TIGR00649 MG423 conserved hypo 28.5 5E+02 0.011 25.7 10.0 91 184-284 312-415 (422)
448 cd06603 GH31_GANC_GANAB_alpha 28.5 1.2E+02 0.0026 29.2 5.5 25 201-226 61-85 (339)
449 cd06602 GH31_MGAM_SI_GAA This 27.9 1.5E+02 0.0032 28.9 6.0 19 207-226 69-87 (339)
450 PF04273 DUF442: Putative phos 27.6 3E+02 0.0064 22.7 6.9 12 241-252 50-61 (110)
451 PRK11303 DNA-binding transcrip 27.5 4.8E+02 0.01 23.8 10.2 53 175-228 134-189 (328)
452 PRK13186 lpxC UDP-3-O-[3-hydro 27.5 2E+02 0.0043 28.1 6.7 54 175-229 195-261 (295)
453 COG0078 ArgF Ornithine carbamo 27.5 5.3E+02 0.012 25.5 9.6 47 237-283 110-162 (310)
454 cd03031 GRX_GRX_like Glutaredo 27.5 4E+02 0.0087 23.1 8.0 64 221-284 2-70 (147)
455 TIGR02668 moaA_archaeal probab 27.4 3.2E+02 0.0069 25.5 8.0 42 179-228 53-95 (302)
456 TIGR02109 PQQ_syn_pqqE coenzym 27.4 2.1E+02 0.0045 27.4 6.9 71 176-252 99-177 (358)
457 cd06324 PBP1_ABC_sugar_binding 27.3 4.8E+02 0.01 23.8 9.4 18 175-192 75-92 (305)
458 COG1454 EutG Alcohol dehydroge 27.1 3.2E+02 0.007 27.5 8.3 84 197-282 7-95 (377)
459 COG1467 PRI1 Eukaryotic-type D 26.9 74 0.0016 31.6 3.8 47 184-231 94-154 (341)
460 PRK09492 treR trehalose repres 26.8 4.8E+02 0.01 23.6 9.5 51 173-226 130-183 (315)
461 KOG0323 TFIIF-interacting CTD 26.7 63 0.0014 34.7 3.4 76 164-249 126-239 (635)
462 COG0678 AHP1 Peroxiredoxin [Po 26.5 2.6E+02 0.0057 25.2 6.7 63 179-250 34-97 (165)
463 cd04256 AAK_P5CS_ProBA AAK_P5C 26.5 60 0.0013 31.0 3.0 46 183-230 8-59 (284)
464 cd05005 SIS_PHI Hexulose-6-pho 26.3 1.9E+02 0.0041 24.9 5.9 26 203-229 88-113 (179)
465 COG4626 Phage terminase-like p 26.3 3.2E+02 0.007 29.0 8.4 88 193-294 403-495 (546)
466 PF13189 Cytidylate_kin2: Cyti 26.3 49 0.0011 28.9 2.2 48 221-278 1-48 (179)
467 cd06280 PBP1_LacI_like_4 Ligan 26.1 4.5E+02 0.0097 23.0 8.8 51 176-227 71-124 (263)
468 TIGR03679 arCOG00187 arCOG0018 26.1 4.4E+02 0.0096 23.9 8.5 63 180-252 54-116 (218)
469 TIGR03470 HpnH hopanoid biosyn 26.0 2.2E+02 0.0048 27.3 6.8 71 176-252 117-195 (318)
470 COG1099 Predicted metal-depend 25.7 3.2E+02 0.0069 26.2 7.5 126 144-279 22-162 (254)
471 cd06416 GH25_Lys1-like Lys-1 i 25.5 98 0.0021 27.3 4.0 43 184-228 88-133 (196)
472 PRK05581 ribulose-phosphate 3- 25.5 4.6E+02 0.0099 22.9 8.6 72 166-251 6-87 (220)
473 TIGR00682 lpxK tetraacyldisacc 25.3 2.9E+02 0.0062 26.9 7.4 93 182-284 27-131 (311)
474 TIGR00936 ahcY adenosylhomocys 25.3 3.9E+02 0.0085 27.1 8.6 71 199-275 38-108 (406)
475 PRK14012 cysteine desulfurase; 25.3 2.5E+02 0.0055 27.1 7.1 66 175-253 111-179 (404)
476 PF12846 AAA_10: AAA-like doma 25.1 4.9E+02 0.011 23.1 8.7 62 202-275 238-304 (304)
477 TIGR02244 HAD-IG-Ncltidse HAD 25.1 54 0.0012 32.5 2.4 42 178-220 7-50 (343)
478 PRK14569 D-alanyl-alanine synt 24.9 4.2E+02 0.0091 24.8 8.3 86 176-282 29-121 (296)
479 cd06600 GH31_MGAM-like This fa 24.8 1.5E+02 0.0033 28.4 5.5 24 202-226 62-85 (317)
480 PLN02412 probable glutathione 24.8 2.1E+02 0.0046 24.5 5.9 84 162-250 9-95 (167)
481 cd02523 PC_cytidylyltransferas 24.8 3.9E+02 0.0085 23.4 7.7 19 208-227 34-53 (229)
482 PRK10076 pyruvate formate lyas 24.7 85 0.0018 28.7 3.5 36 192-228 41-77 (213)
483 cd00886 MogA_MoaB MogA_MoaB fa 24.7 4.3E+02 0.0094 22.4 7.9 39 205-243 48-86 (152)
484 PRK13361 molybdenum cofactor b 24.7 3.6E+02 0.0078 25.8 8.0 43 179-228 58-101 (329)
485 PTZ00170 D-ribulose-5-phosphat 24.6 4.1E+02 0.0089 24.3 8.0 94 167-272 10-115 (228)
486 PF00532 Peripla_BP_1: Peripla 24.5 3.3E+02 0.0071 25.2 7.5 53 175-228 72-129 (279)
487 cd04125 RabA_like RabA-like su 24.5 4.3E+02 0.0093 22.3 7.8 56 204-259 89-147 (188)
488 TIGR00325 lpxC UDP-3-0-acyl N- 24.5 2.2E+02 0.0048 27.8 6.5 54 174-229 193-260 (297)
489 PRK10339 DNA-binding transcrip 24.4 5.3E+02 0.011 23.7 8.8 49 176-227 130-183 (327)
490 PF05221 AdoHcyase: S-adenosyl 24.3 2.4E+02 0.0051 27.3 6.5 51 199-255 49-99 (268)
491 PRK14994 SAM-dependent 16S rib 24.3 4.1E+02 0.0089 25.5 8.2 68 205-279 72-141 (287)
492 cd05017 SIS_PGI_PMI_1 The memb 24.2 2.1E+02 0.0045 23.0 5.4 40 203-253 56-95 (119)
493 TIGR00542 hxl6Piso_put hexulos 24.2 5.1E+02 0.011 23.7 8.6 50 176-225 23-72 (279)
494 cd04144 Ras2 Ras2 subfamily. 24.1 3.8E+02 0.0082 22.8 7.3 72 180-258 70-147 (190)
495 TIGR00520 asnASE_II L-asparagi 24.0 1.5E+02 0.0033 29.3 5.3 50 172-228 249-301 (349)
496 KOG1050 Trehalose-6-phosphate 24.0 1.2E+02 0.0025 33.2 4.9 48 176-227 496-543 (732)
497 cd02968 SCO SCO (an acronym fo 24.0 3.7E+02 0.0081 21.4 8.0 101 162-272 2-107 (142)
498 PF00071 Ras: Ras family; Int 23.8 3.9E+02 0.0084 21.5 7.7 58 203-260 87-147 (162)
499 COG0353 RecR Recombinational D 23.7 3.6E+02 0.0078 25.0 7.3 83 176-261 92-177 (198)
500 COG1660 Predicted P-loop-conta 23.6 2.8E+02 0.0061 27.1 6.8 57 219-282 1-59 (286)
No 1
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=100.00 E-value=3.5e-37 Score=270.81 Aligned_cols=148 Identities=36% Similarity=0.602 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHhcCCCCcCCccccCCcCCCCHHH--HHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCC-c
Q 022336 144 VEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAE--LQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH-D 220 (299)
Q Consensus 144 ~~gi~~~~~~~~~~p~ll~P~~~v~sI~~Id~~~--Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGi-k 220 (299)
++|+.++++ ++++|++++||++|+||++|||+. |++.|||+||||+|||||+|++.+++|++.+||++|++.||. +
T Consensus 1 ~~a~~~~~~-~~~~p~l~~P~l~V~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~ 79 (168)
T PF09419_consen 1 LSATLAVFR-LLRNPSLLLPHLYVPSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDR 79 (168)
T ss_pred CchhHHHHH-HHcCccccCCCEEcCChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCe
Confidence 478888888 579999999999999999999999 999999999999999999999999999999999999998665 7
Q ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCC-----CCcEEEEcCCccc-ccccceee
Q 022336 221 IAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQ-----SSQLIMVDMCRIV-IFPGPVVI 294 (299)
Q Consensus 221 VaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~-----PeEiamVGDrl~D-I~gAn~~~ 294 (299)
|+||||++|+.+ |++.++|+.+++.|||++++|+.||| .++.+++++|+.. |+|++|||||++| |.+||+.=
T Consensus 80 v~IvSNsaGs~~-d~~~~~a~~~~~~lgIpvl~h~~kKP-~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G 157 (168)
T PF09419_consen 80 VLIVSNSAGSSD-DPDGERAEALEKALGIPVLRHRAKKP-GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMG 157 (168)
T ss_pred EEEEECCCCccc-CccHHHHHHHHHhhCCcEEEeCCCCC-ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccC
Confidence 999999999887 88899999999999999999999999 5578888988764 9999999999999 99999863
No 2
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=100.00 E-value=3.3e-34 Score=249.30 Aligned_cols=156 Identities=62% Similarity=0.953 Sum_probs=146.7
Q ss_pred cCCCHHHHHHHHHHHhcCCCCcCCccccCCcCCCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCC
Q 022336 140 QRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH 219 (299)
Q Consensus 140 q~~N~~gi~~~~~~~~~~p~ll~P~~~v~sI~~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGi 219 (299)
|++|++||++++++ +++|++++||+.|+++++|||+.++..|||+||||+|||||.|++..++|.....+++|+..+|-
T Consensus 1 ~~iNIeGi~~~~~~-v~npr~~~Ph~~vptf~~ip~~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vyge 79 (190)
T KOG2961|consen 1 QRINIEGIVSSVSV-VVNPRFVLPHVSVPTFRYIPWEILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGE 79 (190)
T ss_pred CceehHHhhhhhee-eeCcceeccccccCccccCCcchhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCc
Confidence 78999999999996 78999999999999999999999999999999999999999999999999999999999999994
Q ss_pred -cEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhC----CCCCcEEEEcCCccc-cccccee
Q 022336 220 -DIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFG----CQSSQLIMVDMCRIV-IFPGPVV 293 (299)
Q Consensus 220 -kVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lG----i~PeEiamVGDrl~D-I~gAn~~ 293 (299)
.++|+||++|+..+|++.+.|+.++++.||++++|+.|||...-+..-.++| +.++|++|||||++| |.-||+.
T Consensus 80 k~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~m 159 (190)
T KOG2961|consen 80 KDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRM 159 (190)
T ss_pred ccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhc
Confidence 6999999999999999999999999999999999999999876666777778 899999999999999 9999986
Q ss_pred eee
Q 022336 294 IFL 296 (299)
Q Consensus 294 ~~~ 296 (299)
-++
T Consensus 160 Gs~ 162 (190)
T KOG2961|consen 160 GSL 162 (190)
T ss_pred cce
Confidence 543
No 3
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.96 E-value=6.1e-29 Score=218.29 Aligned_cols=125 Identities=25% Similarity=0.311 Sum_probs=119.2
Q ss_pred CCcCCccccCCcCCCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHH
Q 022336 159 HLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDAS 238 (299)
Q Consensus 159 ~ll~P~~~v~sI~~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e 238 (299)
+++.|+.++.+|++|+++.|+++|+|+|++|+||||.++......|++.+|+.+++++ |+++.|+||+. +.
T Consensus 4 k~~~Pd~~v~tv~~i~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~-gi~v~vvSNn~--------e~ 74 (175)
T COG2179 4 KFLQPDKLVETVFDITPDILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEA-GIKVVVVSNNK--------ES 74 (175)
T ss_pred hhhChhHHHhhHhhCCHHHHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhc-CCEEEEEeCCC--------HH
Confidence 5689999999999999999999999999999999999999999999999999999997 99999999997 88
Q ss_pred HHHHHHHHcCCcEEEccCCCCHH-HHHHHHHHhCCCCCcEEEEcCCccc-cccccee
Q 022336 239 KARKLEGKIGIKVIRHRVKKPAG-TAEEIEKHFGCQSSQLIMVDMCRIV-IFPGPVV 293 (299)
Q Consensus 239 ~a~~~lk~LGI~vI~ha~KKP~p-~le~alk~lGi~PeEiamVGDrl~D-I~gAn~~ 293 (299)
++..+++.||+++++.+ +||.+ ++.+|+++++++++||+|||||++| |.|||+.
T Consensus 75 RV~~~~~~l~v~fi~~A-~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~ 130 (175)
T COG2179 75 RVARAAEKLGVPFIYRA-KKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRA 130 (175)
T ss_pred HHHhhhhhcCCceeecc-cCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhccccc
Confidence 99999999999999876 68876 6999999999999999999999999 9999986
No 4
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.86 E-value=2.5e-21 Score=167.90 Aligned_cols=126 Identities=32% Similarity=0.474 Sum_probs=111.8
Q ss_pred CCcCCccccCCcCCCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHH
Q 022336 159 HLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDAS 238 (299)
Q Consensus 159 ~ll~P~~~v~sI~~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e 238 (299)
++|.||++++++.+|+++.|++.|+++|++|+||||+.+....++|++.++|++|++. |++++|+||+.+ ..
T Consensus 1 ~~~~~~~~~~~~~~i~~~~~~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~-g~~l~I~Sn~~~-------~~ 72 (170)
T TIGR01668 1 KFCLPHAIVKTLNDLTIDLLKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAA-GRKLLIVSNNAG-------EQ 72 (170)
T ss_pred CCcCcccccCchhhCCHHHHHHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHc-CCEEEEEeCCch-------HH
Confidence 4789999999999999999999999999999999999877778999999999999997 999999999862 35
Q ss_pred HHHHHHHHcCCcEEEccCCCCHHH-HHHHHHHhCCCCCcEEEEcCCc-cccccccee
Q 022336 239 KARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQLIMVDMCR-IVIFPGPVV 293 (299)
Q Consensus 239 ~a~~~lk~LGI~vI~ha~KKP~p~-le~alk~lGi~PeEiamVGDrl-~DI~gAn~~ 293 (299)
.++.+.+.+|+.++.+. .||.+. +..+++++|+++++++||||++ .||.+|+.+
T Consensus 73 ~~~~~~~~~gl~~~~~~-~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~a 128 (170)
T TIGR01668 73 RAKAVEKALGIPVLPHA-VKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRN 128 (170)
T ss_pred HHHHHHHHcCCEEEcCC-CCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHc
Confidence 67788888998766543 588874 8999999999999999999999 589998764
No 5
>PRK06769 hypothetical protein; Validated
Probab=99.71 E-value=2e-17 Score=143.94 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=86.1
Q ss_pred cCCcEEEEeccCeeecC------CCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 181 RGFKGVVFDKDNTLTAP------YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p------~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
-|||+|++|+||||..+ ....+.|++.+.|++|++. |++++|+||+.+..........+....+.+|+..++.
T Consensus 2 ~~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~-G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 80 (173)
T PRK06769 2 TNIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKAN-HIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYL 80 (173)
T ss_pred CCCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHC-CCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEE
Confidence 38999999999999855 3455789999999999997 9999999998742211111122334466678754331
Q ss_pred ---------cCCCCHHH-HHHHHHHhCCCCCcEEEEcCCccccccccee
Q 022336 255 ---------RVKKPAGT-AEEIEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 255 ---------a~KKP~p~-le~alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
...||.|. ++++++++|++|++|+||||+..||.||+.+
T Consensus 81 ~~~~~~~~~~~~KP~p~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~a 129 (173)
T PRK06769 81 CPHKHGDGCECRKPSTGMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKV 129 (173)
T ss_pred CcCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHC
Confidence 24799985 8999999999999999999999999988753
No 6
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.65 E-value=2.6e-16 Score=129.04 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=85.3
Q ss_pred cEEEEeccCeeec-------CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc--
Q 022336 184 KGVVFDKDNTLTA-------PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH-- 254 (299)
Q Consensus 184 RaLVlD~DNTLT~-------p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h-- 254 (299)
|+|+||+||||+. +....++|++.+.|+.|++. |++++|+||+.+....+...+.++.+++.+|+.+...
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~-g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 79 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEA-GYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYA 79 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHC-CCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEE
Confidence 7899999999992 22356889999999999997 9999999999754321111356777888888863221
Q ss_pred --cCCCCHHH-HHHHHHHh-CCCCCcEEEEcC-Cccccccccee
Q 022336 255 --RVKKPAGT-AEEIEKHF-GCQSSQLIMVDM-CRIVIFPGPVV 293 (299)
Q Consensus 255 --a~KKP~p~-le~alk~l-Gi~PeEiamVGD-rl~DI~gAn~~ 293 (299)
...||.+. ++.+++++ +++|++++|||| ...||.+|+.+
T Consensus 80 ~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~ 123 (132)
T TIGR01662 80 CPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRA 123 (132)
T ss_pred CCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHC
Confidence 34688874 89999999 599999999999 68999998754
No 7
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.63 E-value=7.7e-16 Score=129.94 Aligned_cols=109 Identities=16% Similarity=0.196 Sum_probs=83.8
Q ss_pred cEEEEeccCeeecCCC---------cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCcc-------HHHHHHHHHHc
Q 022336 184 KGVVFDKDNTLTAPYS---------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDND-------ASKARKLEGKI 247 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~---------~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~-------~e~a~~~lk~L 247 (299)
++++||+||||+.... ..++|++.+.|+.|++. |++++|+||+.+....... ...+..+++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~-g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAA-GYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQL 79 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHC-CCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhC
Confidence 5899999999995443 34689999999999997 9999999998732110000 14566677888
Q ss_pred CCcE---EEc--------cCCCCHHH-HHHHHHHhCCCCCcEEEEcCCccccccccee
Q 022336 248 GIKV---IRH--------RVKKPAGT-AEEIEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 248 GI~v---I~h--------a~KKP~p~-le~alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
|+.+ +.. ...||.+. ++.+++++|+++++|+||||+..||.+|+.+
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~ 137 (147)
T TIGR01656 80 GVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNA 137 (147)
T ss_pred CCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHC
Confidence 8852 221 23688875 8999999999999999999999999998653
No 8
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.63 E-value=7.3e-16 Score=133.46 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=80.9
Q ss_pred cEEEEeccCeeecCC-------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCcc-------HHHHHHHHHHcCC
Q 022336 184 KGVVFDKDNTLTAPY-------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDND-------ASKARKLEGKIGI 249 (299)
Q Consensus 184 RaLVlD~DNTLT~p~-------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~-------~e~a~~~lk~LGI 249 (299)
|+++||+||||+... +..+.|++.++|++|+++ |++++|+||+++..+.... ......+.+.+|+
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~-G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKM-GYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDV 80 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHC-CCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 789999999999422 455789999999999997 9999999999853211111 1233344555554
Q ss_pred c--EEEc---------------cCCCCHHH-HHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 250 K--VIRH---------------RVKKPAGT-AEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 250 ~--vI~h---------------a~KKP~p~-le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
. .+.. ...||.|. +..+++++|+++++++||||+..||.+|+.
T Consensus 81 ~~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~ 141 (176)
T TIGR00213 81 DLDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVA 141 (176)
T ss_pred CccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHH
Confidence 3 2211 14699985 899999999999999999999999988864
No 9
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.58 E-value=2.7e-15 Score=131.58 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=82.7
Q ss_pred HHcCCcEEEEeccCeeecCC------CcccCchHH---HHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 179 QRRGFKGVVFDKDNTLTAPY------SLTLWGPLS---SSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~------~~~l~Pgv~---e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
+..+||+|++|+||||+.+. ...+.+... ..++.|+++ |++++|+||+. ...+..+++++|+
T Consensus 17 ~~~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~-Gi~v~I~T~~~--------~~~v~~~l~~lgl 87 (183)
T PRK09484 17 KAENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTS-GIEVAIITGRK--------SKLVEDRMTTLGI 87 (183)
T ss_pred HhhCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHC-CCEEEEEeCCC--------cHHHHHHHHHcCC
Confidence 45789999999999999431 222222222 567888886 99999999997 6889999999999
Q ss_pred cEEEccCCCCHH-HHHHHHHHhCCCCCcEEEEcCCccccccccee
Q 022336 250 KVIRHRVKKPAG-TAEEIEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 250 ~vI~ha~KKP~p-~le~alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
..++.+. ++.+ .++++++++|++++|++||||+.+|+.+|+.+
T Consensus 88 ~~~f~g~-~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~a 131 (183)
T PRK09484 88 THLYQGQ-SNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKV 131 (183)
T ss_pred ceeecCC-CcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHC
Confidence 8766653 4443 58999999999999999999999998877643
No 10
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.57 E-value=6.5e-15 Score=128.15 Aligned_cols=112 Identities=20% Similarity=0.241 Sum_probs=85.2
Q ss_pred cCCcEEEEeccCeeecCCCcc-----------cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccH----HHHHHHHH
Q 022336 181 RGFKGVVFDKDNTLTAPYSLT-----------LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDA----SKARKLEG 245 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~-----------l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~----e~a~~~lk 245 (299)
+..|.++||+||||+...... ++|++.+.|++|++. |++++|+||+++..+..... ..+..+++
T Consensus 11 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~-G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~ 89 (166)
T TIGR01664 11 PQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDE-GYKIVIFTNQSGIGRGKLSAESFKNKIEAFLE 89 (166)
T ss_pred CcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHC-CCEEEEEeCCcccccCcccHHHHHHHHHHHHH
Confidence 456999999999999543322 569999999999997 99999999998532211111 35677888
Q ss_pred HcCCcEE--E--c--cCCCCHHH-HHHHHHHhC--CCCCcEEEEcCCc--------cccccccee
Q 022336 246 KIGIKVI--R--H--RVKKPAGT-AEEIEKHFG--CQSSQLIMVDMCR--------IVIFPGPVV 293 (299)
Q Consensus 246 ~LGI~vI--~--h--a~KKP~p~-le~alk~lG--i~PeEiamVGDrl--------~DI~gAn~~ 293 (299)
.+|+... . + ..+||.+. ++.+++++| +++++++||||+. .||.||+.+
T Consensus 90 ~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~a 154 (166)
T TIGR01664 90 KLKVPIQVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNL 154 (166)
T ss_pred HcCCCEEEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHC
Confidence 8887531 1 1 24688874 889999999 9999999999997 589998754
No 11
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.53 E-value=3e-14 Score=123.50 Aligned_cols=111 Identities=14% Similarity=0.109 Sum_probs=82.0
Q ss_pred CCcEEEEeccCeeecCC--------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccH-------HHHHHHHHH
Q 022336 182 GFKGVVFDKDNTLTAPY--------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDA-------SKARKLEGK 246 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~--------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~-------e~a~~~lk~ 246 (299)
-+|+++||+||||+... ...+.|++.+.|++|++. |++++|+||+.+........ +......+.
T Consensus 2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~-g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (181)
T PRK08942 2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQA-GYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLAD 80 (181)
T ss_pred CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHC-CCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH
Confidence 47999999999998433 223679999999999997 99999999997432111111 233444556
Q ss_pred cCCc---EEE--------ccCCCCHHH-HHHHHHHhCCCCCcEEEEcCCccccccccee
Q 022336 247 IGIK---VIR--------HRVKKPAGT-AEEIEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 247 LGI~---vI~--------ha~KKP~p~-le~alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
+|+. ++. ....||.|. +..+++.+|++|++++||||+..||.+|+.+
T Consensus 81 ~g~~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~a 139 (181)
T PRK08942 81 RGGRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAA 139 (181)
T ss_pred cCCccceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHC
Confidence 6652 121 134799985 8899999999999999999999999888654
No 12
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.52 E-value=1.5e-14 Score=127.06 Aligned_cols=101 Identities=13% Similarity=0.138 Sum_probs=84.1
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHH----------HHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLS----------SSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~----------e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
+.||++|||+||||| ++...+.++.. ..++.|++. |++++|+||+. ...++.+++.+|+.
T Consensus 5 ~~i~~~v~d~dGv~t-dg~~~~~~~g~~~~~~~~~D~~~~~~L~~~-Gi~laIiT~k~--------~~~~~~~l~~lgi~ 74 (169)
T TIGR02726 5 KNIKLVILDVDGVMT-DGRIVINDEGIESRNFDIKDGMGVIVLQLC-GIDVAIITSKK--------SGAVRHRAEELKIK 74 (169)
T ss_pred ccCeEEEEeCceeeE-CCeEEEcCCCcEEEEEecchHHHHHHHHHC-CCEEEEEECCC--------cHHHHHHHHHCCCc
Confidence 459999999999999 77666554332 467788887 99999999998 78899999999998
Q ss_pred EEEccCCCCHH-HHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 251 VIRHRVKKPAG-TAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 251 vI~ha~KKP~p-~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
.++... ||.| .++.+++++|+++++++||||+.+|+.+++.
T Consensus 75 ~~f~~~-kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ 116 (169)
T TIGR02726 75 RFHEGI-KKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKR 116 (169)
T ss_pred EEEecC-CCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHH
Confidence 666554 5655 4899999999999999999999999877654
No 13
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.51 E-value=3.2e-14 Score=123.53 Aligned_cols=109 Identities=16% Similarity=0.103 Sum_probs=84.2
Q ss_pred cEEEEeccCeeecCC----------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCC--Cc-----cHHHHHHHHHH
Q 022336 184 KGVVFDKDNTLTAPY----------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEY--DN-----DASKARKLEGK 246 (299)
Q Consensus 184 RaLVlD~DNTLT~p~----------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~--d~-----~~e~a~~~lk~ 246 (299)
|+++||+||||+... ...+.|++.+.|++|+++ |++++|+||++|.... .. ....+..+++.
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~-g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~ 80 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKA-GYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRS 80 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHC-CCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH
Confidence 689999999999521 234779999999999997 9999999999764321 11 12356667788
Q ss_pred cCCcE--E-Ec--------cCCCCHHH-HHHHHHHhCCCCCcEEEEcCCccccccccee
Q 022336 247 IGIKV--I-RH--------RVKKPAGT-AEEIEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 247 LGI~v--I-~h--------a~KKP~p~-le~alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
+|+.+ + .. ..+||.+. +..+++.+|+++++++||||+..||.+|+.+
T Consensus 81 ~gl~fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~a 139 (161)
T TIGR01261 81 QGIIFDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENL 139 (161)
T ss_pred CCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHC
Confidence 88762 2 21 24688875 8899999999999999999999999988753
No 14
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.50 E-value=3.8e-14 Score=126.51 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=86.7
Q ss_pred CcEEEEeccCeeecCCC--------cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCC-------ccHHHHHHHHHHc
Q 022336 183 FKGVVFDKDNTLTAPYS--------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYD-------NDASKARKLEGKI 247 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~--------~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d-------~~~e~a~~~lk~L 247 (299)
-++|++|+||||..+.. ..+.|++.+++..+++. |++++||||+.|+++.- ........+++..
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~-gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~ 83 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRA-GYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQ 83 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhC-CCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHc
Confidence 58999999999996554 34679999999999986 99999999999998532 2223455566666
Q ss_pred CCc-----EEEc------cCCCCHHH-HHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 248 GIK-----VIRH------RVKKPAGT-AEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 248 GI~-----vI~h------a~KKP~p~-le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
|+. ++.| .++||.++ ++++++++++++++.+||||++.||.+|..
T Consensus 84 gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n 140 (181)
T COG0241 84 GVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAEN 140 (181)
T ss_pred CCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHH
Confidence 742 2223 57899987 899999999999999999999999888754
No 15
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.49 E-value=5.8e-14 Score=120.09 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=77.6
Q ss_pred CcEEEEeccCeeecCCCcccCch--------HH--HHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGP--------LS--SSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI 252 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pg--------v~--e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI 252 (299)
||+|+||+||||+ ++.....+. +. ..+++|++. |++++|+||+. ...+..+++.+|+..+
T Consensus 1 ~~~~~~D~Dgtl~-~~~~~~~~~~~~~~~~~~~~~~~i~~Lk~~-G~~i~IvTn~~--------~~~~~~~l~~~gi~~~ 70 (154)
T TIGR01670 1 IRLLILDVDGVLT-DGKIYYTNNGEEIKAFNVRDGYGIRCALKS-GIEVAIITGRK--------AKLVEDRCKTLGITHL 70 (154)
T ss_pred CeEEEEeCceeEE-cCeEEECCCCcEEEEEechhHHHHHHHHHC-CCEEEEEECCC--------CHHHHHHHHHcCCCEE
Confidence 6899999999999 432211111 11 379999997 99999999998 6788889999999765
Q ss_pred EccCCCCHH-HHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 253 RHRVKKPAG-TAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 253 ~ha~KKP~p-~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
+.+. ||.+ .+.++++++|+++++++||||+.+|+.+++.
T Consensus 71 ~~~~-~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ 110 (154)
T TIGR01670 71 YQGQ-SNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEK 110 (154)
T ss_pred Eecc-cchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHH
Confidence 5543 5555 4889999999999999999999999776654
No 16
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.48 E-value=7.1e-14 Score=116.31 Aligned_cols=99 Identities=19% Similarity=0.116 Sum_probs=76.4
Q ss_pred cEEEEeccCeeecCCC--cc---------cCchHHHHHHHHHHhCCCcEEEEeCC-CCCCCCCccHHHHHHHHHHcC---
Q 022336 184 KGVVFDKDNTLTAPYS--LT---------LWGPLSSSIEQCKSVFGHDIAVFSNS-AGLYEYDNDASKARKLEGKIG--- 248 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~--~~---------l~Pgv~e~L~~Lke~fGikVaIVSNn-aGs~~~d~~~e~a~~~lk~LG--- 248 (299)
|+|++|+||||+.+.. .. ++|++.+.|+.|++. |++++|+||+ . ...+..+.+.++
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~-g~~l~i~Sn~~~--------~~~~~~~l~~~~~~~ 71 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKN-GFLLALASYNDD--------PHVAYELLKIFEDFG 71 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHC-CeEEEEEeCCCC--------HHHHHHHHHhccccc
Confidence 6899999999995531 12 588999999999997 9999999999 5 556666667666
Q ss_pred ----Cc----EEEccCCCCHH-HHHHHHHHhC--CCCCcEEEEcCCcccccccc
Q 022336 249 ----IK----VIRHRVKKPAG-TAEEIEKHFG--CQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 249 ----I~----vI~ha~KKP~p-~le~alk~lG--i~PeEiamVGDrl~DI~gAn 291 (299)
+. .+..+..+|.| .+..+++++| +.|++|+||||+..++.+.+
T Consensus 72 ~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n~~~~~ 125 (128)
T TIGR01681 72 IIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDDRPDNNEEVD 125 (128)
T ss_pred cchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECCCHhHHHHHH
Confidence 32 11112235665 4899999999 99999999999999866543
No 17
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.46 E-value=1.1e-13 Score=124.76 Aligned_cols=82 Identities=11% Similarity=0.157 Sum_probs=66.4
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE----ccCCCCHHH-HHHHHHHhCCC
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQ 273 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~----ha~KKP~p~-le~alk~lGi~ 273 (299)
.|++.+.|+.|++. |++++|+||+. .+.+....+.+|+. .+. .+..||.|. ++.+++++|++
T Consensus 95 ~~g~~e~L~~Lk~~-g~~~~i~Tn~~--------~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~ 165 (224)
T PRK14988 95 REDTVPFLEALKAS-GKRRILLTNAH--------PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLK 165 (224)
T ss_pred CCCHHHHHHHHHhC-CCeEEEEeCcC--------HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCC
Confidence 46777778889987 99999999987 66777777878763 221 245789884 89999999999
Q ss_pred CCcEEEEcCCccccccccee
Q 022336 274 SSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 274 PeEiamVGDrl~DI~gAn~~ 293 (299)
|++|+||||+..||.+|+.+
T Consensus 166 p~~~l~igDs~~di~aA~~a 185 (224)
T PRK14988 166 AERTLFIDDSEPILDAAAQF 185 (224)
T ss_pred hHHEEEEcCCHHHHHHHHHc
Confidence 99999999999999888653
No 18
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.46 E-value=1.3e-13 Score=121.32 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=67.8
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE----c----cCCCCHHH-HHHHHHHhCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR----H----RVKKPAGT-AEEIEKHFGC 272 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~----h----a~KKP~p~-le~alk~lGi 272 (299)
+.|++.+.|+.|++. |++++|+||+. ...+..+++.+|+..++ . ...||.|. +.++++++|+
T Consensus 83 ~~~g~~~~l~~L~~~-g~~~~i~S~~~--------~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~ 153 (214)
T PRK13288 83 EYETVYETLKTLKKQ-GYKLGIVTTKM--------RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGA 153 (214)
T ss_pred cCcCHHHHHHHHHHC-CCeEEEEeCCC--------HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCC
Confidence 457778888889987 99999999997 67888888999885322 1 23688874 8999999999
Q ss_pred CCCcEEEEcCCcccccccce
Q 022336 273 QSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~ 292 (299)
+|++++||||+..||.+|+.
T Consensus 154 ~~~~~~~iGDs~~Di~aa~~ 173 (214)
T PRK13288 154 KPEEALMVGDNHHDILAGKN 173 (214)
T ss_pred CHHHEEEECCCHHHHHHHHH
Confidence 99999999999999988864
No 19
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.45 E-value=1.9e-13 Score=122.42 Aligned_cols=84 Identities=15% Similarity=0.176 Sum_probs=72.5
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE--------ccCCCCHHH-HHHHHHHhC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR--------HRVKKPAGT-AEEIEKHFG 271 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~--------ha~KKP~p~-le~alk~lG 271 (299)
.+.|++.+.|++|++. |++++|+||+. ...++.+++.+|+..++ ...+||+|. +..+++.+|
T Consensus 89 ~~~~gv~e~L~~L~~~-g~~l~i~T~k~--------~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~ 159 (220)
T COG0546 89 RLFPGVKELLAALKSA-GYKLGIVTNKP--------ERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLG 159 (220)
T ss_pred ccCCCHHHHHHHHHhC-CCeEEEEeCCc--------HHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhC
Confidence 4678899999999997 99999999998 78899999999874322 135889984 889999999
Q ss_pred CCCCcEEEEcCCccccccccee
Q 022336 272 CQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 272 i~PeEiamVGDrl~DI~gAn~~ 293 (299)
++|++++||||+..||.+|+.+
T Consensus 160 ~~~~~~l~VGDs~~Di~aA~~A 181 (220)
T COG0546 160 LDPEEALMVGDSLNDILAAKAA 181 (220)
T ss_pred CChhheEEECCCHHHHHHHHHc
Confidence 9999999999999999998876
No 20
>PRK11587 putative phosphatase; Provisional
Probab=99.45 E-value=2e-13 Score=121.24 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=65.6
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc---EEEc----cCCCCHHH-HHHHHHHhCCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK---VIRH----RVKKPAGT-AEEIEKHFGCQ 273 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~---vI~h----a~KKP~p~-le~alk~lGi~ 273 (299)
+.|++.+.|+.|++. |++++|+||+. ...+....+.+|+. .+.. ...||.|. +..+++.+|++
T Consensus 84 ~~pg~~e~L~~L~~~-g~~~~ivTn~~--------~~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~ 154 (218)
T PRK11587 84 ALPGAIALLNHLNKL-GIPWAIVTSGS--------VPVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLA 154 (218)
T ss_pred eCcCHHHHHHHHHHc-CCcEEEEcCCC--------chHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHcCCC
Confidence 467888888899987 99999999997 44555666666653 2211 34688884 88999999999
Q ss_pred CCcEEEEcCCccccccccee
Q 022336 274 SSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 274 PeEiamVGDrl~DI~gAn~~ 293 (299)
|++|+||||+..||.+|+.+
T Consensus 155 p~~~l~igDs~~di~aA~~a 174 (218)
T PRK11587 155 PQECVVVEDAPAGVLSGLAA 174 (218)
T ss_pred cccEEEEecchhhhHHHHHC
Confidence 99999999999999988753
No 21
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.44 E-value=1.2e-13 Score=121.20 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=83.1
Q ss_pred HHcCCcEEEEeccCeeecCCCcccCchH--HH--------HHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPL--SS--------SIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~~~~l~Pgv--~e--------~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
+.+.||.+++|+||||| ++...+.+.- .. .++.|.+. |++++|+|... ...++.+++.||
T Consensus 4 ra~~IkLli~DVDGvLT-DG~ly~~~~Gee~KaFnv~DG~Gik~l~~~-Gi~vAIITGr~--------s~ive~Ra~~LG 73 (170)
T COG1778 4 RAKNIKLLILDVDGVLT-DGKLYYDENGEEIKAFNVRDGHGIKLLLKS-GIKVAIITGRD--------SPIVEKRAKDLG 73 (170)
T ss_pred hhhhceEEEEeccceee-cCeEEEcCCCceeeeeeccCcHHHHHHHHc-CCeEEEEeCCC--------CHHHHHHHHHcC
Confidence 46789999999999999 7776654322 11 35556665 99999999997 688999999999
Q ss_pred CcEEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 249 IKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 249 I~vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
|.+++.+.......++++++++++.++||+||||++.|+
T Consensus 74 I~~~~qG~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dl 112 (170)
T COG1778 74 IKHLYQGISDKLAAFEELLKKLNLDPEEVAYVGDDLVDL 112 (170)
T ss_pred CceeeechHhHHHHHHHHHHHhCCCHHHhhhhcCccccH
Confidence 999998876666679999999999999999999999993
No 22
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.44 E-value=2.4e-13 Score=118.12 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=69.6
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEEc----cCCCCHHH-HHHHHHHhC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIRH----RVKKPAGT-AEEIEKHFG 271 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~h----a~KKP~p~-le~alk~lG 271 (299)
.+.|++.++|++|++. |++++|+||+. ...++..++.+|+. .+.. +..||.+. ++.+++.+|
T Consensus 92 ~~~~~~~~~L~~L~~~-g~~~~i~Sn~~--------~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~ 162 (198)
T TIGR01428 92 PPHPDVPAGLRALKER-GYRLAILSNGS--------PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEALG 162 (198)
T ss_pred CCCCCHHHHHHHHHHC-CCeEEEEeCCC--------HHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHHhC
Confidence 3567888888999987 99999999997 67788888888873 2221 35689875 899999999
Q ss_pred CCCCcEEEEcCCccccccccee
Q 022336 272 CQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 272 i~PeEiamVGDrl~DI~gAn~~ 293 (299)
++|++++||||+..||.||+.+
T Consensus 163 ~~p~~~~~vgD~~~Di~~A~~~ 184 (198)
T TIGR01428 163 VPPDEVLFVASNPWDLGGAKKF 184 (198)
T ss_pred CChhhEEEEeCCHHHHHHHHHC
Confidence 9999999999999999998753
No 23
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.43 E-value=2.3e-13 Score=126.14 Aligned_cols=82 Identities=13% Similarity=0.047 Sum_probs=67.3
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE----EEc----cCCCCHHH-HHHHHHHhCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV----IRH----RVKKPAGT-AEEIEKHFGC 272 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v----I~h----a~KKP~p~-le~alk~lGi 272 (299)
+.|++.+.|+.|++. |++++|+||+. ...++.+++.+|+.. +.. ...||.|. +..+++++|+
T Consensus 110 l~pg~~e~L~~L~~~-g~~l~I~Tn~~--------~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~~ 180 (260)
T PLN03243 110 LRPGSREFVQALKKH-EIPIAVASTRP--------RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLGF 180 (260)
T ss_pred cCCCHHHHHHHHHHC-CCEEEEEeCcC--------HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhCC
Confidence 346666777788887 99999999997 678888889888742 211 34699985 8999999999
Q ss_pred CCCcEEEEcCCcccccccce
Q 022336 273 QSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~ 292 (299)
+|++|+||||+..||.+|+.
T Consensus 181 ~p~~~l~IgDs~~Di~aA~~ 200 (260)
T PLN03243 181 IPERCIVFGNSNSSVEAAHD 200 (260)
T ss_pred ChHHeEEEcCCHHHHHHHHH
Confidence 99999999999999988875
No 24
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.42 E-value=4.1e-13 Score=118.29 Aligned_cols=84 Identities=14% Similarity=0.073 Sum_probs=68.3
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc--EE----Ec----cCCCCHHH-HHHHHHH
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK--VI----RH----RVKKPAGT-AEEIEKH 269 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~--vI----~h----a~KKP~p~-le~alk~ 269 (299)
.+.||+.+.|+.|++. |++++|+||+. ...+...++.+|+. .+ .. ...||.|. +..++++
T Consensus 87 ~l~~G~~~~L~~L~~~-g~~~~ivT~~~--------~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~ 157 (220)
T TIGR03351 87 VALPGAEEAFRSLRSS-GIKVALTTGFD--------RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMEL 157 (220)
T ss_pred ccCCCHHHHHHHHHHC-CCEEEEEeCCc--------hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHH
Confidence 4667888888999987 99999999997 67778888888764 21 11 24688884 8899999
Q ss_pred hCCC-CCcEEEEcCCccccccccee
Q 022336 270 FGCQ-SSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 270 lGi~-PeEiamVGDrl~DI~gAn~~ 293 (299)
+|+. |++++||||+..||.+|+.+
T Consensus 158 ~~~~~~~~~~~igD~~~Di~aa~~a 182 (220)
T TIGR03351 158 TGVQDVQSVAVAGDTPNDLEAGINA 182 (220)
T ss_pred cCCCChhHeEEeCCCHHHHHHHHHC
Confidence 9997 79999999999999988753
No 25
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.42 E-value=3.4e-13 Score=122.90 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=66.5
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE----EEc----cCCCCHHH-HHHHHHHhCCC
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV----IRH----RVKKPAGT-AEEIEKHFGCQ 273 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v----I~h----a~KKP~p~-le~alk~lGi~ 273 (299)
.|++.+.|+.|++. |++++|+||+. ...++..++.+|+.. +.. ...||+|. +..+++++|++
T Consensus 110 ~pgv~e~L~~L~~~-g~~l~I~Tn~~--------~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~~~~~ 180 (248)
T PLN02770 110 LNGLYKLKKWIEDR-GLKRAAVTNAP--------RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVS 180 (248)
T ss_pred CccHHHHHHHHHHc-CCeEEEEeCCC--------HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHHhCCC
Confidence 45666677778887 99999999998 788888999998742 211 24688884 89999999999
Q ss_pred CCcEEEEcCCcccccccce
Q 022336 274 SSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 274 PeEiamVGDrl~DI~gAn~ 292 (299)
|++|+||||+..||.+|+.
T Consensus 181 ~~~~l~vgDs~~Di~aA~~ 199 (248)
T PLN02770 181 KDHTFVFEDSVSGIKAGVA 199 (248)
T ss_pred hhHEEEEcCCHHHHHHHHH
Confidence 9999999999999988864
No 26
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.41 E-value=4.6e-13 Score=117.56 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=66.4
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE----EE----ccCCCCHHH-HHHHHHHhCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV----IR----HRVKKPAGT-AEEIEKHFGC 272 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v----I~----ha~KKP~p~-le~alk~lGi 272 (299)
+.|++.+.|++|++. |++++|+||+. ...+...++.+|+.. +. .+..||.+. +..+++++|+
T Consensus 95 ~~~g~~~~L~~L~~~-g~~~~i~Tn~~--------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~ 165 (221)
T TIGR02253 95 VYPGVRDTLMELRES-GYRLGIITDGL--------PVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGV 165 (221)
T ss_pred CCCCHHHHHHHHHHC-CCEEEEEeCCc--------hHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHHcCC
Confidence 456677778888887 99999999997 566777788888741 21 134689884 8999999999
Q ss_pred CCCcEEEEcCCc-cccccccee
Q 022336 273 QSSQLIMVDMCR-IVIFPGPVV 293 (299)
Q Consensus 273 ~PeEiamVGDrl-~DI~gAn~~ 293 (299)
+|++++||||+. .||.+|+.+
T Consensus 166 ~~~~~~~igDs~~~di~~A~~a 187 (221)
T TIGR02253 166 KPEEAVMVGDRLDKDIKGAKNL 187 (221)
T ss_pred ChhhEEEECCChHHHHHHHHHC
Confidence 999999999998 799888754
No 27
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.41 E-value=4.3e-13 Score=120.48 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=66.2
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEEc----cCCCCHHH-HHHHHHHhCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIRH----RVKKPAGT-AEEIEKHFGC 272 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~h----a~KKP~p~-le~alk~lGi 272 (299)
+.|++.+.|+.|++. |++++|+||+. ...+..+.+.+|+. ++.. ...||.|. +..+++++|+
T Consensus 96 ~~pg~~~~L~~L~~~-g~~l~i~Tn~~--------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~ 166 (229)
T PRK13226 96 LFDGVEGMLQRLECA-GCVWGIVTNKP--------EYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGV 166 (229)
T ss_pred eCCCHHHHHHHHHHC-CCeEEEECCCC--------HHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCC
Confidence 456777788888887 99999999997 56677778888863 2221 34688884 8999999999
Q ss_pred CCCcEEEEcCCcccccccce
Q 022336 273 QSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~ 292 (299)
+|++|+||||+..||.+|+.
T Consensus 167 ~p~~~l~IGDs~~Di~aA~~ 186 (229)
T PRK13226 167 APTDCVYVGDDERDILAARA 186 (229)
T ss_pred ChhhEEEeCCCHHHHHHHHH
Confidence 99999999999999988864
No 28
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.38 E-value=8e-13 Score=117.24 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=66.6
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc--------cCCCCHH-HHHHHHHHhCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH--------RVKKPAG-TAEEIEKHFGC 272 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h--------a~KKP~p-~le~alk~lGi 272 (299)
+.|++.+.|+.|++. |++++|+||+. ...++.+.+.+|+..++. ...||.+ .+..+++.+|+
T Consensus 93 ~~~g~~~~l~~l~~~-g~~~~i~S~~~--------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 163 (222)
T PRK10826 93 LLPGVREALALCKAQ-GLKIGLASASP--------LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGV 163 (222)
T ss_pred CCCCHHHHHHHHHHC-CCeEEEEeCCc--------HHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence 456677777788887 99999999987 677888888888742221 2467877 48999999999
Q ss_pred CCCcEEEEcCCccccccccee
Q 022336 273 QSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~~ 293 (299)
+|++|+||||+..||.+|+.+
T Consensus 164 ~~~~~~~igDs~~Di~aA~~a 184 (222)
T PRK10826 164 DPLTCVALEDSFNGMIAAKAA 184 (222)
T ss_pred CHHHeEEEcCChhhHHHHHHc
Confidence 999999999999998888643
No 29
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.38 E-value=7e-13 Score=125.59 Aligned_cols=102 Identities=22% Similarity=0.195 Sum_probs=82.9
Q ss_pred CCcEEEEeccCeeecCC---Cc--------ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHH----
Q 022336 182 GFKGVVFDKDNTLTAPY---SL--------TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGK---- 246 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~---~~--------~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~---- 246 (299)
-+|+||+|+||||+. + +. .+++++.++|.+|+++ |++++|+||+. ...+..+.++
T Consensus 2 ~~k~~v~DlDnTlw~-gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~-Gi~lai~S~n~--------~~~a~~~l~~~~~~ 71 (320)
T TIGR01686 2 ALKVLVLDLDNTLWG-GVLGEDGIDNLNLSPLHKTLQEKIKTLKKQ-GFLLALASKND--------EDDAKKVFERRKDF 71 (320)
T ss_pred CeEEEEEcCCCCCCC-CEEccCCccccccCccHHHHHHHHHHHHhC-CCEEEEEcCCC--------HHHHHHHHHhCccc
Confidence 379999999999983 3 11 2468899999999997 99999999998 7888888888
Q ss_pred cCCcE-E--EccCCCCHH-HHHHHHHHhCCCCCcEEEEcCCccccccccee
Q 022336 247 IGIKV-I--RHRVKKPAG-TAEEIEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 247 LGI~v-I--~ha~KKP~p-~le~alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
+++.. + .....||.+ .+.++++++|+.+++++||||+.+|+.+++..
T Consensus 72 ~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~ 122 (320)
T TIGR01686 72 ILQAEDFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPAERANVKIT 122 (320)
T ss_pred cCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHHH
Confidence 77641 1 123357877 48999999999999999999999998877653
No 30
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.36 E-value=1.7e-12 Score=127.27 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=69.1
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEEc----cCCCCHHH-HHHHHHHhCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIRH----RVKKPAGT-AEEIEKHFGC 272 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~h----a~KKP~p~-le~alk~lGi 272 (299)
+.||+.+.|+.|++. |++++|+||+. ...++.+.+.+|+. .+.. ...||.|. +..+++.+|+
T Consensus 217 l~pGa~ElL~~Lk~~-GiklaIaSn~~--------~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl 287 (381)
T PLN02575 217 LRTGSQEFVNVLMNY-KIPMALVSTRP--------RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNF 287 (381)
T ss_pred cCcCHHHHHHHHHHC-CCeEEEEeCCC--------HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCC
Confidence 457778888889887 99999999998 78899999999874 2211 24689884 8999999999
Q ss_pred CCCcEEEEcCCccccccccee
Q 022336 273 QSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~~ 293 (299)
+|++|+||||+..||.+|+.+
T Consensus 288 ~Peecl~IGDS~~DIeAAk~A 308 (381)
T PLN02575 288 IPERCIVFGNSNQTVEAAHDA 308 (381)
T ss_pred CcccEEEEcCCHHHHHHHHHc
Confidence 999999999999999988753
No 31
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.35 E-value=2.6e-12 Score=124.95 Aligned_cols=109 Identities=16% Similarity=0.148 Sum_probs=84.1
Q ss_pred CcEEEEeccCeeecCC----------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCC--CCc-----cHHHHHHHHH
Q 022336 183 FKGVVFDKDNTLTAPY----------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYE--YDN-----DASKARKLEG 245 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~----------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~--~d~-----~~e~a~~~lk 245 (299)
-|.++||+||||+... ...++|++.++|++|++. |++++|+||+.|++. +.. ....+..+.+
T Consensus 2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~-G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~ 80 (354)
T PRK05446 2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKA-GYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFE 80 (354)
T ss_pred CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhC-CCeEEEEECCccccCccccHHHHhhHHHHHHHHHH
Confidence 4789999999999532 456899999999999987 999999999875542 111 1234556677
Q ss_pred HcCCcE--EE-c--------cCCCCHHH-HHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 246 KIGIKV--IR-H--------RVKKPAGT-AEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 246 ~LGI~v--I~-h--------a~KKP~p~-le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
.+|+.+ +. . ..+||.+. +..+++.+++++++++||||+..||.+|+.
T Consensus 81 ~~gl~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~ 139 (354)
T PRK05446 81 SQGIKFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRETDVQLAEN 139 (354)
T ss_pred HcCCceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHH
Confidence 777752 21 1 25789875 788899999999999999999999998864
No 32
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.35 E-value=3e-12 Score=100.38 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=79.1
Q ss_pred EEEEeccCeeecCCC-------cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE
Q 022336 185 GVVFDKDNTLTAPYS-------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR 253 (299)
Q Consensus 185 aLVlD~DNTLT~p~~-------~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~ 253 (299)
+++||+||||+.... ..+.+++.+.|++|++. |++++|+||+. ...++.+.+.+|+. .+.
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-g~~i~ivS~~~--------~~~~~~~~~~~~~~~~~~~i~ 71 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEK-GIKLALATNKS--------RREVLELLEELGLDDYFDPVI 71 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHC-CCeEEEEeCch--------HHHHHHHHHHcCCchhhhhee
Confidence 489999999994433 27899999999999997 99999999997 67788888887762 121
Q ss_pred c--c--CC----------------CCHH-HHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 254 H--R--VK----------------KPAG-TAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 254 h--a--~K----------------KP~p-~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
. . .. ||.+ .+..+++.++..++++++|||+..|+.+|..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~ 131 (139)
T cd01427 72 TSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKA 131 (139)
T ss_pred ccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHH
Confidence 1 1 11 6665 4788999999999999999999999887765
No 33
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.30 E-value=5.4e-12 Score=111.11 Aligned_cols=83 Identities=16% Similarity=0.056 Sum_probs=64.9
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc------------------cCCCCHH-H
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH------------------RVKKPAG-T 262 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h------------------a~KKP~p-~ 262 (299)
+.|++.+.|+.|++. |++++|+||+. ...++.+++.+|+..++. ...+|.+ .
T Consensus 86 ~~~g~~~~l~~l~~~-g~~~~IvS~~~--------~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 156 (219)
T TIGR00338 86 LTEGAEELVKTLKEK-GYKVAVISGGF--------DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKT 156 (219)
T ss_pred cCCCHHHHHHHHHHC-CCEEEEECCCc--------HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHH
Confidence 346777777889887 99999999987 678888999988753321 0122334 4
Q ss_pred HHHHHHHhCCCCCcEEEEcCCccccccccee
Q 022336 263 AEEIEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 263 le~alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
++.+++++|+++++|+||||+..|+.+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~a 187 (219)
T TIGR00338 157 LLILLRKEGISPENTVAVGDGANDLSMIKAA 187 (219)
T ss_pred HHHHHHHcCCCHHHEEEEECCHHHHHHHHhC
Confidence 7889999999999999999999998887765
No 34
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.30 E-value=3.5e-12 Score=108.64 Aligned_cols=83 Identities=13% Similarity=0.172 Sum_probs=66.7
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE----ccCCCCHHH-HHHHHHHh
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHF 270 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~----ha~KKP~p~-le~alk~l 270 (299)
..+.|++.+.|+.|++. |++++|+||+. .++.+++.+|+. .+. ....||.+. +..+++++
T Consensus 87 ~~~~~g~~~~l~~l~~~-g~~i~i~S~~~----------~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~ 155 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKK-GIAVGLGSSSK----------NADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELL 155 (185)
T ss_pred CCCCcCHHHHHHHHHHc-CCeEEEEeCch----------hHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHc
Confidence 45678889999999987 99999999973 366677777763 222 134688874 88999999
Q ss_pred CCCCCcEEEEcCCccccccccee
Q 022336 271 GCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 271 Gi~PeEiamVGDrl~DI~gAn~~ 293 (299)
|++|++++||||+..||.+|+.+
T Consensus 156 ~~~~~~~v~IgD~~~di~aA~~~ 178 (185)
T TIGR02009 156 GVSPNECVVFEDALAGVQAARAA 178 (185)
T ss_pred CCCHHHeEEEeCcHhhHHHHHHC
Confidence 99999999999999999998754
No 35
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.30 E-value=7.1e-12 Score=109.94 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=66.3
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE----EEc----cCCCCHH-HHHHHHHHhCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV----IRH----RVKKPAG-TAEEIEKHFGC 272 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v----I~h----a~KKP~p-~le~alk~lGi 272 (299)
+.|++.++++.+++. |++++|+||+. ...+..+++.+|+.. +.. ...||.+ .+..+++++++
T Consensus 94 ~~~g~~~~l~~l~~~-g~~~~i~S~~~--------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 164 (226)
T PRK13222 94 LYPGVKETLAALKAA-GYPLAVVTNKP--------TPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGL 164 (226)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEEeCCC--------HHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHcCC
Confidence 456777777888886 99999999997 677778888888632 211 2467776 48999999999
Q ss_pred CCCcEEEEcCCccccccccee
Q 022336 273 QSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~~ 293 (299)
++++++||||+..||.+|+.+
T Consensus 165 ~~~~~i~igD~~~Di~~a~~~ 185 (226)
T PRK13222 165 DPEEMLFVGDSRNDIQAARAA 185 (226)
T ss_pred ChhheEEECCCHHHHHHHHHC
Confidence 999999999999999888754
No 36
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.29 E-value=8.8e-12 Score=126.70 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=85.9
Q ss_pred cCCcEEEEeccCeeecCC----------Ccc-cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCcc----HHHHHHHHH
Q 022336 181 RGFKGVVFDKDNTLTAPY----------SLT-LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDND----ASKARKLEG 245 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~----------~~~-l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~----~e~a~~~lk 245 (299)
...|+++||+||||+... +.. ++|++.+.|++|++. |++|+|+||++|+...... ...+..+++
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~-Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~ 244 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEAD-GFKICIFTNQGGIARGKINADDFKAKIEAIVA 244 (526)
T ss_pred ccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHC-CCEEEEEECCcccccCcccHHHHHHHHHHHHH
Confidence 345999999999999532 122 579999999999997 9999999999986532221 235778888
Q ss_pred HcCCcEE--E--c--cCCCCHHH-HHHHHHHhC----CCCCcEEEEcCCcccccccce
Q 022336 246 KIGIKVI--R--H--RVKKPAGT-AEEIEKHFG----CQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 246 ~LGI~vI--~--h--a~KKP~p~-le~alk~lG----i~PeEiamVGDrl~DI~gAn~ 292 (299)
.+|+++. . + ..+||.++ +..++++++ +++++++||||...|+.+|+.
T Consensus 245 ~lgipfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ 302 (526)
T TIGR01663 245 KLGVPFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKA 302 (526)
T ss_pred HcCCceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHh
Confidence 8998632 1 1 35799986 788889884 899999999999999877553
No 37
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.29 E-value=3.6e-12 Score=112.74 Aligned_cols=101 Identities=20% Similarity=0.148 Sum_probs=73.5
Q ss_pred CcEEEEeccCeeecCC-------------------------CcccCchHHHHHHHHHHhCCCcEEEEeCC-CCCCCCCcc
Q 022336 183 FKGVVFDKDNTLTAPY-------------------------SLTLWGPLSSSIEQCKSVFGHDIAVFSNS-AGLYEYDND 236 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~-------------------------~~~l~Pgv~e~L~~Lke~fGikVaIVSNn-aGs~~~d~~ 236 (299)
.|.+|||+|+||+.++ ...++|++.+.|+.|++. |++++|+||+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~-G~~l~I~Sn~~~-------- 72 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDA-GTYLATASWNDV-------- 72 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHC-CCEEEEEeCCCC--------
Confidence 4789999999986211 234679999999999997 9999999998 5
Q ss_pred HHHHHHHHHHcCCc---------EEE------cc--CCCCHHH-HHHHHHHh--CCCCCcEEEEcCCcccccccce
Q 022336 237 ASKARKLEGKIGIK---------VIR------HR--VKKPAGT-AEEIEKHF--GCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 237 ~e~a~~~lk~LGI~---------vI~------ha--~KKP~p~-le~alk~l--Gi~PeEiamVGDrl~DI~gAn~ 292 (299)
...++.+++.+|+. .++ .. .+||.+. ++.+.+.+ |++|++|+||||+..||.+|+.
T Consensus 73 ~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~ 148 (174)
T TIGR01685 73 PEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWG 148 (174)
T ss_pred hHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHH
Confidence 56777888888764 211 11 2233333 33344444 7999999999999999888764
No 38
>PLN02940 riboflavin kinase
Probab=99.26 E-value=7.4e-12 Score=122.00 Aligned_cols=82 Identities=22% Similarity=0.204 Sum_probs=64.9
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHH-HcCCc----EEEc----cCCCCHHH-HHHHHHHhC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEG-KIGIK----VIRH----RVKKPAGT-AEEIEKHFG 271 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk-~LGI~----vI~h----a~KKP~p~-le~alk~lG 271 (299)
+.|++.+.|+.|++. |++++|+||+. ...+...++ .+|+. .+.. ...||+|. +..+++.+|
T Consensus 94 l~pGv~elL~~Lk~~-g~~l~IvTn~~--------~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lg 164 (382)
T PLN02940 94 ALPGANRLIKHLKSH-GVPMALASNSP--------RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLN 164 (382)
T ss_pred CCcCHHHHHHHHHHC-CCcEEEEeCCc--------HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcC
Confidence 457777888889987 99999999997 566665554 56652 2221 34699885 899999999
Q ss_pred CCCCcEEEEcCCcccccccce
Q 022336 272 CQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 272 i~PeEiamVGDrl~DI~gAn~ 292 (299)
++|++|+||||+..||.+|+.
T Consensus 165 v~p~~~l~VGDs~~Di~aA~~ 185 (382)
T PLN02940 165 VEPSNCLVIEDSLPGVMAGKA 185 (382)
T ss_pred CChhHEEEEeCCHHHHHHHHH
Confidence 999999999999999988864
No 39
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.25 E-value=9.9e-12 Score=106.56 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=55.8
Q ss_pred CCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEEc----cCCCCHHH-HHHHHHHhCCCCCcEEEEcCCccccc
Q 022336 218 GHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIRH----RVKKPAGT-AEEIEKHFGCQSSQLIMVDMCRIVIF 288 (299)
Q Consensus 218 GikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~h----a~KKP~p~-le~alk~lGi~PeEiamVGDrl~DI~ 288 (299)
+++++|+||+. ...++.+++.+|+. .+.. ...||.|. ++.+++++|++|++|+||||+..||.
T Consensus 102 ~~~l~I~T~~~--------~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~igDs~~di~ 173 (188)
T PRK10725 102 RRPMAVGTGSE--------SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQ 173 (188)
T ss_pred CCCEEEEcCCc--------hHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCCCHHHeEEEeccHhhHH
Confidence 47899999997 67888888988873 2211 35789884 89999999999999999999999999
Q ss_pred ccce
Q 022336 289 PGPV 292 (299)
Q Consensus 289 gAn~ 292 (299)
+|+.
T Consensus 174 aA~~ 177 (188)
T PRK10725 174 AARA 177 (188)
T ss_pred HHHH
Confidence 9875
No 40
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.25 E-value=1.2e-11 Score=114.73 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=66.9
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE----EEc----cCCCCHHH-HHHHHHHhCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV----IRH----RVKKPAGT-AEEIEKHFGC 272 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v----I~h----a~KKP~p~-le~alk~lGi 272 (299)
+.|++.+.|+.|++. |++++|+||+. ...++.+++.+|+.. +.. ..+||.+. ++.+++++|+
T Consensus 102 ~~~g~~e~L~~Lk~~-g~~l~ivTn~~--------~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~~g~ 172 (272)
T PRK13223 102 VYPGVRDTLKWLKKQ-GVEMALITNKP--------ERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKMAGV 172 (272)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEEECCc--------HHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHHhCC
Confidence 457778888889887 99999999987 567777888777632 221 34688874 8999999999
Q ss_pred CCCcEEEEcCCccccccccee
Q 022336 273 QSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~~ 293 (299)
+|++|+||||+..||.+|+.+
T Consensus 173 ~~~~~l~IGD~~~Di~aA~~a 193 (272)
T PRK13223 173 PPSQSLFVGDSRSDVLAAKAA 193 (272)
T ss_pred ChhHEEEECCCHHHHHHHHHC
Confidence 999999999999998887653
No 41
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.23 E-value=1.5e-11 Score=105.79 Aligned_cols=82 Identities=13% Similarity=0.113 Sum_probs=61.2
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc--------cCCCCH-----------HHH
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH--------RVKKPA-----------GTA 263 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h--------a~KKP~-----------p~l 263 (299)
.|++.+.|+.|++. |++++|+||+. ...++.+++.+|+..++. +..+|. ..+
T Consensus 82 ~~g~~e~l~~l~~~-g~~~~IvS~~~--------~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~ 152 (201)
T TIGR01491 82 RDYAEELVRWLKEK-GLKTAIVSGGI--------MCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAV 152 (201)
T ss_pred CccHHHHHHHHHHC-CCEEEEEeCCc--------HHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHH
Confidence 35555666778886 99999999997 678889999999754321 111221 136
Q ss_pred HHHHHHhCCCCCcEEEEcCCccccccccee
Q 022336 264 EEIEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 264 e~alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
..+++.+|+++++++||||+..|+.+|+.+
T Consensus 153 ~~~~~~~~~~~~~~i~iGDs~~D~~~a~~a 182 (201)
T TIGR01491 153 ERLKRELNPSLTETVAVGDSKNDLPMFEVA 182 (201)
T ss_pred HHHHHHhCCCHHHEEEEcCCHhHHHHHHhc
Confidence 778889999999999999999997776554
No 42
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.23 E-value=1.7e-11 Score=110.69 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=69.0
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc--------cCCCCHHH-HHHHHHHhCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH--------RVKKPAGT-AEEIEKHFGC 272 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h--------a~KKP~p~-le~alk~lGi 272 (299)
+.||+.+.|+.|+++ |++++++||+. ...++.+++.+|+..++. ...||+|. |..+++++|+
T Consensus 87 ~~pGv~~~l~~L~~~-~i~~avaS~s~--------~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv 157 (221)
T COG0637 87 PIPGVVELLEQLKAR-GIPLAVASSSP--------RRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGV 157 (221)
T ss_pred CCccHHHHHHHHHhc-CCcEEEecCCh--------HHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCC
Confidence 457888889999997 89999999997 778999999988742221 24599985 8999999999
Q ss_pred CCCcEEEEcCCcccccccce
Q 022336 273 QSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~ 292 (299)
+|++|++|+|+...|.||+-
T Consensus 158 ~P~~CvviEDs~~Gi~Aa~a 177 (221)
T COG0637 158 DPEECVVVEDSPAGIQAAKA 177 (221)
T ss_pred ChHHeEEEecchhHHHHHHH
Confidence 99999999999999988873
No 43
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.23 E-value=2.1e-11 Score=105.82 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=72.1
Q ss_pred cEEEEeccCeeecC----------CCccc-CchHHHHHHHHHHhCCCcEEEEeCCCCCCC--CCcc----HHHHHHHHHH
Q 022336 184 KGVVFDKDNTLTAP----------YSLTL-WGPLSSSIEQCKSVFGHDIAVFSNSAGLYE--YDND----ASKARKLEGK 246 (299)
Q Consensus 184 RaLVlD~DNTLT~p----------~~~~l-~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~--~d~~----~e~a~~~lk~ 246 (299)
|.+.||+||||+.+ .+..+ +|++.+.|+++.+. |+.|+||||+.|++. .... .+++..+++.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~-Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~ 79 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKK-GYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKE 79 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHT-TEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhc-CCeEEEEeCccccccccccchHHHHHHHHHHHHHH
Confidence 67899999998743 22333 46899999999997 999999999999976 2222 3467778888
Q ss_pred cCCcEEE------ccCCCCHHH-HHHHHHHhC----CCCCcEEEEcCCcc
Q 022336 247 IGIKVIR------HRVKKPAGT-AEEIEKHFG----CQSSQLIMVDMCRI 285 (299)
Q Consensus 247 LGI~vI~------ha~KKP~p~-le~alk~lG----i~PeEiamVGDrl~ 285 (299)
+|+++.. ...+||.++ ++.+++.++ ++.++++||||..-
T Consensus 80 l~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaag 129 (159)
T PF08645_consen 80 LGIPIQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAG 129 (159)
T ss_dssp CTS-EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCH
T ss_pred cCCceEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCC
Confidence 9987432 147899987 677877776 49999999999643
No 44
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.23 E-value=2.5e-11 Score=103.00 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=77.0
Q ss_pred cEEEEeccCeeecCC-------------------------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHH
Q 022336 184 KGVVFDKDNTLTAPY-------------------------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDAS 238 (299)
Q Consensus 184 RaLVlD~DNTLT~p~-------------------------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e 238 (299)
..+|+|+|+||..-. ...+.||+.+.|+.|++ +++++|+||+. .+
T Consensus 3 ~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~--~~~l~I~Ts~~--------~~ 72 (148)
T smart00577 3 KTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASE--LFELVVFTAGL--------RM 72 (148)
T ss_pred cEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHh--ccEEEEEeCCc--------HH
Confidence 579999999998310 01347899999999984 79999999998 78
Q ss_pred HHHHHHHHcCCc-EEEc--------cCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 239 KARKLEGKIGIK-VIRH--------RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 239 ~a~~~lk~LGI~-vI~h--------a~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
.++.+.+.+|+. +++. ...||. +.++++.+|++|++|+||||+..|+.+|+
T Consensus 73 ~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~--~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~ 132 (148)
T smart00577 73 YADPVLDLLDPKKYFGYRRLFRDECVFVKGK--YVKDLSLLGRDLSNVIIIDDSPDSWPFHP 132 (148)
T ss_pred HHHHHHHHhCcCCCEeeeEEECccccccCCe--EeecHHHcCCChhcEEEEECCHHHhhcCc
Confidence 888889988873 2211 235664 88899999999999999999999988885
No 45
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.22 E-value=1.5e-11 Score=108.68 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=54.6
Q ss_pred CCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc-----EEE----ccCCCCHHH-HHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 218 GHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK-----VIR----HRVKKPAGT-AEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 218 GikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~-----vI~----ha~KKP~p~-le~alk~lGi~PeEiamVGDrl~DI 287 (299)
+++++|+||+. ...++.+++.+|+. .+. .+..||.|. ++.+++.+|++|++|+||||+..||
T Consensus 101 ~~~~~ivTn~~--------~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~igDs~~di 172 (221)
T PRK10563 101 TVPMCVVSNGP--------VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENCILVDDSSAGA 172 (221)
T ss_pred CCCEEEEeCCc--------HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHeEEEeCcHhhH
Confidence 68999999987 66788888887763 121 135789884 8999999999999999999999998
Q ss_pred cccce
Q 022336 288 FPGPV 292 (299)
Q Consensus 288 ~gAn~ 292 (299)
.+|+.
T Consensus 173 ~aA~~ 177 (221)
T PRK10563 173 QSGIA 177 (221)
T ss_pred HHHHH
Confidence 88764
No 46
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.20 E-value=3.9e-11 Score=112.18 Aligned_cols=81 Identities=11% Similarity=0.162 Sum_probs=65.0
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE----E-cc--CCCCHHHHHHHHHHhCCCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI----R-HR--VKKPAGTAEEIEKHFGCQS 274 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI----~-ha--~KKP~p~le~alk~lGi~P 274 (299)
+.|++.+.|+.|++. |++++|+||+. ...+..+.+.+|+... . .. ..|| ..+..+++++|++|
T Consensus 143 l~pg~~e~L~~L~~~-gi~laIvSn~~--------~~~~~~~L~~~gl~~~F~~vi~~~~~~~k~-~~~~~~l~~~~~~p 212 (273)
T PRK13225 143 LFPGVADLLAQLRSR-SLCLGILSSNS--------RQNIEAFLQRQGLRSLFSVVQAGTPILSKR-RALSQLVAREGWQP 212 (273)
T ss_pred cCCCHHHHHHHHHHC-CCeEEEEeCCC--------HHHHHHHHHHcCChhheEEEEecCCCCCCH-HHHHHHHHHhCcCh
Confidence 457888888889887 99999999997 7888888999987422 1 11 1233 34789999999999
Q ss_pred CcEEEEcCCcccccccce
Q 022336 275 SQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 275 eEiamVGDrl~DI~gAn~ 292 (299)
++|+||||+..||.+|+.
T Consensus 213 ~~~l~IGDs~~Di~aA~~ 230 (273)
T PRK13225 213 AAVMYVGDETRDVEAARQ 230 (273)
T ss_pred hHEEEECCCHHHHHHHHH
Confidence 999999999999888765
No 47
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.18 E-value=1.7e-10 Score=106.77 Aligned_cols=103 Identities=21% Similarity=0.079 Sum_probs=80.5
Q ss_pred CCcEEEEeccCeeecCC-----------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 182 GFKGVVFDKDNTLTAPY-----------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~-----------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
..+++++|+||||.... +..+.|++.+.+++|++. |++++|+||++ ...++..++.||+.
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-g~~i~i~T~r~--------~~~~~~~l~~l~~~ 227 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAA-GYEIIVVSGRD--------GVCEEDTVEWLRQT 227 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhC-CCEEEEEeCCC--------hhhHHHHHHHHHHc
Confidence 45899999999998422 346789999999999997 99999999998 55566666666543
Q ss_pred E-E------E---------ccCCCCHHH-HHHHHHHhCC-CCCcEEEEcCCccccccccee
Q 022336 251 V-I------R---------HRVKKPAGT-AEEIEKHFGC-QSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 251 v-I------~---------ha~KKP~p~-le~alk~lGi-~PeEiamVGDrl~DI~gAn~~ 293 (299)
. . . ....||.+. ++++++.++. ++++++||||+.+||.+|..+
T Consensus 228 ~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~ 288 (300)
T PHA02530 228 DIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRI 288 (300)
T ss_pred CCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHh
Confidence 1 1 1 124588875 7788888888 689999999999999987653
No 48
>PTZ00445 p36-lilke protein; Provisional
Probab=99.18 E-value=3.7e-11 Score=109.97 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=89.4
Q ss_pred HHHHHcCCcEEEEeccCeeec-----CCCcc---------cCchHHHHHHHHHHhCCCcEEEEeCCCCCC-------CCC
Q 022336 176 AELQRRGFKGVVFDKDNTLTA-----PYSLT---------LWGPLSSSIEQCKSVFGHDIAVFSNSAGLY-------EYD 234 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~-----p~~~~---------l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~-------~~d 234 (299)
+.|++.|||+|++|+||||+. +.+.. +.|+...|+.+|++. |++|+|||=+.-.. .+-
T Consensus 36 ~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~-~I~v~VVTfSd~~~~~~~~~~~~I 114 (219)
T PTZ00445 36 DLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNS-NIKISVVTFSDKELIPSENRPRYI 114 (219)
T ss_pred HHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHC-CCeEEEEEccchhhccccCCccee
Confidence 569999999999999999997 55554 788999999999997 99999999876321 122
Q ss_pred ccHHHHHHHHHHcC----Cc--E-----EEc--------cCCCCHHH---H--HHHHHHhCCCCCcEEEEcCCccccccc
Q 022336 235 NDASKARKLEGKIG----IK--V-----IRH--------RVKKPAGT---A--EEIEKHFGCQSSQLIMVDMCRIVIFPG 290 (299)
Q Consensus 235 ~~~e~a~~~lk~LG----I~--v-----I~h--------a~KKP~p~---l--e~alk~lGi~PeEiamVGDrl~DI~gA 290 (299)
...+.++..+++-+ |. + +++ +..||.+. + +++++++|+.|+|+++|.|+.-.|.+|
T Consensus 115 sg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA 194 (219)
T PTZ00445 115 SGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNA 194 (219)
T ss_pred chHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHH
Confidence 22356666666432 21 1 111 46788874 4 899999999999999999999889888
Q ss_pred cee
Q 022336 291 PVV 293 (299)
Q Consensus 291 n~~ 293 (299)
..+
T Consensus 195 ~~l 197 (219)
T PTZ00445 195 LKE 197 (219)
T ss_pred HHC
Confidence 764
No 49
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.17 E-value=3.6e-11 Score=108.84 Aligned_cols=75 Identities=11% Similarity=0.104 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE----ccCCCCHHH-HHHHHHHhCCCC
Q 022336 204 GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFGCQS 274 (299)
Q Consensus 204 Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~----ha~KKP~p~-le~alk~lGi~P 274 (299)
|++.+.|++|++ +++++|+||+. .. .+.+|+. .+. ....||.+. ++.+++++|++|
T Consensus 116 ~gv~~~L~~L~~--~~~l~i~Tn~~--------~~-----~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~~~~~~ 180 (238)
T PRK10748 116 QATHDTLKQLAK--KWPLVAITNGN--------AQ-----PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEKLNVPI 180 (238)
T ss_pred ccHHHHHHHHHc--CCCEEEEECCC--------ch-----HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHHcCCCh
Confidence 455666777765 58999999976 11 1445542 221 134688885 889999999999
Q ss_pred CcEEEEcCCc-cccccccee
Q 022336 275 SQLIMVDMCR-IVIFPGPVV 293 (299)
Q Consensus 275 eEiamVGDrl-~DI~gAn~~ 293 (299)
++|+||||++ .||.||+.+
T Consensus 181 ~~~~~VGD~~~~Di~~A~~a 200 (238)
T PRK10748 181 GEILHVGDDLTTDVAGAIRC 200 (238)
T ss_pred hHEEEEcCCcHHHHHHHHHC
Confidence 9999999995 899998754
No 50
>PLN02954 phosphoserine phosphatase
Probab=99.13 E-value=2.7e-10 Score=100.69 Aligned_cols=80 Identities=13% Similarity=0.185 Sum_probs=61.0
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc---EEE-----c--------------cCCCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK---VIR-----H--------------RVKKP 259 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~---vI~-----h--------------a~KKP 259 (299)
+.|++.+.|+.|++. |++++|+|++. ...++.+++.+|++ ++. . ...++
T Consensus 85 l~pg~~e~l~~l~~~-g~~~~IvS~~~--------~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~ 155 (224)
T PLN02954 85 LSPGIPELVKKLRAR-GTDVYLVSGGF--------RQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGG 155 (224)
T ss_pred CCccHHHHHHHHHHC-CCEEEEECCCc--------HHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCcc
Confidence 567888888889887 99999999998 67889899999985 221 0 01223
Q ss_pred HH-HHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 260 AG-TAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 260 ~p-~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
.+ .++.+++.+|. ++++||||+..|+.+|+.
T Consensus 156 K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~ 187 (224)
T PLN02954 156 KAEAVQHIKKKHGY--KTMVMIGDGATDLEARKP 187 (224)
T ss_pred HHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhc
Confidence 33 36777777775 699999999999888765
No 51
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.10 E-value=3.2e-10 Score=104.00 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=38.5
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCC
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGL 230 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs 230 (299)
+|+++||+||||.. + ..+.|++.++|++|++. |.+++++||++|.
T Consensus 1 ~~~~~~D~DGtl~~-~-~~~i~~a~~~l~~l~~~-g~~~~~~Tnn~~r 45 (249)
T TIGR01457 1 YKGYLIDLDGTMYK-G-KERIPEAETFVHELQKR-DIPYLFVTNNSTR 45 (249)
T ss_pred CCEEEEeCCCceEc-C-CeeCcCHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 58999999999993 3 34567899999999997 9999999998754
No 52
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.08 E-value=3e-10 Score=105.02 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=77.3
Q ss_pred CCcCCCCHHHHHH--cCCc--EEEEeccCeeecCCCc------c----------------------------cCchHHHH
Q 022336 168 PDIRYIDWAELQR--RGFK--GVVFDKDNTLTAPYSL------T----------------------------LWGPLSSS 209 (299)
Q Consensus 168 ~sI~~Id~~~Lk~--~GIR--aLVlD~DNTLT~p~~~------~----------------------------l~Pgv~e~ 209 (299)
..|.||+.+.+++ .|-+ +|+||+||||+. ... . +.+++.++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~p~aViFDlDgTLlD-Ss~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~el 122 (237)
T TIGR01672 44 APIHWISVAQIENSLEGRPPIAVSFDIDDTVLF-SSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQL 122 (237)
T ss_pred CCeeEEEHHHHHHhcCCCCCeEEEEeCCCcccc-CcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHH
Confidence 3578888877764 3544 999999999982 111 0 11237788
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE----Ec----cCCCCHHHHHHHHHHhCCCCCcEEEEc
Q 022336 210 IEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI----RH----RVKKPAGTAEEIEKHFGCQSSQLIMVD 281 (299)
Q Consensus 210 L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI----~h----a~KKP~p~le~alk~lGi~PeEiamVG 281 (299)
|+.++++ |++++||||+.. ......++.+++.+|++.. .. ...||.+. .+++.+|+ ++|||
T Consensus 123 L~~l~~~-G~~i~iVTnr~~----~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~--~~l~~~~i----~i~vG 191 (237)
T TIGR01672 123 IDMHQRR-GDAIFFVTGRTP----GKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKT--QWIQDKNI----RIHYG 191 (237)
T ss_pred HHHHHHC-CCEEEEEeCCCC----CcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHH--HHHHhCCC----eEEEe
Confidence 8889987 999999999841 1125678888889998632 22 12456542 46666676 79999
Q ss_pred CCcccccccc
Q 022336 282 MCRIVIFPGP 291 (299)
Q Consensus 282 Drl~DI~gAn 291 (299)
|+..||.+|+
T Consensus 192 Ds~~DI~aAk 201 (237)
T TIGR01672 192 DSDNDITAAK 201 (237)
T ss_pred CCHHHHHHHH
Confidence 9999987653
No 53
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.08 E-value=2e-10 Score=100.62 Aligned_cols=85 Identities=14% Similarity=0.203 Sum_probs=71.4
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE----ccCCCCHHH-HHHHHHH
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKH 269 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~----ha~KKP~p~-le~alk~ 269 (299)
...+.|++.+.|++|++. |++++|+||+. ...++...+.+|+. .+. ....||.+. +.+++++
T Consensus 73 ~~~~~~g~~~~L~~L~~~-g~~~~i~Sn~~--------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 143 (205)
T TIGR01454 73 EVEVFPGVPELLAELRAD-GVGTAIATGKS--------GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRL 143 (205)
T ss_pred ccccCCCHHHHHHHHHHC-CCeEEEEeCCc--------hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHH
Confidence 457889999999999997 99999999987 66788888888873 221 134688874 8999999
Q ss_pred hCCCCCcEEEEcCCcccccccce
Q 022336 270 FGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 270 lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
+|++|++++||||+..||.+|+.
T Consensus 144 ~~~~~~~~l~igD~~~Di~aA~~ 166 (205)
T TIGR01454 144 LDVPPEDAVMVGDAVTDLASARA 166 (205)
T ss_pred cCCChhheEEEcCCHHHHHHHHH
Confidence 99999999999999999988764
No 54
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.05 E-value=2.8e-10 Score=99.16 Aligned_cols=84 Identities=15% Similarity=0.260 Sum_probs=70.5
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE----EEc----cCCCCHHH-HHHHHHHh
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV----IRH----RVKKPAGT-AEEIEKHF 270 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v----I~h----a~KKP~p~-le~alk~l 270 (299)
..+.|++.+.|+.|++. |++++|+||+. ...++.+++.+|+.. +.. ...||.|. +..+++++
T Consensus 84 ~~~~~g~~~~L~~l~~~-g~~~~i~S~~~--------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~ 154 (213)
T TIGR01449 84 TSVFPGVEATLGALRAK-GLRLGLVTNKP--------TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERL 154 (213)
T ss_pred CccCCCHHHHHHHHHHC-CCeEEEEeCCC--------HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHc
Confidence 46789999999999997 99999999987 678888889888732 211 24688874 89999999
Q ss_pred CCCCCcEEEEcCCcccccccce
Q 022336 271 GCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 271 Gi~PeEiamVGDrl~DI~gAn~ 292 (299)
|++|++++||||+..|+.+|+.
T Consensus 155 ~~~~~~~~~igDs~~d~~aa~~ 176 (213)
T TIGR01449 155 GVAPQQMVYVGDSRVDIQAARA 176 (213)
T ss_pred CCChhHeEEeCCCHHHHHHHHH
Confidence 9999999999999999887754
No 55
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.04 E-value=1.9e-10 Score=94.67 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=73.0
Q ss_pred CCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE----ccCCCCHHH-HHHHHH
Q 022336 198 YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEK 268 (299)
Q Consensus 198 ~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~----ha~KKP~p~-le~alk 268 (299)
....+.|++.++|++|++. |++++|+||.. ...++.+++.+|+. .+. .+..||.+. ++.+++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~-~~~~~i~Sn~~--------~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 144 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAK-GIPLVIVSNGS--------RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALE 144 (176)
T ss_dssp GGEEESTTHHHHHHHHHHT-TSEEEEEESSE--------HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHH
T ss_pred hccchhhhhhhhhhhcccc-cceeEEeecCC--------cccccccccccccccccccccccchhhhhhhHHHHHHHHHH
Confidence 4557889999999999987 99999999997 77888888988864 222 245788874 899999
Q ss_pred HhCCCCCcEEEEcCCccccccccee
Q 022336 269 HFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 269 ~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
.+|++|++++||||+..||.+|+.+
T Consensus 145 ~~~~~p~~~~~vgD~~~d~~~A~~~ 169 (176)
T PF13419_consen 145 KLGIPPEEILFVGDSPSDVEAAKEA 169 (176)
T ss_dssp HHTSSGGGEEEEESSHHHHHHHHHT
T ss_pred HcCCCcceEEEEeCCHHHHHHHHHc
Confidence 9999999999999999989988753
No 56
>PRK10444 UMP phosphatase; Provisional
Probab=99.03 E-value=7.8e-10 Score=102.10 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=40.1
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCC
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGL 230 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs 230 (299)
||+++||+||||. .+. .+.|++.++++.|++. |.+++++||++..
T Consensus 1 ~~~v~~DlDGtL~-~~~-~~~p~a~~~l~~L~~~-g~~~~~~Tn~~~~ 45 (248)
T PRK10444 1 IKNVICDIDGVLM-HDN-VAVPGAAEFLHRILDK-GLPLVLLTNYPSQ 45 (248)
T ss_pred CcEEEEeCCCceE-eCC-eeCccHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 7899999999999 333 7899999999999997 9999999999854
No 57
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.03 E-value=3.2e-10 Score=102.72 Aligned_cols=86 Identities=12% Similarity=-0.013 Sum_probs=70.7
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE-----EEc----cCCCCHHH-HHHHHH
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV-----IRH----RVKKPAGT-AEEIEK 268 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v-----I~h----a~KKP~p~-le~alk 268 (299)
...+.|++.+.|+.|++. |++++|+||+. ...++.+++.+|+.. +.. ...||.|. +..+++
T Consensus 97 ~~~~~pg~~e~L~~L~~~-g~~l~IvT~~~--------~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~ 167 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRAR-GIKIGSTTGYT--------REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAI 167 (253)
T ss_pred cCccCCCHHHHHHHHHHC-CCeEEEECCCc--------HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHH
Confidence 356789999999999997 99999999997 677888888776532 211 25688884 899999
Q ss_pred HhCCC-CCcEEEEcCCccccccccee
Q 022336 269 HFGCQ-SSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 269 ~lGi~-PeEiamVGDrl~DI~gAn~~ 293 (299)
++|+. |++|+||||+..||.+|+.+
T Consensus 168 ~l~~~~~~~~l~IGDs~~Di~aA~~a 193 (253)
T TIGR01422 168 ELGVYDVAACVKVGDTVPDIEEGRNA 193 (253)
T ss_pred HcCCCCchheEEECCcHHHHHHHHHC
Confidence 99995 99999999999999988753
No 58
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.03 E-value=6.6e-10 Score=96.74 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=53.7
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc---------EEEccCCCCHH-HHHHHHHHhC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK---------VIRHRVKKPAG-TAEEIEKHFG 271 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~---------vI~ha~KKP~p-~le~alk~lG 271 (299)
+.||+.+.|++|++. ++++++||.. ......+.+.+++. ++.....||.| .+..+++.+|
T Consensus 75 ~~pG~~e~L~~L~~~--~~~~i~Tn~~--------~~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp~~~~~a~~~~~ 144 (197)
T PHA02597 75 AYDDALDVINKLKED--YDFVAVTALG--------DSIDALLNRQFNLNALFPGAFSEVLMCGHDESKEKLFIKAKEKYG 144 (197)
T ss_pred CCCCHHHHHHHHHhc--CCEEEEeCCc--------cchhHHHHhhCCHHHhCCCcccEEEEeccCcccHHHHHHHHHHhC
Confidence 467777788888875 4688889876 22223233444431 11122234444 3888999999
Q ss_pred CCCCcEEEEcCCccccccccee
Q 022336 272 CQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 272 i~PeEiamVGDrl~DI~gAn~~ 293 (299)
|++++||||+..||.||+.+
T Consensus 145 --~~~~v~vgDs~~di~aA~~a 164 (197)
T PHA02597 145 --DRVVCFVDDLAHNLDAAHEA 164 (197)
T ss_pred --CCcEEEeCCCHHHHHHHHHH
Confidence 89999999999999998764
No 59
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.02 E-value=5.3e-10 Score=107.30 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=62.1
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc------------------cCCCCHH-H
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH------------------RVKKPAG-T 262 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h------------------a~KKP~p-~ 262 (299)
+.|++.+.++.|++. |++++|+|++. ...++.+.+.+|+..+.. ...||.+ .
T Consensus 182 l~pGa~elL~~Lk~~-G~~~aIvSgg~--------~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~ 252 (322)
T PRK11133 182 LMPGLTELVLKLQAL-GWKVAIASGGF--------TYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADT 252 (322)
T ss_pred CChhHHHHHHHHHHc-CCEEEEEECCc--------chhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHH
Confidence 567778888889986 99999999987 455777888888754211 1234554 4
Q ss_pred HHHHHHHhCCCCCcEEEEcCCccccccc
Q 022336 263 AEEIEKHFGCQSSQLIMVDMCRIVIFPG 290 (299)
Q Consensus 263 le~alk~lGi~PeEiamVGDrl~DI~gA 290 (299)
++++++++|+++++|++|||+.+|+.++
T Consensus 253 L~~la~~lgi~~~qtIaVGDg~NDl~m~ 280 (322)
T PRK11133 253 LTRLAQEYEIPLAQTVAIGDGANDLPMI 280 (322)
T ss_pred HHHHHHHcCCChhhEEEEECCHHHHHHH
Confidence 8899999999999999999999995544
No 60
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=6.1e-10 Score=121.17 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=67.0
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc-E----EE----ccCCCCHHH-HHHHHHHhCC
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK-V----IR----HRVKKPAGT-AEEIEKHFGC 272 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~-v----I~----ha~KKP~p~-le~alk~lGi 272 (299)
.||+.+.|+.|+++ |++++|+||+. ...++..++.+|+. . +. ....||.|. ++.+++++|+
T Consensus 163 ~pG~~elL~~Lk~~-G~~l~IvSn~~--------~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lgv 233 (1057)
T PLN02919 163 FPGALELITQCKNK-GLKVAVASSAD--------RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKILGV 233 (1057)
T ss_pred CccHHHHHHHHHhC-CCeEEEEeCCc--------HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHcCc
Confidence 56677777889887 99999999997 67888888888873 1 11 134689884 8999999999
Q ss_pred CCCcEEEEcCCccccccccee
Q 022336 273 QSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~~ 293 (299)
+|++|+||||+..||.+|+.+
T Consensus 234 ~p~e~v~IgDs~~Di~AA~~a 254 (1057)
T PLN02919 234 PTSECVVIEDALAGVQAARAA 254 (1057)
T ss_pred CcccEEEEcCCHHHHHHHHHc
Confidence 999999999999999988753
No 61
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.01 E-value=4.9e-10 Score=99.90 Aligned_cols=81 Identities=10% Similarity=0.007 Sum_probs=61.3
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc--EEE------c----cCCCCHHH-------
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK--VIR------H----RVKKPAGT------- 262 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~--vI~------h----a~KKP~p~------- 262 (299)
+.||+.+.|+.|++. |++++|+||+. ...++.+++.+ +. .+. . ...||.+.
T Consensus 75 l~pG~~e~l~~l~~~-g~~~~IvS~~~--------~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~ 144 (219)
T PRK09552 75 IREGFHEFVQFVKEN-NIPFYVVSGGM--------DFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNH 144 (219)
T ss_pred cCcCHHHHHHHHHHc-CCeEEEECCCc--------HHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCcccccccc
Confidence 467777888888886 99999999997 66777777776 42 121 1 12455542
Q ss_pred ----HHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 263 ----AEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 263 ----le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
...++++++.++++|+||||+..|+.+|+.
T Consensus 145 ~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~ 178 (219)
T PRK09552 145 CGCCKPSLIRKLSDTNDFHIVIGDSITDLEAAKQ 178 (219)
T ss_pred CCCchHHHHHHhccCCCCEEEEeCCHHHHHHHHH
Confidence 247889999999999999999999888764
No 62
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.01 E-value=4.9e-10 Score=97.56 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=67.1
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE----ccCCCCHHH-HHHHHHHhC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFG 271 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~----ha~KKP~p~-le~alk~lG 271 (299)
.+.|++.++|+.|++. |++++|+||+. . .+...++.+|+. .+. .+..||.+. +..+++++|
T Consensus 105 ~~~~g~~~~l~~L~~~-g~~~~i~Sn~~--------~-~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~ 174 (203)
T TIGR02252 105 QVYPDAIKLLKDLRER-GLILGVISNFD--------S-RLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALERAG 174 (203)
T ss_pred eeCcCHHHHHHHHHHC-CCEEEEEeCCc--------h-hHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHHcC
Confidence 5779999999999997 99999999975 2 345566777763 221 145689885 889999999
Q ss_pred CCCCcEEEEcCCc-cccccccee
Q 022336 272 CQSSQLIMVDMCR-IVIFPGPVV 293 (299)
Q Consensus 272 i~PeEiamVGDrl-~DI~gAn~~ 293 (299)
++|++++||||+. .||.+|+.+
T Consensus 175 ~~~~~~~~IgD~~~~Di~~A~~a 197 (203)
T TIGR02252 175 ISPEEALHIGDSLRNDYQGARAA 197 (203)
T ss_pred CChhHEEEECCCchHHHHHHHHc
Confidence 9999999999998 799998754
No 63
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.00 E-value=1e-09 Score=95.58 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=56.2
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc------------cC--CCCHHHHHHHHH
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH------------RV--KKPAGTAEEIEK 268 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h------------a~--KKP~p~le~alk 268 (299)
.|++.+.|+.|++. ++++|+||+. ...++.+++.+|++.++. +. .+|.+ ...+++
T Consensus 70 ~pg~~e~L~~L~~~--~~~~IvS~~~--------~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~-k~~~l~ 138 (205)
T PRK13582 70 LPGAVEFLDWLRER--FQVVILSDTF--------YEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDG-KRQAVK 138 (205)
T ss_pred CCCHHHHHHHHHhc--CCEEEEeCCc--------HHHHHHHHHHcCCchhhcceEEECCCCeEECccccccch-HHHHHH
Confidence 57777888888874 7999999998 778888999998752210 11 23332 345666
Q ss_pred HhCCCCCcEEEEcCCccccccc
Q 022336 269 HFGCQSSQLIMVDMCRIVIFPG 290 (299)
Q Consensus 269 ~lGi~PeEiamVGDrl~DI~gA 290 (299)
.++..+++++||||+.+|+.+|
T Consensus 139 ~~~~~~~~~v~iGDs~~D~~~~ 160 (205)
T PRK13582 139 ALKSLGYRVIAAGDSYNDTTML 160 (205)
T ss_pred HHHHhCCeEEEEeCCHHHHHHH
Confidence 7777889999999999996444
No 64
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.99 E-value=7.3e-10 Score=93.56 Aligned_cols=84 Identities=19% Similarity=0.233 Sum_probs=67.5
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE----ccCCCCHHH-HHHHHHHh
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHF 270 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~----ha~KKP~p~-le~alk~l 270 (299)
..+.|++.+.|+.|++. |++++|+||+. ... ..+..++|+. .+. .+..||.+. ++.+++.+
T Consensus 84 ~~~~~g~~~~l~~l~~~-g~~~~i~Tn~~--------~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~ 153 (183)
T TIGR01509 84 LKPLPGVEPLLEALRAR-GKKLALLTNSP--------RDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKL 153 (183)
T ss_pred CccCcCHHHHHHHHHHC-CCeEEEEeCCc--------hHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHc
Confidence 56789999999999997 99999999997 344 4444457762 222 245788874 89999999
Q ss_pred CCCCCcEEEEcCCccccccccee
Q 022336 271 GCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 271 Gi~PeEiamVGDrl~DI~gAn~~ 293 (299)
|++|++++||||+..||.+|+.+
T Consensus 154 ~~~~~~~~~vgD~~~di~aA~~~ 176 (183)
T TIGR01509 154 GLKPEECLFVDDSPAGIEAAKAA 176 (183)
T ss_pred CCCcceEEEEcCCHHHHHHHHHc
Confidence 99999999999999999988753
No 65
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.98 E-value=8.8e-10 Score=96.29 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=67.7
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc-------cCCCCHHH-HHHHHHHhCCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH-------RVKKPAGT-AEEIEKHFGCQ 273 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h-------a~KKP~p~-le~alk~lGi~ 273 (299)
+.++..+.|+.|++. |++++|+||+. ...++.+++.+|+..++. ...||.|. +..+++.+|++
T Consensus 107 ~~~~~~~~L~~l~~~-g~~~~i~T~~~--------~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~~~ 177 (197)
T TIGR01548 107 TLLTPKGLLRELHRA-PKGMAVVTGRP--------RKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEPLILAAKALGVE 177 (197)
T ss_pred cccCHHHHHHHHHHc-CCcEEEECCCC--------HHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHHHHHHHHHhCcC
Confidence 445568999999987 99999999997 788899999999742211 12388874 88999999999
Q ss_pred CCcEEEEcCCcccccccce
Q 022336 274 SSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 274 PeEiamVGDrl~DI~gAn~ 292 (299)
+++|+||||+..||.+|+.
T Consensus 178 ~~~~i~vGD~~~Di~aA~~ 196 (197)
T TIGR01548 178 ACHAAMVGDTVDDIITGRK 196 (197)
T ss_pred cccEEEEeCCHHHHHHHHh
Confidence 9999999999999999874
No 66
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.98 E-value=1.6e-09 Score=99.91 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=39.7
Q ss_pred CcEEEEeccCeeecCCCc---ccCchHHHHHHHHHHhCCCcEEEEeCCCCC
Q 022336 183 FKGVVFDKDNTLTAPYSL---TLWGPLSSSIEQCKSVFGHDIAVFSNSAGL 230 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~---~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs 230 (299)
+|+|+||+||||. .+.. .+.|++.+++++|++. |++++++||++..
T Consensus 1 ~k~i~~D~DGtl~-~~~~~~~~~~~~a~~al~~l~~~-G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 1 VKGVLLDISGVLY-ISDAKSGVAVPGSQEAVKRLRGA-SVKVRFVTNTTKE 49 (257)
T ss_pred CCEEEEeCCCeEE-eCCCcccCcCCCHHHHHHHHHHC-CCeEEEEECCCCC
Confidence 5899999999999 3332 2889999999999997 9999999998754
No 67
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.98 E-value=1.8e-09 Score=97.93 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=73.1
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE-EEccCCCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV-IRHRVKKP 259 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v-I~ha~KKP 259 (299)
..|++++||.||||. ....+.|++.++|++|+++ |++++|+||+.- ........++.+|++. .+...--+
T Consensus 6 ~~~~~~~~D~dG~l~--~~~~~~pga~e~L~~L~~~-G~~~~ivTN~~~------~~~~~~~~L~~~gl~~~~~~~Ii~s 76 (242)
T TIGR01459 6 NDYDVFLLDLWGVII--DGNHTYPGAVQNLNKIIAQ-GKPVYFVSNSPR------NIFSLHKTLKSLGINADLPEMIISS 76 (242)
T ss_pred hcCCEEEEecccccc--cCCccCccHHHHHHHHHHC-CCEEEEEeCCCC------ChHHHHHHHHHCCCCccccceEEcc
Confidence 579999999999998 5567899999999999997 999999999861 1222335678888864 32211111
Q ss_pred H----HHHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 260 A----GTAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 260 ~----p~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
. ..+..+++++|+++++++||||...|+
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~vGd~~~d~ 108 (242)
T TIGR01459 77 GEIAVQMILESKKRFDIRNGIIYLLGHLENDI 108 (242)
T ss_pred HHHHHHHHHhhhhhccCCCceEEEeCCcccch
Confidence 1 135566678899999999999987764
No 68
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=98.97 E-value=5.7e-10 Score=95.04 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=66.3
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE----ccCCCCHHH-HHHHHHHhC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHFG 271 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~----ha~KKP~p~-le~alk~lG 271 (299)
.+.|++.+.|+.|++. |++++|+||+. . +...++.+|+. .+. .+..||.|. +..+++++|
T Consensus 87 ~~~pg~~~~L~~L~~~-g~~~~i~s~~~--------~--~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~ 155 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKN-NIKIALASASK--------N--APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLG 155 (185)
T ss_pred ccCccHHHHHHHHHHC-CCeEEEEeCCc--------c--HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcC
Confidence 5679999999999997 99999999975 1 23456777763 222 135788885 899999999
Q ss_pred CCCCcEEEEcCCccccccccee
Q 022336 272 CQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 272 i~PeEiamVGDrl~DI~gAn~~ 293 (299)
++|++++||||+..||.+|+.+
T Consensus 156 ~~~~~~v~vgD~~~di~aA~~a 177 (185)
T TIGR01990 156 VSPSECIGIEDAQAGIEAIKAA 177 (185)
T ss_pred CCHHHeEEEecCHHHHHHHHHc
Confidence 9999999999999999998754
No 69
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.94 E-value=7.9e-10 Score=96.90 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=64.1
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHH-cCC----cEEE----ccCCCCHHH-HHHHHHHh
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGK-IGI----KVIR----HRVKKPAGT-AEEIEKHF 270 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~-LGI----~vI~----ha~KKP~p~-le~alk~l 270 (299)
.+.|++.+.|++|++. |++++|+||+. ...+..+... .++ ..+. .+..||.|. ++.+++++
T Consensus 84 ~~~~g~~e~L~~l~~~-g~~~~i~Sn~~--------~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~ 154 (199)
T PRK09456 84 ALRPEVIAIMHKLREQ-GHRVVVLSNTN--------RLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAE 154 (199)
T ss_pred ccCHHHHHHHHHHHhC-CCcEEEEcCCc--------hhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHc
Confidence 3679999999999997 99999999997 3333322222 122 2221 245799985 89999999
Q ss_pred CCCCCcEEEEcCCccccccccee
Q 022336 271 GCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 271 Gi~PeEiamVGDrl~DI~gAn~~ 293 (299)
|++|++++||||+..||.+|+.+
T Consensus 155 ~~~p~~~l~vgD~~~di~aA~~a 177 (199)
T PRK09456 155 GFSAADAVFFDDNADNIEAANAL 177 (199)
T ss_pred CCChhHeEEeCCCHHHHHHHHHc
Confidence 99999999999999999998754
No 70
>PRK09449 dUMP phosphatase; Provisional
Probab=98.92 E-value=1.6e-09 Score=95.68 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEE----ccCCCCHHH-HHHHHHHh
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIR----HRVKKPAGT-AEEIEKHF 270 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~----ha~KKP~p~-le~alk~l 270 (299)
..+.|++.+.|+.|+ . |++++|+||+. ...++..++.+|+. .+. .+..||.+. ++.+++++
T Consensus 94 ~~~~~g~~~~L~~L~-~-~~~~~i~Tn~~--------~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~~ 163 (224)
T PRK09449 94 CTPLPGAVELLNALR-G-KVKMGIITNGF--------TELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQM 163 (224)
T ss_pred CccCccHHHHHHHHH-h-CCeEEEEeCCc--------HHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHHc
Confidence 457899999999999 4 79999999987 66777778888863 221 134799885 89999999
Q ss_pred CCC-CCcEEEEcCCc-cccccccee
Q 022336 271 GCQ-SSQLIMVDMCR-IVIFPGPVV 293 (299)
Q Consensus 271 Gi~-PeEiamVGDrl-~DI~gAn~~ 293 (299)
|+. +++|+||||+. .||.+|+.+
T Consensus 164 ~~~~~~~~~~vgD~~~~Di~~A~~a 188 (224)
T PRK09449 164 GNPDRSRVLMVGDNLHSDILGGINA 188 (224)
T ss_pred CCCCcccEEEEcCCcHHHHHHHHHC
Confidence 985 58999999998 699888653
No 71
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.91 E-value=1.9e-09 Score=98.86 Aligned_cols=85 Identities=13% Similarity=-0.011 Sum_probs=68.1
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC-----cEEEc----cCCCCHHH-HHHHHHH
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI-----KVIRH----RVKKPAGT-AEEIEKH 269 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI-----~vI~h----a~KKP~p~-le~alk~ 269 (299)
..+.|++.+.|+.|++. |++++|+||+. ...+..+.+.+|+ ..+.. ...||+|. +..++++
T Consensus 100 ~~~~pg~~elL~~L~~~-g~~l~I~T~~~--------~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~~ 170 (267)
T PRK13478 100 ATPIPGVLEVIAALRAR-GIKIGSTTGYT--------REMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAIE 170 (267)
T ss_pred CCCCCCHHHHHHHHHHC-CCEEEEEcCCc--------HHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHHH
Confidence 46789999999999997 99999999997 5666666666543 22221 24689884 8999999
Q ss_pred hCCC-CCcEEEEcCCccccccccee
Q 022336 270 FGCQ-SSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 270 lGi~-PeEiamVGDrl~DI~gAn~~ 293 (299)
+|+. +++|+||||+..||.+|+.+
T Consensus 171 l~~~~~~e~l~IGDs~~Di~aA~~a 195 (267)
T PRK13478 171 LGVYDVAACVKVDDTVPGIEEGLNA 195 (267)
T ss_pred cCCCCCcceEEEcCcHHHHHHHHHC
Confidence 9996 69999999999999988754
No 72
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=98.89 E-value=5.9e-09 Score=98.32 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=43.4
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLY 231 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~ 231 (299)
..+++++||+||||. ....+.|++.++|++|+++ |++++++||++...
T Consensus 6 ~~y~~~l~DlDGvl~--~G~~~ipga~e~l~~L~~~-g~~~iflTNn~~~s 53 (269)
T COG0647 6 DKYDGFLFDLDGVLY--RGNEAIPGAAEALKRLKAA-GKPVIFLTNNSTRS 53 (269)
T ss_pred hhcCEEEEcCcCceE--eCCccCchHHHHHHHHHHc-CCeEEEEeCCCCCC
Confidence 468999999999999 6678999999999999998 99999999998543
No 73
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.88 E-value=3.1e-09 Score=91.50 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=82.3
Q ss_pred HcCCcEEEEeccCeeecC--CCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC-cEEEccC
Q 022336 180 RRGFKGVVFDKDNTLTAP--YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI-KVIRHRV 256 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p--~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI-~vI~ha~ 256 (299)
..+-..+.+.+|+++... -...+.|++.+.|++|++. |++++|+|+.. ...+..+.+.+|| .....+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~L~~~-Gi~~~i~TGD~--------~~~a~~~~~~lgi~~~~v~a~ 174 (215)
T PF00702_consen 104 SQGRTVIVLAVNLIFLGLFGLRDPLRPGAKEALQELKEA-GIKVAILTGDN--------ESTASAIAKQLGIFDSIVFAR 174 (215)
T ss_dssp HHHHHCEEEEESHEEEEEEEEEEEBHTTHHHHHHHHHHT-TEEEEEEESSE--------HHHHHHHHHHTTSCSEEEEES
T ss_pred hhCCcccceeecCeEEEEEeecCcchhhhhhhhhhhhcc-Ccceeeeeccc--------ccccccccccccccccccccc
Confidence 344555666667776632 2345789999999999997 99999999876 7899999999999 4444444
Q ss_pred C--CCHHH-HHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 257 K--KPAGT-AEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 257 K--KP~p~-le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
. ||.+. +.++++.+++++++|+||||.++|+.+++
T Consensus 175 ~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~nD~~al~ 212 (215)
T PF00702_consen 175 VIGKPEPKIFLRIIKELQVKPGEVAMVGDGVNDAPALK 212 (215)
T ss_dssp HETTTHHHHHHHHHHHHTCTGGGEEEEESSGGHHHHHH
T ss_pred ccccccchhHHHHHHHHhcCCCEEEEEccCHHHHHHHH
Confidence 5 89874 78999999999999999999999987765
No 74
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.86 E-value=1.2e-08 Score=94.44 Aligned_cols=111 Identities=17% Similarity=0.135 Sum_probs=76.1
Q ss_pred CcCCCCHHHHHH--cC--CcEEEEeccCeeec--CC-------------------------------CcccCchHHHHHH
Q 022336 169 DIRYIDWAELQR--RG--FKGVVFDKDNTLTA--PY-------------------------------SLTLWGPLSSSIE 211 (299)
Q Consensus 169 sI~~Id~~~Lk~--~G--IRaLVlD~DNTLT~--p~-------------------------------~~~l~Pgv~e~L~ 211 (299)
.|.+|+.+.+++ .| --+|+||+|+|++. |+ ...+.|++.+.|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~ 124 (237)
T PRK11009 45 PVHWVSVAQIEKSLEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLID 124 (237)
T ss_pred CeeEEEHHHhhhhccCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHH
Confidence 477787776664 22 23899999999993 21 1114466889999
Q ss_pred HHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc------EEEcc--CCCCHHHHHHHHHHhCCCCCcEEEEcCC
Q 022336 212 QCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK------VIRHR--VKKPAGTAEEIEKHFGCQSSQLIMVDMC 283 (299)
Q Consensus 212 ~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~------vI~ha--~KKP~p~le~alk~lGi~PeEiamVGDr 283 (299)
.++++ |++|++|||+.. ......++.+.+.+|++ ++..+ ..||.+. .+++.+|+ ++||||+
T Consensus 125 ~L~~~-G~~I~iVTnR~~----~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~--~~l~~~~i----~I~IGDs 193 (237)
T PRK11009 125 MHVKR-GDSIYFITGRTA----TKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKT--QWLKKKNI----RIFYGDS 193 (237)
T ss_pred HHHHC-CCeEEEEeCCCC----cccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHH--HHHHhcCC----eEEEcCC
Confidence 99887 999999999751 11245677788889983 22222 2345442 35566665 9999999
Q ss_pred ccccccc
Q 022336 284 RIVIFPG 290 (299)
Q Consensus 284 l~DI~gA 290 (299)
+.||.+|
T Consensus 194 ~~Di~aA 200 (237)
T PRK11009 194 DNDITAA 200 (237)
T ss_pred HHHHHHH
Confidence 9999888
No 75
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.86 E-value=4.7e-09 Score=92.07 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=69.9
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE------E--ccCCCCHHH-HHHHHHH
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI------R--HRVKKPAGT-AEEIEKH 269 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI------~--ha~KKP~p~-le~alk~ 269 (299)
...++|++.+.|+++++. ++++|+||.. .......++.+|+..+ . .+..||++. |+.+++.
T Consensus 97 ~~~~~~~~~~~L~~l~~~--~~l~ilTNg~--------~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~ 166 (229)
T COG1011 97 LLPDYPEALEALKELGKK--YKLGILTNGA--------RPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEK 166 (229)
T ss_pred hCccChhHHHHHHHHHhh--ccEEEEeCCC--------hHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHH
Confidence 356789999999999886 8999999986 5778888888886321 1 256799985 8999999
Q ss_pred hCCCCCcEEEEcCCccc-cccccee
Q 022336 270 FGCQSSQLIMVDMCRIV-IFPGPVV 293 (299)
Q Consensus 270 lGi~PeEiamVGDrl~D-I~gAn~~ 293 (299)
+|++|++++||||++.+ |.||+.+
T Consensus 167 ~g~~p~~~l~VgD~~~~di~gA~~~ 191 (229)
T COG1011 167 LGVPPEEALFVGDSLENDILGARAL 191 (229)
T ss_pred cCCCcceEEEECCChhhhhHHHHhc
Confidence 99999999999999988 5888764
No 76
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.85 E-value=4.9e-09 Score=91.69 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=68.9
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EEEc----cCCCCHHH-HHHHHHHh
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VIRH----RVKKPAGT-AEEIEKHF 270 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI~h----a~KKP~p~-le~alk~l 270 (299)
..+.|++.+.|++|++. ++++|+||+. ...+...++.+|+. .+.. +..||.+. +..+++++
T Consensus 96 ~~~~~g~~~~L~~l~~~--~~~~i~Sn~~--------~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~ 165 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK--FRLYIVTNGV--------RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERM 165 (224)
T ss_pred CeeCccHHHHHHHHHhc--CcEEEEeCCc--------hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHh
Confidence 46779999999999984 8999999997 67778888888873 2221 34688885 88999999
Q ss_pred -CCCCCcEEEEcCCc-cccccccee
Q 022336 271 -GCQSSQLIMVDMCR-IVIFPGPVV 293 (299)
Q Consensus 271 -Gi~PeEiamVGDrl-~DI~gAn~~ 293 (299)
|++|++++||||+. .||.+|+.+
T Consensus 166 ~~~~~~~~v~igD~~~~di~~A~~~ 190 (224)
T TIGR02254 166 PKFSKEEVLMIGDSLTADIKGGQNA 190 (224)
T ss_pred cCCCchheEEECCCcHHHHHHHHHC
Confidence 99999999999998 799988753
No 77
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.84 E-value=1.9e-09 Score=94.57 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=63.7
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC----cEEE----ccCCCCHHH-HHHHHHH
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI----KVIR----HRVKKPAGT-AEEIEKH 269 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI----~vI~----ha~KKP~p~-le~alk~ 269 (299)
...+.|++.+.|+.|++. |++++|+||+.... . ........+++ ..+. .+..||.|. ++.++++
T Consensus 92 ~~~~~~~~~~~L~~L~~~-g~~l~i~Sn~~~~~-----~-~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~ 164 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAK-GFKTACITNNFPTD-----H-SAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLER 164 (211)
T ss_pred ccccChhHHHHHHHHHHC-CCeEEEEeCCCCcc-----c-hhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHH
Confidence 346789999999999997 99999999986211 0 01111112222 2221 134699885 8999999
Q ss_pred hCCCCCcEEEEcCCccccccccee
Q 022336 270 FGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 270 lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
+|++|++|+||||+..||.+|+.+
T Consensus 165 ~g~~~~~~l~i~D~~~di~aA~~a 188 (211)
T TIGR02247 165 LGVAPEECVFLDDLGSNLKPAAAL 188 (211)
T ss_pred cCCCHHHeEEEcCCHHHHHHHHHc
Confidence 999999999999999999888754
No 78
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.81 E-value=7.2e-09 Score=97.15 Aligned_cols=84 Identities=19% Similarity=0.218 Sum_probs=67.1
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC---C----cEEE-c--cCCCCHHH-HHHHHH
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG---I----KVIR-H--RVKKPAGT-AEEIEK 268 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG---I----~vI~-h--a~KKP~p~-le~alk 268 (299)
..+.|++.+.|+.|++. |++++|+||+. ...+..+++.++ . .++. . ...||.|. +..+++
T Consensus 143 ~~l~pGv~elL~~L~~~-g~~l~IvTn~~--------~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~KP~p~~~~~a~~ 213 (286)
T PLN02779 143 LPLRPGVLRLMDEALAA-GIKVAVCSTSN--------EKAVSKIVNTLLGPERAQGLDVFAGDDVPKKKPDPDIYNLAAE 213 (286)
T ss_pred CCchhhHHHHHHHHHHC-CCeEEEEeCCC--------HHHHHHHHHHhccccccCceEEEeccccCCCCCCHHHHHHHHH
Confidence 46789999999999997 99999999987 566666665542 1 1221 1 34699884 899999
Q ss_pred HhCCCCCcEEEEcCCcccccccce
Q 022336 269 HFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 269 ~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
++|++|++++||||+..||.+|+.
T Consensus 214 ~~~~~p~~~l~IGDs~~Di~aA~~ 237 (286)
T PLN02779 214 TLGVDPSRCVVVEDSVIGLQAAKA 237 (286)
T ss_pred HhCcChHHEEEEeCCHHhHHHHHH
Confidence 999999999999999999988864
No 79
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=98.80 E-value=9.8e-09 Score=86.84 Aligned_cols=82 Identities=16% Similarity=0.065 Sum_probs=60.3
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE------cc----C----CCCH------H
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR------HR----V----KKPA------G 261 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~------ha----~----KKP~------p 261 (299)
+.|++.+.++.+++. |++++|+|++. ...++.+++.+|+..++ .. . .+|. .
T Consensus 74 ~~~g~~~~l~~l~~~-g~~~~ivS~~~--------~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~ 144 (177)
T TIGR01488 74 LRPGARELISWLKER-GIDTVIVSGGF--------DFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKG 144 (177)
T ss_pred cCcCHHHHHHHHHHC-CCEEEEECCCc--------HHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHH
Confidence 446777777788886 99999999997 67888888888875221 00 0 0111 1
Q ss_pred -HHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 262 -TAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 262 -~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
.+.++++.+|+++++++||||+..|+.+++.
T Consensus 145 ~~l~~~~~~~~~~~~~~~~iGDs~~D~~~~~~ 176 (177)
T TIGR01488 145 KVLKELLEESKITLKKIIAVGDSVNDLPMLKL 176 (177)
T ss_pred HHHHHHHHHhCCCHHHEEEEeCCHHHHHHHhc
Confidence 2566778889999999999999999877654
No 80
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.78 E-value=9.4e-09 Score=85.64 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=63.0
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHc-CC--cEEE----ccCCCCHHH-HHHHHHHhCC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI-GI--KVIR----HRVKKPAGT-AEEIEKHFGC 272 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~L-GI--~vI~----ha~KKP~p~-le~alk~lGi 272 (299)
...|++.+.|+.|++. |++++|+||+. ...+..+.+.+ +- ..+. .. .||.+. +..+++++|+
T Consensus 64 ~~~~g~~e~l~~L~~~-g~~~~i~T~~~--------~~~~~~~~~~~l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~ 133 (154)
T TIGR01549 64 AYIRGAADLLKRLKEA-GIKLGIISNGS--------LRAQKLLLRKHLGDYFDLILGSDEFG-AKPEPEIFLAALESLGL 133 (154)
T ss_pred eeccCHHHHHHHHHHC-cCeEEEEeCCc--------hHHHHHHHHHHHHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCC
Confidence 3458999999999987 99999999997 55565555553 21 1121 13 588874 8999999999
Q ss_pred CCCcEEEEcCCcccccccce
Q 022336 273 QSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 273 ~PeEiamVGDrl~DI~gAn~ 292 (299)
+| +|+||||+..||.+|+.
T Consensus 134 ~~-~~l~iGDs~~Di~aa~~ 152 (154)
T TIGR01549 134 PP-EVLHVGDNLNDIEGARN 152 (154)
T ss_pred CC-CEEEEeCCHHHHHHHHH
Confidence 99 99999999999998864
No 81
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=98.77 E-value=1.4e-08 Score=86.33 Aligned_cols=79 Identities=18% Similarity=0.131 Sum_probs=55.0
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE----EEc----------------------
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV----IRH---------------------- 254 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v----I~h---------------------- 254 (299)
.+.|++.+.|+.|++. |++++|+||+. ...++.+.+.+|+.. +..
T Consensus 72 ~l~~g~~~ll~~l~~~-g~~~~i~S~~~--------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~ 142 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEH-GIDFIVISDGN--------DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCC 142 (188)
T ss_pred CCCccHHHHHHHHHHc-CCcEEEEeCCc--------HHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccC
Confidence 3556677777788886 99999999997 667788888887632 110
Q ss_pred ----cCCCCHHHHHHHHHHhCCC-CCcEEEEcCCccccccccee
Q 022336 255 ----RVKKPAGTAEEIEKHFGCQ-SSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 255 ----a~KKP~p~le~alk~lGi~-PeEiamVGDrl~DI~gAn~~ 293 (299)
+..| + ++++++.-+ +++++||||+..|+.+|+..
T Consensus 143 ~~~~g~~K--~---~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~ 181 (188)
T TIGR01489 143 SCPCGCCK--G---KVIHKLSEPKYQHIIYIGDGVTDVCPAKLS 181 (188)
T ss_pred cCCCCCCH--H---HHHHHHHhhcCceEEEECCCcchhchHhcC
Confidence 0112 1 233333333 89999999999999998753
No 82
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=98.76 E-value=8.3e-09 Score=91.88 Aligned_cols=84 Identities=10% Similarity=-0.010 Sum_probs=60.9
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC-cEEE------c----cCCCCHHH------
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI-KVIR------H----RVKKPAGT------ 262 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI-~vI~------h----a~KKP~p~------ 262 (299)
..+.|++.+.++.|++. |++++|+|++. ...++.+++.++. ..+. . ...||.+.
T Consensus 69 ~~l~pg~~e~l~~l~~~-g~~~~IvS~~~--------~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~ 139 (214)
T TIGR03333 69 AEIREGFREFVAFINEH-GIPFYVISGGM--------DFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQN 139 (214)
T ss_pred CcccccHHHHHHHHHHC-CCeEEEECCCc--------HHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCcccccc
Confidence 34567777888889886 99999999997 6677777777642 2221 1 12456432
Q ss_pred -----HHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 263 -----AEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 263 -----le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
-..++++++..+++++||||+..|+.+|+.
T Consensus 140 ~cg~~K~~~l~~~~~~~~~~i~iGDg~~D~~~a~~ 174 (214)
T TIGR03333 140 QCGCCKPSLIRKLSEPNDYHIVIGDSVTDVEAAKQ 174 (214)
T ss_pred CCCCCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHh
Confidence 136788888899999999999999777653
No 83
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=98.75 E-value=1.7e-08 Score=92.20 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=66.3
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHc---CC----cEEE--ccCCCCHHH-HHHHHHH
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI---GI----KVIR--HRVKKPAGT-AEEIEKH 269 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~L---GI----~vI~--ha~KKP~p~-le~alk~ 269 (299)
..++|++.+.|++|+++ |++++|+||+. ....+.+.+++ ++ ..++ ....||.+. +..++++
T Consensus 94 ~~lypgv~e~L~~Lk~~-G~~l~I~Sn~s--------~~~~~~~~~~~~~~~L~~~f~~~fd~~~g~KP~p~~y~~i~~~ 164 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQL-GLRLAVYSSGS--------VPAQKLLFGHSDAGNLTPYFSGYFDTTVGLKTEAQSYVKIAGQ 164 (220)
T ss_pred cCcCcCHHHHHHHHHHC-CCEEEEEeCCC--------HHHHHHHHhhccccchhhhcceEEEeCcccCCCHHHHHHHHHH
Confidence 45789999999999997 99999999987 45555555553 22 1111 134688874 8999999
Q ss_pred hCCCCCcEEEEcCCcccccccce
Q 022336 270 FGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 270 lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
+|++|++++||||+..||.||+.
T Consensus 165 lgv~p~e~lfVgDs~~Di~AA~~ 187 (220)
T TIGR01691 165 LGSPPREILFLSDIINELDAARK 187 (220)
T ss_pred hCcChhHEEEEeCCHHHHHHHHH
Confidence 99999999999999999988865
No 84
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.74 E-value=1.2e-08 Score=87.98 Aligned_cols=83 Identities=19% Similarity=0.207 Sum_probs=67.3
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE----EEc----cC----CCCHHH-HHH
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV----IRH----RV----KKPAGT-AEE 265 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v----I~h----a~----KKP~p~-le~ 265 (299)
...+.+++.++|++|+ .+++|+||+. ...+...++.+|+.. +.. .. .||.|. ++.
T Consensus 82 ~~~~~~g~~~~L~~L~----~~~~i~Tn~~--------~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~ 149 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP----GRKIIFTNGD--------RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEK 149 (184)
T ss_pred hCCCCHHHHHHHHhCC----CCEEEEeCCC--------HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHH
Confidence 3457899999999885 4799999997 678888889888742 211 22 388874 899
Q ss_pred HHHHhCCCCCcEEEEcCCccccccccee
Q 022336 266 IEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 266 alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
+++++|++|++++||||+..||.+|+.+
T Consensus 150 ~~~~~~~~~~~~l~vgD~~~di~aA~~~ 177 (184)
T TIGR01993 150 ALREAGVDPERAIFFDDSARNIAAAKAL 177 (184)
T ss_pred HHHHhCCCccceEEEeCCHHHHHHHHHc
Confidence 9999999999999999999999998754
No 85
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=98.72 E-value=8.2e-09 Score=87.73 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=63.0
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE--------ccCCCCHHH-HHHHHHH
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR--------HRVKKPAGT-AEEIEKH 269 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~--------ha~KKP~p~-le~alk~ 269 (299)
...+.|++.+.|+ +++|+||+. ...+....+.+|+..++ .+..||.|. ++.++++
T Consensus 88 ~~~~~~g~~~~L~--------~~~i~Tn~~--------~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~ 151 (175)
T TIGR01493 88 NLPPWPDSAAALA--------RVAILSNAS--------HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDT 151 (175)
T ss_pred cCCCCCchHHHHH--------HHhhhhCCC--------HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHH
Confidence 3457899988887 378999997 67777788888874211 145799984 8999999
Q ss_pred hCCCCCcEEEEcCCcccccccce
Q 022336 270 FGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 270 lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
+|++|++|+||||+..||.||+.
T Consensus 152 ~~~~p~~~l~vgD~~~Di~~A~~ 174 (175)
T TIGR01493 152 VGLPPDRVLMVAAHQWDLIGARK 174 (175)
T ss_pred HCCCHHHeEeEecChhhHHHHhc
Confidence 99999999999999999999974
No 86
>PLN02811 hydrolase
Probab=98.65 E-value=5.3e-08 Score=86.80 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=62.5
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHH-HHHHHcCC----cEEE--c----cCCCCHHH-HHHHH
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKAR-KLEGKIGI----KVIR--H----RVKKPAGT-AEEIE 267 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~-~~lk~LGI----~vI~--h----a~KKP~p~-le~al 267 (299)
..+.|++.+.|+.|++. |++++|+||+. ...+. .+.+..++ ..+. . ...||.|. +..++
T Consensus 77 ~~l~~gv~e~l~~L~~~-g~~~~i~S~~~--------~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~ 147 (220)
T PLN02811 77 SDLMPGAERLVRHLHAK-GIPIAIATGSH--------KRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAA 147 (220)
T ss_pred CCCCccHHHHHHHHHHC-CCcEEEEeCCc--------hhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHH
Confidence 45789999999999997 99999999986 22222 22222222 1221 1 23688884 88999
Q ss_pred HHhC---CCCCcEEEEcCCcccccccce
Q 022336 268 KHFG---CQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 268 k~lG---i~PeEiamVGDrl~DI~gAn~ 292 (299)
+++| ++|++|+||||+..||.+|+.
T Consensus 148 ~~~~~~~~~~~~~v~IgDs~~di~aA~~ 175 (220)
T PLN02811 148 RRFEDGPVDPGKVLVFEDAPSGVEAAKN 175 (220)
T ss_pred HHhCCCCCCccceEEEeccHhhHHHHHH
Confidence 9996 999999999999999988864
No 87
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.60 E-value=1.3e-07 Score=85.69 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=62.4
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc-----------------cCCCCHH-
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH-----------------RVKKPAG- 261 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h-----------------a~KKP~p- 261 (299)
..+.|++.+.++.+++. |.+++|+|.+. ...++.+.+.+|+++... -+.....
T Consensus 76 ~~l~~ga~elv~~lk~~-G~~v~iiSgg~--------~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~ 146 (212)
T COG0560 76 LRLTPGAEELVAALKAA-GAKVVIISGGF--------TFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKA 146 (212)
T ss_pred CcCCccHHHHHHHHHHC-CCEEEEEcCCh--------HHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHH
Confidence 45678888888889997 99999999998 789999999999863210 1122222
Q ss_pred -HHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 262 -TAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 262 -~le~alk~lGi~PeEiamVGDrl~D 286 (299)
.+.++++.+|+++++++.|||+.+|
T Consensus 147 ~~l~~~~~~~g~~~~~~~a~gDs~nD 172 (212)
T COG0560 147 KALRELAAELGIPLEETVAYGDSAND 172 (212)
T ss_pred HHHHHHHHHcCCCHHHeEEEcCchhh
Confidence 3778899999999999999999999
No 88
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.60 E-value=2.1e-07 Score=75.11 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=56.7
Q ss_pred EEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHHHH
Q 022336 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEE 265 (299)
Q Consensus 186 LVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~le~ 265 (299)
++||+||||. ....+.|++.++++.|++. |.+++++||+++.. .+.....++.+|+++-....--|......
T Consensus 1 ~l~D~dGvl~--~g~~~ipga~e~l~~L~~~-g~~~~~lTNns~~s-----~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~ 72 (101)
T PF13344_consen 1 FLFDLDGVLY--NGNEPIPGAVEALDALRER-GKPVVFLTNNSSRS-----REEYAKKLKKLGIPVDEDEIITSGMAAAE 72 (101)
T ss_dssp EEEESTTTSE--ETTEE-TTHHHHHHHHHHT-TSEEEEEES-SSS------HHHHHHHHHHTTTT--GGGEEEHHHHHHH
T ss_pred CEEeCccEeE--eCCCcCcCHHHHHHHHHHc-CCCEEEEeCCCCCC-----HHHHHHHHHhcCcCCCcCEEEChHHHHHH
Confidence 6899999999 4567899999999999998 99999999998432 34445555789986322111112122333
Q ss_pred HHHHhCCCCCcEEEEcCC
Q 022336 266 IEKHFGCQSSQLIMVDMC 283 (299)
Q Consensus 266 alk~lGi~PeEiamVGDr 283 (299)
.+++. -....+.+||-.
T Consensus 73 ~l~~~-~~~~~v~vlG~~ 89 (101)
T PF13344_consen 73 YLKEH-KGGKKVYVLGSD 89 (101)
T ss_dssp HHHHH-TTSSEEEEES-H
T ss_pred HHHhc-CCCCEEEEEcCH
Confidence 34432 346677777753
No 89
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.60 E-value=2.1e-07 Score=87.62 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCcEEEEeccCeeec-------------CC------------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCcc
Q 022336 182 GFKGVVFDKDNTLTA-------------PY------------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDND 236 (299)
Q Consensus 182 GIRaLVlD~DNTLT~-------------p~------------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~ 236 (299)
+-.+||||+|+|+.. ++ ...+.||+.+.|+.+++. |++++|+||+.. ..
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~-G~~v~iVTnR~~-----~~ 147 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSK-GVKIFYVSNRSE-----KE 147 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHC-CCeEEEEeCCCc-----ch
Confidence 457999999999851 11 112468999999999997 999999999872 12
Q ss_pred HHHHHHHHHHcCCcE-----EE-ccCCCCHH-HHHHHHHHhCCCCCcEEEEcCCcccccc
Q 022336 237 ASKARKLEGKIGIKV-----IR-HRVKKPAG-TAEEIEKHFGCQSSQLIMVDMCRIVIFP 289 (299)
Q Consensus 237 ~e~a~~~lk~LGI~v-----I~-ha~KKP~p-~le~alk~lGi~PeEiamVGDrl~DI~g 289 (299)
.+.+...++.+|++. +. ....++.+ ..+.+.+.+++ ++||||++.|+.+
T Consensus 148 ~~~T~~~Lkk~Gi~~~~~d~lllr~~~~~K~~rr~~I~~~y~I----vl~vGD~~~Df~~ 203 (266)
T TIGR01533 148 KAATLKNLKRFGFPQADEEHLLLKKDKSSKESRRQKVQKDYEI----VLLFGDNLLDFDD 203 (266)
T ss_pred HHHHHHHHHHcCcCCCCcceEEeCCCCCCcHHHHHHHHhcCCE----EEEECCCHHHhhh
Confidence 345566777888853 21 11222223 35666666666 9999999999755
No 90
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.55 E-value=2.5e-07 Score=85.94 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=61.5
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCC-C----cc-HHHHHHHHHHcCCcEEEccCCCCHHH-HHHHHHHhCCC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEY-D----ND-ASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQ 273 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~-d----~~-~e~a~~~lk~LGI~vI~ha~KKP~p~-le~alk~lGi~ 273 (299)
..++++.++++.|++. |. ++|+||+.-.... + .. ...+..+....|...+. ..||.+. ++.+++++|++
T Consensus 143 ~~y~~i~~~l~~L~~~-g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~--~gKP~p~~~~~~~~~~~~~ 218 (279)
T TIGR01452 143 FSYAKLREACAHLREP-GC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLV--VGKPSPYMFECITENFSID 218 (279)
T ss_pred CCHHHHHHHHHHHhcC-CC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceec--cCCCCHHHHHHHHHHhCCC
Confidence 3468999999999875 76 8999998632110 0 00 12233344434544332 3588874 88999999999
Q ss_pred CCcEEEEcCCc-cccccccee
Q 022336 274 SSQLIMVDMCR-IVIFPGPVV 293 (299)
Q Consensus 274 PeEiamVGDrl-~DI~gAn~~ 293 (299)
|++++||||++ .||.+|+.+
T Consensus 219 ~~~~lmIGD~~~tDI~~A~~a 239 (279)
T TIGR01452 219 PARTLMVGDRLETDILFGHRC 239 (279)
T ss_pred hhhEEEECCChHHHHHHHHHc
Confidence 99999999996 889988653
No 91
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.54 E-value=4.5e-07 Score=84.26 Aligned_cols=94 Identities=11% Similarity=0.107 Sum_probs=61.6
Q ss_pred CCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHH
Q 022336 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAG 261 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p 261 (299)
.|++++||+||||. ....+.|++.++|++|++. |++++++||++.. ........++.+|+..-....--+..
T Consensus 1 ~~~~~~~D~DGtl~--~~~~~~~ga~e~l~~L~~~-g~~~~~~Tnns~~-----~~~~~~~~l~~~G~~~~~~~i~ts~~ 72 (279)
T TIGR01452 1 RAQGFIFDCDGVLW--LGERVVPGAPELLDRLARA-GKAALFVTNNSTK-----SRAEYALKFARLGFNGLAEQLFSSAL 72 (279)
T ss_pred CccEEEEeCCCceE--cCCeeCcCHHHHHHHHHHC-CCeEEEEeCCCCC-----CHHHHHHHHHHcCCCCChhhEecHHH
Confidence 48999999999998 3446788899999999997 9999999998621 12333344566887532111111111
Q ss_pred HHHHHHHHhCCCCCcEEEEcCC
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMC 283 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDr 283 (299)
.....++..+.....+.+||+.
T Consensus 73 ~~~~~l~~~~~~~~~v~~iG~~ 94 (279)
T TIGR01452 73 CAARLLRQPPDAPKAVYVIGEE 94 (279)
T ss_pred HHHHHHHhhCcCCCEEEEEcCH
Confidence 2334445444445678889985
No 92
>PLN02645 phosphoglycolate phosphatase
Probab=98.54 E-value=4.3e-07 Score=86.04 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=62.6
Q ss_pred CCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHH
Q 022336 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAG 261 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p 261 (299)
.+++++||+||||.. + ..+.|++.++|++|++. |++++++||++... .......++.+|+.+.....-.+..
T Consensus 27 ~~~~~~~D~DGtl~~-~-~~~~~ga~e~l~~lr~~-g~~~~~~TN~~~~~-----~~~~~~~l~~lGi~~~~~~I~ts~~ 98 (311)
T PLN02645 27 SVETFIFDCDGVIWK-G-DKLIEGVPETLDMLRSM-GKKLVFVTNNSTKS-----RAQYGKKFESLGLNVTEEEIFSSSF 98 (311)
T ss_pred hCCEEEEeCcCCeEe-C-CccCcCHHHHHHHHHHC-CCEEEEEeCCCCCC-----HHHHHHHHHHCCCCCChhhEeehHH
Confidence 699999999999993 3 36789999999999997 99999999997321 3333334467887533222222222
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCc
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCR 284 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl 284 (299)
.....++..+....+.+||++..
T Consensus 99 ~~~~~l~~~~~~~~~~V~viG~~ 121 (311)
T PLN02645 99 AAAAYLKSINFPKDKKVYVIGEE 121 (311)
T ss_pred HHHHHHHhhccCCCCEEEEEcCH
Confidence 34455555555444445555543
No 93
>PRK08238 hypothetical protein; Validated
Probab=98.54 E-value=2e-07 Score=94.05 Aligned_cols=79 Identities=11% Similarity=0.107 Sum_probs=60.9
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC-cEEEc----cCCCCHHHHHHHHHHhCCCCCc
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI-KVIRH----RVKKPAGTAEEIEKHFGCQSSQ 276 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI-~vI~h----a~KKP~p~le~alk~lGi~PeE 276 (299)
+.|++.+.+++++++ |++++|+|++. ...++.+.+++|+ +.+.. ...||.+..+.+.+.++ .++
T Consensus 73 ~~pga~e~L~~lk~~-G~~v~LaTas~--------~~~a~~i~~~lGlFd~Vigsd~~~~~kg~~K~~~l~~~l~--~~~ 141 (479)
T PRK08238 73 YNEEVLDYLRAERAA-GRKLVLATASD--------ERLAQAVAAHLGLFDGVFASDGTTNLKGAAKAAALVEAFG--ERG 141 (479)
T ss_pred CChhHHHHHHHHHHC-CCEEEEEeCCC--------HHHHHHHHHHcCCCCEEEeCCCccccCCchHHHHHHHHhC--ccC
Confidence 568999999999997 99999999998 7889999999996 44432 13455544555666666 466
Q ss_pred EEEEcCCcccccccc
Q 022336 277 LIMVDMCRIVIFPGP 291 (299)
Q Consensus 277 iamVGDrl~DI~gAn 291 (299)
++||||+..|+.+++
T Consensus 142 ~~yvGDS~~Dlp~~~ 156 (479)
T PRK08238 142 FDYAGNSAADLPVWA 156 (479)
T ss_pred eeEecCCHHHHHHHH
Confidence 999999999976554
No 94
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.53 E-value=3.2e-07 Score=93.30 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=83.1
Q ss_pred HHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCC-CcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 177 ELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFG-HDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fG-ikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
.....|.+.+.+..||++.. .....+.|++.+.+++|++. | ++++|+||.. ...++.+++++|+..++
T Consensus 358 ~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~-g~i~v~ivTgd~--------~~~a~~i~~~lgi~~~f 428 (556)
T TIGR01525 358 EGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRA-GGIKLVMLTGDN--------RSAAEAVAAELGIDEVH 428 (556)
T ss_pred HHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHc-CCCeEEEEeCCC--------HHHHHHHHHHhCCCeee
Confidence 34568999999999998763 23456899999999999997 9 9999999998 78999999999997666
Q ss_pred ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 254 HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 254 ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
... .|... .+++++++..+++++||||+.+|+.+++.
T Consensus 429 ~~~-~p~~K-~~~v~~l~~~~~~v~~vGDg~nD~~al~~ 465 (556)
T TIGR01525 429 AEL-LPEDK-LAIVKELQEEGGVVAMVGDGINDAPALAA 465 (556)
T ss_pred ccC-CHHHH-HHHHHHHHHcCCEEEEEECChhHHHHHhh
Confidence 543 33322 24566666678899999999999766543
No 95
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=98.51 E-value=3.9e-07 Score=80.71 Aligned_cols=96 Identities=23% Similarity=0.254 Sum_probs=62.7
Q ss_pred CcEEEEeccCeeecCC------------------------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHH
Q 022336 183 FKGVVFDKDNTLTAPY------------------------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDAS 238 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~------------------------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e 238 (299)
-|+||||+|.||.+++ ...++|++.+.|++|++. |++++++|-.. ..+
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~-gv~lavASRt~-------~P~ 74 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKER-GVKLAVASRTD-------EPD 74 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHC-T--EEEEE--S--------HH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHC-CCEEEEEECCC-------ChH
Confidence 3799999999998532 123679999999999997 99999999654 157
Q ss_pred HHHHHHHHcCCc----------EEEc----cCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 239 KARKLEGKIGIK----------VIRH----RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 239 ~a~~~lk~LGI~----------vI~h----a~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
.|+.+++.|++. .++. ........+.++.+..|++.++++++.|...-
T Consensus 75 ~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~tgI~y~eMlFFDDe~~N 136 (169)
T PF12689_consen 75 WARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRKTGIPYEEMLFFDDESRN 136 (169)
T ss_dssp HHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHHH---GGGEEEEES-HHH
T ss_pred HHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHhcCCChhHEEEecCchhc
Confidence 899999999887 2222 11122235889999999999999999997654
No 96
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.50 E-value=3.8e-07 Score=93.22 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=80.3
Q ss_pred HHHcCCcEEEEeccCeeecCC--CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEcc
Q 022336 178 LQRRGFKGVVFDKDNTLTAPY--SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHR 255 (299)
Q Consensus 178 Lk~~GIRaLVlD~DNTLT~p~--~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha 255 (299)
+.+.|.+.+.++.||++...- ...+.|++.+.+++|++. |++++|+||.. ...++.+++++|++++. .
T Consensus 380 ~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~-Gi~v~ilSgd~--------~~~a~~ia~~lgi~~~~-~ 449 (562)
T TIGR01511 380 KAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRR-GIEPVMLTGDN--------RKTAKAVAKELGINVRA-E 449 (562)
T ss_pred hhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHc-CCeEEEEcCCC--------HHHHHHHHHHcCCcEEc-c
Confidence 346789999999999987432 456889999999999997 99999999997 78999999999997432 2
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 256 VKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 256 ~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
-+|.+. .+++++++.++++++||||+.+|+.+++
T Consensus 450 -~~p~~K-~~~v~~l~~~~~~v~~VGDg~nD~~al~ 483 (562)
T TIGR01511 450 -VLPDDK-AALIKELQEKGRVVAMVGDGINDAPALA 483 (562)
T ss_pred -CChHHH-HHHHHHHHHcCCEEEEEeCCCccHHHHh
Confidence 345433 2345556667899999999999965544
No 97
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=98.49 E-value=2.5e-07 Score=83.21 Aligned_cols=78 Identities=8% Similarity=-0.052 Sum_probs=55.8
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc--------c-------CCCCHHH-HH
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH--------R-------VKKPAGT-AE 264 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h--------a-------~KKP~p~-le 264 (299)
.+.|++.+.++.+++. | +++|||++. ...++.+++.+|++.++. + ..|+.+. ..
T Consensus 68 ~l~pga~ell~~lk~~-~-~~~IVS~~~--------~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l 137 (203)
T TIGR02137 68 KPLEGAVEFVDWLRER-F-QVVILSDTF--------YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSV 137 (203)
T ss_pred CCCccHHHHHHHHHhC-C-eEEEEeCCh--------HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHH
Confidence 4678888999999985 5 999999997 778999999999863321 1 2344432 33
Q ss_pred HHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 265 EIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 265 ~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
+.++..| .++++|||+.+|+..+.
T Consensus 138 ~~l~~~~---~~~v~vGDs~nDl~ml~ 161 (203)
T TIGR02137 138 IAFKSLY---YRVIAAGDSYNDTTMLS 161 (203)
T ss_pred HHHHhhC---CCEEEEeCCHHHHHHHH
Confidence 3445555 38999999999965443
No 98
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.49 E-value=1.8e-07 Score=81.06 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=71.9
Q ss_pred cEEEEeccCeeecCCC-----------------------cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHH
Q 022336 184 KGVVFDKDNTLTAPYS-----------------------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKA 240 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~-----------------------~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a 240 (299)
+.||+|+|+||..... +..-|++.++|++|.+. +.|+|.|++. ...|
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~--yei~I~Ts~~--------~~yA 71 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW--YELVIFTASL--------EEYA 71 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc--CEEEEEcCCc--------HHHH
Confidence 5799999999972111 11358999999999874 8999999997 7889
Q ss_pred HHHHHHcCCc--EE-----EccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccccccc
Q 022336 241 RKLEGKIGIK--VI-----RHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFPG 290 (299)
Q Consensus 241 ~~~lk~LGI~--vI-----~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~gA 290 (299)
+.+++.++.. ++ +..+.+..+.+.+.+..+|.++++++||||+..++.++
T Consensus 72 ~~il~~ldp~~~~f~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~ 128 (162)
T TIGR02251 72 DPVLDILDRGGKVISRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQ 128 (162)
T ss_pred HHHHHHHCcCCCEEeEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccC
Confidence 9999998853 22 11221111125567788899999999999999997765
No 99
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.45 E-value=2.4e-07 Score=91.89 Aligned_cols=81 Identities=12% Similarity=0.055 Sum_probs=63.7
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE----EEc-----cCCCCHHHHHHHHHHhC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV----IRH-----RVKKPAGTAEEIEKHFG 271 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v----I~h-----a~KKP~p~le~alk~lG 271 (299)
.+.|++.+.|+.|++. |++++|+||+. .+.+..+++.+|+.. +.. ..+||. .+..+++++
T Consensus 330 ~l~pG~~e~L~~Lk~~-g~~l~IvS~~~--------~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP~-~~~~al~~l- 398 (459)
T PRK06698 330 ALYPNVKEIFTYIKEN-NCSIYIASNGL--------TEYLRAIVSYYDLDQWVTETFSIEQINSLNKSD-LVKSILNKY- 398 (459)
T ss_pred CcCCCHHHHHHHHHHC-CCeEEEEeCCc--------hHHHHHHHHHCCcHhhcceeEecCCCCCCCCcH-HHHHHHHhc-
Confidence 4678999999999997 99999999998 788888899988742 211 123553 367777765
Q ss_pred CCCCcEEEEcCCccccccccee
Q 022336 272 CQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 272 i~PeEiamVGDrl~DI~gAn~~ 293 (299)
+|++|+||||+..||.+|+.+
T Consensus 399 -~~~~~v~VGDs~~Di~aAk~A 419 (459)
T PRK06698 399 -DIKEAAVVGDRLSDINAAKDN 419 (459)
T ss_pred -CcceEEEEeCCHHHHHHHHHC
Confidence 479999999999999988754
No 100
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.39 E-value=1.2e-06 Score=80.97 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=41.0
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaG 229 (299)
++++++++|+-|||. .+....|+..|++++|+.+ +.+|=.|||..+
T Consensus 5 ~~v~gvLlDlSGtLh--~e~~avpga~eAl~rLr~~-~~kVkFvTNttk 50 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLH--IEDAAVPGAVEALKRLRDQ-HVKVKFVTNTTK 50 (262)
T ss_pred cccceEEEeccceEe--cccccCCCHHHHHHHHHhc-CceEEEEecCcc
Confidence 689999999999998 5556889999999999986 899999999874
No 101
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.38 E-value=4.6e-07 Score=84.30 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=67.6
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE-E-------EccCCCCHHH-HHHHHHH
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV-I-------RHRVKKPAGT-AEEIEKH 269 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v-I-------~ha~KKP~p~-le~alk~ 269 (299)
...+.++..+.+++|+++ |..|+|+||-. .+.+.++..+|+.. + .-+..||+|. |+.++++
T Consensus 111 ~~~~~~~~~~~lq~lR~~-g~~l~iisN~d---------~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~ 180 (237)
T KOG3085|consen 111 AWKYLDGMQELLQKLRKK-GTILGIISNFD---------DRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALER 180 (237)
T ss_pred CceeccHHHHHHHHHHhC-CeEEEEecCCc---------HHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHH
Confidence 345567777999999998 99999999975 56667777777631 1 1257899986 8999999
Q ss_pred hCCCCCcEEEEcCCccc-ccccce
Q 022336 270 FGCQSSQLIMVDMCRIV-IFPGPV 292 (299)
Q Consensus 270 lGi~PeEiamVGDrl~D-I~gAn~ 292 (299)
+|++|+||++|||.+-. ++||+-
T Consensus 181 l~v~Pee~vhIgD~l~nD~~gA~~ 204 (237)
T KOG3085|consen 181 LGVKPEECVHIGDLLENDYEGARN 204 (237)
T ss_pred hCCChHHeEEecCccccccHhHHH
Confidence 99999999999999887 999864
No 102
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.32 E-value=1.4e-06 Score=88.52 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=81.6
Q ss_pred HHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCC-cEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 177 ELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGi-kVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
.+...|.+.+.+-+|+++.. .....+.|++.+.+++|++. |+ +++|+||+. ...++.+++++|++.++
T Consensus 336 ~~~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~-Gi~~v~vvTgd~--------~~~a~~i~~~lgi~~~f 406 (536)
T TIGR01512 336 RPESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKAL-GIEKVVMLTGDR--------RAVAERVARELGIDEVH 406 (536)
T ss_pred chhhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHc-CCCcEEEEcCCC--------HHHHHHHHHHcCChhhh
Confidence 34457778888899988762 23456889999999999997 99 999999997 78999999999997555
Q ss_pred ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 254 HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 254 ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
... .|... .+++++++.+.++++||||+.+|+.+++
T Consensus 407 ~~~-~p~~K-~~~i~~l~~~~~~v~~vGDg~nD~~al~ 442 (536)
T TIGR01512 407 AEL-LPEDK-LEIVKELREKYGPVAMVGDGINDAPALA 442 (536)
T ss_pred hcc-CcHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 432 34432 3567777778899999999999966554
No 103
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.25 E-value=2.1e-06 Score=82.38 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=74.4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhcCCCC--cCCccccCCcCCCCH---HHHHHcCCcEEEEeccCeeecCCC-ccc-Cc
Q 022336 132 SQLKAALGQRINVEGIVSSTVVFAKDRHL--ALPHVTVPDIRYIDW---AELQRRGFKGVVFDKDNTLTAPYS-LTL-WG 204 (299)
Q Consensus 132 ~~~~~~~~q~~N~~gi~~~~~~~~~~p~l--l~P~~~v~sI~~Id~---~~Lk~~GIRaLVlD~DNTLT~p~~-~~l-~P 204 (299)
+++|..+-..+..+....++-. -.+|.. ++=.|+|.++.++.- +.+-=.-.++|+||+||||..... ..+ .|
T Consensus 71 ~~~R~~~k~~~k~~~lGh~~vl-~~~~~~y~~L~EW~v~~~~~v~~l~~~~~~~~~~kvIvFDLDgTLi~~~~~v~irdP 149 (301)
T TIGR01684 71 VDLRAHLKTAFKTSYFGHTFVL-FHKPAMYACLNEWYVFELEEIYNLNLPSKVFEPPHVVVFDLDSTLITDEEPVRIRDP 149 (301)
T ss_pred HHHHHHHHHHhcccccceEEEe-cCCccHHHHHHHHHcccHhhhhhccccccccccceEEEEecCCCCcCCCCccccCCH
Confidence 5566666666666666555442 222211 234556655544332 222223468999999999995433 224 59
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 205 PLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 205 gv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
++.++|++|++. |++++|+||+. .+.+...++.+|+.
T Consensus 150 gV~EaL~~Lkek-GikLaIaTS~~--------Re~v~~~L~~lGLd 186 (301)
T TIGR01684 150 RIYDSLTELKKR-GCILVLWSYGD--------RDHVVESMRKVKLD 186 (301)
T ss_pred HHHHHHHHHHHC-CCEEEEEECCC--------HHHHHHHHHHcCCC
Confidence 999999999998 99999999997 77888899999986
No 104
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.20 E-value=6.2e-06 Score=87.85 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=83.7
Q ss_pred HHHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 176 AELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
+.+.+.|.+.+.+-.||++.. .-...+.|++.+.+++|++. |++++++|+.. ...++.+++++|+..++
T Consensus 623 ~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~-gi~v~~~Tgd~--------~~~a~~ia~~lgi~~~~ 693 (834)
T PRK10671 623 TAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKA-GYRLVMLTGDN--------PTTANAIAKEAGIDEVI 693 (834)
T ss_pred HHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHC-CCeEEEEcCCC--------HHHHHHHHHHcCCCEEE
Confidence 345678999999999998762 23556789999999999997 99999999987 77889999999997665
Q ss_pred ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 254 HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 254 ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
... .|... .++++.++.++++++||||+++|+.+++
T Consensus 694 ~~~-~p~~K-~~~i~~l~~~~~~v~~vGDg~nD~~al~ 729 (834)
T PRK10671 694 AGV-LPDGK-AEAIKRLQSQGRQVAMVGDGINDAPALA 729 (834)
T ss_pred eCC-CHHHH-HHHHHHHhhcCCEEEEEeCCHHHHHHHH
Confidence 543 44432 3577888888999999999999965544
No 105
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.19 E-value=2.2e-06 Score=79.42 Aligned_cols=65 Identities=23% Similarity=0.191 Sum_probs=54.7
Q ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc--------------cCCCCHH-HHHHHHHHhCCC-CCcEEEEcCCc
Q 022336 221 IAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH--------------RVKKPAG-TAEEIEKHFGCQ-SSQLIMVDMCR 284 (299)
Q Consensus 221 VaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h--------------a~KKP~p-~le~alk~lGi~-PeEiamVGDrl 284 (299)
.+|+||.. ...|.++++.|||..++. -+-||.+ .++.+++..|+. |.+++++.|+.
T Consensus 117 k~~FTNa~--------k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS~ 188 (244)
T KOG3109|consen 117 KWIFTNAY--------KVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDSE 188 (244)
T ss_pred EEEecCCc--------HHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhCCCCcCceEEEcCch
Confidence 78999987 789999999999864332 1347876 599999999998 99999999999
Q ss_pred cccccccee
Q 022336 285 IVIFPGPVV 293 (299)
Q Consensus 285 ~DI~gAn~~ 293 (299)
..|.+|+.+
T Consensus 189 ~NI~~ak~v 197 (244)
T KOG3109|consen 189 RNIQTAKEV 197 (244)
T ss_pred hhHHHHHhc
Confidence 999999865
No 106
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.18 E-value=3.5e-06 Score=74.56 Aligned_cols=57 Identities=25% Similarity=0.255 Sum_probs=46.4
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
||+|++|+||||. ..+..+.++..++|++|++. |++++|+|++. ...++.+.+.+++
T Consensus 1 ik~v~~DlDGTLl-~~~~~i~~~~~~~i~~l~~~-g~~~~~~TGR~--------~~~~~~~~~~l~~ 57 (215)
T TIGR01487 1 IKLVAIDIDGTLT-EPNRMISERAIEAIRKAEKK-GIPVSLVTGNT--------VPFARALAVLIGT 57 (215)
T ss_pred CcEEEEecCCCcC-CCCcccCHHHHHHHHHHHHC-CCEEEEEcCCc--------chhHHHHHHHhCC
Confidence 6899999999999 45557999999999999997 99999999997 4445555555543
No 107
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.18 E-value=3.6e-06 Score=74.54 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=46.8
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
+|+|++|+||||. ..+..+.|...++|+++++. |++++|+|+++ ...+..+.+.+|+
T Consensus 3 ~kli~~DlDGTLl-~~~~~i~~~~~~al~~l~~~-G~~~~iaTGR~--------~~~~~~~~~~l~~ 59 (230)
T PRK01158 3 IKAIAIDIDGTIT-DKDRRLSLKAVEAIRKAEKL-GIPVILATGNV--------LCFARAAAKLIGT 59 (230)
T ss_pred eeEEEEecCCCcC-CCCCccCHHHHHHHHHHHHC-CCEEEEEcCCc--------hHHHHHHHHHhCC
Confidence 7999999999999 44456889999999999987 99999999997 4555555566654
No 108
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.17 E-value=5.2e-06 Score=75.16 Aligned_cols=59 Identities=10% Similarity=0.209 Sum_probs=50.7
Q ss_pred CCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.+|.|++|+||||. ..+..+.|...++|+++++. |++++|+|+++ ...+..+.+.+++.
T Consensus 2 ~~kli~~DlDGTLl-~~~~~i~~~~~~ai~~~~~~-G~~~~iaTGR~--------~~~~~~~~~~l~~~ 60 (272)
T PRK10530 2 TYRVIALDLDGTLL-TPKKTILPESLEALARAREA-GYKVIIVTGRH--------HVAIHPFYQALALD 60 (272)
T ss_pred CccEEEEeCCCceE-CCCCccCHHHHHHHHHHHHC-CCEEEEEcCCC--------hHHHHHHHHhcCCC
Confidence 48999999999999 44557899999999999997 99999999998 66777788888753
No 109
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=98.16 E-value=4.5e-06 Score=72.47 Aligned_cols=83 Identities=14% Similarity=0.029 Sum_probs=64.0
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE-------cc---CC---------CCHH
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR-------HR---VK---------KPAG 261 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~-------ha---~K---------KP~p 261 (299)
.+.|++.+.++.+++. |++++|+|++. ...++.+++.+|+..+. .. .. ++..
T Consensus 87 ~~~~~~~~~l~~l~~~-g~~v~ivS~s~--------~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~ 157 (202)
T TIGR01490 87 ILYPEARDLIRWHKAE-GHTIVLVSASL--------TILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKV 157 (202)
T ss_pred hccHHHHHHHHHHHHC-CCEEEEEeCCc--------HHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHH
Confidence 5789999999999987 99999999998 67888899999875331 10 00 1111
Q ss_pred -HHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 262 -TAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 262 -~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
.+++++++.+++++++++|||+..|+..+..
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~ 189 (202)
T TIGR01490 158 HALAELLAEEQIDLKDSYAYGDSISDLPLLSL 189 (202)
T ss_pred HHHHHHHHHcCCCHHHcEeeeCCcccHHHHHh
Confidence 2677788889999999999999999665543
No 110
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.12 E-value=5.3e-06 Score=76.52 Aligned_cols=60 Identities=18% Similarity=0.193 Sum_probs=50.9
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
..+|.|++|+||||.. .+..+.++..++|++|++. |++++|+|+++ ...+..+.+.+|+.
T Consensus 2 ~~~kli~~DlDGTLl~-~~~~~~~~~~~ai~~l~~~-Gi~~~iaTgR~--------~~~~~~~~~~l~l~ 61 (273)
T PRK00192 2 MMKLLVFTDLDGTLLD-HHTYSYEPAKPALKALKEK-GIPVIPCTSKT--------AAEVEVLRKELGLE 61 (273)
T ss_pred CcceEEEEcCcccCcC-CCCcCcHHHHHHHHHHHHC-CCEEEEEcCCC--------HHHHHHHHHHcCCC
Confidence 3589999999999994 3456778899999999997 99999999998 67788888888753
No 111
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.11 E-value=9.1e-06 Score=79.28 Aligned_cols=82 Identities=13% Similarity=0.156 Sum_probs=63.6
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHc-C-------C----cEEEccCCCC---------
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI-G-------I----KVIRHRVKKP--------- 259 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~L-G-------I----~vI~ha~KKP--------- 259 (299)
...|++.++|++|++. |++++|+||+. ...++.+++.+ | + +++..+.+||
T Consensus 184 ~~~pgl~elL~~Lr~~-G~klfLvTNS~--------~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf 254 (343)
T TIGR02244 184 LRDPKLPLFLSKLKEH-GKKLFLLTNSD--------YDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPF 254 (343)
T ss_pred ccchhHHHHHHHHHHC-CCeEEEEeCCC--------HHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCce
Confidence 4579999999999997 99999999998 77788877775 5 3 1222122222
Q ss_pred --------------------H-----HHHHHHHHHhCCCCCcEEEEcCCccc-ccccc
Q 022336 260 --------------------A-----GTAEEIEKHFGCQSSQLIMVDMCRIV-IFPGP 291 (299)
Q Consensus 260 --------------------~-----p~le~alk~lGi~PeEiamVGDrl~D-I~gAn 291 (299)
. +.+....+.+|+++++++||||++++ |.+|+
T Consensus 255 ~~v~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~k 312 (343)
T TIGR02244 255 RQVDVETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSK 312 (343)
T ss_pred EEEeCCCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhH
Confidence 1 11677888999999999999999998 99998
No 112
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.10 E-value=6.2e-06 Score=75.05 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=50.6
Q ss_pred CCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
.||.|++|+||||. ..+..+.+...++|+++++. |++++|+|+++ ...+..+.+.+|+
T Consensus 2 ~~kli~~DlDGTLl-~~~~~i~~~~~~ai~~l~~~-G~~~~iaTGR~--------~~~~~~~~~~l~~ 59 (270)
T PRK10513 2 AIKLIAIDMDGTLL-LPDHTISPAVKQAIAAARAK-GVNVVLTTGRP--------YAGVHRYLKELHM 59 (270)
T ss_pred ceEEEEEecCCcCc-CCCCccCHHHHHHHHHHHHC-CCEEEEecCCC--------hHHHHHHHHHhCC
Confidence 58999999999999 44557899999999999997 99999999998 6677778888875
No 113
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.10 E-value=6.2e-06 Score=79.22 Aligned_cols=108 Identities=14% Similarity=0.073 Sum_probs=77.7
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhcCC--CCcCCccccCCcCCCCH---HHHHHcCCcEEEEeccCeeecCCCccc---C
Q 022336 132 SQLKAALGQRINVEGIVSSTVVFAKDR--HLALPHVTVPDIRYIDW---AELQRRGFKGVVFDKDNTLTAPYSLTL---W 203 (299)
Q Consensus 132 ~~~~~~~~q~~N~~gi~~~~~~~~~~p--~ll~P~~~v~sI~~Id~---~~Lk~~GIRaLVlD~DNTLT~p~~~~l---~ 203 (299)
+++|..+-+.+..+....++-. --+| --|+=.|+|.++.++.- +.+--.-.+.|+||+||||... +..+ .
T Consensus 73 ~~~R~~~k~~fk~~~lGh~~vl-~~~~~~y~~l~eW~v~~~~~v~~~~~~~~~~~~~~~i~~D~D~TL~~~-~~~v~ird 150 (303)
T PHA03398 73 RDIRKNLKTAFKTSYLGHVFVL-NEKPPMYAFLKEWYVQNYLEVYQLKSESLVWEIPHVIVFDLDSTLITD-EEPVRIRD 150 (303)
T ss_pred HHHHHHHHHHhcccccceEEEe-cCCCcHHHHHHhhccceeechhhhccceeEeeeccEEEEecCCCccCC-CCccccCC
Confidence 5677777777777766665542 2222 22455677777766553 2222244589999999999944 3344 6
Q ss_pred chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 204 GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 204 Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
|++.+.|++|+++ |++++|+||+. .+.+..+++.+|+.
T Consensus 151 p~V~EtL~eLkek-GikLaIvTNg~--------Re~v~~~Le~lgL~ 188 (303)
T PHA03398 151 PFVYDSLDELKER-GCVLVLWSYGN--------REHVVHSLKETKLE 188 (303)
T ss_pred hhHHHHHHHHHHC-CCEEEEEcCCC--------hHHHHHHHHHcCCC
Confidence 9999999999997 99999999987 67788888988875
No 114
>PRK10976 putative hydrolase; Provisional
Probab=98.09 E-value=7.2e-06 Score=74.58 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=50.3
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
||.|++|+||||. ..+..+.+...++|+++++. |++++|+|+++ ...+..+.+.+|+.
T Consensus 2 ikli~~DlDGTLl-~~~~~is~~~~~ai~~l~~~-G~~~~iaTGR~--------~~~~~~~~~~l~~~ 59 (266)
T PRK10976 2 YQVVASDLDGTLL-SPDHTLSPYAKETLKLLTAR-GIHFVFATGRH--------HVDVGQIRDNLEIK 59 (266)
T ss_pred ceEEEEeCCCCCc-CCCCcCCHHHHHHHHHHHHC-CCEEEEEcCCC--------hHHHHHHHHhcCCC
Confidence 7899999999999 44457999999999999997 99999999998 66777788888764
No 115
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.07 E-value=1.4e-05 Score=72.78 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=44.8
Q ss_pred EEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 186 LVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
++||+||||. ....+.|++.++++.+++. |+++.++||+.|.. ..+.++.+.+.+|++
T Consensus 1 ~lfD~DGvL~--~~~~~~~~a~e~i~~l~~~-g~~~~~~tN~~~~~----~~~~~~~l~~~~g~~ 58 (236)
T TIGR01460 1 FLFDIDGVLW--LGHKPIPGAAEALNRLRAK-GKPVVFLTNNSSRS----EEDYAEKLSSLLGVD 58 (236)
T ss_pred CEEeCcCccC--cCCccCcCHHHHHHHHHHC-CCeEEEEECCCCCC----HHHHHHHHHHhcCCC
Confidence 5899999999 3446688999999999997 99999999998643 234455555557763
No 116
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.07 E-value=8.5e-06 Score=74.62 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=50.7
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
+|.|++|+||||.. .+..+.+...++|+++++. |++++|+|+++ ...+..+.+.+|+.
T Consensus 2 ~kli~~DlDGTLl~-~~~~i~~~~~~ai~~l~~~-G~~~~iaTGR~--------~~~~~~~~~~l~~~ 59 (272)
T PRK15126 2 ARLAAFDMDGTLLM-PDHHLGEKTLSTLARLRER-DITLTFATGRH--------VLEMQHILGALSLD 59 (272)
T ss_pred ccEEEEeCCCcCcC-CCCcCCHHHHHHHHHHHHC-CCEEEEECCCC--------HHHHHHHHHHcCCC
Confidence 79999999999994 4457999999999999997 99999999998 67788888888764
No 117
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.03 E-value=1.4e-05 Score=72.98 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=36.2
Q ss_pred cEEEEeccCeeec----CCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 184 KGVVFDKDNTLTA----PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 184 RaLVlD~DNTLT~----p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
++|+||.||||++ |....+.+++.+.|++|.+..+..|+|+|+.+
T Consensus 4 ~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~ 52 (244)
T TIGR00685 4 RAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRK 52 (244)
T ss_pred EEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 7899999999995 34445789999999999876456788999774
No 118
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.03 E-value=1.2e-05 Score=68.22 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=47.2
Q ss_pred CcEEEEeccCeeecCCC-----cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCC-------ccHHHHHHHHHHcCCc
Q 022336 183 FKGVVFDKDNTLTAPYS-----LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYD-------NDASKARKLEGKIGIK 250 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~-----~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d-------~~~e~a~~~lk~LGI~ 250 (299)
+|+|++|+||||...+. ..+.+++.+.++++++. |+.++++|..+...... .....+...+++.+++
T Consensus 1 ~K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~-G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip 79 (126)
T TIGR01689 1 MKRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKAL-GFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP 79 (126)
T ss_pred CCEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHC-CCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC
Confidence 37999999999985432 23667889999999886 99999999987211000 0012556666777877
Q ss_pred E
Q 022336 251 V 251 (299)
Q Consensus 251 v 251 (299)
|
T Consensus 80 Y 80 (126)
T TIGR01689 80 Y 80 (126)
T ss_pred C
Confidence 5
No 119
>PLN02645 phosphoglycolate phosphatase
Probab=98.02 E-value=2.1e-05 Score=74.58 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCCCCCCCC-----c-cHHHHHHHHHHcCCcEEEccCCCCHHH-HHHHHHHhCCCCCcE
Q 022336 205 PLSSSIEQCKSVFGHDIAVFSNSAGLYEYD-----N-DASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQL 277 (299)
Q Consensus 205 gv~e~L~~Lke~fGikVaIVSNnaGs~~~d-----~-~~e~a~~~lk~LGI~vI~ha~KKP~p~-le~alk~lGi~PeEi 277 (299)
.+..+...++.. +-.++|+||..-....+ . ....+..+....|..... ..||.+. ++.+++++|++++++
T Consensus 174 ~l~~a~~~l~~~-~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~--~gKP~p~~~~~a~~~~~~~~~~~ 250 (311)
T PLN02645 174 KIQYATLCIREN-PGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLV--VGKPSTFMMDYLANKFGIEKSQI 250 (311)
T ss_pred HHHHHHHHHhcC-CCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCccc--CCCChHHHHHHHHHHcCCCcccE
Confidence 334444444432 34699999987321000 1 112344444445544332 2599885 889999999999999
Q ss_pred EEEcCCc-cccccccee
Q 022336 278 IMVDMCR-IVIFPGPVV 293 (299)
Q Consensus 278 amVGDrl-~DI~gAn~~ 293 (299)
+||||++ .||.+|+.+
T Consensus 251 ~~VGD~~~~Di~~A~~a 267 (311)
T PLN02645 251 CMVGDRLDTDILFGQNG 267 (311)
T ss_pred EEEcCCcHHHHHHHHHc
Confidence 9999998 889988754
No 120
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.02 E-value=1.1e-05 Score=73.34 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
-+|.|++|+||||+ ..+..+.+...++|+++++. |++++|+|+++ ...+..+.+.+++.
T Consensus 2 ~~kli~~DlDGTLl-~~~~~i~~~~~~al~~~~~~-g~~v~iaTGR~--------~~~~~~~~~~l~~~ 60 (264)
T COG0561 2 MIKLLAFDLDGTLL-DSNKTISPETKEALARLREK-GVKVVLATGRP--------LPDVLSILEELGLD 60 (264)
T ss_pred CeeEEEEcCCCCcc-CCCCccCHHHHHHHHHHHHC-CCEEEEECCCC--------hHHHHHHHHHcCCC
Confidence 47999999999999 44455999999999999997 99999999998 67888888888874
No 121
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=98.01 E-value=2.8e-05 Score=71.16 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=60.8
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE--EE------------c----------
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV--IR------------H---------- 254 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v--I~------------h---------- 254 (299)
..++.|++.+....|++. |.+|+++|+.- ...+..+...|||++ ++ +
T Consensus 86 k~~lT~Gi~eLv~~L~~~-~~~v~liSGGF--------~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsd 156 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHAR-GTQVYLISGGF--------RQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSD 156 (227)
T ss_pred CCccCCCHHHHHHHHHHc-CCeEEEEcCCh--------HHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCcccc
Confidence 345678999999999998 99999999985 778999999999975 21 1
Q ss_pred cCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 255 RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 255 a~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
+..|+. .+..+.+ +...+.++||||.-+|+.+-+
T Consensus 157 sggKa~-~i~~lrk--~~~~~~~~mvGDGatDlea~~ 190 (227)
T KOG1615|consen 157 SGGKAE-VIALLRK--NYNYKTIVMVGDGATDLEAMP 190 (227)
T ss_pred CCccHH-HHHHHHh--CCChheeEEecCCccccccCC
Confidence 122331 1333333 899999999999999966543
No 122
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=98.01 E-value=1.8e-05 Score=73.08 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=62.1
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc----cCCCCHHH-HHHHHHHhCCCC-C
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH----RVKKPAGT-AEEIEKHFGCQS-S 275 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h----a~KKP~p~-le~alk~lGi~P-e 275 (299)
+-||+.+.++.|+.. |++++++|+.. ...++....+.+.+...++..++.. ...||+|. |..+++++|..| +
T Consensus 93 ~~PGa~kLv~~L~~~-gip~alat~s~-~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~~~l~~~~~~ 170 (222)
T KOG2914|consen 93 LMPGAEKLVNHLKNN-GIPVALATSST-SASFELKISRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAAKRLGVPPPS 170 (222)
T ss_pred cCCcHHHHHHHHHhC-CCCeeEEecCC-cccHHHHHHHhhHHHHhcCCCeecCCccccCCCCCchHHHHHHHhcCCCCcc
Confidence 346777777778886 99999999995 1111211223333444555444411 23588884 899999999999 9
Q ss_pred cEEEEcCCccccccccee
Q 022336 276 QLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 276 EiamVGDrl~DI~gAn~~ 293 (299)
.|++++|....|.+|+-+
T Consensus 171 k~lVfeds~~Gv~aa~aa 188 (222)
T KOG2914|consen 171 KCLVFEDSPVGVQAAKAA 188 (222)
T ss_pred ceEEECCCHHHHHHHHhc
Confidence 999999999998777543
No 123
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=98.01 E-value=2.2e-05 Score=74.63 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=65.6
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc----EE------Ec--c--CCCCHH---
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK----VI------RH--R--VKKPAG--- 261 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~----vI------~h--a--~KKP~p--- 261 (299)
...+.||+.++++.|++. |++++|+|++. ...++.+++.+|+. .+ +. + ..+|.|
T Consensus 119 ~l~l~pG~~efl~~L~~~-GIpv~IvS~G~--------~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~ 189 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQH-SIPVFIFSAGI--------GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIH 189 (277)
T ss_pred CCccCcCHHHHHHHHHHC-CCcEEEEeCCc--------HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCccc
Confidence 355679999999999997 99999999987 67888899988872 22 11 1 124444
Q ss_pred ------H-HHHHHHHhC--CCCCcEEEEcCCccccccccee
Q 022336 262 ------T-AEEIEKHFG--CQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 262 ------~-le~alk~lG--i~PeEiamVGDrl~DI~gAn~~ 293 (299)
. ++.+.+.++ .++++|++|||+..|+.+|.=+
T Consensus 190 ~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 190 TFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred ccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 3 335777888 8999999999999998777543
No 124
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.98 E-value=1.7e-05 Score=69.19 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=45.2
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
.|++|+||||+.+....+.++..++|++|++. |++++|+|++. ...+..+.+.++
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~l~~l~~~-g~~~~i~TGR~--------~~~~~~~~~~~~ 55 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEALERLREA-GVKVVLVTGRS--------LAEIKELLKQLP 55 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHHHHHHHHC-CCEEEEECCCC--------HHHHHHHHHhCC
Confidence 37999999999654367899999999999997 89999999997 566666666544
No 125
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.97 E-value=1.6e-05 Score=73.19 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=51.2
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
+-+++|++|+||||..+ +..+.+...++|++|++. |++++|+|+++ ...+..+.+.+|+
T Consensus 5 ~~~~lI~~DlDGTLL~~-~~~i~~~~~~ai~~l~~~-Gi~~viaTGR~--------~~~i~~~~~~l~~ 63 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDS-HTYDWQPAAPWLTRLREA-QVPVILCSSKT--------AAEMLPLQQTLGL 63 (271)
T ss_pred CCCeEEEEeCccCCcCC-CCcCcHHHHHHHHHHHHc-CCeEEEEcCCC--------HHHHHHHHHHhCC
Confidence 56899999999999944 446778899999999997 99999999998 6778888888886
No 126
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.94 E-value=3.7e-05 Score=81.34 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=77.1
Q ss_pred HHHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 176 AELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
+.+...|.+.|.+=.|+++.. .-...+.|++.+.+++|++. |++++|+|+.. ...++.+++++|+.+..
T Consensus 541 ~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~-gi~~~llTGd~--------~~~a~~ia~~lgi~~~~ 611 (741)
T PRK11033 541 NELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKAL-GIKGVMLTGDN--------PRAAAAIAGELGIDFRA 611 (741)
T ss_pred HHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHC-CCEEEEEcCCC--------HHHHHHHHHHcCCCeec
Confidence 345678999999999998762 22456789999999999997 99999999987 78999999999997543
Q ss_pred ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccccc
Q 022336 254 HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIF 288 (299)
Q Consensus 254 ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~ 288 (299)
. -.|.... ++++.++ .+++++||||+++|+-
T Consensus 612 ~--~~p~~K~-~~v~~l~-~~~~v~mvGDgiNDap 642 (741)
T PRK11033 612 G--LLPEDKV-KAVTELN-QHAPLAMVGDGINDAP 642 (741)
T ss_pred C--CCHHHHH-HHHHHHh-cCCCEEEEECCHHhHH
Confidence 2 2443222 3455555 3578999999999943
No 127
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.93 E-value=1.8e-05 Score=70.15 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=46.2
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.|++|+||||+.+. ....+...++|+++++. |++++|+||++ ...++.+.+.+|+.
T Consensus 1 ~i~~DlDGTLL~~~-~~~~~~~~~~l~~l~~~-gi~~~i~TgR~--------~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 1 WVFSDLDGTLLDSH-SYDWQPAAPWLTRLQEA-GIPVILCTSKT--------AAEVEYLQKALGLT 56 (221)
T ss_pred CEEEeCCCCCcCCC-CCCcHHHHHHHHHHHHC-CCeEEEEcCCC--------HHHHHHHHHHcCCC
Confidence 38999999999444 33455588999999997 99999999998 77888888888864
No 128
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.93 E-value=6.7e-05 Score=65.02 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=37.5
Q ss_pred EEEEeccCeeecCCC----------cccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 185 GVVFDKDNTLTAPYS----------LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 185 aLVlD~DNTLT~p~~----------~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
+|++|+||||+..+. ....|++.++++++++. |++++++|+++
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~-G~~ivy~TGRp 53 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNN-GYKILYLTARP 53 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHc-CCeEEEEcCCc
Confidence 489999999995441 46789999999999997 99999999998
No 129
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.93 E-value=1.8e-05 Score=68.83 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=48.1
Q ss_pred EEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 186 LVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
|++|+||||. ..+..+.++..++|++++++ |++++|+|+++ ...+..+.+.+++.
T Consensus 1 i~~DlDGTLl-~~~~~i~~~~~~al~~l~~~-g~~~~i~TGR~--------~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 1 IFSDLDGTLL-NSDGKISPETIEALKELQEK-GIKLVIATGRS--------YSSIKRLLKELGID 55 (254)
T ss_dssp EEEECCTTTC-STTSSSCHHHHHHHHHHHHT-TCEEEEECSST--------HHHHHHHHHHTTHC
T ss_pred cEEEECCcee-cCCCeeCHHHHHHHHhhccc-ceEEEEEccCc--------ccccccccccccch
Confidence 7899999998 44556999999999999997 99999999998 77888888888753
No 130
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.91 E-value=2.4e-05 Score=71.81 Aligned_cols=100 Identities=19% Similarity=0.131 Sum_probs=65.0
Q ss_pred cCCcEEEEeccCeeec-------------------------CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCc
Q 022336 181 RGFKGVVFDKDNTLTA-------------------------PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDN 235 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~-------------------------p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~ 235 (299)
.+..+||||+|+|+.. .+....-|++.++++.+++. |++|+++||... .
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~-G~~V~~iT~R~~-----~ 143 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSR-GVKVFFITGRPE-----S 143 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHT-TEEEEEEEEEET-----T
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHC-CCeEEEEecCCc-----h
Confidence 6889999999999751 11123457889999999997 999999999972 2
Q ss_pred cHHHHHHHHHHcCCcE-----EEccC--CC-CH----HH-HHHHHHHhCCCCCcEEEEcCCcccccc
Q 022336 236 DASKARKLEGKIGIKV-----IRHRV--KK-PA----GT-AEEIEKHFGCQSSQLIMVDMCRIVIFP 289 (299)
Q Consensus 236 ~~e~a~~~lk~LGI~v-----I~ha~--KK-P~----p~-le~alk~lGi~PeEiamVGDrl~DI~g 289 (299)
..+....-++..|++. ++... .+ .. .. ...+.+. |... +++|||++.|+.+
T Consensus 144 ~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~-Gy~I--i~~iGD~~~D~~~ 207 (229)
T PF03767_consen 144 QREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKK-GYRI--IANIGDQLSDFSG 207 (229)
T ss_dssp CHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHT-TEEE--EEEEESSGGGCHC
T ss_pred hHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHc-CCcE--EEEeCCCHHHhhc
Confidence 3455555666677642 22111 11 11 11 2333333 3222 8999999999988
No 131
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.87 E-value=3.8e-05 Score=73.29 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=48.0
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHh---CCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSV---FGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~---fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
+++||+||||. ....+.|++.++++.|++. +|+++.++||+.|.. ..+.++.+.+.+|++
T Consensus 2 ~~ifD~DGvL~--~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s----~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 2 GFAFDIDGVLF--RGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFS----ERARAEEISSLLGVD 64 (321)
T ss_pred EEEEeCcCceE--CCccccHHHHHHHHHHhccccccCCCEEEEecCCCCC----HHHHHHHHHHHcCCC
Confidence 68999999999 4456699999999998873 489999999998643 234567777888875
No 132
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=97.87 E-value=4.4e-06 Score=63.19 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=33.6
Q ss_pred CCCCHHH-HHHHHHHhCCCCCcEEEEcCC-ccccccccee
Q 022336 256 VKKPAGT-AEEIEKHFGCQSSQLIMVDMC-RIVIFPGPVV 293 (299)
Q Consensus 256 ~KKP~p~-le~alk~lGi~PeEiamVGDr-l~DI~gAn~~ 293 (299)
+.||.+. ++.+++++++++++++||||+ ..||.+|+.+
T Consensus 2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~ 41 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAA 41 (75)
T ss_dssp CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHc
Confidence 5799985 899999999999999999999 7779998753
No 133
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.87 E-value=2.8e-05 Score=70.49 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=48.0
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.|++|+||||. ..+..+.++..++|+++++. |++++|+|+++ ...+..+.+.+|+.
T Consensus 1 li~~DlDGTLl-~~~~~i~~~~~~~i~~l~~~-G~~~~iaTGR~--------~~~~~~~~~~~~~~ 56 (256)
T TIGR00099 1 LIFIDLDGTLL-NDDHTISPSTKEALAKLREK-GIKVVLATGRP--------YKEVKNILKELGLD 56 (256)
T ss_pred CEEEeCCCCCC-CCCCccCHHHHHHHHHHHHC-CCeEEEEeCCC--------HHHHHHHHHHcCCC
Confidence 47999999999 44557899999999999997 99999999998 67777788888764
No 134
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.82 E-value=4.3e-05 Score=73.55 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=51.1
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.|.|++|+||||. +.....++...++|++|++. |+.|+++|.+. ...+..+.+.+|+.
T Consensus 1 ~KLIftDLDGTLL-d~~~~~~~~a~~aL~~Lk~~-GI~vVlaTGRt--------~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLL-DLEFNSYGAARQALAALERR-SIPLVLYSLRT--------RAQLEHLCRQLRLE 58 (302)
T ss_pred CcEEEEeCCCCCc-CCCCcCCHHHHHHHHHHHHC-CCEEEEEcCCC--------HHHHHHHHHHhCCC
Confidence 4889999999999 55667888899999999997 99999999998 77888888898874
No 135
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.81 E-value=9.7e-05 Score=78.27 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=80.6
Q ss_pred CCCHHHHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 172 YIDWAELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 172 ~Id~~~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
+-+.+.+.+.|-..+++-+||.+.. --...+.|+..+.+++|++. |++++++|+-. ...++.+++++||
T Consensus 506 ~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~-Gi~~~mLTGDn--------~~~A~~iA~~lGI 576 (713)
T COG2217 506 SERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKAL-GIKVVMLTGDN--------RRTAEAIAKELGI 576 (713)
T ss_pred hhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHC-CCeEEEEcCCC--------HHHHHHHHHHcCh
Confidence 3445667778888999999997652 13556889999999999997 99999999986 7899999999999
Q ss_pred cEEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 250 KVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 250 ~vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
+.++-. -.|....+ +++++.-.-..++||||.++|
T Consensus 577 d~v~Ae-llPedK~~-~V~~l~~~g~~VamVGDGIND 611 (713)
T COG2217 577 DEVRAE-LLPEDKAE-IVRELQAEGRKVAMVGDGIND 611 (713)
T ss_pred Hhhecc-CCcHHHHH-HHHHHHhcCCEEEEEeCCchh
Confidence 766544 36765433 334444444789999999999
No 136
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.80 E-value=3.6e-05 Score=67.75 Aligned_cols=53 Identities=26% Similarity=0.318 Sum_probs=42.2
Q ss_pred EEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 186 VVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 186 LVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
|++|+||||. ..+..+.+...++|+++++. |+.++|+|+++ ...+..+.+.+|
T Consensus 1 i~~DlDGTLl-~~~~~i~~~~~~al~~l~~~-Gi~~~~aTGR~--------~~~~~~~~~~l~ 53 (225)
T TIGR01482 1 IASDIDGTLT-DPNRAINESALEAIRKAESV-GIPVVLVTGNS--------VQFARALAKLIG 53 (225)
T ss_pred CeEeccCccC-CCCcccCHHHHHHHHHHHHC-CCEEEEEcCCc--------hHHHHHHHHHhC
Confidence 6899999999 44456889999999999997 99999999987 444555555554
No 137
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.79 E-value=5.4e-06 Score=75.30 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCCCCCCC-C---cc-HHHHHHHHHHcCCcEEEccCCCCHHH-HHHHHHHhCCC-CC
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSAGLYEY-D---ND-ASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQ-SS 275 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~-d---~~-~e~a~~~lk~LGI~vI~ha~KKP~p~-le~alk~lGi~-Pe 275 (299)
++++.+.++.+++. |+++ |+||....... . .+ ...+..++. .|..... ..||.+. ++.+++++|.. ++
T Consensus 140 ~~~~~~~l~~l~~~-g~~~-i~tN~d~~~~~~~~~~~~~g~~~~~i~~-~g~~~~~--~gKP~~~~~~~~~~~~~~~~~~ 214 (242)
T TIGR01459 140 LDEFDELFAPIVAR-KIPN-ICANPDRGINQHGIYRYGAGYYAELIKQ-LGGKVIY--SGKPYPAIFHKALKECSNIPKN 214 (242)
T ss_pred HHHHHHHHHHHHhC-CCcE-EEECCCEeccCCCceEecccHHHHHHHH-hCCcEec--CCCCCHHHHHHHHHHcCCCCcc
Confidence 57888899988776 8997 88998632110 0 00 112222222 3443332 4688875 88999999975 67
Q ss_pred cEEEEcCCc-ccccccce
Q 022336 276 QLIMVDMCR-IVIFPGPV 292 (299)
Q Consensus 276 EiamVGDrl-~DI~gAn~ 292 (299)
+++||||++ .||.+|+.
T Consensus 215 ~~~~vGD~~~~Di~~a~~ 232 (242)
T TIGR01459 215 RMLMVGDSFYTDILGANR 232 (242)
T ss_pred cEEEECCCcHHHHHHHHH
Confidence 999999995 88998875
No 138
>PTZ00174 phosphomannomutase; Provisional
Probab=97.77 E-value=5e-05 Score=69.44 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=41.8
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
+.+|+|++|+||||. ..+..+.|...++|+++++. |+.++|+|+++
T Consensus 3 ~~~klia~DlDGTLL-~~~~~is~~~~~ai~~l~~~-Gi~~viaTGR~ 48 (247)
T PTZ00174 3 MKKTILLFDVDGTLT-KPRNPITQEMKDTLAKLKSK-GFKIGVVGGSD 48 (247)
T ss_pred CCCeEEEEECcCCCc-CCCCCCCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 568999999999999 55567899999999999997 99999999987
No 139
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.76 E-value=0.00013 Score=66.47 Aligned_cols=83 Identities=13% Similarity=0.056 Sum_probs=52.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCCC-----Cc-cHHHHHHHHHHcCCcEEEccCCCCHHH-HHHHHHHhCCCCCcE-EE
Q 022336 208 SSIEQCKSVFGHDIAVFSNSAGLYEY-----DN-DASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQL-IM 279 (299)
Q Consensus 208 e~L~~Lke~fGikVaIVSNnaGs~~~-----d~-~~e~a~~~lk~LGI~vI~ha~KKP~p~-le~alk~lGi~PeEi-am 279 (299)
.....+.+. |-..+|+||..-.... .. ....+..+....|..... ..||.+. ++.++++++++++++ +|
T Consensus 135 ~~a~~~l~~-~~~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~--~~KP~~~~~~~~~~~~~~~~~~~~~~ 211 (236)
T TIGR01460 135 AKAAYLLAE-GDVPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTV--VGKPSPAIYRAALNLLQARPERRDVM 211 (236)
T ss_pred HHHHHHHhC-CCCeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeee--ecCCCHHHHHHHHHHhCCCCccceEE
Confidence 333344443 5457888996522111 11 123445555555544332 2488874 889999999999997 99
Q ss_pred EcCCc-cccccccee
Q 022336 280 VDMCR-IVIFPGPVV 293 (299)
Q Consensus 280 VGDrl-~DI~gAn~~ 293 (299)
|||++ .||.+|+.+
T Consensus 212 IGD~~~~Di~~A~~~ 226 (236)
T TIGR01460 212 VGDNLRTDILGAKNA 226 (236)
T ss_pred ECCCcHHHHHHHHHC
Confidence 99999 789998753
No 140
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.75 E-value=0.00015 Score=63.03 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=68.3
Q ss_pred cEEEEeccCeeecCC-----------------------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHH
Q 022336 184 KGVVFDKDNTLTAPY-----------------------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKA 240 (299)
Q Consensus 184 RaLVlD~DNTLT~p~-----------------------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a 240 (299)
++|+||.|+||...+ .+.+.|.+.+.+..++.. |+-+..+|-+- ...|
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warns-G~i~~~~sWN~--------~~kA 71 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNS-GYILGLASWNF--------EDKA 71 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhC-CcEEEEeecCc--------hHHH
Confidence 579999999998422 223567888999888887 99999999997 6778
Q ss_pred HHHHHHcCCcEEEc-cCCCCHH--H--HHHHHHHh------CCCCCcEEEEcCCcc
Q 022336 241 RKLEGKIGIKVIRH-RVKKPAG--T--AEEIEKHF------GCQSSQLIMVDMCRI 285 (299)
Q Consensus 241 ~~~lk~LGI~vI~h-a~KKP~p--~--le~alk~l------Gi~PeEiamVGDrl~ 285 (299)
-+.++.|++..++| -+-+|+| . +-+++... .++|++++|+.||-.
T Consensus 72 ~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~i 127 (164)
T COG4996 72 IKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRI 127 (164)
T ss_pred HHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccc
Confidence 88888898865554 2345655 2 33444433 479999999999853
No 141
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.71 E-value=0.00041 Score=73.21 Aligned_cols=126 Identities=15% Similarity=0.081 Sum_probs=80.1
Q ss_pred ccccccccchhhhhhhhHHHHHHHhccCCCHHHHHH-HHHHH-----hcCCCCcCCccccCCcCCCCHHHHH--------
Q 022336 114 PRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVS-STVVF-----AKDRHLALPHVTVPDIRYIDWAELQ-------- 179 (299)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~N~~gi~~-~~~~~-----~~~p~ll~P~~~v~sI~~Id~~~Lk-------- 179 (299)
|-+-+.|...-+...||-..|-.-.-..+=-..+.. ...-| +....-.-+-...+++.+||.+...
T Consensus 311 ph~h~~kg~~hi~~~m~~~~l~~iyhs~l~~~~~~~~i~~~l~~~~~~~~~~~~p~~~~~p~~~~~d~~~f~~~~~~~~~ 390 (694)
T PRK14502 311 PHLHEDKGGDHLLQDMLLPSLAVIYHSPLADEAGRKMIETQLAGIEGLESGPEIPQIKLIPPPQKMDLPKFSAIIEKYLP 390 (694)
T ss_pred CccccccchhHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHhhccccccccCCCCCeecCCcccCCHHHHHHHHHHhch
Confidence 778888888888899998663222112221122221 11111 1111111112333667777765432
Q ss_pred ----------------------HcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccH
Q 022336 180 ----------------------RRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDA 237 (299)
Q Consensus 180 ----------------------~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~ 237 (299)
.+-.|.|++|+||||. ..+....+...++|+++++. |++++|+|++. .
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~KLIfsDLDGTLL-d~d~~i~~~t~eAL~~L~ek-GI~~VIATGRs--------~ 460 (694)
T PRK14502 391 QMVLPDGELISRAARPSRLPSSGQFKKIVYTDLDGTLL-NPLTYSYSTALDALRLLKDK-ELPLVFCSAKT--------M 460 (694)
T ss_pred heeCCCCCccchhhhcccCCCcCceeeEEEEECcCCCc-CCCCccCHHHHHHHHHHHHc-CCeEEEEeCCC--------H
Confidence 1346899999999999 44446667889999999997 99999999998 6
Q ss_pred HHHHHHHHHcCC
Q 022336 238 SKARKLEGKIGI 249 (299)
Q Consensus 238 e~a~~~lk~LGI 249 (299)
..+..+.+.+|+
T Consensus 461 ~~i~~l~~~Lgl 472 (694)
T PRK14502 461 GEQDLYRNELGI 472 (694)
T ss_pred HHHHHHHHHcCC
Confidence 778888888876
No 142
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.70 E-value=0.00023 Score=75.03 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=79.7
Q ss_pred HHHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 176 AELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
+.+.+.|.+.+++-.|+++.. .-...+.|++.+.+++|++. |++++++|+.. ...+..+++++|+..++
T Consensus 419 ~~~a~~G~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~-Gi~v~miTGD~--------~~ta~~iA~~lGI~~v~ 489 (675)
T TIGR01497 419 DQVARQGGTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKM-GIKTIMITGDN--------RLTAAAIAAEAGVDDFI 489 (675)
T ss_pred HHHHhCCCeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHC-CCEEEEEcCCC--------HHHHHHHHHHcCCCEEE
Confidence 345678999999988888762 12445778999999999997 99999999986 78999999999997665
Q ss_pred ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---cccccee
Q 022336 254 HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPGPVV 293 (299)
Q Consensus 254 ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gAn~~ 293 (299)
.. -.|.... ++++.+.-.-..++|+||..+| +..|.+=
T Consensus 490 a~-~~PedK~-~~v~~lq~~g~~VamvGDG~NDapAL~~AdvG 530 (675)
T TIGR01497 490 AE-ATPEDKI-ALIRQEQAEGKLVAMTGDGTNDAPALAQADVG 530 (675)
T ss_pred cC-CCHHHHH-HHHHHHHHcCCeEEEECCCcchHHHHHhCCEe
Confidence 54 3665432 2333343345579999999999 5555443
No 143
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.67 E-value=0.00031 Score=74.14 Aligned_cols=108 Identities=11% Similarity=0.144 Sum_probs=80.7
Q ss_pred HHHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 176 AELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
+.+.+.|.+.+++-.|+++.. .-...+.|++.+.+++|++. |+++.++|+-. ...++.+++++||+.++
T Consensus 418 ~~~a~~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~-GI~vvMiTGDn--------~~TA~aIA~elGId~v~ 488 (679)
T PRK01122 418 DEVARKGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKM-GIKTVMITGDN--------PLTAAAIAAEAGVDDFL 488 (679)
T ss_pred HHHHhCCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHC-CCeEEEECCCC--------HHHHHHHHHHcCCcEEE
Confidence 345678999999988988762 12345789999999999997 99999999986 78999999999997665
Q ss_pred ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---ccccceee
Q 022336 254 HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPGPVVI 294 (299)
Q Consensus 254 ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gAn~~~ 294 (299)
.. -.|...+ ++.+.+.-.-+-++|+||..+| +..|..=|
T Consensus 489 A~-~~PedK~-~iV~~lQ~~G~~VaMtGDGvNDAPALa~ADVGI 530 (679)
T PRK01122 489 AE-ATPEDKL-ALIRQEQAEGRLVAMTGDGTNDAPALAQADVGV 530 (679)
T ss_pred cc-CCHHHHH-HHHHHHHHcCCeEEEECCCcchHHHHHhCCEeE
Confidence 44 3665432 2334444344569999999999 55565443
No 144
>PLN02887 hydrolase family protein
Probab=97.66 E-value=9.5e-05 Score=76.65 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=52.9
Q ss_pred HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 177 ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
......||+|++|+||||. ..+..+.+...++|+++++. |+.++|+|+++ ...+..+.+.+|+
T Consensus 302 ~~~~~~iKLIa~DLDGTLL-n~d~~Is~~t~eAI~kl~ek-Gi~~vIATGR~--------~~~i~~~l~~L~l 364 (580)
T PLN02887 302 RFYKPKFSYIFCDMDGTLL-NSKSQISETNAKALKEALSR-GVKVVIATGKA--------RPAVIDILKMVDL 364 (580)
T ss_pred hhhccCccEEEEeCCCCCC-CCCCccCHHHHHHHHHHHHC-CCeEEEEcCCC--------HHHHHHHHHHhCc
Confidence 3445789999999999999 45567999999999999997 99999999998 6677777777654
No 145
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.65 E-value=0.00026 Score=65.68 Aligned_cols=107 Identities=14% Similarity=0.026 Sum_probs=65.1
Q ss_pred HcCCcEEEEeccCeeec-------------------------CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCC
Q 022336 180 RRGFKGVVFDKDNTLTA-------------------------PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYD 234 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~-------------------------p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d 234 (299)
..|--++|||+|.|+.. .+....-|++.++++.+++. |++|+++|+...
T Consensus 74 ~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~-G~~Vf~lTGR~e----- 147 (229)
T TIGR01675 74 GDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIEL-GIKIFLLSGRWE----- 147 (229)
T ss_pred CCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHC-CCEEEEEcCCCh-----
Confidence 45889999999999762 01122457788889999997 999999999972
Q ss_pred ccHHHHHHHHHHcCCcEE---Ecc----CCCCHHHHHH-HHHHhCCC-CCcEEEEcCCcccccccce
Q 022336 235 NDASKARKLEGKIGIKVI---RHR----VKKPAGTAEE-IEKHFGCQ-SSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 235 ~~~e~a~~~lk~LGI~vI---~ha----~KKP~p~le~-alk~lGi~-PeEiamVGDrl~DI~gAn~ 292 (299)
...+.+..-++..|++.. ... ..|....++. ..+++--+ -.=+.+|||++.|+.|+..
T Consensus 148 ~~r~~T~~nL~~~G~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~~~ 214 (229)
T TIGR01675 148 ELRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPP 214 (229)
T ss_pred HHHHHHHHHHHHcCCCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCCCc
Confidence 112335555666787632 211 1222111221 11111111 2226889999999888764
No 146
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.65 E-value=9.7e-05 Score=67.12 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=45.5
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
+|++|+||||.. . ....++..++|+++++. |++++++|+++ ...+..+.+.+|+
T Consensus 1 li~~DlDGTLl~-~-~~~~~~~~~ai~~l~~~-G~~~vi~TgR~--------~~~~~~~~~~lg~ 54 (225)
T TIGR02461 1 VIFTDLDGTLLP-P-GYEPGPAREALEELKDL-GFPIVFVSSKT--------RAEQEYYREELGV 54 (225)
T ss_pred CEEEeCCCCCcC-C-CCCchHHHHHHHHHHHC-CCEEEEEeCCC--------HHHHHHHHHHcCC
Confidence 489999999994 3 34667899999999997 99999999997 6677888888886
No 147
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.62 E-value=0.00024 Score=61.74 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=66.8
Q ss_pred HcCCcEEEEeccCeeecCC----------------------------------CcccCchHHHHHHHHHHhCCCcEEEEe
Q 022336 180 RRGFKGVVFDKDNTLTAPY----------------------------------SLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~----------------------------------~~~l~Pgv~e~L~~Lke~fGikVaIVS 225 (299)
+.+-..+|+|+|.||.--. ...+.|++.++|++|++ +++++|+|
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~--~yel~I~T 80 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASK--LYEMHVYT 80 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHh--hcEEEEEe
Confidence 4566789999999997200 01146899999999986 58999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHcCCc-EEE-c------cCCCCHHHHHHHHHHhCCCCCcEEEEcCCcc
Q 022336 226 NSAGLYEYDNDASKARKLEGKIGIK-VIR-H------RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRI 285 (299)
Q Consensus 226 NnaGs~~~d~~~e~a~~~lk~LGI~-vI~-h------a~KKP~p~le~alk~lGi~PeEiamVGDrl~ 285 (299)
|+. .+.|..+++.++.. .++ + .+..+ ..+.+-..+|.+.+.+++|.|+..
T Consensus 81 ~~~--------~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~--~~KdL~~i~~~d~~~vvivDd~~~ 138 (156)
T TIGR02250 81 MGT--------RAYAQAIAKLIDPDGKYFGDRIISRDESGSP--HTKSLLRLFPADESMVVIIDDRED 138 (156)
T ss_pred CCc--------HHHHHHHHHHhCcCCCeeccEEEEeccCCCC--ccccHHHHcCCCcccEEEEeCCHH
Confidence 998 78899999998764 122 1 22222 123332456889999999999874
No 148
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.60 E-value=0.00033 Score=73.84 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=78.7
Q ss_pred HHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 177 ELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
.+.+.|.+.+++-.|+++.. .-...+.|++.+.+++|++. |+++.++|+-. ...+..+++++|+..++.
T Consensus 415 ~~a~~G~~~l~v~~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~-GI~vvMiTGDn--------~~TA~aIA~elGI~~v~A 485 (673)
T PRK14010 415 GVSKKGGTPLVVLEDNEILGVIYLKDVIKDGLVERFRELREM-GIETVMCTGDN--------ELTAATIAKEAGVDRFVA 485 (673)
T ss_pred HHHhCCCeEEEEEECCEEEEEEEeecCCcHHHHHHHHHHHHC-CCeEEEECCCC--------HHHHHHHHHHcCCceEEc
Confidence 45678999887766777651 12445779999999999997 99999999986 789999999999976654
Q ss_pred cCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---ccccceee
Q 022336 255 RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPGPVVI 294 (299)
Q Consensus 255 a~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gAn~~~ 294 (299)
. -+|.-.+ ++.+.+.-.-+-++|+||..+| +..|..=|
T Consensus 486 ~-~~PedK~-~iV~~lQ~~G~~VaMtGDGvNDAPALa~ADVGI 526 (673)
T PRK14010 486 E-CKPEDKI-NVIREEQAKGHIVAMTGDGTNDAPALAEANVGL 526 (673)
T ss_pred C-CCHHHHH-HHHHHHHhCCCEEEEECCChhhHHHHHhCCEEE
Confidence 4 3665432 3444444444669999999999 55555433
No 149
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=97.56 E-value=0.00033 Score=65.18 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=55.6
Q ss_pred cCchHHHHHHHHHH-hCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE-----------------------EccCC
Q 022336 202 LWGPLSSSIEQCKS-VFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI-----------------------RHRVK 257 (299)
Q Consensus 202 l~Pgv~e~L~~Lke-~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI-----------------------~ha~K 257 (299)
+.|+..++++.+.+ ..|+.++|+|... .-.++.++++.|+..+ .|.++
T Consensus 72 ~~pgm~~~l~~l~~~~~~~~~~IiSDaN--------s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~ 143 (234)
T PF06888_consen 72 IDPGMKELLRFLAKNQRGFDLIIISDAN--------SFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCS 143 (234)
T ss_pred CCccHHHHHHHHHhcCCCceEEEEeCCc--------HhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCC
Confidence 34555666667732 3489999999987 6688888988886321 12222
Q ss_pred C-C-HH----HHHHHHHH---hCCCCCcEEEEcCCcccccccce
Q 022336 258 K-P-AG----TAEEIEKH---FGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 258 K-P-~p----~le~alk~---lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
. | .- .++++++. -|+.-++++||||..+|+.++.+
T Consensus 144 ~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~ 187 (234)
T PF06888_consen 144 LCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALR 187 (234)
T ss_pred cCCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccc
Confidence 1 2 11 14555554 36788999999999999887765
No 150
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=97.56 E-value=0.00015 Score=66.01 Aligned_cols=56 Identities=23% Similarity=0.438 Sum_probs=45.6
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.|++|+||||..... ...+...++++++++. |++++|+|+++ ...+..+.+.+|+.
T Consensus 1 li~~DlDGTll~~~~-~~~~~~~~~i~~l~~~-g~~~~~~TgR~--------~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 1 WIFTDLDGTLLDPHG-YDWGPAKEVLERLQEL-GIPVIPCTSKT--------AAEVEYLRKELGLE 56 (256)
T ss_pred CEEEcCCCCCcCCCC-cCchHHHHHHHHHHHC-CCeEEEEcCCC--------HHHHHHHHHHcCCC
Confidence 479999999994433 2444689999999997 99999999987 67788888888863
No 151
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.55 E-value=0.00014 Score=67.82 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=45.2
Q ss_pred CcEEEEeccCeeecC----CCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 183 FKGVVFDKDNTLTAP----YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 183 IRaLVlD~DNTLT~p----~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
-++|++|+||||+.. ....+.++..++|++|.+..|+.++|+|+.. ...+..+.+.++
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~--------~~~~~~~~~~~~ 75 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRS--------MVELDALAKPYR 75 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCC--------HHHHHHhcCccc
Confidence 478999999999952 4567889999999999873389999999987 555555555444
No 152
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.55 E-value=0.00032 Score=75.62 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=74.4
Q ss_pred HHHHcCCcEEEEeccC-----eeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 177 ELQRRGFKGVVFDKDN-----TLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DN-----TLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
.+.+.|.|++.+=.++ ++.. .-...+.|++.+.+++|+++ |++++++|+.. ...+..+++++|+
T Consensus 497 ~~a~~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~~i~~l~~~-Gi~v~miTGD~--------~~tA~~ia~~~Gi 567 (884)
T TIGR01522 497 EMASAGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKEAVTTLITG-GVRIIMITGDS--------QETAVSIARRLGM 567 (884)
T ss_pred HHHhcCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHHHHHHHHHC-CCeEEEECCCC--------HHHHHHHHHHcCC
Confidence 4567899999886655 3321 23456789999999999997 99999999997 7899999999998
Q ss_pred c---------------------------EEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccc
Q 022336 250 K---------------------------VIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFP 289 (299)
Q Consensus 250 ~---------------------------vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~g 289 (299)
. .++ +...|... .++++.+.-..+.++||||+.+|+-+
T Consensus 568 ~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vf-ar~~P~~K-~~iv~~lq~~g~~v~mvGDGvND~pA 632 (884)
T TIGR01522 568 PSKTSQSVSGEKLDAMDDQQLSQIVPKVAVF-ARASPEHK-MKIVKALQKRGDVVAMTGDGVNDAPA 632 (884)
T ss_pred CCCCCceeEhHHhHhCCHHHHHHHhhcCeEE-EECCHHHH-HHHHHHHHHCCCEEEEECCCcccHHH
Confidence 4 122 22355432 33445454456899999999999433
No 153
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.51 E-value=0.00051 Score=65.46 Aligned_cols=104 Identities=10% Similarity=-0.037 Sum_probs=62.0
Q ss_pred CCcEEEEeccCeeec-------------C------C-------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCc
Q 022336 182 GFKGVVFDKDNTLTA-------------P------Y-------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDN 235 (299)
Q Consensus 182 GIRaLVlD~DNTLT~-------------p------~-------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~ 235 (299)
|-.++|||+|.|+.. + . ....-|++.+.++.+++. |++|++|||..+.
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~-G~kIf~VSgR~e~----- 173 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSL-GFKIIFLSGRLKD----- 173 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHC-CCEEEEEeCCchh-----
Confidence 568999999999861 1 1 112346777888889887 9999999999731
Q ss_pred cHHHHHHHHHHcCCcE---EEc--c---CCCCHHHHHHH-HHHh-CCCCCcEEEEcCCcccccccc
Q 022336 236 DASKARKLEGKIGIKV---IRH--R---VKKPAGTAEEI-EKHF-GCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 236 ~~e~a~~~lk~LGI~v---I~h--a---~KKP~p~le~a-lk~l-Gi~PeEiamVGDrl~DI~gAn 291 (299)
.++....-++..|.+. +.. . .++....++.. .+++ .-.-.=+.+|||++.|+.|+.
T Consensus 174 ~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~G~~ 239 (275)
T TIGR01680 174 KQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLKGEH 239 (275)
T ss_pred HHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhccCCC
Confidence 1333455556678743 211 1 11221122211 1111 111223688999999988774
No 154
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.0006 Score=62.21 Aligned_cols=77 Identities=12% Similarity=0.026 Sum_probs=53.3
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC----Cc---EE-----Ec---------------
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG----IK---VI-----RH--------------- 254 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG----I~---vI-----~h--------------- 254 (299)
+.|+..+.++.+++. +++++|||..- ...+..+.+.++ +. .+ .|
T Consensus 74 Idp~fKef~e~ike~-di~fiVvSsGm--------~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~f 144 (220)
T COG4359 74 IDPGFKEFVEWIKEH-DIPFIVVSSGM--------DPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQF 144 (220)
T ss_pred cCccHHHHHHHHHHc-CCCEEEEeCCC--------chHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCcccc
Confidence 456667777778887 99999999975 556777777664 21 11 11
Q ss_pred cCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 255 RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 255 a~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
+.-|+ ..+..+.-.++-++|+||+..|+.||++
T Consensus 145 G~dK~-----~vI~~l~e~~e~~fy~GDsvsDlsaakl 177 (220)
T COG4359 145 GHDKS-----SVIHELSEPNESIFYCGDSVSDLSAAKL 177 (220)
T ss_pred CCCcc-----hhHHHhhcCCceEEEecCCcccccHhhh
Confidence 12233 3345555577889999999999999986
No 155
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.0011 Score=71.43 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=79.4
Q ss_pred HHHHHcCCcEEEEeccCeeecCC--CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPY--SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~--~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
++....|..++.+=+||+|+.-. ...+.|++...+..|++. |++++++|+-. ...|+.+++++|++.++
T Consensus 696 ~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~-Gi~v~mLTGDn--------~~aA~svA~~VGi~~V~ 766 (951)
T KOG0207|consen 696 TESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSM-GIKVVMLTGDN--------DAAARSVAQQVGIDNVY 766 (951)
T ss_pred hhHhhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhc-CceEEEEcCCC--------HHHHHHHHHhhCcceEE
Confidence 44557899999999999998422 445789999999999997 99999999976 67899999999997776
Q ss_pred ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 254 HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 254 ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
-.. +|.... +.++.+.-...-++||||.++|
T Consensus 767 aev-~P~~K~-~~Ik~lq~~~~~VaMVGDGIND 797 (951)
T KOG0207|consen 767 AEV-LPEQKA-EKIKEIQKNGGPVAMVGDGIND 797 (951)
T ss_pred ecc-CchhhH-HHHHHHHhcCCcEEEEeCCCCc
Confidence 544 665432 3445555556889999999998
No 156
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.33 E-value=0.00017 Score=61.07 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=61.8
Q ss_pred cEEEEeccCeeecCCC------------------cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHH
Q 022336 184 KGVVFDKDNTLTAPYS------------------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEG 245 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~------------------~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk 245 (299)
|.||||+||||..-.. ..+-|++.++|+.|.+. +.|+|.|.+. ...++.+.+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~--~ev~i~T~~~--------~~ya~~v~~ 70 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH--YEVVIWTSAS--------EEYAEPVLD 70 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH--CEEEEE-SS---------HHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh--ceEEEEEeeh--------hhhhhHHHH
Confidence 5799999999983211 22569999999999775 8999999987 778888888
Q ss_pred HcCC-----cEEE--ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccc--cccceee
Q 022336 246 KIGI-----KVIR--HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVI--FPGPVVI 294 (299)
Q Consensus 246 ~LGI-----~vI~--ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI--~gAn~~~ 294 (299)
.+.- ..+. ..+..-...+.+-+..+|-+.+++++|.|+..-. ...|.+.
T Consensus 71 ~ldp~~~~~~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~ 128 (159)
T PF03031_consen 71 ALDPNGKLFSRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIP 128 (159)
T ss_dssp HHTTTTSSEEEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE
T ss_pred hhhhhccccccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEE
Confidence 8763 1111 1121000011234455577899999999988752 2455543
No 157
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.002 Score=62.20 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=42.1
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaG 229 (299)
.++..++||-||+|+ ....+-|++.++++.|++. |-++.+|||++.
T Consensus 20 ~~~DtfifDcDGVlW--~g~~~ipGs~e~l~~L~~~-gK~i~fvTNNSt 65 (306)
T KOG2882|consen 20 DSFDTFIFDCDGVLW--LGEKPIPGSPEALNLLKSL-GKQIIFVTNNST 65 (306)
T ss_pred hhcCEEEEcCCccee--ecCCCCCChHHHHHHHHHc-CCcEEEEeCCCc
Confidence 689999999999999 4668889999999999997 989999999984
No 158
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0008 Score=64.86 Aligned_cols=136 Identities=18% Similarity=0.029 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCCCcCCccccCCcCCCCH-HHHHHcCCcEEEEeccCeeec---------------------CCCcccCch
Q 022336 148 VSSTVVFAKDRHLALPHVTVPDIRYIDW-AELQRRGFKGVVFDKDNTLTA---------------------PYSLTLWGP 205 (299)
Q Consensus 148 ~~~~~~~~~~p~ll~P~~~v~sI~~Id~-~~Lk~~GIRaLVlD~DNTLT~---------------------p~~~~l~Pg 205 (299)
.+++.. +++.. .+.-.|--|..-.+ +.|++.|++.+.-+.|+-.+. -+...-++.
T Consensus 93 ~~~a~y-lk~~~--~~~k~Vyvig~~gi~~eL~~aG~~~~g~~~~~~~~~~~~~~~~~~~~d~~VgAVvvg~D~hfsy~K 169 (306)
T KOG2882|consen 93 YAIADY-LKKRK--PFGKKVYVIGEEGIREELDEAGFEYFGGGPDGKDTDGAKSFVLSIGLDPDVGAVVVGYDEHFSYPK 169 (306)
T ss_pred HHHHHH-HHHhC--cCCCeEEEecchhhhHHHHHcCceeecCCCCcccccccccchhhcCCCCCCCEEEEecccccCHHH
Confidence 344444 44443 33344444444333 568888888887777764440 001112355
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCCCC-----C-CccHHHHHHHHHHcCCcEEEccCCCCHHH-HHHHHHHhCCCCCcEE
Q 022336 206 LSSSIEQCKSVFGHDIAVFSNSAGLYE-----Y-DNDASKARKLEGKIGIKVIRHRVKKPAGT-AEEIEKHFGCQSSQLI 278 (299)
Q Consensus 206 v~e~L~~Lke~fGikVaIVSNnaGs~~-----~-d~~~e~a~~~lk~LGI~vI~ha~KKP~p~-le~alk~lGi~PeEia 278 (299)
+..+++.|++ .-=+.|+||..+..- . --....+..+....|-..+.. .||.+. ++.++++++++|++++
T Consensus 170 L~kA~~yLqn--P~clflatn~D~~~p~~~~~~ipG~G~~v~av~~~t~R~P~v~--GKP~~~m~~~l~~~~~i~psRt~ 245 (306)
T KOG2882|consen 170 LMKALNYLQN--PGCLFLATNRDATTPPTPGVEIPGAGSFVAAVKFATGRQPIVL--GKPSTFMFEYLLEKFNIDPSRTC 245 (306)
T ss_pred HHHHHHHhCC--CCcEEEeccCccccCCCCCeeccCCccHHHHHHHHhcCCCeec--CCCCHHHHHHHHHHcCCCcceEE
Confidence 6666666654 244778899875321 0 011345666666666544433 488874 7889999999999999
Q ss_pred EEcCCccc-cccc
Q 022336 279 MVDMCRIV-IFPG 290 (299)
Q Consensus 279 mVGDrl~D-I~gA 290 (299)
|||||+.| |.=|
T Consensus 246 mvGDRL~TDIlFG 258 (306)
T KOG2882|consen 246 MVGDRLDTDILFG 258 (306)
T ss_pred EEcccchhhhhHh
Confidence 99999998 6544
No 159
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=97.24 E-value=0.0016 Score=56.56 Aligned_cols=92 Identities=18% Similarity=0.178 Sum_probs=68.5
Q ss_pred cEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc-cCCCCHHH
Q 022336 184 KGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH-RVKKPAGT 262 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h-a~KKP~p~ 262 (299)
...+.|+++|++.- -.+.+++.+.+++|.+. +.|+|.|.-. ...+..+++..|+++-+- +...|. .
T Consensus 15 d~~~~~v~~tiatg--Gklf~ev~e~iqeL~d~--V~i~IASgDr--------~gsl~~lae~~gi~~~rv~a~a~~e-~ 81 (152)
T COG4087 15 DSKAGKVLYTIATG--GKLFSEVSETIQELHDM--VDIYIASGDR--------KGSLVQLAEFVGIPVERVFAGADPE-M 81 (152)
T ss_pred eeecceEEEEEccC--cEEcHhhHHHHHHHHHh--heEEEecCCc--------chHHHHHHHHcCCceeeeecccCHH-H
Confidence 44567899999933 36789999999999996 8999999875 556777888889875432 111221 1
Q ss_pred HHHHHHHhCCCCCcEEEEcCCccccc
Q 022336 263 AEEIEKHFGCQSSQLIMVDMCRIVIF 288 (299)
Q Consensus 263 le~alk~lGi~PeEiamVGDrl~DI~ 288 (299)
-.++++.++-.-+-|+||||..+|+.
T Consensus 82 K~~ii~eLkk~~~k~vmVGnGaND~l 107 (152)
T COG4087 82 KAKIIRELKKRYEKVVMVGNGANDIL 107 (152)
T ss_pred HHHHHHHhcCCCcEEEEecCCcchHH
Confidence 24677888877799999999999943
No 160
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=97.21 E-value=0.00052 Score=58.45 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE--EEc-cC----------------C--CCHHH
Q 022336 204 GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV--IRH-RV----------------K--KPAGT 262 (299)
Q Consensus 204 Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v--I~h-a~----------------K--KP~p~ 262 (299)
+++.+.|+.+++. |++++|+|.+. ...++.+++.+|++. +.. .. . |.. .
T Consensus 92 ~~~~e~i~~~~~~-~~~v~IvS~~~--------~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~-~ 161 (192)
T PF12710_consen 92 PDAMELIRELKDN-GIKVVIVSGSP--------DEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAE-A 161 (192)
T ss_dssp TTHHHHHHHHHHT-TSEEEEEEEEE--------HHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHH-H
T ss_pred hhHHHHHHHHHHC-CCEEEEECCCc--------HHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHH-H
Confidence 7777999999997 99999999997 789999999999864 211 00 0 221 2
Q ss_pred HHHH---HHHhCCCCCcEEEEcCCcccccc
Q 022336 263 AEEI---EKHFGCQSSQLIMVDMCRIVIFP 289 (299)
Q Consensus 263 le~a---lk~lGi~PeEiamVGDrl~DI~g 289 (299)
+.++ ... +.....+++|||+..|+.+
T Consensus 162 l~~~~~~~~~-~~~~~~~~~iGDs~~D~~~ 190 (192)
T PF12710_consen 162 LKELYIRDEE-DIDPDRVIAIGDSINDLPM 190 (192)
T ss_dssp HHHHHHHHHH-THTCCEEEEEESSGGGHHH
T ss_pred HHHHHHHhhc-CCCCCeEEEEECCHHHHHH
Confidence 3333 223 8899999999999999754
No 161
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.20 E-value=0.00046 Score=62.77 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=44.2
Q ss_pred EEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 185 GVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 185 aLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
+|+.|+||||.. .++....|...++++++.+. |+.++++|++. ...++.+.+.++
T Consensus 3 li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~-gi~fv~aTGR~--------~~~~~~~~~~~~ 59 (249)
T TIGR01485 3 LLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGE-DSLLVYSTGRS--------PHSYKELQKQKP 59 (249)
T ss_pred EEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhcc-CceEEEEcCCC--------HHHHHHHHhcCC
Confidence 688999999994 25666789999999999887 89999999987 566666666554
No 162
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=97.19 E-value=0.001 Score=64.93 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=63.4
Q ss_pred cEEEEeccCeeecCCCcccCchHHHHHHHHHHhC---CCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEcc---CC
Q 022336 184 KGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVF---GHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHR---VK 257 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~f---GikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha---~K 257 (299)
=+++||+||+|. ....+-|++.++|+.|.+.. .++.+++||..|+.+ ..+++.+.+.||+.+-... ..
T Consensus 36 fgfafDIDGVL~--RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E----~~rA~~lS~~Lgv~Vs~dqviqSH 109 (389)
T KOG1618|consen 36 FGFAFDIDGVLF--RGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILE----SSRAQELSALLGVEVSADQVIQSH 109 (389)
T ss_pred eeEEEecccEEE--ecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcch----hhHHHHHHHhhCCccCHHHHHhhc
Confidence 379999999999 44577889999999987642 378999999998764 6789999999998642110 11
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEcCCc
Q 022336 258 KPAGTAEEIEKHFGCQSSQLIMVDMCR 284 (299)
Q Consensus 258 KP~p~le~alk~lGi~PeEiamVGDrl 284 (299)
-| +.... ..+-+.+++||+.-
T Consensus 110 sP---~r~l~---~~~~k~vLv~G~~~ 130 (389)
T KOG1618|consen 110 SP---FRLLV---EYHYKRVLVVGQGS 130 (389)
T ss_pred Ch---HHHHh---hhhhceEEEecCCc
Confidence 23 22222 24567888888643
No 163
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.11 E-value=0.0025 Score=67.84 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=75.2
Q ss_pred HHHHHcCCcEEEEec---cC--eeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 176 AELQRRGFKGVVFDK---DN--TLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~---DN--TLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
+.+.+.|.|++.+=. ++ ++.. .-...+.|++.+.+++|++. |+++.++|+.. ...++.+++++|
T Consensus 410 ~~~~~~G~rvl~vA~~~~e~~l~~~Gli~l~Dp~R~~a~~aI~~l~~a-GI~v~miTGD~--------~~tA~~IA~~lG 480 (755)
T TIGR01647 410 DELASRGYRALGVARTDEEGRWHFLGLLPLFDPPRHDTKETIERARHL-GVEVKMVTGDH--------LAIAKETARRLG 480 (755)
T ss_pred HHHHhCCCEEEEEEEEcCCCCcEEEEEeeccCCChhhHHHHHHHHHHC-CCeEEEECCCC--------HHHHHHHHHHcC
Confidence 456678999888754 33 4331 12445778999999999997 99999999987 788999999999
Q ss_pred CcE------------------------------EEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---ccccceee
Q 022336 249 IKV------------------------------IRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPGPVVI 294 (299)
Q Consensus 249 I~v------------------------------I~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gAn~~~ 294 (299)
+.. ++ +.-.|.-. .++.+.+.-.-+-++|+||..+| +..|+.=|
T Consensus 481 I~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vf-Ar~~Pe~K-~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGI 557 (755)
T TIGR01647 481 LGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGF-AEVFPEHK-YEIVEILQKRGHLVGMTGDGVNDAPALKKADVGI 557 (755)
T ss_pred CCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEE-EecCHHHH-HHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeE
Confidence 842 11 22344432 12334444444679999999999 66666544
No 164
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=97.10 E-value=0.0026 Score=67.08 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=46.8
Q ss_pred HHHcCCcEEEEeccCeeecCC----CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 178 LQRRGFKGVVFDKDNTLTAPY----SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 178 Lk~~GIRaLVlD~DNTLT~p~----~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
.+....|+|+||+||||++.. ...+.++..+.|++|.+.-|+.|+|+|+.. ...++.+...++
T Consensus 487 y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~--------~~~l~~~~~~~~ 553 (726)
T PRK14501 487 YRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRD--------RDTLERWFGDLP 553 (726)
T ss_pred HHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC--------HHHHHHHhCCCC
Confidence 345678999999999999532 234678999999999883389999999986 455555544443
No 165
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.03 E-value=0.0049 Score=66.60 Aligned_cols=84 Identities=12% Similarity=0.026 Sum_probs=61.0
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc-------------------------EEEc
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK-------------------------VIRH 254 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~-------------------------vI~h 254 (299)
..+-|++.+++++|+++ |+++.++|+-. ...+..+++++|+. .++
T Consensus 514 Dp~R~~~~~aI~~l~~a-GI~vvmiTGD~--------~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vf- 583 (867)
T TIGR01524 514 DPPKESTKEAIAALFKN-GINVKVLTGDN--------EIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHIF- 583 (867)
T ss_pred CCCchhHHHHHHHHHHC-CCEEEEEcCCC--------HHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEE-
Confidence 34678999999999997 99999999976 77899999999985 222
Q ss_pred cCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---ccccceee
Q 022336 255 RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPGPVVI 294 (299)
Q Consensus 255 a~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gAn~~~ 294 (299)
+.-.|.-.+ ++.+.+.-.-+.++|+||..+| +..|+.=|
T Consensus 584 Ar~~Pe~K~-~iV~~lq~~G~vVam~GDGvNDapALk~AdVGI 625 (867)
T TIGR01524 584 ARLTPMQKS-RIIGLLKKAGHTVGFLGDGINDAPALRKADVGI 625 (867)
T ss_pred EECCHHHHH-HHHHHHHhCCCEEEEECCCcccHHHHHhCCEEE
Confidence 223554321 2333333334679999999999 66666544
No 166
>PLN02580 trehalose-phosphatase
Probab=97.03 E-value=0.0015 Score=64.90 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=48.5
Q ss_pred HHHHcCCcEEEEeccCeeec----CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 177 ELQRRGFKGVVFDKDNTLTA----PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~----p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
.+++..-.+|+||.||||++ |....+.+++.+.|++|.+. .+|+|||+.. .+.++.+....++
T Consensus 113 ~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~--~~VAIVSGR~--------~~~L~~~l~~~~l 179 (384)
T PLN02580 113 NFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY--FPTAIISGRS--------RDKVYELVGLTEL 179 (384)
T ss_pred HHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC--CCEEEEeCCC--------HHHHHHHhCCCCc
Confidence 34455678999999999984 55666889999999999886 5899999997 6666666654333
No 167
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.02 E-value=0.0041 Score=56.43 Aligned_cols=94 Identities=22% Similarity=0.168 Sum_probs=65.1
Q ss_pred HcCCcEEEEeccCeeecCCC------cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc---
Q 022336 180 RRGFKGVVFDKDNTLTAPYS------LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK--- 250 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~~------~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~--- 250 (299)
+.|-|.+|||+|+||..... ...-|++.++|+.+.+ .+.|+|.|... ..-|..+...+|+.
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~--~feIvVwTAa~--------~~ya~~~l~~l~~~~~~ 87 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYE--DYDIVIWSATS--------MKWIEIKMTELGVLTNP 87 (195)
T ss_pred CCCCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHh--CCEEEEEecCC--------HHHHHHHHHHhcccCCc
Confidence 47889999999999993211 2245899999999988 48999999986 67888888887641
Q ss_pred -----EEEccC--------------CCCHHHHHHHHHHhC--CCCCcEEEEcCCccc
Q 022336 251 -----VIRHRV--------------KKPAGTAEEIEKHFG--CQSSQLIMVDMCRIV 286 (299)
Q Consensus 251 -----vI~ha~--------------KKP~p~le~alk~lG--i~PeEiamVGDrl~D 286 (299)
.+...+ -|+ +..+-+.+| .+.+++++|.|...-
T Consensus 88 ~~~i~~~ld~~~~~~~~~~~~g~~~vKd---L~~lw~~l~~~~~~~ntiiVDd~p~~ 141 (195)
T TIGR02245 88 NYKITFLLDSTAMITVHTPRRGKFDVKP---LGVIWALLPEFYSMKNTIMFDDLRRN 141 (195)
T ss_pred cceEEEEeccccceeeEeeccCcEEEee---cHHhhhhcccCCCcccEEEEeCCHHH
Confidence 111110 122 222333454 378999999998765
No 168
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.94 E-value=0.0051 Score=66.85 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=72.7
Q ss_pred HHHHcCCcEEEEec----------------cCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHH
Q 022336 177 ELQRRGFKGVVFDK----------------DNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDAS 238 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~----------------DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e 238 (299)
.+.+.|.|++.+=. |.++.. --...+-|++.+++++|+++ |+++.++|+-. ..
T Consensus 508 ~~a~~G~rvlavA~k~~~~~~~~~~~~~e~~l~~lGli~~~Dp~R~~a~~aI~~l~~a-GI~v~miTGD~--------~~ 578 (902)
T PRK10517 508 TLNRQGLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKAS-GVTVKILTGDS--------EL 578 (902)
T ss_pred HHHhcCCEEEEEEEecCCccccccccccccCceeeehHhhhCcchhhHHHHHHHHHHC-CCEEEEEcCCC--------HH
Confidence 45568888877632 223331 01334678999999999997 99999999976 67
Q ss_pred HHHHHHHHcCCc-------------------------EEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---cccc
Q 022336 239 KARKLEGKIGIK-------------------------VIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPG 290 (299)
Q Consensus 239 ~a~~~lk~LGI~-------------------------vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gA 290 (299)
.+..+++++||. .++ +.-.|.-. .++.+.+.-.-+-|+|+||..+| +..|
T Consensus 579 tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~Vf-Ar~sPe~K-~~IV~~Lq~~G~vVam~GDGvNDaPALk~A 656 (902)
T PRK10517 579 VAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLF-ARLTPMHK-ERIVTLLKREGHVVGFMGDGINDAPALRAA 656 (902)
T ss_pred HHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEE-EEcCHHHH-HHHHHHHHHCCCEEEEECCCcchHHHHHhC
Confidence 899999999985 222 22355432 23334343344679999999999 6666
Q ss_pred ceeee
Q 022336 291 PVVIF 295 (299)
Q Consensus 291 n~~~~ 295 (299)
..=|.
T Consensus 657 DVGIA 661 (902)
T PRK10517 657 DIGIS 661 (902)
T ss_pred CEEEE
Confidence 65443
No 169
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.87 E-value=0.0024 Score=63.54 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=73.3
Q ss_pred cCCcEEEEeccCeeecC----------CCc-ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCC----ccHHHHHHHHH
Q 022336 181 RGFKGVVFDKDNTLTAP----------YSL-TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYD----NDASKARKLEG 245 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p----------~~~-~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d----~~~e~a~~~lk 245 (299)
-+.|.+.||.||||..- .++ .+++++...|+++.+. |++++|.||+.|+.+.. .....++.+.+
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~-g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~a 151 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQD-GIKLFIFTNQNGIARGKLELEEFKKKIKAIVA 151 (422)
T ss_pred CCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccC-CeEEEEEecccccccCcchHHHHHHHHHHHHH
Confidence 57789999999999731 111 2568888889999887 99999999999987533 33457788888
Q ss_pred HcCCcEEEc------cCCCCHHH-HHHHHHHh--CCCC--CcEEEEcCCccc
Q 022336 246 KIGIKVIRH------RVKKPAGT-AEEIEKHF--GCQS--SQLIMVDMCRIV 286 (299)
Q Consensus 246 ~LGI~vI~h------a~KKP~p~-le~alk~l--Gi~P--eEiamVGDrl~D 286 (299)
.+|+++... ..+||..+ ++...+.. ++.. ....||||-..-
T Consensus 152 nl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr 203 (422)
T KOG2134|consen 152 NLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGR 203 (422)
T ss_pred hcCCceEEeeeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhccC
Confidence 899986543 24788765 33333333 3334 445599996544
No 170
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.86 E-value=0.0021 Score=60.25 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=46.8
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.-+++|++|+||||.+ +. .-+.++..++.+|++. |++|+.+|++. ......+-+.||++
T Consensus 5 ~~~~lIFtDlD~TLl~-~~-ye~~pA~pv~~el~d~-G~~Vi~~SSKT--------~aE~~~l~~~l~v~ 63 (274)
T COG3769 5 QMPLLIFTDLDGTLLP-HS-YEWQPAAPVLLELKDA-GVPVILCSSKT--------RAEMLYLQKSLGVQ 63 (274)
T ss_pred ccceEEEEcccCcccC-CC-CCCCccchHHHHHHHc-CCeEEEeccch--------HHHHHHHHHhcCCC
Confidence 4678999999999994 22 3345677889999997 99999999997 56666677788864
No 171
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.82 E-value=0.0053 Score=62.84 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=63.7
Q ss_pred HcCCcEEEEeccCeeec-----CC--CcccC--------chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHH
Q 022336 180 RRGFKGVVFDKDNTLTA-----PY--SLTLW--------GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLE 244 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~-----p~--~~~l~--------Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~l 244 (299)
..--|++|||+||||+. ++ ...+. -...+.+..++++ |+-++|+|=+. ...|+.+.
T Consensus 219 g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kq-GVlLav~SKN~--------~~da~evF 289 (574)
T COG3882 219 GKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQ-GVLLAVCSKNT--------EKDAKEVF 289 (574)
T ss_pred CcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhc-cEEEEEecCCc--------hhhHHHHH
Confidence 35679999999999982 11 11121 2334567778887 99999999886 55565554
Q ss_pred HHcC--------CcEEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 245 GKIG--------IKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 245 k~LG--------I~vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
...- +.++--.--.....+.++++++|+-.+-.+||.|...-
T Consensus 290 ~khp~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~E 339 (574)
T COG3882 290 RKHPDMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAE 339 (574)
T ss_pred hhCCCeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHH
Confidence 4321 11110011112234899999999999999999998653
No 172
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.79 E-value=0.0077 Score=65.56 Aligned_cols=108 Identities=11% Similarity=0.147 Sum_probs=72.8
Q ss_pred HHHHHcCCcEEEEec-c-------------C--eeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccH
Q 022336 176 AELQRRGFKGVVFDK-D-------------N--TLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDA 237 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~-D-------------N--TLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~ 237 (299)
+.+.+.|.|++.|=. | + ++.. --...+.|++.+++++|+++ |+++.++|+-. .
T Consensus 536 ~~~a~~G~Rvl~~A~~~~~~~~~~~~~~~e~~l~~lGli~~~Dplr~~~~~aI~~l~~a-GI~v~miTGD~--------~ 606 (941)
T TIGR01517 536 EPLASDALRTICLAYRDFAPEEFPRKDYPNGGLTLIGVVGIKDPLRPGVREAVQECQRA-GITVRMVTGDN--------I 606 (941)
T ss_pred HHHHhcCCEEEEEEEEecCccccccccccccCcEEEEEeeccCCCchhHHHHHHHHHHC-CCEEEEECCCC--------h
Confidence 345678999887632 1 1 2220 12335678999999999997 99999999986 7
Q ss_pred HHHHHHHHHcCCc---------------------------EEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---c
Q 022336 238 SKARKLEGKIGIK---------------------------VIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---I 287 (299)
Q Consensus 238 e~a~~~lk~LGI~---------------------------vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I 287 (299)
..|..+++++|+. .++ +.-.|.-. .++.+.+.-.-+-|+||||..+| +
T Consensus 607 ~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vf-ar~sPe~K-~~iV~~lq~~g~vVam~GDGvNDapAL 684 (941)
T TIGR01517 607 DTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVL-ARSSPLDK-QLLVLMLKDMGEVVAVTGDGTNDAPAL 684 (941)
T ss_pred HHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEE-EECCHHHH-HHHHHHHHHCCCEEEEECCCCchHHHH
Confidence 7899999999984 233 23355432 12333333334579999999999 6
Q ss_pred cccceee
Q 022336 288 FPGPVVI 294 (299)
Q Consensus 288 ~gAn~~~ 294 (299)
..|+.=|
T Consensus 685 k~AdVGI 691 (941)
T TIGR01517 685 KLADVGF 691 (941)
T ss_pred HhCCcce
Confidence 6666544
No 173
>PLN03017 trehalose-phosphatase
Probab=96.77 E-value=0.0034 Score=62.04 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=43.5
Q ss_pred cCCcEEEEeccCeee---c-CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHH
Q 022336 181 RGFKGVVFDKDNTLT---A-PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEG 245 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT---~-p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk 245 (299)
..-.+|++|+||||+ . |....+.++..+.|++|.+ |+.++|+|++. ...+..+..
T Consensus 109 ~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La~--~~~vaIvSGR~--------~~~l~~~~~ 167 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLAK--CFPTAIVTGRC--------IDKVYNFVK 167 (366)
T ss_pred CCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHhc--CCcEEEEeCCC--------HHHHHHhhc
Confidence 345788899999999 2 4455789999999999994 78999999997 556665543
No 174
>PLN02423 phosphomannomutase
Probab=96.75 E-value=0.003 Score=58.16 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=38.3
Q ss_pred HcCCcEEE-EeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 180 RRGFKGVV-FDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 180 ~~GIRaLV-lD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
++..|.|+ ||+||||. ..+..+.+...+++++|++ ++.++|+|++.
T Consensus 3 ~~~~~~i~~~D~DGTLl-~~~~~i~~~~~~ai~~l~~--~i~fviaTGR~ 49 (245)
T PLN02423 3 ARKPGVIALFDVDGTLT-APRKEATPEMLEFMKELRK--VVTVGVVGGSD 49 (245)
T ss_pred CCccceEEEEeccCCCc-CCCCcCCHHHHHHHHHHHh--CCEEEEECCcC
Confidence 35667666 99999999 5556788999999999996 49999999985
No 175
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=96.74 E-value=0.0051 Score=54.27 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=43.0
Q ss_pred EEEEeccCeeecCC----------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHc
Q 022336 185 GVVFDKDNTLTAPY----------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI 247 (299)
Q Consensus 185 aLVlD~DNTLT~p~----------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~L 247 (299)
.||.|+|||||.-+ .....+++.+.++.+.+. |++++=+|..+ .-.....+..++..
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~-GY~ilYlTaRp-----~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADN-GYKILYLTARP-----IGQANRTRSWLAQH 67 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHC-CeEEEEECcCc-----HHHHHHHHHHHHHH
Confidence 48999999999532 224678999999999997 99999999998 11234556666655
No 176
>PLN02151 trehalose-phosphatase
Probab=96.72 E-value=0.0026 Score=62.56 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=44.6
Q ss_pred CCcEEEEeccCeee----cCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHH
Q 022336 182 GFKGVVFDKDNTLT----APYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGK 246 (299)
Q Consensus 182 GIRaLVlD~DNTLT----~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~ 246 (299)
.-.+|+||.||||+ .|....+.++..+.|++|.+ +..++|+|+.. ...+..+...
T Consensus 97 ~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~--~~~vaIvSGR~--------~~~l~~~~~~ 155 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK--CFPTAIVSGRC--------REKVSSFVKL 155 (354)
T ss_pred CceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhc--CCCEEEEECCC--------HHHHHHHcCC
Confidence 45789999999999 56777889999999999985 57999999987 5556655543
No 177
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.66 E-value=0.0085 Score=65.14 Aligned_cols=85 Identities=11% Similarity=0.072 Sum_probs=61.7
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc-------------------------EEE
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK-------------------------VIR 253 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~-------------------------vI~ 253 (299)
...+-|++.+++++|+++ |+++.++|+-. ...+..+++++||. .++
T Consensus 548 ~Dp~R~~a~~aI~~l~~a-GI~v~miTGD~--------~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~Vf 618 (903)
T PRK15122 548 LDPPKESAAPAIAALREN-GVAVKVLTGDN--------PIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVF 618 (903)
T ss_pred cCccHHHHHHHHHHHHHC-CCeEEEECCCC--------HHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEE
Confidence 334678999999999997 99999999986 77899999999985 232
Q ss_pred ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---ccccceee
Q 022336 254 HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPGPVVI 294 (299)
Q Consensus 254 ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gAn~~~ 294 (299)
+.-.|.-. .++.+.+.-.-+-|+|+||..+| +..|+.=|
T Consensus 619 -Ar~sPe~K-~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGI 660 (903)
T PRK15122 619 -AKLTPLQK-SRVLKALQANGHTVGFLGDGINDAPALRDADVGI 660 (903)
T ss_pred -EEeCHHHH-HHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEE
Confidence 22355432 13334443344679999999999 66666544
No 178
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=96.53 E-value=0.0065 Score=55.02 Aligned_cols=81 Identities=11% Similarity=-0.003 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE----------EccCCCCHHHHHHHHHHhCCCCCc
Q 022336 207 SSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI----------RHRVKKPAGTAEEIEKHFGCQSSQ 276 (299)
Q Consensus 207 ~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI----------~ha~KKP~p~le~alk~lGi~PeE 276 (299)
.+.++.++.. +..+.|+++... .+......+.+.+.+++... ..+..|+ .+++.+++++|+++++
T Consensus 143 ~~~~~~~~~~-~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~-~~l~~l~~~~gi~~~e 217 (272)
T PRK10530 143 DSLAQAARQV-NAIWKFALTHED---LPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKG-KRLTQWVEAQGWSMKN 217 (272)
T ss_pred ccHHHHHhhc-CCcEEEEEecCC---HHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChH-HHHHHHHHHcCCCHHH
Confidence 3344444443 555667776531 00012234445555565321 1123343 2588999999999999
Q ss_pred EEEEcCCcccccccce
Q 022336 277 LIMVDMCRIVIFPGPV 292 (299)
Q Consensus 277 iamVGDrl~DI~gAn~ 292 (299)
+++|||+.+|+..++.
T Consensus 218 ~i~~GD~~NDi~m~~~ 233 (272)
T PRK10530 218 VVAFGDNFNDISMLEA 233 (272)
T ss_pred eEEeCCChhhHHHHHh
Confidence 9999999999665543
No 179
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.52 E-value=0.011 Score=56.53 Aligned_cols=72 Identities=22% Similarity=0.129 Sum_probs=42.3
Q ss_pred EEEEeCCCCCCC--CC---c-cHHHHHHHHH----HcCCcEEEccCCCCHHH-HHHHHHHh--------CC-----CCCc
Q 022336 221 IAVFSNSAGLYE--YD---N-DASKARKLEG----KIGIKVIRHRVKKPAGT-AEEIEKHF--------GC-----QSSQ 276 (299)
Q Consensus 221 VaIVSNnaGs~~--~d---~-~~e~a~~~lk----~LGI~vI~ha~KKP~p~-le~alk~l--------Gi-----~PeE 276 (299)
..|+||..-... .. + ....+..++. ..|.+.-.....||.+. ++.+++.+ ++ ++++
T Consensus 186 ~~i~~n~D~~~p~~~g~~~~g~Ga~~~~l~~~~~~~tg~~~~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 265 (321)
T TIGR01456 186 PIYFSNQDLLWANEYKLNRFGQGAFRLLLERIYLELNGKPLQYYTLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHA 265 (321)
T ss_pred CEEEeCCCEeeccCCCCceechHHHHHHHHHHHHHhcCCCcceEEcCCCChHHHHHHHHHHHHHHhhhccccccCCChhe
Confidence 578888753321 11 0 1233444444 24543111123588874 67777776 43 4579
Q ss_pred EEEEcCCc-ccccccce
Q 022336 277 LIMVDMCR-IVIFPGPV 292 (299)
Q Consensus 277 iamVGDrl-~DI~gAn~ 292 (299)
++||||++ .||.+|+.
T Consensus 266 ~~mIGD~~~tDI~ga~~ 282 (321)
T TIGR01456 266 LYMVGDNPASDIIGAQN 282 (321)
T ss_pred EEEEcCChhhhhhhHHh
Confidence 99999999 66999984
No 180
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=96.49 E-value=0.0023 Score=57.51 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=38.5
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
+|++|+||||. +.+..+.+ ..++++ +++. |+.++|+|+++ ...++.+.+.+++
T Consensus 1 li~~DlDgTLl-~~~~~~~~-~~~~~~-~~~~-gi~~viaTGR~--------~~~v~~~~~~l~l 53 (236)
T TIGR02471 1 LIITDLDNTLL-GDDEGLAS-FVELLR-GSGD-AVGFGIATGRS--------VESAKSRYAKLNL 53 (236)
T ss_pred CeEEecccccc-CCHHHHHH-HHHHHH-hcCC-CceEEEEeCCC--------HHHHHHHHHhCCC
Confidence 47899999999 44444544 336666 5665 99999999997 6777777776654
No 181
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=96.43 E-value=0.014 Score=55.22 Aligned_cols=96 Identities=16% Similarity=0.056 Sum_probs=62.0
Q ss_pred CcEEEEeccCeeec--C-----------------------CCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccH
Q 022336 183 FKGVVFDKDNTLTA--P-----------------------YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDA 237 (299)
Q Consensus 183 IRaLVlD~DNTLT~--p-----------------------~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~ 237 (299)
-++||+|+|-|+.. | ....+-||+.|+++..-+. |.+|..+||..-.. ..
T Consensus 79 ~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~-Gg~ifyiSNR~~~~----~~ 153 (274)
T COG2503 79 KKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSN-GGKIFYISNRDQEN----EK 153 (274)
T ss_pred CceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhc-CcEEEEEeccchhc----cc
Confidence 34999999999851 1 1222468899999988886 99999999997211 01
Q ss_pred HHHHHHHHHcCCcEE------EccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 238 SKARKLEGKIGIKVI------RHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 238 e~a~~~lk~LGI~vI------~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
.....=++.+|++.+ ....+|+...-.++++. .-+=++.|||.+.|
T Consensus 154 ~~T~~nLk~~g~~~~~~~~~llkk~~k~Ke~R~~~v~k---~~~iVm~vGDNl~D 205 (274)
T COG2503 154 DGTIENLKSEGLPQVLESHLLLKKDKKSKEVRRQAVEK---DYKIVMLVGDNLDD 205 (274)
T ss_pred chhHHHHHHcCcccccccceEEeeCCCcHHHHHHHHhh---ccceeeEecCchhh
Confidence 223334455677532 33456665543333333 55668899999988
No 182
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.37 E-value=0.011 Score=64.39 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=60.1
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE---------E-------------------
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV---------I------------------- 252 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v---------I------------------- 252 (299)
.+.|++.+.+++|+++ |+++.++|+.. .+.+..+++++|+.. +
T Consensus 537 plr~~v~e~I~~l~~a-GI~v~miTGD~--------~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~ 607 (917)
T TIGR01116 537 PPRPEVADAIEKCRTA-GIRVIMITGDN--------KETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRS 607 (917)
T ss_pred CCchhHHHHHHHHHHC-CCEEEEecCCC--------HHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhc
Confidence 4678999999999997 99999999876 678889999998731 0
Q ss_pred --EccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---ccccce
Q 022336 253 --RHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPGPV 292 (299)
Q Consensus 253 --~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gAn~ 292 (299)
..+.-.|.-. .++++.++-..+.++||||+.+| +..|+.
T Consensus 608 ~~v~ar~~P~~K-~~iV~~lq~~g~~va~iGDG~ND~~alk~AdV 651 (917)
T TIGR01116 608 AVLFSRVEPSHK-SELVELLQEQGEIVAMTGDGVNDAPALKKADI 651 (917)
T ss_pred CeEEEecCHHHH-HHHHHHHHhcCCeEEEecCCcchHHHHHhCCe
Confidence 1112233321 45666677677899999999999 444444
No 183
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.30 E-value=0.0092 Score=64.71 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=45.8
Q ss_pred CcCCCCHHHH----HHcCCcEEEEeccCeeecCC--CcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 169 DIRYIDWAEL----QRRGFKGVVFDKDNTLTAPY--SLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 169 sI~~Id~~~L----k~~GIRaLVlD~DNTLT~p~--~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
.+..++.+.+ +....|+|++|.||||++.. ...+.+++.+.|++|.+.-|..|+|+|+..
T Consensus 578 ~~~~l~~~~i~~~y~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~ 643 (854)
T PLN02205 578 NFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARS 643 (854)
T ss_pred cccccCHHHHHHHHHhhcCeEEEEecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 3666665444 56789999999999999444 346778999999998544488999999875
No 184
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=96.27 E-value=0.027 Score=56.66 Aligned_cols=96 Identities=15% Similarity=0.206 Sum_probs=72.0
Q ss_pred HHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 177 ELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
.+.+.|.+.+++=.|+++.. .-...+.+++.+.++.|++. |+++.++|... ...+..+.+.+|+ +
T Consensus 321 ~~~~~g~~~~~~a~~~~~~g~i~l~d~lr~~~~~~i~~l~~~-gi~~~~ltGD~--------~~~a~~ia~~lgi----~ 387 (499)
T TIGR01494 321 ELAQSGLRVLAVASKETLLGLLGLEDPLRDDAKETISELREA-GIRVIMLTGDN--------VLTAKAIAKELGI----F 387 (499)
T ss_pred HHHhCCCEEEEEEECCeEEEEEEecCCCchhHHHHHHHHHHC-CCeEEEEcCCC--------HHHHHHHHHHcCc----e
Confidence 35578999998888887652 23456788999999999996 99999999987 7889999999997 2
Q ss_pred cCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 255 RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 255 a~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
+...|.... ++.+.+.-.-..++||||..+|
T Consensus 388 ~~~~p~~K~-~~v~~l~~~g~~v~~vGDg~nD 418 (499)
T TIGR01494 388 ARVTPEEKA-ALVEALQKKGRVVAMTGDGVND 418 (499)
T ss_pred eccCHHHHH-HHHHHHHHCCCEEEEECCChhh
Confidence 334554322 3334333334789999999999
No 185
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=96.26 E-value=0.0094 Score=56.58 Aligned_cols=63 Identities=24% Similarity=0.196 Sum_probs=48.4
Q ss_pred HHcCCcEEEEeccCeeec----CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 179 QRRGFKGVVFDKDNTLTA----PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~----p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
...+-++++||.||||+. |....+.++..+.|.+|......-|+|+|... .+.++.+....|+
T Consensus 14 ~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~--------~~~l~~~~~v~~i 80 (266)
T COG1877 14 LNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRS--------LAELERLFGVPGI 80 (266)
T ss_pred ccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCC--------HHHHHHhcCCCCc
Confidence 346779999999999994 45556788999999999887445699999987 5666666664444
No 186
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.21 E-value=0.012 Score=63.22 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=51.5
Q ss_pred CCCHHHH----HHcCCcEEEEeccCeeecCC-------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHH
Q 022336 172 YIDWAEL----QRRGFKGVVFDKDNTLTAPY-------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKA 240 (299)
Q Consensus 172 ~Id~~~L----k~~GIRaLVlD~DNTLT~p~-------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a 240 (299)
.++.+.+ ++..-++++||.||||++.. ...+.|++.+.|++|.+.-+..|+|||+.. .+.+
T Consensus 492 ~l~~~~~~~~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~--------~~~L 563 (797)
T PLN03063 492 ELPEQDVIQQYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSG--------KDIL 563 (797)
T ss_pred CCCHHHHHHHHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCC--------HHHH
Confidence 4555443 45667999999999999542 244788999999999876567899999987 5666
Q ss_pred HHHHHHcCC
Q 022336 241 RKLEGKIGI 249 (299)
Q Consensus 241 ~~~lk~LGI 249 (299)
+.+....++
T Consensus 564 ~~~~~~~~l 572 (797)
T PLN03063 564 DKNFGEYNI 572 (797)
T ss_pred HHHhCCCCC
Confidence 666655443
No 187
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=96.00 E-value=0.018 Score=63.03 Aligned_cols=64 Identities=22% Similarity=0.180 Sum_probs=48.4
Q ss_pred HHHcCCcEEEEeccCeeecC----C---------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHH
Q 022336 178 LQRRGFKGVVFDKDNTLTAP----Y---------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLE 244 (299)
Q Consensus 178 Lk~~GIRaLVlD~DNTLT~p----~---------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~l 244 (299)
+++..-++|+||.||||++. . ...+.|++.+.|++|.+.-+..|+|||+.. .+.++.+.
T Consensus 586 y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~--------~~~Le~~f 657 (934)
T PLN03064 586 YLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD--------RSVLDENF 657 (934)
T ss_pred HHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC--------HHHHHHHh
Confidence 34567799999999999952 1 334678889999999876467899999997 66666666
Q ss_pred HHcCC
Q 022336 245 GKIGI 249 (299)
Q Consensus 245 k~LGI 249 (299)
..+++
T Consensus 658 g~~~L 662 (934)
T PLN03064 658 GEFDM 662 (934)
T ss_pred CCCCc
Confidence 65544
No 188
>PRK11590 hypothetical protein; Provisional
Probab=95.89 E-value=0.06 Score=48.04 Aligned_cols=77 Identities=9% Similarity=0.012 Sum_probs=54.7
Q ss_pred ccCchHHHHHH-HHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC---c-EEE-------ccC--CCCH---HHH
Q 022336 201 TLWGPLSSSIE-QCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI---K-VIR-------HRV--KKPA---GTA 263 (299)
Q Consensus 201 ~l~Pgv~e~L~-~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI---~-vI~-------ha~--KKP~---p~l 263 (299)
.+.|++.+.|+ .+++. |++++|+||+. ...++.+++.+|+ . ++. .+. .++- ...
T Consensus 95 ~~~pga~e~L~~~l~~~-G~~l~IvSas~--------~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~ 165 (211)
T PRK11590 95 TAFPVVQERLTTYLLSS-DADVWLITGSP--------QPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKV 165 (211)
T ss_pred cCCccHHHHHHHHHHhC-CCEEEEEeCCc--------HHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHH
Confidence 45899999995 57766 99999999998 6788888888773 2 221 110 1111 125
Q ss_pred HHHHHHhCCCCCcEEEEcCCccc
Q 022336 264 EEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 264 e~alk~lGi~PeEiamVGDrl~D 286 (299)
..+.+.+|.+.+++..-||+..|
T Consensus 166 ~~l~~~~~~~~~~~~aY~Ds~~D 188 (211)
T PRK11590 166 AQLERKIGTPLRLYSGYSDSKQD 188 (211)
T ss_pred HHHHHHhCCCcceEEEecCCccc
Confidence 55656668788888899999999
No 189
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=95.80 E-value=0.031 Score=52.50 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=48.7
Q ss_pred cCchHHHHHHHHHHhCC-CcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE---------------------E---ccC
Q 022336 202 LWGPLSSSIEQCKSVFG-HDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI---------------------R---HRV 256 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fG-ikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI---------------------~---ha~ 256 (299)
+.|+..++++.+++. | +.+.|||-.. .-.++.++++.|+..+ + |++
T Consensus 85 ~~Pgmv~lik~~ak~-g~~eliIVSDaN--------sfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC 155 (256)
T KOG3120|consen 85 IVPGMVRLIKSAAKL-GCFELIIVSDAN--------SFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSC 155 (256)
T ss_pred CCccHHHHHHHHHhC-CCceEEEEecCc--------hhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCcc
Confidence 346666677777776 6 4899999776 4566666666664211 1 121
Q ss_pred --CCCHH--H--HHHHHH---HhCCCCCcEEEEcCCccccccc
Q 022336 257 --KKPAG--T--AEEIEK---HFGCQSSQLIMVDMCRIVIFPG 290 (299)
Q Consensus 257 --KKP~p--~--le~alk---~lGi~PeEiamVGDrl~DI~gA 290 (299)
-++.- + ++++.. +-|+.-++++||||.-+|+.+-
T Consensus 156 ~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~ 198 (256)
T KOG3120|consen 156 NLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPV 198 (256)
T ss_pred CcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcc
Confidence 12221 1 333322 2378889999999999996553
No 190
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=95.72 E-value=0.011 Score=53.45 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=27.0
Q ss_pred EEeccCeeec----CCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 187 VFDKDNTLTA----PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 187 VlD~DNTLT~----p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
+||.||||++ |....+.+++.+.|++|.+..+..|+|+|+..
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~ 46 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRS 46 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCC
Confidence 6999999994 23345778999999999887445799999987
No 191
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=95.47 E-value=0.037 Score=53.39 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=72.6
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhcCCC--CcCCccccCCcCCCCH---HHHHHcCCcEEEEeccCeeecCCCc-c-cCc
Q 022336 132 SQLKAALGQRINVEGIVSSTVVFAKDRH--LALPHVTVPDIRYIDW---AELQRRGFKGVVFDKDNTLTAPYSL-T-LWG 204 (299)
Q Consensus 132 ~~~~~~~~q~~N~~gi~~~~~~~~~~p~--ll~P~~~v~sI~~Id~---~~Lk~~GIRaLVlD~DNTLT~p~~~-~-l~P 204 (299)
+|+|..+-..+-.+....++-. --+|. -++=.|+|.++.++.- +.+.-.--.+||||+|+||...... . ..|
T Consensus 67 ~diR~~lK~~fk~s~lGh~fvl-~~~~~~y~~L~EW~v~~~~ev~~l~~~~~~~~~phVIVfDlD~TLItd~~~v~Ir~~ 145 (297)
T PF05152_consen 67 RDIRKNLKTAFKTSYLGHVFVL-NEKPPMYNFLKEWYVQDYSEVYQLKEESLVWEPPHVIVFDLDSTLITDEGDVRIRDP 145 (297)
T ss_pred HHHHHHHHHHhcccccCcEEEe-cCCccHHHHHHHHhcCChhhhhhhhhhhccCCCCcEEEEECCCcccccCCccccCCh
Confidence 5667766666666666655542 22332 1345666766666553 1222233479999999999844332 3 468
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 205 PLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 205 gv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.+.+.|.+|++. |.-+++=|-+. .+.|..-+++++++
T Consensus 146 ~v~~sL~~Lk~~-g~vLvLWSyG~--------~eHV~~sl~~~~L~ 182 (297)
T PF05152_consen 146 AVYDSLRELKEQ-GCVLVLWSYGN--------REHVRHSLKELKLE 182 (297)
T ss_pred HHHHHHHHHHHc-CCEEEEecCCC--------HHHHHHHHHHhCCc
Confidence 889999999997 88888888775 67888888888764
No 192
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=95.30 E-value=0.15 Score=47.80 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=68.7
Q ss_pred cCCcCCCCHHHHHHc-CCcEEEEeccCeeecCCCccc-------------------------------------------
Q 022336 167 VPDIRYIDWAELQRR-GFKGVVFDKDNTLTAPYSLTL------------------------------------------- 202 (299)
Q Consensus 167 v~sI~~Id~~~Lk~~-GIRaLVlD~DNTLT~p~~~~l------------------------------------------- 202 (299)
+.|+.+| .+.++.. .=-.||||+|+||..+...-.
T Consensus 4 v~s~~eV-~~~~~~~~~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~li 82 (252)
T PF11019_consen 4 VYSFHEV-QDYLENADQDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELI 82 (252)
T ss_pred ecCHHHH-HHHHHcCCCCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEc
Confidence 4566666 5666654 567899999999874331110
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE----------E-------------------
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI----------R------------------- 253 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI----------~------------------- 253 (299)
.+.+.+.++.+++. |++|..+|..+. .......+-++.+||.+- .
T Consensus 83 e~~~~~~i~~lq~~-~~~v~alT~~~~-----~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIl 156 (252)
T PF11019_consen 83 ESDVPNIINSLQNK-GIPVIALTARGP-----NMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGIL 156 (252)
T ss_pred chhHHHHHHHHHHC-CCcEEEEcCCCh-----hhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeE
Confidence 11222233457776 899999998861 112222333344665311 0
Q ss_pred -ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 254 -HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 254 -ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
.+.-.....+..++...|..|+.++||.|+.-.+
T Consensus 157 ft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl 191 (252)
T PF11019_consen 157 FTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENL 191 (252)
T ss_pred EeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHH
Confidence 0112223458889999999999999999987553
No 193
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=95.27 E-value=0.17 Score=46.48 Aligned_cols=131 Identities=17% Similarity=0.241 Sum_probs=89.2
Q ss_pred hHHHHHHHhccCCCHHHHHHHHHHHhcCCCCcCCccccCCcCCCCHHHHH----HcCCcEEEEeccCeeecCCCcccCch
Q 022336 130 WWSQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQ----RRGFKGVVFDKDNTLTAPYSLTLWGP 205 (299)
Q Consensus 130 ~~~~~~~~~~q~~N~~gi~~~~~~~~~~p~ll~P~~~v~sI~~Id~~~Lk----~~GIRaLVlD~DNTLT~p~~~~l~Pg 205 (299)
|-.++.+..|-..-.++..+.+..+. ..|.-+-++..|+ +.|++ +|-|+ ..++|.
T Consensus 49 ~v~~v~~e~g~~~s~E~lva~~~~wi-----------aed~K~t~lK~lQG~iWa~Gy~------sgelk----ahlypD 107 (229)
T COG4229 49 IVDEVLSEFGIANSEEALVALLLEWI-----------AEDSKDTPLKALQGMIWAHGYE------SGELK----AHLYPD 107 (229)
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHH-----------hcccccchHHHHHhHHHHhccc------cCccc----cccCHh
Confidence 45567778887776777766664322 3444455566664 67997 77777 468899
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHH-HHHc---CC----cEEEc--cCCCCHH-HHHHHHHHhCCCC
Q 022336 206 LSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKL-EGKI---GI----KVIRH--RVKKPAG-TAEEIEKHFGCQS 274 (299)
Q Consensus 206 v~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~-lk~L---GI----~vI~h--a~KKP~p-~le~alk~lGi~P 274 (299)
+.++|++.++. |++|.|.|..+ ..++.+ ..+- ++ .-++. ..+|-.. .+.+|++..|++|
T Consensus 108 av~~ik~wk~~-g~~vyiYSSGS---------V~AQkL~Fghs~agdL~~lfsGyfDttiG~KrE~~SY~kIa~~iGl~p 177 (229)
T COG4229 108 AVQAIKRWKAL-GMRVYIYSSGS---------VKAQKLFFGHSDAGDLNSLFSGYFDTTIGKKRESQSYAKIAGDIGLPP 177 (229)
T ss_pred HHHHHHHHHHc-CCcEEEEcCCC---------chhHHHhhcccccccHHhhhcceeeccccccccchhHHHHHHhcCCCc
Confidence 99999999997 99999999875 223322 1110 11 11111 2244443 4999999999999
Q ss_pred CcEEEEcCCcccccccc
Q 022336 275 SQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 275 eEiamVGDrl~DI~gAn 291 (299)
.|++++-|.+.-+.||.
T Consensus 178 ~eilFLSDn~~EL~AA~ 194 (229)
T COG4229 178 AEILFLSDNPEELKAAA 194 (229)
T ss_pred hheEEecCCHHHHHHHH
Confidence 99999999887766664
No 194
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=95.17 E-value=0.031 Score=51.88 Aligned_cols=47 Identities=21% Similarity=0.209 Sum_probs=37.7
Q ss_pred HHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
++.---.++||+||||| +-.....|++.+.|+.+++. ..+++|-.+.
T Consensus 7 ~r~~~~l~lfdvdgtLt-~~r~~~~~e~~~~l~~lr~~--v~ig~VggsD 53 (252)
T KOG3189|consen 7 ARDEETLCLFDVDGTLT-PPRQKVTPEMLEFLQKLRKK--VTIGFVGGSD 53 (252)
T ss_pred hcCCceEEEEecCCccc-cccccCCHHHHHHHHHHhhh--eEEEEeecHH
Confidence 33333478999999999 66678999999999999885 7889886653
No 195
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=94.72 E-value=0.087 Score=58.42 Aligned_cols=83 Identities=12% Similarity=0.152 Sum_probs=59.0
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc-E----------------------------
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK-V---------------------------- 251 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~-v---------------------------- 251 (299)
.+.|++.+++++|+++ |+++.++|+.. ...+..+++.+|+. .
T Consensus 646 p~r~~v~~aI~~l~~a-GIkv~MiTGD~--------~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l 716 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQA-GINVHMLTGDF--------PETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEV 716 (1053)
T ss_pred CCchhHHHHHHHHHHC-CCEEEEECCCC--------HHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHH
Confidence 3568999999999997 99999999986 67889999999872 1
Q ss_pred --------EEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---ccccceee
Q 022336 252 --------IRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPGPVVI 294 (299)
Q Consensus 252 --------I~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gAn~~~ 294 (299)
++ +.-.|.-. .++.+.+.-.-+-++|+||..+| +..|+.=|
T Consensus 717 ~~~~~~~~V~-ar~sP~~K-~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGI 768 (1053)
T TIGR01523 717 DDLKALCLVI-ARCAPQTK-VKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGI 768 (1053)
T ss_pred HHHhhcCeEE-EecCHHHH-HHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccE
Confidence 11 12234321 13344444345679999999999 66666544
No 196
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=94.51 E-value=0.28 Score=44.31 Aligned_cols=77 Identities=10% Similarity=0.056 Sum_probs=53.1
Q ss_pred ccCchHHHHHH-HHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC----cEEE------ccC---CCCH---HHH
Q 022336 201 TLWGPLSSSIE-QCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI----KVIR------HRV---KKPA---GTA 263 (299)
Q Consensus 201 ~l~Pgv~e~L~-~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI----~vI~------ha~---KKP~---p~l 263 (299)
.+.|++.+.|+ .++++ |.+++||||+. ...++.+++.+++ .++. .+. .++- ..+
T Consensus 94 ~l~pga~e~L~~~l~~~-G~~v~IvSas~--------~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv 164 (210)
T TIGR01545 94 TAFPLVAERLRQYLESS-DADIWLITGSP--------QPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKV 164 (210)
T ss_pred CCCccHHHHHHHHHHhC-CCEEEEEcCCc--------HHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHH
Confidence 46899999996 67776 99999999998 6778888876432 2221 110 0111 124
Q ss_pred HHHHHHhCCCCCcEEEEcCCccc
Q 022336 264 EEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 264 e~alk~lGi~PeEiamVGDrl~D 286 (299)
..+.+.+|.+.+.+..-||+..|
T Consensus 165 ~rl~~~~~~~~~~~~aYsDS~~D 187 (210)
T TIGR01545 165 AQLEQKIGSPLKLYSGYSDSKQD 187 (210)
T ss_pred HHHHHHhCCChhheEEecCCccc
Confidence 55556667677788899999999
No 197
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=94.06 E-value=0.1 Score=46.09 Aligned_cols=31 Identities=6% Similarity=-0.017 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 256 VKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 256 ~KKP~p~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
.-|+. +++.+++++|++++++++|||+.+|+
T Consensus 178 ~~Kg~-al~~l~~~lgi~~~~vi~~GD~~NDi 208 (221)
T TIGR02463 178 SSKGK-AANWLKATYNQPDVKTLGLGDGPNDL 208 (221)
T ss_pred CCHHH-HHHHHHHHhCCCCCcEEEECCCHHHH
Confidence 33443 58899999999999999999999994
No 198
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=94.04 E-value=0.072 Score=47.09 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
+++.+++++|++++++++|||+.+|+...+
T Consensus 151 ~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~ 180 (215)
T TIGR01487 151 GVEKLKELLGIKPEEVAAIGDSENDIDLFR 180 (215)
T ss_pred HHHHHHHHhCCCHHHEEEECCCHHHHHHHH
Confidence 588999999999999999999999955443
No 199
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=93.97 E-value=0.1 Score=48.22 Aligned_cols=31 Identities=6% Similarity=-0.095 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCC-CcEEEEcCCcccccccc
Q 022336 261 GTAEEIEKHFGCQS-SQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 261 p~le~alk~lGi~P-eEiamVGDrl~DI~gAn 291 (299)
.+++.+++++|+++ +++++|||+.+|+....
T Consensus 193 ~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~ 224 (273)
T PRK00192 193 KAVRWLKELYRRQDGVETIALGDSPNDLPMLE 224 (273)
T ss_pred HHHHHHHHHHhccCCceEEEEcCChhhHHHHH
Confidence 36889999999999 99999999999965443
No 200
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=93.94 E-value=0.066 Score=47.08 Aligned_cols=30 Identities=7% Similarity=0.079 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
++..+++++|++++++++|||+.+||...+
T Consensus 153 ~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~ 182 (225)
T TIGR01482 153 AVKKLKEKLGIKPGETLVCGDSENDIDLFE 182 (225)
T ss_pred HHHHHHHHhCCCHHHEEEECCCHhhHHHHH
Confidence 588999999999999999999999965444
No 201
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=93.61 E-value=0.09 Score=46.49 Aligned_cols=31 Identities=6% Similarity=0.024 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
+++.+++++|++++++++|||+.+|+.....
T Consensus 161 al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ 191 (230)
T PRK01158 161 GLKKLAELMGIDPEEVAAIGDSENDLEMFEV 191 (230)
T ss_pred HHHHHHHHhCCCHHHEEEECCchhhHHHHHh
Confidence 5889999999999999999999999655443
No 202
>PLN02382 probable sucrose-phosphatase
Probab=93.60 E-value=0.11 Score=51.72 Aligned_cols=56 Identities=13% Similarity=-0.003 Sum_probs=36.0
Q ss_pred cEEEEeccCeeecCC-CcccCc-hHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 184 KGVVFDKDNTLTAPY-SLTLWG-PLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 184 RaLVlD~DNTLT~p~-~~~l~P-gv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
-+|+.|+||||...+ +..+.+ ...+.|+++.+. |+.++++|++. ...+..+.+.++
T Consensus 10 ~lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~~-gi~fv~aTGR~--------~~~~~~l~~~~~ 67 (413)
T PLN02382 10 LMIVSDLDHTMVDHHDPENLSLLRFNALWEAEYRH-DSLLVFSTGRS--------PTLYKELRKEKP 67 (413)
T ss_pred EEEEEcCCCcCcCCCCccchhHHHHHHHHHHhhcC-CeeEEEEcCCC--------HHHHHHHHHhCC
Confidence 478889999999432 224443 334444777776 88888888876 455555555544
No 203
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=93.54 E-value=0.11 Score=52.63 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=51.1
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHc-CC------c------EEEccCC-----------
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI-GI------K------VIRHRVK----------- 257 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~L-GI------~------vI~ha~K----------- 257 (299)
..|.+..+|+++++. |.++.++||+. ..-+..++..+ |- + +|.-..+
T Consensus 184 k~~~l~~~L~~lr~~-GKklFLiTNS~--------~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pf 254 (448)
T PF05761_consen 184 KDPKLPPWLERLRSA-GKKLFLITNSP--------FDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPF 254 (448)
T ss_dssp --CHHHHHHHHHHCC-T-EEEEE-SS---------HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---E
T ss_pred CCchHHHHHHHHHhc-CceEEEecCCC--------CchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCce
Confidence 357889999999997 99999999997 67777776653 32 1 1110001
Q ss_pred -------------------CCHH----H-HHHHHHHhCCCCCcEEEEcCCccc-ccccc
Q 022336 258 -------------------KPAG----T-AEEIEKHFGCQSSQLIMVDMCRIV-IFPGP 291 (299)
Q Consensus 258 -------------------KP~p----~-le~alk~lGi~PeEiamVGDrl~D-I~gAn 291 (299)
++.. | ...+.+.+|..-.+|+||||.++. |...+
T Consensus 255 r~vd~~~g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k 313 (448)
T PF05761_consen 255 REVDTETGKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSK 313 (448)
T ss_dssp EEEETTTSSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHH
T ss_pred EEEECCCCccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhc
Confidence 1111 2 677888889999999999999987 65543
No 204
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=93.47 E-value=0.049 Score=50.27 Aligned_cols=56 Identities=13% Similarity=0.020 Sum_probs=33.4
Q ss_pred cEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 184 KGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
+.|+.|+||||+ +++..-.....++++ .+..-++.++++|+.. .+.+..+.+..++
T Consensus 3 ~ll~sDlD~Tl~-~~~~~~~~~l~~~l~-~~~~~~~~~v~~TGRs--------~~~~~~~~~~~~l 58 (247)
T PF05116_consen 3 RLLASDLDGTLI-DGDDEALARLEELLE-QQARPEILFVYVTGRS--------LESVLRLLREYNL 58 (247)
T ss_dssp EEEEEETBTTTB-HCHHHHHHHHHHHHH-HHHCCGEEEEEE-SS---------HHHHHHHHHHCT-
T ss_pred EEEEEECCCCCc-CCCHHHHHHHHHHHH-HhhCCCceEEEECCCC--------HHHHHHHHHhCCC
Confidence 579999999999 333222333344444 2222256788888876 6677777776654
No 205
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=93.46 E-value=0.52 Score=43.37 Aligned_cols=130 Identities=16% Similarity=0.116 Sum_probs=74.4
Q ss_pred HhcCCCCcCCcccc------CCcCCCCHHHHHH----cCCcEEEEeccCeee--cC----CCcccCchHHHH--------
Q 022336 154 FAKDRHLALPHVTV------PDIRYIDWAELQR----RGFKGVVFDKDNTLT--AP----YSLTLWGPLSSS-------- 209 (299)
Q Consensus 154 ~~~~p~ll~P~~~v------~sI~~Id~~~Lk~----~GIRaLVlD~DNTLT--~p----~~~~l~Pgv~e~-------- 209 (299)
+...|....|-..+ ..|-+|+.+.++. +--=+|-||+|-|+. .| +...+.|+..+.
T Consensus 24 ~g~s~pytq~Gtna~~l~~qa~ihwiSvaqI~~SLeG~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~ 103 (237)
T COG3700 24 LGSSPPYTQPGTNAARLAEQAPIHWISVAQIENSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWE 103 (237)
T ss_pred cCCCCCCCCCCccHHHHhhhCCeeEEEHHHHHhhhcCCCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHH
Confidence 35667777777666 3466677665543 334568899999985 11 122233333322
Q ss_pred ------------------HHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC----cEEEccCCCCHHH-H--H
Q 022336 210 ------------------IEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI----KVIRHRVKKPAGT-A--E 264 (299)
Q Consensus 210 ------------------L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI----~vI~ha~KKP~p~-l--e 264 (299)
|-.+.++-|.+|..+|+..- + +.......+++.+.| ++++.+. ||.++ + -
T Consensus 104 ~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~-g---k~d~vsk~Lak~F~i~~m~pv~f~Gd-k~k~~qy~Kt 178 (237)
T COG3700 104 KVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTP-G---KTDTVSKTLAKNFHITNMNPVIFAGD-KPKPGQYTKT 178 (237)
T ss_pred HHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCC-C---cccccchhHHhhcccCCCcceeeccC-CCCccccccc
Confidence 22233334899999998861 1 112344556667765 4555543 44432 1 1
Q ss_pred HHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 265 EIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 265 ~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
..+.. ..--++-||+-.||.+|+-
T Consensus 179 ~~i~~----~~~~IhYGDSD~Di~AAke 202 (237)
T COG3700 179 QWIQD----KNIRIHYGDSDNDITAAKE 202 (237)
T ss_pred HHHHh----cCceEEecCCchhhhHHHh
Confidence 33343 3335788999999988763
No 206
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=93.30 E-value=0.28 Score=54.05 Aligned_cols=40 Identities=15% Similarity=0.411 Sum_probs=34.1
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
.+-|++.+.+++|+++ |+++.++|+.. ...+..+++.+|+
T Consensus 568 plr~~v~~aI~~l~~~-Gi~v~~~TGd~--------~~ta~~ia~~~gi 607 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSA-GIKVIMVTGDH--------PITAKAIAKGVGI 607 (997)
T ss_pred CChHHHHHHHHHHHHC-CCeEEEECCCC--------HHHHHHHHHHcCC
Confidence 3568999999999997 99999999987 6677778887776
No 207
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=93.29 E-value=0.27 Score=52.18 Aligned_cols=107 Identities=20% Similarity=0.133 Sum_probs=70.2
Q ss_pred HcCCcEEEEeccCeeecCCCc----------ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHH---
Q 022336 180 RRGFKGVVFDKDNTLTAPYSL----------TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGK--- 246 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~~~----------~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~--- 246 (299)
+..-|.||-|+|||||.-+.+ --+-|+.+.+.+.++. |++++-+|..+ +++.|..+...+.+.+.
T Consensus 527 kWn~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~N-GYk~lyLSARa-IgQA~~TR~yL~nv~QdG~~ 604 (738)
T KOG2116|consen 527 KWNDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKEN-GYKILYLSARA-IGQADSTRQYLKNVEQDGKK 604 (738)
T ss_pred ecCCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhC-CeeEEEEehhh-hhhhHHHHHHHHHHhhcCcc
Confidence 446699999999999943221 1246888999999997 99999999997 55545444444544443
Q ss_pred c-CCcEEEc------------cCCCCHH----HHHHHHHHhCCCCCc--EEEEcCCcccccc
Q 022336 247 I-GIKVIRH------------RVKKPAG----TAEEIEKHFGCQSSQ--LIMVDMCRIVIFP 289 (299)
Q Consensus 247 L-GI~vI~h------------a~KKP~p----~le~alk~lGi~PeE--iamVGDrl~DI~g 289 (299)
| .-+++.. -.+||+. ++..|.+.|. +-.+ -+=+|.|+.|++.
T Consensus 605 LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~DIk~LF~-p~~nPFYAgFGNR~TDviS 665 (738)
T KOG2116|consen 605 LPDGPVILSPDSLFAALHREVIERKPEVFKIACLTDIKNLFP-PSGNPFYAGFGNRITDVIS 665 (738)
T ss_pred CCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHHHHHhcC-CCCCceeeecCCCccccee
Confidence 2 1134321 1478874 3667777776 2233 5567899988654
No 208
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=93.08 E-value=0.59 Score=40.63 Aligned_cols=93 Identities=11% Similarity=0.029 Sum_probs=62.5
Q ss_pred cEEEEeccCeeecCC--------CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE--
Q 022336 184 KGVVFDKDNTLTAPY--------SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR-- 253 (299)
Q Consensus 184 RaLVlD~DNTLT~p~--------~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~-- 253 (299)
+.|.+|+|+++.+-+ ...+++.+..-|..|++. |+.++++|++. ..+.|..+++.+.++.-.
T Consensus 19 ~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~-GVtl~~ASRt~-------ap~iA~q~L~~fkvk~~Gvl 90 (144)
T KOG4549|consen 19 RLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKL-GVTLIHASRTM-------APQIASQGLETFKVKQTGVL 90 (144)
T ss_pred EEEEecccccccccccCcccCcceeeeccchhHHHHHHHhc-CcEEEEecCCC-------CHHHHHHHHHHhccCccccc
Confidence 456666666665311 223688899999999997 99999999998 367888888888764221
Q ss_pred -----------ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCc
Q 022336 254 -----------HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCR 284 (299)
Q Consensus 254 -----------ha~KKP~p~le~alk~lGi~PeEiamVGDrl 284 (299)
.+..-..+.+.++-...|+.-.+..+..|-.
T Consensus 91 kps~e~ft~~~~g~gsklghfke~~n~s~~~~k~~~~fdDes 132 (144)
T KOG4549|consen 91 KPSLEEFTFEAVGDGSKLGHFKEFTNNSNSIEKNKQVFDDES 132 (144)
T ss_pred chhhhcCceeeecCcccchhHHHHhhccCcchhceeeecccc
Confidence 1111111346666666677778888877754
No 209
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=92.64 E-value=0.69 Score=48.38 Aligned_cols=99 Identities=9% Similarity=0.098 Sum_probs=74.8
Q ss_pred HHHHcCCcEEEEeccCeeec--CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 177 ELQRRGFKGVVFDKDNTLTA--PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~--p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
...+.|=..++.=.||-+.. .-...+.||+.|.+.+|++. |++.+.+|+.. .-.+..++++-|++.+.-
T Consensus 421 ~vs~~GGTPL~V~~~~~~~GVI~LkDivK~Gi~ERf~elR~M-gIkTvM~TGDN--------~~TAa~IA~EAGVDdfiA 491 (681)
T COG2216 421 EVSRLGGTPLVVVENGRILGVIYLKDIVKPGIKERFAELRKM-GIKTVMITGDN--------PLTAAAIAAEAGVDDFIA 491 (681)
T ss_pred HHHhcCCCceEEEECCEEEEEEEehhhcchhHHHHHHHHHhc-CCeEEEEeCCC--------HHHHHHHHHHhCchhhhh
Confidence 33456777777777888761 12445789999999999997 99999999876 667889999999975543
Q ss_pred cCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 255 RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 255 a~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
..||...++ ++++-..+-.=++|.||.-+|
T Consensus 492 -eatPEdK~~-~I~~eQ~~grlVAMtGDGTND 521 (681)
T COG2216 492 -EATPEDKLA-LIRQEQAEGRLVAMTGDGTND 521 (681)
T ss_pred -cCChHHHHH-HHHHHHhcCcEEEEcCCCCCc
Confidence 347765554 445556667779999999998
No 210
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=92.19 E-value=0.15 Score=44.32 Aligned_cols=12 Identities=42% Similarity=0.443 Sum_probs=11.3
Q ss_pred cEEEEeccCeee
Q 022336 184 KGVVFDKDNTLT 195 (299)
Q Consensus 184 RaLVlD~DNTLT 195 (299)
|+|+||+||||+
T Consensus 1 k~viFDlDGTL~ 12 (203)
T TIGR02252 1 KLITFDAVGTLL 12 (203)
T ss_pred CeEEEecCCcee
Confidence 689999999999
No 211
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=91.65 E-value=0.56 Score=51.44 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=57.4
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc-------EEEc-----------------
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK-------VIRH----------------- 254 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~-------vI~h----------------- 254 (299)
...+-+++.++++.|+++ |+++.++|+-. ..-|..+++++|+. ++-.
T Consensus 545 ~Dppr~~v~~aI~~l~~A-GI~v~MiTGD~--------~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~ 615 (917)
T COG0474 545 EDPPREDVKEAIEELREA-GIKVWMITGDH--------VETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEE 615 (917)
T ss_pred cCCCCccHHHHHHHHHHC-CCcEEEECCCC--------HHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhh
Confidence 345678999999999997 99999999976 67888899998862 1111
Q ss_pred ----cCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc---ccccceee
Q 022336 255 ----RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV---IFPGPVVI 294 (299)
Q Consensus 255 ----a~KKP~p~le~alk~lGi~PeEiamVGDrl~D---I~gAn~~~ 294 (299)
++--|.-. .++.+.+.-.-.-++|+||..+| +..|+.=|
T Consensus 616 ~~VfARvsP~qK-~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGI 661 (917)
T COG0474 616 LSVFARVSPEQK-ARIVEALQKSGHVVAMTGDGVNDAPALKAADVGI 661 (917)
T ss_pred CcEEEEcCHHHH-HHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccE
Confidence 01122211 12223333334679999999999 66666433
No 212
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=91.51 E-value=0.2 Score=43.74 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=12.4
Q ss_pred CcEEEEeccCeee
Q 022336 183 FKGVVFDKDNTLT 195 (299)
Q Consensus 183 IRaLVlD~DNTLT 195 (299)
||+|+||+||||.
T Consensus 1 ~k~viFD~DGTL~ 13 (224)
T TIGR02254 1 YKTLLFDLDDTIL 13 (224)
T ss_pred CCEEEEcCcCccc
Confidence 6899999999999
No 213
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=91.45 E-value=0.098 Score=44.90 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=15.2
Q ss_pred CcEEEEeccCeeecCCCccc
Q 022336 183 FKGVVFDKDNTLTAPYSLTL 202 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l 202 (299)
|++|+||+||||| .+...+
T Consensus 1 i~~i~fDktGTLt-~~~~~v 19 (215)
T PF00702_consen 1 IDAICFDKTGTLT-QGKMSV 19 (215)
T ss_dssp ESEEEEECCTTTB-ESHHEE
T ss_pred CeEEEEecCCCcc-cCeEEE
Confidence 5899999999999 554445
No 214
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=90.96 E-value=0.74 Score=51.12 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=34.2
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
.+.|++.+++++|+++ |+++.++|+-. ...|..+++++|+
T Consensus 656 ~lr~~~~~~I~~l~~a-gi~v~miTGD~--------~~TA~~iA~~~gi 695 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRA-SIRTVMITGDN--------PLTAVHVARECGI 695 (1054)
T ss_pred CCCccHHHHHHHHHHC-CCeEEEECCCC--------HHHHHHHHHHcCC
Confidence 4678999999999997 99999999976 5677777787776
No 215
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=90.28 E-value=0.32 Score=44.05 Aligned_cols=13 Identities=31% Similarity=0.481 Sum_probs=12.5
Q ss_pred CcEEEEeccCeee
Q 022336 183 FKGVVFDKDNTLT 195 (299)
Q Consensus 183 IRaLVlD~DNTLT 195 (299)
+|+|+||+||||.
T Consensus 2 ~k~viFD~DGTLi 14 (253)
T TIGR01422 2 IEAVIFDWAGTTV 14 (253)
T ss_pred ceEEEEeCCCCee
Confidence 7899999999999
No 216
>PRK09449 dUMP phosphatase; Provisional
Probab=90.17 E-value=0.27 Score=43.36 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=13.2
Q ss_pred CCcEEEEeccCeee
Q 022336 182 GFKGVVFDKDNTLT 195 (299)
Q Consensus 182 GIRaLVlD~DNTLT 195 (299)
.||+|+||+||||+
T Consensus 2 ~~k~iiFDlDGTLi 15 (224)
T PRK09449 2 KYDWILFDADETLF 15 (224)
T ss_pred CccEEEEcCCCchh
Confidence 48999999999999
No 217
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=90.15 E-value=0.16 Score=45.64 Aligned_cols=29 Identities=7% Similarity=-0.086 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCccccccc
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCRIVIFPG 290 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl~DI~gA 290 (299)
+++.+++++|++++++++|||+.+|+...
T Consensus 163 al~~l~~~~g~~~~~~i~~GD~~nD~~ml 191 (236)
T TIGR02471 163 ALRYLSYRWGLPLEQILVAGDSGNDEEML 191 (236)
T ss_pred HHHHHHHHhCCCHHHEEEEcCCccHHHHH
Confidence 47899999999999999999999995443
No 218
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=89.94 E-value=1.1 Score=40.73 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=28.8
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccc
Q 022336 251 VIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFP 289 (299)
Q Consensus 251 vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~g 289 (299)
+...+..|. .+++.+++++|++++++++|||+.+|+..
T Consensus 161 i~~~~~~K~-~al~~l~~~~~i~~~~~i~~GD~~ND~~m 198 (249)
T TIGR01485 161 ILPQGSGKG-QALQYLLQKLAMEPSQTLVCGDSGNDIEL 198 (249)
T ss_pred EEeCCCChH-HHHHHHHHHcCCCccCEEEEECChhHHHH
Confidence 333343333 35889999999999999999999999443
No 219
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=89.52 E-value=0.37 Score=44.28 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=13.0
Q ss_pred CCcEEEEeccCeee
Q 022336 182 GFKGVVFDKDNTLT 195 (299)
Q Consensus 182 GIRaLVlD~DNTLT 195 (299)
.+|+|+||+||||+
T Consensus 3 ~~k~vIFDlDGTLi 16 (267)
T PRK13478 3 KIQAVIFDWAGTTV 16 (267)
T ss_pred ceEEEEEcCCCCee
Confidence 37999999999999
No 220
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=89.16 E-value=0.33 Score=42.09 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=79.7
Q ss_pred ccccccccchhhhhhhhHHHHHHHhccCCCHHHHHHHHHHHhcCCCCc-CCccccCCcCCCCHH-------HHHHcCCcE
Q 022336 114 PRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLA-LPHVTVPDIRYIDWA-------ELQRRGFKG 185 (299)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~N~~gi~~~~~~~~~~p~ll-~P~~~v~sI~~Id~~-------~Lk~~GIRa 185 (299)
.+..+..--.+++|.=++.+++.-+. .+++. .-.+..|-.++ .++-.+-....|+.+ .+++.++..
T Consensus 25 ~~l~~~g~~~~i~TGR~~~~~~~~~~-~~~~~-----~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~~~~~~~ 98 (254)
T PF08282_consen 25 KELQEKGIKLVIATGRSYSSIKRLLK-ELGID-----DYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLKEHNISF 98 (254)
T ss_dssp HHHHHTTCEEEEECSSTHHHHHHHHH-HTTHC-----SEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHHHTTCEE
T ss_pred HhhcccceEEEEEccCcccccccccc-cccch-----hhhcccccceeeecccccchhhheeccchhheeehhhhccccc
Confidence 34444556667777777776655544 33333 11123344444 333333223345543 345678999
Q ss_pred EEEeccCeeecCCCcccCchHHH-------------HHHHHHHhCC-CcEEEEeCCCCCCCCCccHHHHHHHHHHcCC--
Q 022336 186 VVFDKDNTLTAPYSLTLWGPLSS-------------SIEQCKSVFG-HDIAVFSNSAGLYEYDNDASKARKLEGKIGI-- 249 (299)
Q Consensus 186 LVlD~DNTLT~p~~~~l~Pgv~e-------------~L~~Lke~fG-ikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI-- 249 (299)
.+.+.|+..+... ....... ........ . .++. +..... ......+.+.+.++-
T Consensus 99 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~ki~-~~~~~~-----~~~~l~~~l~~~~~~~~ 168 (254)
T PF08282_consen 99 FFYTDDDIYIYEN---KDEEELFFEHKFFNFKESIVSEDDLEDE-EIFKIL-FFPDPE-----DLEQLREELKKKFPNLI 168 (254)
T ss_dssp EEEESSEEEESST---TCHHHHHHHHHHTSCEEEESHHHHHHCS-SESEEE-EESCHH-----HHHHHHHHHHHHHTTTE
T ss_pred ccccceeeecccc---cccchhhhhhcccccccccccccccccc-cceeee-ccccch-----hhhhhhhhhccccCcce
Confidence 9999888888433 0001111 01111221 2 2455 332210 001122334444432
Q ss_pred cEEE----------ccCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 250 KVIR----------HRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 250 ~vI~----------ha~KKP~p~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
.++. .+.-| ..+++.+++.+|++++++++|||+.+|+
T Consensus 169 ~~~~~~~~~lei~~~~vsK-~~ai~~l~~~~~i~~~~~~~~GD~~ND~ 215 (254)
T PF08282_consen 169 DVVRSSPYFLEITPKGVSK-GSAIKYLLEYLGISPEDIIAFGDSENDI 215 (254)
T ss_dssp EEEEEETTEEEEEETTSSH-HHHHHHHHHHHTTSGGGEEEEESSGGGH
T ss_pred eEEEecccceEEeeCCCCH-HHHHHHHhhhcccccceeEEeecccccH
Confidence 1111 12212 2358999999999999999999999995
No 221
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=88.86 E-value=0.17 Score=44.11 Aligned_cols=30 Identities=3% Similarity=-0.115 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
+++.+++++|++++++++|||+.+|+....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~ 196 (204)
T TIGR01484 167 ALQALLKELNGKRDEILAFGDSGNDEEMFE 196 (204)
T ss_pred HHHHHHHHhCCCHHHEEEEcCCHHHHHHHH
Confidence 488999999999999999999999965543
No 222
>PRK10976 putative hydrolase; Provisional
Probab=88.83 E-value=0.25 Score=44.88 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 261 GTAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 261 p~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
.+++.+++++|+++++++.|||+.+||
T Consensus 193 ~al~~l~~~lgi~~~~viafGD~~NDi 219 (266)
T PRK10976 193 HALEAVAKKLGYSLKDCIAFGDGMNDA 219 (266)
T ss_pred HHHHHHHHHcCCCHHHeEEEcCCcccH
Confidence 358999999999999999999999994
No 223
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=88.47 E-value=0.29 Score=44.51 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 261 GTAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 261 p~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
.+++.+++++|+++++++.|||+.+|+
T Consensus 199 ~al~~l~~~~gi~~~~v~afGD~~NDi 225 (270)
T PRK10513 199 TGVKSLAEHLGIKPEEVMAIGDQENDI 225 (270)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhH
Confidence 358999999999999999999999993
No 224
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=88.46 E-value=0.77 Score=46.14 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=38.6
Q ss_pred CCcEEEEeccCeeecCCCc-ccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 182 GFKGVVFDKDNTLTAPYSL-TLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~-~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
+.+.|-||=|.||..++.. .....+...|-+|.+. |++|+|||.-.
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~-gv~VgIVTAAG 192 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRR-GVKVGIVTAAG 192 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhc-CCeEEEEeCCC
Confidence 8999999999999977754 3567888878788886 99999999874
No 225
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=88.14 E-value=0.6 Score=43.97 Aligned_cols=15 Identities=27% Similarity=0.324 Sum_probs=13.7
Q ss_pred cCCcEEEEeccCeee
Q 022336 181 RGFKGVVFDKDNTLT 195 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT 195 (299)
+.+++||||+||||.
T Consensus 38 ~~~k~VIFDlDGTLv 52 (286)
T PLN02779 38 ALPEALLFDCDGVLV 52 (286)
T ss_pred cCCcEEEEeCceeEE
Confidence 458999999999999
No 226
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=87.99 E-value=1.6 Score=38.33 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=26.2
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCC-ccHHHHHHHHHHcC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYD-NDASKARKLEGKIG 248 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d-~~~e~a~~~lk~LG 248 (299)
+.||+.+.|++|.+. |..+.+||..+-. .++ .-.+..+-+.++||
T Consensus 74 p~~gA~e~l~~L~~~-g~~~~~Itar~~~-~~~~~~~~k~~Wl~~hf~ 119 (191)
T PF06941_consen 74 PIPGAVEALKKLRDK-GHEIVIITARPPE-FPDHSAEEKREWLERHFP 119 (191)
T ss_dssp B-TTHHHHHHHHHTS-TTEEEEEEE-SSS-SGCCCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHc-CCcEEEEEecCcc-ccchHHHHHHHHHHHHcC
Confidence 557888888888886 8777777766511 011 11344555666665
No 227
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=87.32 E-value=0.25 Score=44.75 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCcccccccc
Q 022336 261 GTAEEIEKHFGCQSSQLIMVDMCRIVIFPGP 291 (299)
Q Consensus 261 p~le~alk~lGi~PeEiamVGDrl~DI~gAn 291 (299)
.+++.+++++|++++++++|||+.+|+...+
T Consensus 191 ~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~ 221 (256)
T TIGR00099 191 SALQSLAEALGISLEDVIAFGDGMNDIEMLE 221 (256)
T ss_pred HHHHHHHHHcCCCHHHEEEeCCcHHhHHHHH
Confidence 3689999999999999999999999955443
No 228
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=86.98 E-value=0.36 Score=44.20 Aligned_cols=27 Identities=7% Similarity=0.050 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 261 GTAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 261 p~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
.+++.+++++|+++++++.|||..+||
T Consensus 191 ~al~~l~~~~gi~~~~v~afGD~~NDi 217 (272)
T PRK15126 191 AALAVLSQHLGLSLADCMAFGDAMNDR 217 (272)
T ss_pred HHHHHHHHHhCCCHHHeEEecCCHHHH
Confidence 358999999999999999999999993
No 229
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=86.50 E-value=1.1 Score=40.68 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
++..+++++|+++++++.+||+.+|+
T Consensus 193 al~~l~~~lgi~~~~v~afGD~~ND~ 218 (264)
T COG0561 193 ALQRLAKLLGIKLEEVIAFGDSTNDI 218 (264)
T ss_pred HHHHHHHHhCCCHHHeEEeCCccccH
Confidence 58899999999999999999999993
No 230
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=86.45 E-value=0.67 Score=40.37 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=10.5
Q ss_pred EEEEeccCeee
Q 022336 185 GVVFDKDNTLT 195 (299)
Q Consensus 185 aLVlD~DNTLT 195 (299)
+|+||+||||.
T Consensus 2 ~viFD~DGTLi 12 (197)
T TIGR01548 2 ALVLDMDGVMA 12 (197)
T ss_pred ceEEecCceEE
Confidence 68999999999
No 231
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=86.36 E-value=0.64 Score=39.89 Aligned_cols=11 Identities=55% Similarity=0.513 Sum_probs=10.5
Q ss_pred EEEEeccCeee
Q 022336 185 GVVFDKDNTLT 195 (299)
Q Consensus 185 aLVlD~DNTLT 195 (299)
+|+||+||||+
T Consensus 2 ~viFDlDGTL~ 12 (184)
T TIGR01993 2 VWFFDLDNTLY 12 (184)
T ss_pred eEEEeCCCCCC
Confidence 79999999999
No 232
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=85.97 E-value=0.6 Score=39.51 Aligned_cols=11 Identities=45% Similarity=0.818 Sum_probs=10.3
Q ss_pred EEEEeccCeee
Q 022336 185 GVVFDKDNTLT 195 (299)
Q Consensus 185 aLVlD~DNTLT 195 (299)
+|+||+||||+
T Consensus 1 ~iiFD~DGTL~ 11 (185)
T TIGR01990 1 AVIFDLDGVIT 11 (185)
T ss_pred CeEEcCCCccc
Confidence 58999999999
No 233
>PRK11590 hypothetical protein; Provisional
Probab=85.96 E-value=0.67 Score=41.28 Aligned_cols=13 Identities=46% Similarity=0.529 Sum_probs=11.9
Q ss_pred CcEEEEeccCeee
Q 022336 183 FKGVVFDKDNTLT 195 (299)
Q Consensus 183 IRaLVlD~DNTLT 195 (299)
-|+++||+||||+
T Consensus 6 ~k~~iFD~DGTL~ 18 (211)
T PRK11590 6 RRVVFFDLDGTLH 18 (211)
T ss_pred ceEEEEecCCCCc
Confidence 4689999999999
No 234
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=85.86 E-value=2.2 Score=39.35 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=25.7
Q ss_pred cEEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 250 KVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 250 ~vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
.++..+..|- ..+..+++++++++++++++||+.+|
T Consensus 158 dilP~~a~K~-~Al~~L~~~~~~~~~~vl~aGDSgND 193 (247)
T PF05116_consen 158 DILPKGASKG-AALRYLMERWGIPPEQVLVAGDSGND 193 (247)
T ss_dssp EEEETT-SHH-HHHHHHHHHHT--GGGEEEEESSGGG
T ss_pred EEccCCCCHH-HHHHHHHHHhCCCHHHEEEEeCCCCc
Confidence 4444443332 35888999999999999999999999
No 235
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=84.79 E-value=4.5 Score=40.19 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=36.9
Q ss_pred HcCCcEEEEeccCeeec-----------------CCCcccCchHHHHHHHHHHhCC-CcEEEEeCCC
Q 022336 180 RRGFKGVVFDKDNTLTA-----------------PYSLTLWGPLSSSIEQCKSVFG-HDIAVFSNSA 228 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~-----------------p~~~~l~Pgv~e~L~~Lke~fG-ikVaIVSNna 228 (299)
.+|| +||-|+|-|+-- +....+.||+..|++.|.+. | ..|.-|||++
T Consensus 159 ~a~i-giISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~-~~apvfYvSnSP 223 (373)
T COG4850 159 RAGI-GIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNL-GDAPVFYVSNSP 223 (373)
T ss_pred ccce-eeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhc-CCCCeEEecCCh
Confidence 3455 489999999741 22445779999999999887 6 7999999998
No 236
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=84.67 E-value=3.1 Score=45.72 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=54.1
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc---------------------------
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH--------------------------- 254 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h--------------------------- 254 (299)
+-+++.++++.|+++ |++|.++|+-. .+.|..+.+++|+.....
T Consensus 585 PR~ev~~ai~~c~~a-GIrV~mITGD~--------~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~ 655 (972)
T KOG0202|consen 585 PRPEVADAIELCRQA-GIRVIMITGDN--------KETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRV 655 (972)
T ss_pred CchhHHHHHHHHHHc-CCEEEEEcCCC--------HHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcc
Confidence 457999999999997 99999999987 778999999998631110
Q ss_pred ---cCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 255 ---RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 255 ---a~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
++--|.- -.++.+.+.-.-+=++|-||..+|
T Consensus 656 ~vFaR~~P~H-K~kIVeaLq~~geivAMTGDGVND 689 (972)
T KOG0202|consen 656 LVFARAEPQH-KLKIVEALQSRGEVVAMTGDGVND 689 (972)
T ss_pred eEEEecCchh-HHHHHHHHHhcCCEEEecCCCccc
Confidence 1112221 124455555556779999999999
No 237
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=82.49 E-value=0.83 Score=37.76 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=10.2
Q ss_pred EEEEeccCeee
Q 022336 185 GVVFDKDNTLT 195 (299)
Q Consensus 185 aLVlD~DNTLT 195 (299)
+|+||+||||+
T Consensus 1 ~iifD~DGTL~ 11 (154)
T TIGR01549 1 AILFDIDGTLV 11 (154)
T ss_pred CeEecCCCccc
Confidence 48999999999
No 238
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=82.40 E-value=0.73 Score=40.30 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.8
Q ss_pred CcEEEEeccCeeec
Q 022336 183 FKGVVFDKDNTLTA 196 (299)
Q Consensus 183 IRaLVlD~DNTLT~ 196 (299)
+|+|+||+||||+.
T Consensus 2 ik~viFDldGtL~d 15 (211)
T TIGR02247 2 IKAVIFDFGGVLLP 15 (211)
T ss_pred ceEEEEecCCceec
Confidence 68999999999993
No 239
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=81.62 E-value=5.5 Score=44.32 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=24.3
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
..+-+++.+.++.|+++ |+++.++|+-.
T Consensus 630 D~lq~~v~etI~~L~~A-GIkv~mlTGD~ 657 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQA-GIKIWVLTGDK 657 (1057)
T ss_pred hhhhhccHHHHHHHHHC-CCeEEEEcCCc
Confidence 34678999999999997 99999999864
No 240
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=80.41 E-value=1.1 Score=41.32 Aligned_cols=26 Identities=4% Similarity=-0.146 Sum_probs=24.3
Q ss_pred HHHHHHHHhCC---CCCcEEEEcCCcccc
Q 022336 262 TAEEIEKHFGC---QSSQLIMVDMCRIVI 287 (299)
Q Consensus 262 ~le~alk~lGi---~PeEiamVGDrl~DI 287 (299)
+++.+++++|+ ++++++.|||+.+|+
T Consensus 191 al~~l~~~lgi~~~~~~~viafGDs~NDi 219 (271)
T PRK03669 191 AANWLIATYQQLSGTRPTTLGLGDGPNDA 219 (271)
T ss_pred HHHHHHHHHHhhcCCCceEEEEcCCHHHH
Confidence 58999999999 999999999999993
No 241
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=80.22 E-value=0.59 Score=39.50 Aligned_cols=11 Identities=45% Similarity=0.594 Sum_probs=10.3
Q ss_pred EEEEeccCeee
Q 022336 185 GVVFDKDNTLT 195 (299)
Q Consensus 185 aLVlD~DNTLT 195 (299)
+|+||+||||.
T Consensus 1 ~viFD~DGTL~ 11 (175)
T TIGR01493 1 AMVFDVYGTLV 11 (175)
T ss_pred CeEEecCCcCc
Confidence 58999999999
No 242
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=79.52 E-value=0.92 Score=45.35 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=12.9
Q ss_pred CCcEEEEeccCeee
Q 022336 182 GFKGVVFDKDNTLT 195 (299)
Q Consensus 182 GIRaLVlD~DNTLT 195 (299)
-+++|+||+||||+
T Consensus 240 m~k~vIFDlDGTLi 253 (459)
T PRK06698 240 MLQALIFDMDGTLF 253 (459)
T ss_pred hhhheeEccCCcee
Confidence 47999999999999
No 243
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=79.30 E-value=1.3 Score=38.38 Aligned_cols=10 Identities=60% Similarity=0.880 Sum_probs=9.4
Q ss_pred EEEeccCeee
Q 022336 186 VVFDKDNTLT 195 (299)
Q Consensus 186 LVlD~DNTLT 195 (299)
||||+||||+
T Consensus 1 viFD~DGTL~ 10 (213)
T TIGR01449 1 VLFDLDGTLV 10 (213)
T ss_pred CeecCCCccc
Confidence 6999999999
No 244
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=79.16 E-value=1.4 Score=40.10 Aligned_cols=27 Identities=4% Similarity=0.074 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCC--CCcEEEEcCCccccc
Q 022336 262 TAEEIEKHFGCQ--SSQLIMVDMCRIVIF 288 (299)
Q Consensus 262 ~le~alk~lGi~--PeEiamVGDrl~DI~ 288 (299)
+++.+++++|++ .+++++|||+.+|+.
T Consensus 180 ai~~l~~~~~i~~~~~~~~a~GD~~ND~~ 208 (256)
T TIGR01486 180 AANALKQFYNQPGGAIKVVGLGDSPNDLP 208 (256)
T ss_pred HHHHHHHHHhhcCCCceEEEEcCCHhhHH
Confidence 588999999999 999999999999943
No 245
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=77.37 E-value=1.7 Score=37.97 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=13.9
Q ss_pred cCCcEEEEeccCeeec
Q 022336 181 RGFKGVVFDKDNTLTA 196 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~ 196 (299)
..+|+|+||+||||..
T Consensus 2 ~~~k~i~FD~d~TL~d 17 (229)
T COG1011 2 MMIKAILFDLDGTLLD 17 (229)
T ss_pred CceeEEEEecCCcccc
Confidence 3589999999999993
No 246
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=76.74 E-value=0.75 Score=43.84 Aligned_cols=105 Identities=22% Similarity=0.186 Sum_probs=64.6
Q ss_pred cCCCCHHHHHHcCCcEEEEeccCeeecCCC--cc-----------------------cCchHHHHHHHHHHhCCCcEEEE
Q 022336 170 IRYIDWAELQRRGFKGVVFDKDNTLTAPYS--LT-----------------------LWGPLSSSIEQCKSVFGHDIAVF 224 (299)
Q Consensus 170 I~~Id~~~Lk~~GIRaLVlD~DNTLT~p~~--~~-----------------------l~Pgv~e~L~~Lke~fGikVaIV 224 (299)
...+....+...|-|.||+|+|+||. .-. .. -.|++.+.|...-+- +.++|.
T Consensus 76 ~~~~~~~~~~~~~kk~lVLDLDeTLv-Hss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~--~e~v~F 152 (262)
T KOG1605|consen 76 LSPVLPLRLATVGRKTLVLDLDETLV-HSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW--YELVLF 152 (262)
T ss_pred ccccCCcccccCCCceEEEeCCCccc-ccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH--HHHHHH
Confidence 34444455667899999999999987 222 00 136777777776653 577777
Q ss_pred eCCCCCCCCCccHHHHHHHHHHcCC--cEEEc-----cC-CCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 225 SNSAGLYEYDNDASKARKLEGKIGI--KVIRH-----RV-KKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 225 SNnaGs~~~d~~~e~a~~~lk~LGI--~vI~h-----a~-KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
|.+. .+.+..++..|.- .++.| ++ -+++ .+-+-+...|-+.+++++|.|...-
T Consensus 153 TAs~--------~~Ya~~v~D~LD~~~~i~~~RlyR~~C~~~~g-~yvKdls~~~~dL~~viIiDNsP~s 213 (262)
T KOG1605|consen 153 TASL--------EVYADPLLDILDPDRKIISHRLYRDSCTLKDG-NYVKDLSVLGRDLSKVIIVDNSPQS 213 (262)
T ss_pred Hhhh--------HHHHHHHHHHccCCCCeeeeeecccceEeECC-cEEEEcceeccCcccEEEEcCChHH
Confidence 7765 5677777777752 23322 21 1221 1222224556688999999987653
No 247
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=76.56 E-value=3.5 Score=42.49 Aligned_cols=108 Identities=19% Similarity=0.096 Sum_probs=63.8
Q ss_pred HcCCcEEEEeccCeeecCCCc----------ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHH-cC
Q 022336 180 RRGFKGVVFDKDNTLTAPYSL----------TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGK-IG 248 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~~~----------~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~-LG 248 (299)
+...+.||+|+|||||.-+.. .-+-+++....+.-+. |++|.-+|.++ .++.+-.....+.+++. ..
T Consensus 372 r~n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rN-GYkI~YltsR~-~Gqa~sTrsylrnieQngyk 449 (580)
T COG5083 372 RNNKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRN-GYKIKYLTSRS-YGQADSTRSYLRNIEQNGYK 449 (580)
T ss_pred eCCCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccC-ceEEEEEeccc-ccchhhhhhHHHhhhhcCcc
Confidence 457799999999999943322 1245777777777765 99988887774 44444444445555543 11
Q ss_pred C---cEEEc------------cCCCCHH---HHHHHHHHhCCCCCc-EEEEcCCcccccc
Q 022336 249 I---KVIRH------------RVKKPAG---TAEEIEKHFGCQSSQ-LIMVDMCRIVIFP 289 (299)
Q Consensus 249 I---~vI~h------------a~KKP~p---~le~alk~lGi~PeE-iamVGDrl~DI~g 289 (299)
+ +++-. -.+||.. ++..-++.+++.+.- .+=.|.++.|+++
T Consensus 450 LpdgpviLspd~t~aal~relIlrkpE~FKiayLndl~slf~e~~PFyAGFGNriTDvis 509 (580)
T COG5083 450 LPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDLKSLFIEFDPFYAGFGNRITDVIS 509 (580)
T ss_pred CCCCCEeeccchhhhhhhhhhhhcChHHHHHHHHHHHHHhhCcCChhhccccccchhhee
Confidence 2 23311 1367763 344444555554442 3357888888654
No 248
>PLN02887 hydrolase family protein
Probab=74.82 E-value=1.8 Score=45.42 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 261 GTAEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 261 p~le~alk~lGi~PeEiamVGDrl~DI 287 (299)
.+++.+++++|+++++++.|||..+||
T Consensus 510 ~ALk~L~e~lGI~~eeviAFGDs~NDI 536 (580)
T PLN02887 510 NGVKMLLNHLGVSPDEIMAIGDGENDI 536 (580)
T ss_pred HHHHHHHHHcCCCHHHEEEEecchhhH
Confidence 358999999999999999999999993
No 249
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.62 E-value=26 Score=31.68 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=15.5
Q ss_pred HHHHHHHhCCC-CCcEEEEc-CC
Q 022336 263 AEEIEKHFGCQ-SSQLIMVD-MC 283 (299)
Q Consensus 263 le~alk~lGi~-PeEiamVG-Dr 283 (299)
+.+++++.|+. |+++.+|| |+
T Consensus 193 vl~al~~~gl~vP~dvsvig~~d 215 (269)
T cd06287 193 AVRAATELGRAVPDQLRVVTRYD 215 (269)
T ss_pred HHHHHHHcCCCCCCceEEEeccC
Confidence 55667777876 88888887 54
No 250
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=73.77 E-value=7.4 Score=37.86 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=30.5
Q ss_pred eeecCCCcccCchHHHHHHHHHHhCC-CcEEEEeCCC
Q 022336 193 TLTAPYSLTLWGPLSSSIEQCKSVFG-HDIAVFSNSA 228 (299)
Q Consensus 193 TLT~p~~~~l~Pgv~e~L~~Lke~fG-ikVaIVSNna 228 (299)
|++..|+.+++|.+.+.++.+++. | ++++||||+.
T Consensus 84 tis~~GEPTLy~~L~elI~~~k~~-g~~~tflvTNgs 119 (296)
T COG0731 84 TISLSGEPTLYPNLGELIEEIKKR-GKKTTFLVTNGS 119 (296)
T ss_pred EEeCCCCcccccCHHHHHHHHHhc-CCceEEEEeCCC
Confidence 355568888999999999999997 8 7999999987
No 251
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=73.64 E-value=2.3 Score=38.33 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=13.2
Q ss_pred CCcEEEEeccCeeecC
Q 022336 182 GFKGVVFDKDNTLTAP 197 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p 197 (299)
--|..+||+|||||..
T Consensus 4 ~~~la~FDfDgTLt~~ 19 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQ 19 (210)
T ss_pred cCcEEEEcCCCCCccC
Confidence 3578999999999943
No 252
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=72.87 E-value=17 Score=32.02 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=47.5
Q ss_pred CCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEe-----CCCCCCCCCccHHHHHHHHHH
Q 022336 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS-----NSAGLYEYDNDASKARKLEGK 246 (299)
Q Consensus 172 ~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVS-----NnaGs~~~d~~~e~a~~~lk~ 246 (299)
.|||..+++.||..+++=. | .+.....|....-++.++++ |+++++.- +.+ .+.|+.+.+.
T Consensus 14 ~id~~~vk~~gi~fviiKa----t-eG~~~~D~~~~~~~~~a~~~-Gl~vG~Yhy~~~~~~~--------~~qA~~f~~~ 79 (191)
T cd06413 14 DIDWARVRAQGVSFAYIKA----T-EGGDHVDKRFAENWRGARAA-GLPRGAYHFFTFCRSG--------AEQAANFIRN 79 (191)
T ss_pred CcCHHHHHhCCCcEEEEEE----c-CCCCccCHHHHHHHHHHHHc-CCceEEEEEEecCCCH--------HHHHHHHHHh
Confidence 5899999999999888864 4 45556778888889999997 99987652 222 4667777776
Q ss_pred cC
Q 022336 247 IG 248 (299)
Q Consensus 247 LG 248 (299)
++
T Consensus 80 ~~ 81 (191)
T cd06413 80 VP 81 (191)
T ss_pred cC
Confidence 63
No 253
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=72.68 E-value=3.2 Score=38.69 Aligned_cols=25 Identities=4% Similarity=-0.130 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl~D 286 (299)
+++++++++|+..++++++||+.+|
T Consensus 178 al~~ll~~~~~~~~~v~~~GD~~nD 202 (266)
T PRK10187 178 AIAAFMQEAPFAGRTPVFVGDDLTD 202 (266)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCccH
Confidence 5899999999999999999999999
No 254
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=71.88 E-value=15 Score=33.40 Aligned_cols=62 Identities=10% Similarity=0.071 Sum_probs=38.3
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHH
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKL 243 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~ 243 (299)
+.|++.|+.++..+. .+.++.. +.+.+.|+++.+.-+..++|.|+..|.+..|...+.++.+
T Consensus 30 ~~L~~~G~~g~~v~~--~iVpDd~----~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDvTpeAv~~l 91 (193)
T PRK09417 30 EWLASALTSPFEIET--RLIPDEQ----DLIEQTLIELVDEMGCDLVLTTGGTGPARRDVTPEATLAV 91 (193)
T ss_pred HHHHHcCCCCceEEE--EECCCCH----HHHHHHHHHHhhcCCCCEEEECCCCCCCCCCcHHHHHHHH
Confidence 456777877654444 3442332 3456667666542268999999988887766655554443
No 255
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=71.58 E-value=13 Score=37.69 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=39.8
Q ss_pred HHHHcCCcEEEE----eccCeeecCCCcccC-chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 177 ELQRRGFKGVVF----DKDNTLTAPYSLTLW-GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 177 ~Lk~~GIRaLVl----D~DNTLT~p~~~~l~-Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
.|.+.|++++++ ++||.|.+.+..... ....+-|+.+.++ ...+++.. ..| ...++.+++++|+++
T Consensus 187 lL~~~Gl~vn~l~d~~~~d~~~~~~~~~~~~g~ts~~~i~~~~~A-~~nlv~~~-~~g-------~~~A~~Lee~fGiPy 257 (457)
T TIGR02932 187 YFSEMGVDANILMDTEDFDSPMLPDKSIFTHGRTTVEDIADSANA-IATLALAK-YEG-------GNTAEFLQETFDVPS 257 (457)
T ss_pred HHHHcCCCEEEEeccccccCCCCCCccccCCCCCCHHHHHhhhhC-cEEEEEcc-cch-------HHHHHHHHHHHCCCe
Confidence 346789999765 578877733222211 2334556665543 33444432 222 567888888999987
Q ss_pred EE
Q 022336 252 IR 253 (299)
Q Consensus 252 I~ 253 (299)
+.
T Consensus 258 ~~ 259 (457)
T TIGR02932 258 IL 259 (457)
T ss_pred ec
Confidence 64
No 256
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=70.90 E-value=1.6 Score=38.13 Aligned_cols=10 Identities=60% Similarity=0.850 Sum_probs=9.4
Q ss_pred EEEeccCeee
Q 022336 186 VVFDKDNTLT 195 (299)
Q Consensus 186 LVlD~DNTLT 195 (299)
|+||+||||.
T Consensus 1 iiFDlDGTL~ 10 (205)
T TIGR01454 1 VVFDLDGVLV 10 (205)
T ss_pred CeecCcCccc
Confidence 6899999998
No 257
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=69.52 E-value=2 Score=35.91 Aligned_cols=13 Identities=31% Similarity=0.613 Sum_probs=11.0
Q ss_pred EEEEeccCeeecC
Q 022336 185 GVVFDKDNTLTAP 197 (299)
Q Consensus 185 aLVlD~DNTLT~p 197 (299)
+|+||+||||...
T Consensus 1 ~vlFDlDgtLv~~ 13 (183)
T TIGR01509 1 AILFDLDGVLVDT 13 (183)
T ss_pred CeeeccCCceech
Confidence 4899999999943
No 258
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=68.75 E-value=2.1 Score=36.22 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=21.3
Q ss_pred cCCcEEEccCCCCHHHHHHHHHHhCCCCCcEEEEc
Q 022336 247 IGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVD 281 (299)
Q Consensus 247 LGI~vI~ha~KKP~p~le~alk~lGi~PeEiamVG 281 (299)
-|+.++.-+. -|...++.+++.+|++..+++-..
T Consensus 104 ~~~~v~IvS~-~~~~~i~~~~~~~~i~~~~v~~~~ 137 (192)
T PF12710_consen 104 NGIKVVIVSG-SPDEIIEPIAERLGIDDDNVIGNE 137 (192)
T ss_dssp TTSEEEEEEE-EEHHHHHHHHHHTTSSEGGEEEEE
T ss_pred CCCEEEEECC-CcHHHHHHHHHHcCCCceEEEEEe
Confidence 4666543332 265567888889999876654443
No 259
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=67.37 E-value=91 Score=30.15 Aligned_cols=99 Identities=17% Similarity=0.264 Sum_probs=66.3
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
++|+ ...+.|-+++.||-+.+ . ..-.+.+.+..+-+.. +|..++++-... ...+..+.+..++|+
T Consensus 61 ~SFe~A~~~LGg~~i~l~~~~~-~----~~kgEs~~Dta~vls~-y~~D~iv~R~~~--------~~~~~~~a~~~~vPV 126 (305)
T PRK00856 61 LSFELAAKRLGADVINFSASTS-S----VSKGETLADTIRTLSA-MGADAIVIRHPQ--------SGAARLLAESSDVPV 126 (305)
T ss_pred HHHHHHHHHcCCcEEEeCCCcc-c----CCCCcCHHHHHHHHHh-cCCCEEEEeCCC--------hHHHHHHHHHCCCCE
Confidence 4443 44567999999986543 2 1223566777766665 467777776544 667888888889999
Q ss_pred EEccC-CCCHH--H---HHHHHHHhC-CCCCcEEEEcCCcc
Q 022336 252 IRHRV-KKPAG--T---AEEIEKHFG-CQSSQLIMVDMCRI 285 (299)
Q Consensus 252 I~ha~-KKP~p--~---le~alk~lG-i~PeEiamVGDrl~ 285 (299)
|--.. ..-+| . +..+.+++| ++--.+++|||-.+
T Consensus 127 INa~~g~~~HPtQ~LaDl~Ti~e~~G~l~g~kv~~vGD~~~ 167 (305)
T PRK00856 127 INAGDGSHQHPTQALLDLLTIREEFGRLEGLKVAIVGDIKH 167 (305)
T ss_pred EECCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEECCCCC
Confidence 86543 23344 2 556777787 56679999999643
No 260
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=66.86 E-value=31 Score=32.18 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=73.1
Q ss_pred CCccccCCcCCCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHH-HHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHH
Q 022336 162 LPHVTVPDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLS-SSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKA 240 (299)
Q Consensus 162 ~P~~~v~sI~~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~-e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a 240 (299)
+|. .++.+-+.+-+.|.+ +.+-|=.|+ ..++|.+. +..+.+++. |.+.+|+-...|- --.....
T Consensus 31 ~p~-~l~efId~pee~Lp~------i~~~Dl~I~----y~lHPDl~~~l~~~~~e~-g~kavIvp~~~~~---~g~~~~l 95 (217)
T PF02593_consen 31 IPE-DLPEFIDDPEEYLPK------IPEADLLIA----YGLHPDLTYELPEIAKEA-GVKAVIVPSESPK---PGLRRQL 95 (217)
T ss_pred CCc-cccccccChHHHccC------CCCCCEEEE----eccCchhHHHHHHHHHHc-CCCEEEEecCCCc---cchHHHH
Confidence 344 556666666666655 778887787 45677775 556667775 9998888776632 0123467
Q ss_pred HHHHHHcCCcEEEc----cCCCC-HHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 241 RKLEGKIGIKVIRH----RVKKP-AGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 241 ~~~lk~LGI~vI~h----a~KKP-~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
+..++.+|+.+... +..+. .+.+.+.+++||-+.=|+.+=+|.+-|
T Consensus 96 k~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGkP~~ei~v~~~~I~~ 146 (217)
T PF02593_consen 96 KKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGKPKVEIEVENGKIKD 146 (217)
T ss_pred HHHHHhcCceeecCccccccCCCCChhHHHHHHHhCCceEEEEecCCcEEE
Confidence 88888899866542 22221 235788889999888888777777655
No 261
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=66.41 E-value=42 Score=29.38 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=39.0
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.-++|+||.+..-.+.. .-...+.++.+.+. |.+++|.|--. +..+.++++...|+-.
T Consensus 45 iAildL~G~~l~l~S~R-~~~~~evi~~I~~~-G~PviVAtDV~------p~P~~V~Kia~~f~A~ 102 (138)
T PF04312_consen 45 IAILDLDGELLDLKSSR-NMSRSEVIEWISEY-GKPVIVATDVS------PPPETVKKIARSFNAV 102 (138)
T ss_pred EEEEecCCcEEEEEeec-CCCHHHHHHHHHHc-CCEEEEEecCC------CCcHHHHHHHHHhCCc
Confidence 45799999987333221 12233445555554 99999999876 3367899999999853
No 262
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.66 E-value=99 Score=27.16 Aligned_cols=52 Identities=25% Similarity=0.183 Sum_probs=31.2
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSAG 229 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNnaG 229 (299)
...+++.||.+|++|.+-- . ..... -......+.+.|.+. |. ++++++...+
T Consensus 71 ~~~~~~~~iPvv~~~~~~~-~-~~~V~~d~~~ag~~a~~~L~~~-g~~~i~~i~~~~~ 125 (265)
T cd06285 71 LDELTRRGVPFVLVLRHAG-T-SPAVTGDDVLGGRLATRHLLDL-GHRRIAVLAGPDY 125 (265)
T ss_pred HHHHHHcCCCEEEEccCCC-C-CCEEEeCcHHHHHHHHHHHHHC-CCccEEEEeCCcc
Confidence 4677788999999998510 0 01111 123444556667765 65 7888876553
No 263
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=63.80 E-value=48 Score=28.88 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=50.4
Q ss_pred CCcCCCCHHH-------HHHcCCcEEEEe-ccCeeecCCCcccCchHHHHHHHHHHhCCCc--EEEEeCCCCCCCCCccH
Q 022336 168 PDIRYIDWAE-------LQRRGFKGVVFD-KDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD--IAVFSNSAGLYEYDNDA 237 (299)
Q Consensus 168 ~sI~~Id~~~-------Lk~~GIRaLVlD-~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGik--VaIVSNnaGs~~~d~~~ 237 (299)
+||.+.|+.. +.+.|+..|=|| .||... ++ ..+.++..+.+++ ....+ +.+.++.. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~-~~-~~~~~~~v~~i~~---~~~~~v~v~lm~~~~--------~ 69 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFV-PN-LTFGPPVLEALRK---YTDLPIDVHLMVENP--------D 69 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-CC-cccCHHHHHHHHh---cCCCcEEEEeeeCCH--------H
Confidence 5677777643 456899999999 899888 32 2344455444443 22344 44667654 3
Q ss_pred HHHHHHHHHcCCcE-EEccCCCCHH-HHHHHHHHhCCC
Q 022336 238 SKARKLEGKIGIKV-IRHRVKKPAG-TAEEIEKHFGCQ 273 (299)
Q Consensus 238 e~a~~~lk~LGI~v-I~ha~KKP~p-~le~alk~lGi~ 273 (299)
..++... ..|... +.|...+... ...+.++.+|+.
T Consensus 70 ~~~~~~~-~~gadgv~vh~~~~~~~~~~~~~~~~~g~~ 106 (210)
T TIGR01163 70 RYIEDFA-EAGADIITVHPEASEHIHRLLQLIKDLGAK 106 (210)
T ss_pred HHHHHHH-HcCCCEEEEccCCchhHHHHHHHHHHcCCc
Confidence 3444333 677654 3344322222 233444555543
No 264
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=62.87 E-value=1.1e+02 Score=30.21 Aligned_cols=96 Identities=7% Similarity=0.030 Sum_probs=64.5
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
++|+ ...+.|-+++.+|-+++=. .-.+.+.+..+-+..- ..++++-... ...++.+++..++|+
T Consensus 61 ~SFe~A~~~LGg~~i~l~~~~s~~-----~kgEsl~Dtarvls~y--~D~Iv~R~~~--------~~~~~~~a~~~~vPV 125 (336)
T PRK03515 61 CSFEVAAYDQGARVTYLGPSGSQI-----GHKESIKDTARVLGRM--YDGIQYRGYG--------QEIVETLAEYAGVPV 125 (336)
T ss_pred HHHHHHHHHcCCcEEEeCCccccC-----CCCCCHHHHHHHHHHh--CcEEEEEeCC--------hHHHHHHHHhCCCCE
Confidence 4453 4466799999998765433 1246677777776663 5666665543 567888888889998
Q ss_pred EEccCCCCHH--H---HHHHHHHhC---CCCCcEEEEcCC
Q 022336 252 IRHRVKKPAG--T---AEEIEKHFG---CQSSQLIMVDMC 283 (299)
Q Consensus 252 I~ha~KKP~p--~---le~alk~lG---i~PeEiamVGDr 283 (299)
+--....-+| . +..+.+++| ++--.+++|||-
T Consensus 126 INa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~ 165 (336)
T PRK03515 126 WNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDA 165 (336)
T ss_pred EECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCC
Confidence 8643334445 2 456667775 666789999995
No 265
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=62.26 E-value=12 Score=34.57 Aligned_cols=44 Identities=14% Similarity=0.119 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 204 GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 204 Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
|-..+.++.+....|+.-+|+||+.. ...++...+++|..+..|
T Consensus 41 ~ls~~~~~~l~a~ggv~~IvLTn~dH-------vR~A~~ya~~~~a~i~~p 84 (199)
T PF14597_consen 41 PLSAHDWKHLDALGGVAWIVLTNRDH-------VRAAEDYAEQTGAKIYGP 84 (199)
T ss_dssp ---HHHHHHHHHTT--SEEE-SSGGG--------TTHHHHHHHS--EEEEE
T ss_pred cccHHHHHHHHhcCCceEEEEeCChh-------HhHHHHHHHHhCCeeecc
Confidence 33456777788766789999999973 346788889999876655
No 266
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=62.04 E-value=3.3 Score=35.71 Aligned_cols=14 Identities=50% Similarity=0.413 Sum_probs=11.2
Q ss_pred EEEEeccCeeecCC
Q 022336 185 GVVFDKDNTLTAPY 198 (299)
Q Consensus 185 aLVlD~DNTLT~p~ 198 (299)
+++||+||||+..+
T Consensus 1 ~a~FD~DgTL~~~~ 14 (202)
T TIGR01490 1 LAFFDFDGTLTAKD 14 (202)
T ss_pred CeEEccCCCCCCCc
Confidence 37999999999433
No 267
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=60.91 E-value=25 Score=35.72 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
.|.....|++|++. |.++.++||++
T Consensus 242 ~~ql~~fl~kL~~~-GKklFLiTNSP 266 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDH-GKKLFLITNSP 266 (510)
T ss_pred cHHHHHHHHHHHHh-cCcEEEEeCCc
Confidence 47888899999997 99999999998
No 268
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=60.72 E-value=3.9 Score=33.22 Aligned_cols=10 Identities=50% Similarity=0.913 Sum_probs=9.5
Q ss_pred EEEeccCeee
Q 022336 186 VVFDKDNTLT 195 (299)
Q Consensus 186 LVlD~DNTLT 195 (299)
|+||+||||.
T Consensus 1 iifD~dgtL~ 10 (176)
T PF13419_consen 1 IIFDLDGTLV 10 (176)
T ss_dssp EEEESBTTTE
T ss_pred cEEECCCCcE
Confidence 7999999999
No 269
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=60.54 E-value=40 Score=31.67 Aligned_cols=87 Identities=15% Similarity=0.206 Sum_probs=52.2
Q ss_pred cCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc-c-CCCCHHHHHHH---HHHh
Q 022336 196 APYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH-R-VKKPAGTAEEI---EKHF 270 (299)
Q Consensus 196 ~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h-a-~KKP~p~le~a---lk~l 270 (299)
+|.+....+.+.+.++.|++. |...+-||-++|..........+..+.+.+|++.+.| . ..+....++.. +..+
T Consensus 7 PP~~~~~~~~l~~~~~~l~~~-~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~ 85 (272)
T TIGR00676 7 PPKTDEGEENLWETVDRLSPL-DPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYREL 85 (272)
T ss_pred CcCCchhHHHHHHHHHHHhcC-CCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHC
Confidence 455444456667777788774 7788888888764322223345566666889988776 2 22333334333 3444
Q ss_pred CCCCCcEE-EEcCCcc
Q 022336 271 GCQSSQLI-MVDMCRI 285 (299)
Q Consensus 271 Gi~PeEia-mVGDrl~ 285 (299)
| ..+++ +.||...
T Consensus 86 G--i~nvL~l~GD~~~ 99 (272)
T TIGR00676 86 G--IRHILALRGDPPK 99 (272)
T ss_pred C--CCEEEEeCCCCCC
Confidence 5 56766 7888763
No 270
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=60.43 E-value=7 Score=35.49 Aligned_cols=28 Identities=0% Similarity=-0.134 Sum_probs=22.3
Q ss_pred HHHHHHHHhCC--CCCcEEEEcCCcccccc
Q 022336 262 TAEEIEKHFGC--QSSQLIMVDMCRIVIFP 289 (299)
Q Consensus 262 ~le~alk~lGi--~PeEiamVGDrl~DI~g 289 (299)
++..+++.+++ +++++++|||+.+|+..
T Consensus 185 al~~l~~~~~~~~~~~~~i~~GD~~nD~~m 214 (225)
T TIGR02461 185 AIKRLLDLYKLRPGAIESVGLGDSENDFPM 214 (225)
T ss_pred HHHHHHHHhccccCcccEEEEcCCHHHHHH
Confidence 46777788866 77799999999999543
No 271
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=60.30 E-value=43 Score=30.06 Aligned_cols=65 Identities=26% Similarity=0.327 Sum_probs=49.4
Q ss_pred CCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEE---eCCCCCCCCCccHHHHHHHHHHcC
Q 022336 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVF---SNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 172 ~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIV---SNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
.|||+.+++.|++.+++= -| .+.....|...+-++.+++. |++++.. +... + ..+.|+.+.+.++
T Consensus 19 ~IDw~~v~~~gi~Fv~iK----AT-EG~~~~D~~f~~n~~~A~~~-Gl~vGaYHf~~~~~-----~-~~~QA~~F~~~v~ 86 (190)
T cd06419 19 YIDFNSLQSNGISFVYLR----AT-QGASYFDDNFLSNFSRAQGT-GLSVGVIHTFSFSS-----T-AAAQYRYFIRKVG 86 (190)
T ss_pred ccCHHHHHhCCCeEEEEE----ee-cCCCccChhHHHHHHHHHHC-CCCEEEEEEeecCC-----C-HHHHHHHHHHhCC
Confidence 499999999999988874 25 67777888889999999997 9998865 3221 0 1467888888764
No 272
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=59.85 E-value=89 Score=25.02 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=50.9
Q ss_pred CCccccCCcCC--CCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHH
Q 022336 162 LPHVTVPDIRY--IDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASK 239 (299)
Q Consensus 162 ~P~~~v~sI~~--Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~ 239 (299)
.|++.+.++.. +++..++ | |.+++.+=.+-..+....-.+.+.+..+++.+. |+.++-||... .+.
T Consensus 3 ~p~f~l~~~~g~~~~l~~~~--g-k~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d~--------~~~ 70 (140)
T cd03017 3 APDFTLPDQDGETVSLSDLR--G-KPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPDS--------VES 70 (140)
T ss_pred CCCccccCCCCCEEeHHHhC--C-CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC--------HHH
Confidence 46677766543 5666664 4 455554321111122222334555555666654 78877777543 466
Q ss_pred HHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCC
Q 022336 240 ARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQS 274 (299)
Q Consensus 240 a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~P 274 (299)
+..+.+..++.+-... .+.. .+.+.+|+.-
T Consensus 71 ~~~~~~~~~~~~~~l~--D~~~---~~~~~~gv~~ 100 (140)
T cd03017 71 HAKFAEKYGLPFPLLS--DPDG---KLAKAYGVWG 100 (140)
T ss_pred HHHHHHHhCCCceEEE--CCcc---HHHHHhCCcc
Confidence 7777777776432211 1222 3556677643
No 273
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=59.06 E-value=54 Score=31.45 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=38.9
Q ss_pred HHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.+.|++.|. ++ -++..+.+++.+.++.+++. |+.+.|+||...+ +.+.++.+. ..|+.
T Consensus 50 ~~~g~~~v~------~~-GGEPll~~~~~~ii~~~~~~-g~~~~l~TNG~ll-----~~e~~~~L~-~~g~~ 107 (358)
T TIGR02109 50 AELGVLQLH------FS-GGEPLARPDLVELVAHARRL-GLYTNLITSGVGL-----TEARLDALA-DAGLD 107 (358)
T ss_pred HhcCCcEEE------Ee-CccccccccHHHHHHHHHHc-CCeEEEEeCCccC-----CHHHHHHHH-hCCCC
Confidence 345666554 35 46777888899999999886 8999999997532 244555444 34543
No 274
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=59.03 E-value=1.5e+02 Score=29.15 Aligned_cols=96 Identities=7% Similarity=0.051 Sum_probs=63.8
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
++|+ ..++.|-.++.+|.+++=. .-.+.+.+..+-+..- ..++++-... ...++.+++..++|+
T Consensus 61 ~SFE~A~~~LGg~~i~l~~~~s~~-----~kgEsl~Dtarvls~y--~D~iviR~~~--------~~~~~~~a~~~~vPV 125 (334)
T PRK12562 61 CSFEVAAYDQGARVTYLGPSGSQI-----GHKESIKDTARVLGRM--YDGIQYRGHG--------QEVVETLAEYAGVPV 125 (334)
T ss_pred HHHHHHHHHcCCeEEEeCCccccC-----CCCcCHHHHHHHHHHh--CCEEEEECCc--------hHHHHHHHHhCCCCE
Confidence 5554 3456899999998765422 2246677777777663 4555554433 567888888899998
Q ss_pred EEccCCCCHH--H---HHHHHHHhC---CCCCcEEEEcCC
Q 022336 252 IRHRVKKPAG--T---AEEIEKHFG---CQSSQLIMVDMC 283 (299)
Q Consensus 252 I~ha~KKP~p--~---le~alk~lG---i~PeEiamVGDr 283 (299)
+--....-+| . +..+.+++| ++--.+++|||-
T Consensus 126 INa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~ 165 (334)
T PRK12562 126 WNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDA 165 (334)
T ss_pred EECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCC
Confidence 8654334444 2 456667875 666789999996
No 275
>PLN02382 probable sucrose-phosphatase
Probab=58.87 E-value=6.7 Score=39.27 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=23.8
Q ss_pred HHHHHHHHHh---CCCCCcEEEEcCCccc
Q 022336 261 GTAEEIEKHF---GCQSSQLIMVDMCRIV 286 (299)
Q Consensus 261 p~le~alk~l---Gi~PeEiamVGDrl~D 286 (299)
.++..+++++ |+++++++.+||+.+|
T Consensus 178 ~Al~~L~~~~~~~gi~~~~~iafGDs~ND 206 (413)
T PLN02382 178 QALAYLLKKLKAEGKAPVNTLVCGDSGND 206 (413)
T ss_pred HHHHHHHHHhhhcCCChhcEEEEeCCHHH
Confidence 3588889999 9999999999999999
No 276
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=58.82 E-value=28 Score=33.47 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=58.3
Q ss_pred cCCcEEEEeccCeeecCCCcccC-------------------------chHHHHHHHHHHhCC-----CcEEEEeCCCCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLW-------------------------GPLSSSIEQCKSVFG-----HDIAVFSNSAGL 230 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~-------------------------Pgv~e~L~~Lke~fG-----ikVaIVSNnaGs 230 (299)
.-+| |.||-|+||..+....++ ......|.++++.++ ++++|||-..+
T Consensus 120 ~qlR-IAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~a- 197 (264)
T PF06189_consen 120 DQLR-IAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSA- 197 (264)
T ss_pred CceE-EEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCC-
Confidence 3456 899999999855433332 122344556666553 68999999874
Q ss_pred CCCCccHHHHHHHHHHcCCcE---EEc-cCCCCHHHHHHHHHHhCCCCCcEEEEcCCcccccccce
Q 022336 231 YEYDNDASKARKLEGKIGIKV---IRH-RVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIVIFPGPV 292 (299)
Q Consensus 231 ~~~d~~~e~a~~~lk~LGI~v---I~h-a~KKP~p~le~alk~lGi~PeEiamVGDrl~DI~gAn~ 292 (299)
+..+++-+-++..||.+ ++. +..| . .+++.++- =++..|+..-+.+|-.
T Consensus 198 ----pah~RvI~TLr~Wgv~vDEafFLgG~~K--~---~vL~~~~p----hIFFDDQ~~H~~~a~~ 250 (264)
T PF06189_consen 198 ----PAHERVIRTLRSWGVRVDEAFFLGGLPK--G---PVLKAFRP----HIFFDDQDGHLESASK 250 (264)
T ss_pred ----chhHHHHHHHHHcCCcHhHHHHhCCCch--h---HHHHhhCC----CEeecCchhhhhHhhc
Confidence 23678888888888842 232 3222 1 23343332 2677777766665543
No 277
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=58.75 E-value=1.3e+02 Score=29.51 Aligned_cols=98 Identities=8% Similarity=0.049 Sum_probs=64.3
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
++|+ ..++.|-.++.+|.+.+=. .-.+.+.+..+-+.. + ..++++-... ...++.+++..++|+
T Consensus 62 ~SFe~A~~~LGg~~i~l~~~~ss~-----~kgEsl~DTarvls~-y-~D~iv~R~~~--------~~~~~~~a~~~~vPV 126 (334)
T PRK01713 62 CAFEVAAYDQGAQVTYIDPNSSQI-----GHKESMKDTARVLGR-M-YDAIEYRGFK--------QSIVNELAEYAGVPV 126 (334)
T ss_pred HHHHHHHHHcCCeEEEcCCccccC-----CCCcCHHHHHHHHHH-h-CCEEEEEcCc--------hHHHHHHHHhCCCCE
Confidence 4554 3567899999987765422 123666777776665 3 5666665543 567888888899998
Q ss_pred EEccCCCCHH--H---HHHHHHHhC--CCCCcEEEEcCCcc
Q 022336 252 IRHRVKKPAG--T---AEEIEKHFG--CQSSQLIMVDMCRI 285 (299)
Q Consensus 252 I~ha~KKP~p--~---le~alk~lG--i~PeEiamVGDrl~ 285 (299)
+--....-+| . +..+.+++| ++--.+++|||..+
T Consensus 127 INa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~ 167 (334)
T PRK01713 127 FNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN 167 (334)
T ss_pred EECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc
Confidence 8643334444 2 455667776 56678999999633
No 278
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=58.42 E-value=30 Score=35.12 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=34.9
Q ss_pred HHHHcCCcEE-EEec---cCeeecCCCcccC-chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 177 ELQRRGFKGV-VFDK---DNTLTAPYSLTLW-GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 177 ~Lk~~GIRaL-VlD~---DNTLT~p~~~~l~-Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
.|.+.|++++ ++|. ||-+.+.+..... ....+-|+.+-++ ...+++ +...| ...++.+++++|+++
T Consensus 183 lL~~~Gl~v~~~~d~~~~d~~~~~~~~~~~~g~~~~~~i~~~~~A-~~niv~-~~~~~-------~~~A~~Le~~fGiPy 253 (454)
T cd01973 183 YLSEMDVEANILMDTEDFDSPMLPDKSAVTHGNTTIEDIADSANA-IATIAL-ARYEG-------GKAAEFLQKKFDVPA 253 (454)
T ss_pred HHHHcCCCEEEeeccccccCCCCCcccccCCCCCCHHHHHHhhhC-cEEEEE-Chhhh-------HHHHHHHHHHHCCCe
Confidence 4457899986 4554 5555522221121 1223444444443 223333 22221 467777888888887
Q ss_pred EE
Q 022336 252 IR 253 (299)
Q Consensus 252 I~ 253 (299)
+.
T Consensus 254 i~ 255 (454)
T cd01973 254 IL 255 (454)
T ss_pred ec
Confidence 63
No 279
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.15 E-value=35 Score=32.84 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=17.4
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCC
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNn 227 (299)
..+.|++.+.++.+.+. ..-+|+|-+
T Consensus 82 a~lvPgA~etm~~l~~~--~tp~v~STS 107 (315)
T COG4030 82 AKLVPGAEETMATLQER--WTPVVISTS 107 (315)
T ss_pred cccCCChHHHHHHHhcc--CCceEEecc
Confidence 44668888888887664 455566654
No 280
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=58.04 E-value=5.5 Score=34.77 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=11.5
Q ss_pred cEEEEeccCeeec
Q 022336 184 KGVVFDKDNTLTA 196 (299)
Q Consensus 184 RaLVlD~DNTLT~ 196 (299)
++||||+||||+.
T Consensus 1 ~~viFDldgvL~d 13 (199)
T PRK09456 1 MLYIFDLGNVIVD 13 (199)
T ss_pred CEEEEeCCCcccc
Confidence 4799999999994
No 281
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=57.84 E-value=11 Score=35.55 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=13.8
Q ss_pred cCCcEEEEeccCeee
Q 022336 181 RGFKGVVFDKDNTLT 195 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT 195 (299)
+.||+|+||++|||.
T Consensus 5 ~~iravtfD~~~tLl 19 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLL 19 (237)
T ss_pred cceEEEEEeCCCcee
Confidence 578999999999997
No 282
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=57.50 E-value=1.2e+02 Score=26.51 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=31.7
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCc--ccCchHHHHHHHHHHhCCC-cEEEEeCCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSL--TLWGPLSSSIEQCKSVFGH-DIAVFSNSAG 229 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~--~l~Pgv~e~L~~Lke~fGi-kVaIVSNnaG 229 (299)
.+.+++.|+.+|++|.+-.-...... .-......+.+.|.+. |. +++++++..+
T Consensus 73 ~~~~~~~~ipvv~i~~~~~~~~~~~V~~d~~~~g~~a~~~l~~~-g~~~i~~i~~~~~ 129 (270)
T cd01545 73 LDLLDEAGVPYVRIAPGTPDPDSPCVRIDDRAAAREMTRHLIDL-GHRRIAFIAGPPD 129 (270)
T ss_pred HHHHHhcCCCEEEEecCCCCCCCCeEEeccHHHHHHHHHHHHHC-CCceEEEEeCCCC
Confidence 35677899999999876321100111 1223445566666665 65 7898886653
No 283
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=56.82 E-value=1.1e+02 Score=27.16 Aligned_cols=52 Identities=10% Similarity=-0.095 Sum_probs=30.2
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
+.|++.|+.+|++|.+......-...-......+.+.|.+. .-++++++...
T Consensus 72 ~~l~~~~iPvv~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~-~~~i~~i~~~~ 123 (269)
T cd06297 72 ERRLPTERPVVLVDAENPRFDSFYLDNRLGGRLAGAYLADF-PGRIGAITVEE 123 (269)
T ss_pred HHHhhcCCCEEEEccCCCCCCEEEECcHHHHHHHHHHHHHh-CCceEEEeCcc
Confidence 66778899999999875221000111223445555666665 55788876543
No 284
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=56.75 E-value=36 Score=26.64 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=34.7
Q ss_pred HcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 180 RRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
+.+.+.||+|+-++-.-+ ..--.-+.+..+++++. |.++.++-=++ .+..+.+..|+.
T Consensus 38 ~~~~~~vvlDls~v~~iD--ssg~~~l~~~~~~~~~~-g~~l~l~g~~~----------~v~~~l~~~gl~ 95 (109)
T cd07041 38 RRRARGVIIDLTGVPVID--SAVARHLLRLARALRLL-GARTILTGIRP----------EVAQTLVELGID 95 (109)
T ss_pred HcCCCEEEEECCCCchhc--HHHHHHHHHHHHHHHHc-CCeEEEEeCCH----------HHHHHHHHhCCC
Confidence 357788888888775511 11122334455566665 77777775543 566666776764
No 285
>PLN02229 alpha-galactosidase
Probab=55.70 E-value=1e+02 Score=31.54 Aligned_cols=101 Identities=17% Similarity=0.282 Sum_probs=66.6
Q ss_pred hhHHHHHHHhccCCCHHHHHHHHHHHhcCCCCcCCccccCCcCCCCHHHHHHcCCcEEEEec---------cCeeecCCC
Q 022336 129 MWWSQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFDK---------DNTLTAPYS 199 (299)
Q Consensus 129 ~~~~~~~~~~~q~~N~~gi~~~~~~~~~~p~ll~P~~~v~sI~~Id~~~Lk~~GIRaLVlD~---------DNTLT~p~~ 199 (299)
|.|.- +...+.++|=.-|...+..+.. .-|++.|++.|++|- +|-+. ++.
T Consensus 65 mGWnS-Wn~~~~~i~E~~i~~~ad~~v~-------------------~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~-~d~ 123 (427)
T PLN02229 65 MGWNS-WNFFACNINETVIKETADALVS-------------------TGLADLGYIHVNIDDCWSNLKRDSKGQLV-PDP 123 (427)
T ss_pred ceEEc-hhhhCcccCHHHHHHHHHHHHH-------------------hHHHhCCCEEEEEcCCcCCCCcCCCCCEE-ECh
Confidence 54432 2466777887777777776543 457889999999884 35566 455
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCC-------CCCccHHHHHHHHHHcCCcEEE
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLY-------EYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~-------~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
..++.|.....+.+.+. |.|.+|-|... .. .++.-...++.+ +..||+++-
T Consensus 124 ~rFP~G~k~ladyiH~~-GlKfGIy~d~G-~~TC~~~pGS~g~e~~DA~~f-A~WGVDylK 181 (427)
T PLN02229 124 KTFPSGIKLLADYVHSK-GLKLGIYSDAG-VFTCQVRPGSLFHEVDDADIF-ASWGVDYLK 181 (427)
T ss_pred hhcCCcHHHHHHHHHHC-CCceEEeccCC-CcccCCCCCCccHHHHHHHHH-HHcCCCEEE
Confidence 55666777777788887 99999998652 21 222223345554 458998774
No 286
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=55.44 E-value=27 Score=33.08 Aligned_cols=26 Identities=8% Similarity=0.148 Sum_probs=20.7
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNn 227 (299)
.-.|+..+++++|++. |+++++...-
T Consensus 71 ~~FPdp~~mi~~Lh~~-G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDR-GLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHC-CCEEEEEeCC
Confidence 3457788999999997 9998877654
No 287
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=55.31 E-value=34 Score=32.64 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=52.1
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHc-C---C-cEE---Ec---cCCCCHHHHHHHHHH
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI-G---I-KVI---RH---RVKKPAGTAEEIEKH 269 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~L-G---I-~vI---~h---a~KKP~p~le~alk~ 269 (299)
.+++.+..+++.++.. |+++.|.|... ..|+++.=.. + + +++ +. +.|.-...+.+|.+.
T Consensus 123 ~v~aDv~~a~e~w~~~-g~~vyIYSSgs---------v~AqKllfg~s~~gdl~~y~~gyfDt~iG~K~e~~sy~~I~~~ 192 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGE-GVRVYIYSSGS---------VAAQKLLFGYSDAGDLRKYISGYFDTTIGLKVESQSYKKIGHL 192 (254)
T ss_pred cccchhHHHHHHHhhc-CceEEEEcCCc---------HHHHHHHHcccCcchHHHHhhhhhhccccceehhHHHHHHHHH
Confidence 5678999999999987 99999999875 3444333221 1 1 111 11 333332358899999
Q ss_pred hCCCCCcEEEEcCCccc
Q 022336 270 FGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 270 lGi~PeEiamVGDrl~D 286 (299)
.|.++.|+++.-|-..-
T Consensus 193 Ig~s~~eiLfLTd~~~E 209 (254)
T KOG2630|consen 193 IGKSPREILFLTDVPRE 209 (254)
T ss_pred hCCChhheEEeccChHH
Confidence 99999999999886554
No 288
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=54.92 E-value=79 Score=29.03 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=31.8
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
+..|++.|+.+|++|.+-.=..-..+. -..+...+.+.|.+. |. +|+++++..
T Consensus 133 ~~~l~~~~iPvV~~~~~~~~~~~~~V~~dn~~~~~~~~~~L~~~-G~~~I~~i~~~~ 188 (327)
T TIGR02417 133 YQKLQNEGLPVVALDRSLDDEHFCSVISDDVDAAAELIERLLSQ-HADEFWYLGAQP 188 (327)
T ss_pred HHHHHhcCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHC-CCCeEEEEeCcc
Confidence 466778899999999752100000111 123455666777776 76 699888654
No 289
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=54.89 E-value=1.6e+02 Score=28.96 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=62.3
Q ss_pred HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccC
Q 022336 177 ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~ 256 (299)
..++.|-+++.+|-.+.=. .-.+.+.+..+-+.. + ..++|+-... ...++.+++..++|+|--..
T Consensus 67 A~~~LGg~~i~l~~~~ss~-----~kgEsl~Dt~rvls~-y-~D~iviR~~~--------~~~~~~~a~~~~vPVINa~~ 131 (331)
T PRK02102 67 AAIDLGAHVTYLGPNDSQL-----GKKESIEDTARVLGR-M-YDGIEYRGFK--------QEIVEELAKYSGVPVWNGLT 131 (331)
T ss_pred HHHHcCCCEEEcCcccccC-----CCCcCHHHHHHHHhh-c-CCEEEEECCc--------hHHHHHHHHhCCCCEEECCC
Confidence 4457899999888765432 224667777776655 3 5666666543 56788888888999886443
Q ss_pred CCCHH--H---HHHHHHHhC-CCCCcEEEEcCC
Q 022336 257 KKPAG--T---AEEIEKHFG-CQSSQLIMVDMC 283 (299)
Q Consensus 257 KKP~p--~---le~alk~lG-i~PeEiamVGDr 283 (299)
..-+| . +..+.+++| ++--.+++|||.
T Consensus 132 ~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~ 164 (331)
T PRK02102 132 DEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDG 164 (331)
T ss_pred CCCChHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 33444 2 445667777 677889999996
No 290
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=54.79 E-value=94 Score=29.33 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=61.6
Q ss_pred HHHhccCCCHHHHHHHHHHHh-cCCCCcCC---ccccCCcCCCC----HHHHHHcCCcEEEEeccCeeecCCCcccCchH
Q 022336 135 KAALGQRINVEGIVSSTVVFA-KDRHLALP---HVTVPDIRYID----WAELQRRGFKGVVFDKDNTLTAPYSLTLWGPL 206 (299)
Q Consensus 135 ~~~~~q~~N~~gi~~~~~~~~-~~p~ll~P---~~~v~sI~~Id----~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv 206 (299)
.+++.+.+|+..+...++.+- +++. .| =.|.+.|++.- .+.+++.|+.++++- + -+.++.
T Consensus 64 ~~AL~~G~~~~~~~~~~~~~r~~~~~--~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip---------D-Lp~ee~ 131 (258)
T PRK13111 64 LRALAAGVTLADVFELVREIREKDPT--IPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP---------D-LPPEEA 131 (258)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCC--CCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC---------C-CCHHHH
Confidence 678999999999999999754 2233 24 23345555544 467788898877761 1 233677
Q ss_pred HHHHHHHHHhCCCc-EEEEeCCCCCCCCCccHHHHHHHHHH
Q 022336 207 SSSIEQCKSVFGHD-IAVFSNSAGLYEYDNDASKARKLEGK 246 (299)
Q Consensus 207 ~e~L~~Lke~fGik-VaIVSNnaGs~~~d~~~e~a~~~lk~ 246 (299)
.++++.+++. |+. |.++|-+. ..++++.+.+.
T Consensus 132 ~~~~~~~~~~-gl~~I~lvap~t-------~~eri~~i~~~ 164 (258)
T PRK13111 132 EELRAAAKKH-GLDLIFLVAPTT-------TDERLKKIASH 164 (258)
T ss_pred HHHHHHHHHc-CCcEEEEeCCCC-------CHHHHHHHHHh
Confidence 7888888885 985 55577765 25677776665
No 291
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=54.11 E-value=1.2e+02 Score=24.65 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=55.0
Q ss_pred CcCCccccCCcC--CCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccH
Q 022336 160 LALPHVTVPDIR--YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDA 237 (299)
Q Consensus 160 ll~P~~~v~sI~--~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~ 237 (299)
...|++.+.+.. .++++.++..+. +|++-.=+|-+ +....-.+.+.+..+++++. |+.++-||... .
T Consensus 5 ~~~p~~~l~~~~g~~v~l~~~~g~k~-~vl~f~~~~~c-~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~--------~ 73 (149)
T cd03018 5 DKAPDFELPDQNGQEVRLSEFRGRKP-VVLVFFPLAFT-PVCTKELCALRDSLELFEAA-GAEVLGISVDS--------P 73 (149)
T ss_pred CcCCCcEecCCCCCEEeHHHHcCCCe-EEEEEeCCCCC-ccHHHHHHHHHHHHHHHHhC-CCEEEEecCCC--------H
Confidence 346777776653 366666643222 23333323333 33333445666666677665 78888787654 4
Q ss_pred HHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCC
Q 022336 238 SKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQ 273 (299)
Q Consensus 238 e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~ 273 (299)
+.++.+.+..++.+......++. .++.+.+|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~g~~ 106 (149)
T cd03018 74 FSLRAWAEENGLTFPLLSDFWPH---GEVAKAYGVF 106 (149)
T ss_pred HHHHHHHHhcCCCceEecCCCch---hHHHHHhCCc
Confidence 56777788777654322222222 3455667764
No 292
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=53.70 E-value=44 Score=33.40 Aligned_cols=70 Identities=23% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHcCCcEEEE-e----ccCeeecCCCcccCch-HHHHHHHHHHhCCCcEEEEeC-CCCCCCCCccHHHHHHHHHHcC
Q 022336 176 AELQRRGFKGVVF-D----KDNTLTAPYSLTLWGP-LSSSIEQCKSVFGHDIAVFSN-SAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 176 ~~Lk~~GIRaLVl-D----~DNTLT~p~~~~l~Pg-v~e~L~~Lke~fGikVaIVSN-naGs~~~d~~~e~a~~~lk~LG 248 (299)
..|++.|++++++ | +||+++......+..+ ..+-|+++.++ ...|++... ..| ...++.+.+++|
T Consensus 175 ~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~~i~~~~~A-~lniv~~~~~~~g-------~~~A~~L~e~~g 246 (429)
T cd03466 175 EILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPISEIKGMGGA-KATIELGMFVDHG-------LSAGSYLEEEFG 246 (429)
T ss_pred HHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHHHHHhhccC-cEEEEEccCccch-------HHHHHHHHHHHC
Confidence 3456789998653 4 6888874433333222 34445554443 234444311 111 567888888999
Q ss_pred CcEEE
Q 022336 249 IKVIR 253 (299)
Q Consensus 249 I~vI~ 253 (299)
++++.
T Consensus 247 iP~~~ 251 (429)
T cd03466 247 IPNYR 251 (429)
T ss_pred CCeee
Confidence 98764
No 293
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=53.62 E-value=42 Score=27.09 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=42.1
Q ss_pred HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE
Q 022336 177 ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI 252 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI 252 (299)
.+.+.+.+.|++|+.++=. -+...-.-+...++.+++. |.++++++.++ .+......+|+..+
T Consensus 38 ~~~~~~~~~ivIDls~v~~--~dS~gl~~L~~~~~~~~~~-g~~~~l~~i~p----------~v~~~~~~~gl~~~ 100 (117)
T COG1366 38 VIAASGARGLVIDLSGVDF--MDSAGLGVLVALLKSARLR-GVELVLVGIQP----------EVARTLELTGLDKS 100 (117)
T ss_pred HHhcCCCcEEEEECCCCce--echHHHHHHHHHHHHHHhc-CCeEEEEeCCH----------HHHHHHHHhCchhh
Confidence 3445788889999998854 1111122334556677776 88999988875 67777788887643
No 294
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=52.78 E-value=24 Score=32.10 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=23.3
Q ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 221 IAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 221 VaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
++.+|+.+|++. ...++.+++++|++++..
T Consensus 2 ~ItIsG~pGsG~----TTva~~lAe~~gl~~vsa 31 (179)
T COG1102 2 VITISGLPGSGK----TTVARELAEHLGLKLVSA 31 (179)
T ss_pred EEEeccCCCCCh----hHHHHHHHHHhCCceeec
Confidence 567899998873 457788889999988763
No 295
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=52.70 E-value=43 Score=32.47 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=35.2
Q ss_pred CCCHHHHHH-cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 172 YIDWAELQR-RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 172 ~Id~~~Lk~-~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
.++.+.+.+ ...+.+.|.. -|+..+.|.+.+.++.+++. |+.++|+||..
T Consensus 118 ~v~~~~~~ea~~~~~v~iSl------~GEPlL~p~l~eli~~~k~~-Gi~~~L~TNG~ 168 (322)
T PRK13762 118 KVDREKFEEAMEPKHVAISL------SGEPTLYPYLPELIEEFHKR-GFTTFLVTNGT 168 (322)
T ss_pred CCCHHHhhhccCCCEEEEeC------CccccchhhHHHHHHHHHHc-CCCEEEECCCC
Confidence 344443332 3455555433 36777788999999999997 99999999985
No 296
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=52.54 E-value=1.6e+02 Score=25.64 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=29.8
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCc--ccCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSL--TLWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~--~l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
...+++.|+.+|++|.+-.-...... .-......+.+.+.+. |. +++++++..
T Consensus 75 ~~~~~~~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~-g~~~i~~i~~~~ 130 (268)
T cd06271 75 VALLLERGFPFVTHGRTELGDPHPWVDFDNEAAAYQAVRRLIAL-GHRRIALLNPPE 130 (268)
T ss_pred HHHHHhcCCCEEEECCcCCCCCCCeEeeCcHHHHHHHHHHHHHc-CCCcEEEecCcc
Confidence 45677889999999865211100001 1123344555566665 65 688887654
No 297
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=52.53 E-value=1.6e+02 Score=25.73 Aligned_cols=52 Identities=19% Similarity=0.085 Sum_probs=29.5
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
..|++.|+..|++|.+-.-..-.... -......+.+.|.+. |. +|+++++..
T Consensus 72 ~~l~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~-g~~~i~~l~~~~ 126 (268)
T cd06298 72 EEFKRSPTPVVLAGSVDEDNELPSVNIDYKKAAFEATELLIKN-GHKKIAFISGPL 126 (268)
T ss_pred HHHhcCCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHHc-CCceEEEEeCCc
Confidence 55667899999998752111001111 123444556666665 65 688887654
No 298
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=51.92 E-value=51 Score=34.24 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=53.8
Q ss_pred CCCCHHHHHHcCCc---------EEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHH
Q 022336 171 RYIDWAELQRRGFK---------GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKAR 241 (299)
Q Consensus 171 ~~Id~~~Lk~~GIR---------aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~ 241 (299)
..|||+.-.+-|=| |||.--||+++.-.+..+-+.-...+++|++. |-+.+|+=|+..-. .+...+.+.
T Consensus 125 ~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~i-gKPFvillNs~~P~-s~et~~L~~ 202 (492)
T PF09547_consen 125 EEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEI-GKPFVILLNSTKPY-SEETQELAE 202 (492)
T ss_pred CCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCC-CHHHHHHHH
Confidence 45888776655543 56666899998433333334445678899996 99988888886211 112234566
Q ss_pred HHHHHcCCcEEEcc
Q 022336 242 KLEGKIGIKVIRHR 255 (299)
Q Consensus 242 ~~lk~LGI~vI~ha 255 (299)
.+.++++++++.-.
T Consensus 203 eL~ekY~vpVlpvn 216 (492)
T PF09547_consen 203 ELEEKYDVPVLPVN 216 (492)
T ss_pred HHHHHhCCcEEEee
Confidence 77778899988654
No 299
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=51.70 E-value=1.6e+02 Score=25.61 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=31.9
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCc--ccCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSL--TLWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~--~l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
++.|+++|+.+|++|.|-.=-..... ....+...+.+.+.+. |. +|+++++..
T Consensus 71 ~~~l~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~-g~~~I~~i~~~~ 126 (265)
T cd06299 71 LEDLLKRGIPVVFVDREITGSPIPFVTSDPQPGMTEAVSLLVAL-GHKKIGYISGPQ 126 (265)
T ss_pred HHHHHhCCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHc-CCCcEEEEeCCC
Confidence 67888999999999876210000001 1123445556667665 65 799987665
No 300
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=51.63 E-value=2e+02 Score=28.24 Aligned_cols=96 Identities=7% Similarity=-0.008 Sum_probs=63.8
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
++|+ ..++.|-+++++|...+=. .-.+.+.+..+-+.. + ..++++-... ...++.+++..++|+
T Consensus 61 ~SFe~A~~~LGg~~i~l~~~~ss~-----~kgEsl~DTarvls~-y-~D~iviR~~~--------~~~~~~~a~~s~vPV 125 (332)
T PRK04284 61 CAFEVAAYDQGAHVTYLGPTGSQM-----GKKESTKDTARVLGG-M-YDGIEYRGFS--------QRTVETLAEYSGVPV 125 (332)
T ss_pred HHHHHHHHHcCCeEEEcCCccccC-----CCCcCHHHHHHHHHH-h-CCEEEEecCc--------hHHHHHHHHhCCCCE
Confidence 4453 4457899999988776533 123667777777666 3 5677776554 567888888889998
Q ss_pred EEccCCCCHH--H---HHHHHHH-hC-CCCCcEEEEcCC
Q 022336 252 IRHRVKKPAG--T---AEEIEKH-FG-CQSSQLIMVDMC 283 (299)
Q Consensus 252 I~ha~KKP~p--~---le~alk~-lG-i~PeEiamVGDr 283 (299)
+--....-+| . +..+.++ +| ++--.+++|||-
T Consensus 126 INa~~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~ 164 (332)
T PRK04284 126 WNGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDG 164 (332)
T ss_pred EECCCCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCC
Confidence 8643333444 2 4566677 45 566789999995
No 301
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=51.46 E-value=41 Score=29.39 Aligned_cols=68 Identities=15% Similarity=0.210 Sum_probs=47.7
Q ss_pred CCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 172 ~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
.|||+.+++.||+.+++=. | .+.....|.....++.++++ |+++++.==-.+. ..-...++.+.+.++
T Consensus 11 ~id~~~~k~~gi~fviiKa----t-eG~~y~D~~~~~~~~~a~~a-Gl~~G~Yhy~~~~---~~a~~qA~~f~~~~~ 78 (184)
T cd06525 11 NINFNAVKDSGVEVVYIKA----T-EGTTFVDSYFNENYNGAKAA-GLKVGFYHFLVGT---SNPEEQAENFYNTIK 78 (184)
T ss_pred CCCHHHHHhCCCeEEEEEe----c-CCCcccCHhHHHHHHHHHHC-CCceEEEEEeeCC---CCHHHHHHHHHHhcc
Confidence 5899999999999888865 4 45566788899999999997 9987743211100 011467777777654
No 302
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=51.19 E-value=95 Score=28.53 Aligned_cols=93 Identities=22% Similarity=0.324 Sum_probs=55.0
Q ss_pred CCcCCCCH-------HHHHHcCCcEEEEec-cCeeecCCCcccCchHHHHHHHH-HHhCCCcEEEEeCCCCCCCCCccHH
Q 022336 168 PDIRYIDW-------AELQRRGFKGVVFDK-DNTLTAPYSLTLWGPLSSSIEQC-KSVFGHDIAVFSNSAGLYEYDNDAS 238 (299)
Q Consensus 168 ~sI~~Id~-------~~Lk~~GIRaLVlD~-DNTLT~p~~~~l~Pgv~e~L~~L-ke~fGikVaIVSNnaGs~~~d~~~e 238 (299)
+||...|+ +.|.+.|+..+-+|+ ||..+ |+ ..+.|...+++++. -. ..+.+=++..++ ..
T Consensus 4 pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fv-pn-~tfg~~~i~~i~~~~~~-~~~dvHLMv~~p--------~~ 72 (220)
T PRK08883 4 PSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYV-PN-LTFGAPICKALRDYGIT-APIDVHLMVKPV--------DR 72 (220)
T ss_pred hhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCccc-Cc-cccCHHHHHHHHHhCCC-CCEEEEeccCCH--------HH
Confidence 45656665 345568999999996 89998 43 56778888877764 23 245666777666 44
Q ss_pred HHHHHHHHcCCcEE-EccCCCCHH-HHHHHHHHhCC
Q 022336 239 KARKLEGKIGIKVI-RHRVKKPAG-TAEEIEKHFGC 272 (299)
Q Consensus 239 ~a~~~lk~LGI~vI-~ha~KKP~p-~le~alk~lGi 272 (299)
.++.+.+ .|...+ .|....+++ .+.+.++..|+
T Consensus 73 ~i~~~~~-~gad~i~~H~Ea~~~~~~~l~~ik~~g~ 107 (220)
T PRK08883 73 IIPDFAK-AGASMITFHVEASEHVDRTLQLIKEHGC 107 (220)
T ss_pred HHHHHHH-hCCCEEEEcccCcccHHHHHHHHHHcCC
Confidence 4444433 355433 343222222 23344555664
No 303
>PLN02591 tryptophan synthase
Probab=50.85 E-value=1e+02 Score=29.11 Aligned_cols=94 Identities=12% Similarity=0.125 Sum_probs=60.8
Q ss_pred HHHHhccCCCHHHHHHHHHHHhcCCCCcCCc---cccCCcCCCC----HHHHHHcCCcEEEEeccCeeecCCCcccCchH
Q 022336 134 LKAALGQRINVEGIVSSTVVFAKDRHLALPH---VTVPDIRYID----WAELQRRGFKGVVFDKDNTLTAPYSLTLWGPL 206 (299)
Q Consensus 134 ~~~~~~q~~N~~gi~~~~~~~~~~p~ll~P~---~~v~sI~~Id----~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv 206 (299)
-.+++.+.+|+..+...++.+-++++ .|= .|++.|++.- ++.+++.|+.+|++= + -+.++.
T Consensus 53 ~~rAL~~G~~~~~~~~~~~~~r~~~~--~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~Gviip--------D--LP~ee~ 120 (250)
T PLN02591 53 ATRALEKGTTLDSVISMLKEVAPQLS--CPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVP--------D--LPLEET 120 (250)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhcCCC--CCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeC--------C--CCHHHH
Confidence 36889999999999999997543333 342 2334455433 356678887665542 1 234677
Q ss_pred HHHHHHHHHhCCCc-EEEEeCCCCCCCCCccHHHHHHHHHHc
Q 022336 207 SSSIEQCKSVFGHD-IAVFSNSAGLYEYDNDASKARKLEGKI 247 (299)
Q Consensus 207 ~e~L~~Lke~fGik-VaIVSNnaGs~~~d~~~e~a~~~lk~L 247 (299)
.++.+.+++. |+. |.++|-+. ..++++.+.+.-
T Consensus 121 ~~~~~~~~~~-gl~~I~lv~Ptt-------~~~ri~~ia~~~ 154 (250)
T PLN02591 121 EALRAEAAKN-GIELVLLTTPTT-------PTERMKAIAEAS 154 (250)
T ss_pred HHHHHHHHHc-CCeEEEEeCCCC-------CHHHHHHHHHhC
Confidence 7778888885 985 66775554 256777777663
No 304
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.66 E-value=1.1e+02 Score=26.88 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=30.8
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
.+.|++.|+.+|++|.+-.-.....+. -......+.+.+.+. |. ++++++...
T Consensus 73 ~~~l~~~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~-g~~~i~~i~~~~ 128 (268)
T cd06277 73 IKEIKELGIPFVLVDHYIPNEKADCVLTDNYSGAYAATEYLIEK-GHRKIGFVGDPL 128 (268)
T ss_pred HHHHhhcCCCEEEEccCCCCCCCCEEEecchHHHHHHHHHHHHC-CCCcEEEECCCC
Confidence 567888999999999763111001111 123334455666665 65 688886554
No 305
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=50.20 E-value=2.4e+02 Score=27.13 Aligned_cols=96 Identities=11% Similarity=0.105 Sum_probs=62.4
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
.+|+ ..++.|-+++.||-.++ . ..-.+.+.+.++-+.. + ..++++=... ...++.+++..++++
T Consensus 55 ~SFe~A~~~LGg~~i~l~~~~s-s----~~kgEsl~Dt~~vls~-y-~D~iv~R~~~--------~~~~~~~a~~~~vPV 119 (304)
T TIGR00658 55 VSFEVAAYQLGGHPLYLNPNDL-Q----LGRGESIKDTARVLSR-Y-VDGIMARVYK--------HEDVEELAKYASVPV 119 (304)
T ss_pred HHHHHHHHHcCCCEEEeCCccc-c----CCCCCCHHHHHHHHHH-h-CCEEEEECCC--------hHHHHHHHHhCCCCE
Confidence 4453 44678999999976543 1 1224667777777665 3 5666665443 567888888899998
Q ss_pred EEccCCCCHH--H---HHHHHHHhC-CCCCcEEEEcCC
Q 022336 252 IRHRVKKPAG--T---AEEIEKHFG-CQSSQLIMVDMC 283 (299)
Q Consensus 252 I~ha~KKP~p--~---le~alk~lG-i~PeEiamVGDr 283 (299)
+--....-+| . +..+.+++| ++--.+++|||-
T Consensus 120 INa~~~~~HPtQaL~Dl~Ti~e~~g~l~g~~v~~vGd~ 157 (304)
T TIGR00658 120 INGLTDLFHPCQALADLLTIIEHFGKLKGVKVVYVGDG 157 (304)
T ss_pred EECCCCCCChHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Confidence 8643333444 2 456667777 555679999994
No 306
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=50.16 E-value=42 Score=31.85 Aligned_cols=82 Identities=12% Similarity=0.167 Sum_probs=43.2
Q ss_pred cccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC-----cEEEc-----------cCCCCHHH-
Q 022336 200 LTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI-----KVIRH-----------RVKKPAGT- 262 (299)
Q Consensus 200 ~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI-----~vI~h-----------a~KKP~p~- 262 (299)
..+-+++.+.++.|.+. ++++.|+|.+- ..-++.+++..|+ .++.. +-+.|.-.
T Consensus 89 i~LRdg~~~~f~~L~~~-~IP~lIFSAGl--------gdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~ 159 (246)
T PF05822_consen 89 IMLRDGVEEFFDKLEEH-NIPLLIFSAGL--------GDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHT 159 (246)
T ss_dssp --B-BTHHHHHHHHHCT-T--EEEEEEEE--------HHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---T
T ss_pred hhhhcCHHHHHHHHHhc-CCCEEEEeCCc--------HHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEeecCCCceEE
Confidence 34557888889888886 89999999654 4566666666553 22210 22333210
Q ss_pred ---HHHHH---HHh-CC-CCCcEEEEcCCccccccc
Q 022336 263 ---AEEIE---KHF-GC-QSSQLIMVDMCRIVIFPG 290 (299)
Q Consensus 263 ---le~al---k~l-Gi-~PeEiamVGDrl~DI~gA 290 (299)
=+.++ ..+ .+ ...+++.+||++-|+.-|
T Consensus 160 ~NKn~~~l~~~~~~~~~~~R~NvlLlGDslgD~~Ma 195 (246)
T PF05822_consen 160 FNKNESALEDSPYFKQLKKRTNVLLLGDSLGDLHMA 195 (246)
T ss_dssp T-HHHHHHTTHHHHHCTTT--EEEEEESSSGGGGTT
T ss_pred eeCCcccccCchHHHHhccCCcEEEecCccCChHhh
Confidence 11122 122 22 467899999999994433
No 307
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=50.11 E-value=1.6e+02 Score=27.13 Aligned_cols=53 Identities=21% Similarity=0.088 Sum_probs=29.2
Q ss_pred HHHHH-cCCcEEEEeccCeeec-CCCcccC--chHHHHHHHHHHhCCC-cEEEEeCCCC
Q 022336 176 AELQR-RGFKGVVFDKDNTLTA-PYSLTLW--GPLSSSIEQCKSVFGH-DIAVFSNSAG 229 (299)
Q Consensus 176 ~~Lk~-~GIRaLVlD~DNTLT~-p~~~~l~--Pgv~e~L~~Lke~fGi-kVaIVSNnaG 229 (299)
+.|++ .||.+|++|.+-.-.. ....... .....+.+.|.+. |. +|+++++..+
T Consensus 132 ~~l~~~~~iPvV~~d~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~-G~~~i~~i~~~~~ 189 (341)
T PRK10703 132 AMLEEYRHIPMVVMDWGEAKADFTDAIIDNAFEGGYLAGRYLIER-GHRDIGVIPGPLE 189 (341)
T ss_pred HHHHhcCCCCEEEEecccCCcCCCCeEEECcHHHHHHHHHHHHHC-CCCcEEEEeCCcc
Confidence 56666 7999999986411000 0111111 2334555666665 65 6888876553
No 308
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=49.61 E-value=1e+02 Score=28.70 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=47.4
Q ss_pred ecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc-cC-CCCHHHHHHHHHHh-C
Q 022336 195 TAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH-RV-KKPAGTAEEIEKHF-G 271 (299)
Q Consensus 195 T~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h-a~-KKP~p~le~alk~l-G 271 (299)
++|......+.+.+..+.+ ...+...+.||-++|-...+.....+..+.+..|++++.| .+ ......++..+..+ .
T Consensus 6 ~Pp~~~~~~~~l~~~~~~~-~~~~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~ 84 (274)
T cd00537 6 FPPKTADGEENLEAAADLL-GALDPDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHA 84 (274)
T ss_pred eCcCCccHHHHHHHHHHHh-hcCCCCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHH
Confidence 3344433333343433333 3224667778877752222223345666777778988776 22 22223343332222 2
Q ss_pred CCCCcEEEE-cCCccc
Q 022336 272 CQSSQLIMV-DMCRIV 286 (299)
Q Consensus 272 i~PeEiamV-GDrl~D 286 (299)
.-..++++| ||....
T Consensus 85 ~Gi~~iL~l~GD~~~~ 100 (274)
T cd00537 85 LGIRNILALRGDPPKG 100 (274)
T ss_pred CCCCeEEEeCCCCCCC
Confidence 347899999 887643
No 309
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=49.35 E-value=1.8e+02 Score=25.49 Aligned_cols=53 Identities=17% Similarity=0.028 Sum_probs=31.1
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
++.+++.|+..|++|.+..-....... -......+.+.|.+. |. ++++++...
T Consensus 71 ~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~-g~~~i~~i~~~~ 126 (268)
T cd06270 71 LIELAAQVPPLVLINRHIPGLADRCIWLDNEQGGYLATEHLIEL-GHRKIACITGPL 126 (268)
T ss_pred HHHHhhCCCCEEEEeccCCCCCCCeEEECcHHHHHHHHHHHHHC-CCceEEEEeCCc
Confidence 567788999999998753100001111 123344555666665 65 688887654
No 310
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=49.07 E-value=2.5e+02 Score=27.68 Aligned_cols=96 Identities=10% Similarity=0.103 Sum_probs=61.3
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
++|+ ..++.|-+++.+|- ++.. ..-.+.+.+..+-+.. + ..++++-... ...++.+.+..++|+
T Consensus 58 ~SFe~A~~~LGg~~i~l~~-~~ss----~~kgEsl~Dtarvls~-y-~D~iviR~~~--------~~~~~~~a~~~~vPV 122 (338)
T PRK02255 58 VSFETAMTQLGGHAQYLAP-GQIQ----LGGHESLEDTARVLSR-L-VDIIMARVDR--------HQTVVELAKYATVPV 122 (338)
T ss_pred HHHHHHHHHcCCeEEEeCc-cccc----CCCCcCHHHHHHHHHH-h-CcEEEEecCC--------hHHHHHHHHhCCCCE
Confidence 5553 44578999999984 4433 1224666777766655 2 4555554433 456777888889998
Q ss_pred EEccCCCCHH--H---HHHHHHHhC----CCCCcEEEEcCC
Q 022336 252 IRHRVKKPAG--T---AEEIEKHFG----CQSSQLIMVDMC 283 (299)
Q Consensus 252 I~ha~KKP~p--~---le~alk~lG----i~PeEiamVGDr 283 (299)
|--....-+| . +..+.+++| ++--.+++|||-
T Consensus 123 INa~~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~ 163 (338)
T PRK02255 123 INGMSDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDA 163 (338)
T ss_pred EECCCCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCC
Confidence 8643333344 2 456667874 666789999994
No 311
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=48.90 E-value=2.5e+02 Score=27.06 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=62.8
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
.+|+ ..++.|-+++.||-..+ - ..-.+.+.+.++-+.. + ..++++-... ...++.+++..++++
T Consensus 59 ~SFe~A~~~LGg~~i~l~~~~s-s----~~kgEsl~Dt~~~l~~-~-~D~iv~R~~~--------~~~~~~~a~~~~vPV 123 (304)
T PRK00779 59 VSFEVGMAQLGGHAIFLSPRDT-Q----LGRGEPIEDTARVLSR-Y-VDAIMIRTFE--------HETLEELAEYSTVPV 123 (304)
T ss_pred HHHHHHHHHcCCcEEEECcccc-c----CCCCcCHHHHHHHHHH-h-CCEEEEcCCC--------hhHHHHHHHhCCCCE
Confidence 4443 44678999999876322 1 1224567777777665 3 5666665443 567888888889998
Q ss_pred EEccCCCCHH--H---HHHHHHHhC-CCCCcEEEEcCC
Q 022336 252 IRHRVKKPAG--T---AEEIEKHFG-CQSSQLIMVDMC 283 (299)
Q Consensus 252 I~ha~KKP~p--~---le~alk~lG-i~PeEiamVGDr 283 (299)
+--+...-+| + +..+.+++| ++.-.+++|||.
T Consensus 124 INag~~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~~vGd~ 161 (304)
T PRK00779 124 INGLTDLSHPCQILADLLTIYEHRGSLKGLKVAWVGDG 161 (304)
T ss_pred EeCCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEeCC
Confidence 8655444445 2 445667777 666789999993
No 312
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=48.68 E-value=93 Score=24.14 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=35.1
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.+.+.|++|+-++=.-+. .--.-+...++++++. |.++.++.=+ ..+..+.+..|+.
T Consensus 37 ~~~~~vilDls~v~~iDs--sgi~~L~~~~~~~~~~-g~~l~l~~~~----------~~v~~~l~~~gl~ 93 (106)
T TIGR02886 37 RPIKHLILNLKNVTFMDS--SGLGVILGRYKKIKNE-GGEVIVCNVS----------PAVKRLFELSGLF 93 (106)
T ss_pred CCCCEEEEECCCCcEecc--hHHHHHHHHHHHHHHc-CCEEEEEeCC----------HHHHHHHHHhCCc
Confidence 567889999888755111 1112223456667776 8887776544 3677777777764
No 313
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=48.55 E-value=1.1e+02 Score=29.80 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=38.3
Q ss_pred HHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.+.|++.|. ++ -++..+.+++.+.++.+++. |+.+.|.||...+. .+.++.+ ...|+.
T Consensus 59 ~~~g~~~v~------~~-GGEPll~~~~~~il~~~~~~-g~~~~i~TNG~ll~-----~~~~~~L-~~~g~~ 116 (378)
T PRK05301 59 RALGALQLH------FS-GGEPLLRKDLEELVAHAREL-GLYTNLITSGVGLT-----EARLAAL-KDAGLD 116 (378)
T ss_pred HHcCCcEEE------EE-CCccCCchhHHHHHHHHHHc-CCcEEEECCCccCC-----HHHHHHH-HHcCCC
Confidence 345665443 45 47777888888999998886 88899999975332 3445444 344544
No 314
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=48.54 E-value=68 Score=26.73 Aligned_cols=46 Identities=26% Similarity=0.279 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHhcCCCC-----cCCcccc--CC---cCCCCHHHHHHcCCcEEEE
Q 022336 143 NVEGIVSSTVVFAKDRHL-----ALPHVTV--PD---IRYIDWAELQRRGFKGVVF 188 (299)
Q Consensus 143 N~~gi~~~~~~~~~~p~l-----l~P~~~v--~s---I~~Id~~~Lk~~GIRaLVl 188 (299)
|..|...+++.+..++.- ++-+.+. .| |.++||+.|.+.+++-++.
T Consensus 4 NP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~~~i~~viv 59 (113)
T PF08353_consen 4 NPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLADPNIKQVIV 59 (113)
T ss_pred CcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhcCCCCEEEE
Confidence 889999999987655421 1111111 12 5678999999888887765
No 315
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=48.38 E-value=97 Score=23.04 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=28.3
Q ss_pred CCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
+.+.|++|..++=. -+.....-+.++.+++++. |..+.++.-+ +.+..+.+..|+.
T Consensus 37 ~~~~viid~~~v~~--iDs~g~~~L~~l~~~~~~~-g~~v~i~~~~----------~~~~~~l~~~gl~ 92 (99)
T cd07043 37 GPRRLVLDLSGVTF--IDSSGLGVLLGAYKRARAA-GGRLVLVNVS----------PAVRRVLELTGLD 92 (99)
T ss_pred CCCEEEEECCCCCE--EcchhHHHHHHHHHHHHHc-CCeEEEEcCC----------HHHHHHHHHhCcc
Confidence 46777777777533 1111222233444555554 6665555432 3455566666653
No 316
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=47.83 E-value=17 Score=28.55 Aligned_cols=93 Identities=23% Similarity=0.348 Sum_probs=54.4
Q ss_pred CCccccCCcC--CCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHH
Q 022336 162 LPHVTVPDIR--YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASK 239 (299)
Q Consensus 162 ~P~~~v~sI~--~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~ 239 (299)
.|++.+.+.. .++++.| .| |.+++-.=.+...+....-.+++.+...++++. |+.++.||... .+.
T Consensus 5 ~P~f~l~~~~g~~~~l~~l--~g-k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~--------~~~ 72 (124)
T PF00578_consen 5 APDFTLTDSDGKTVSLSDL--KG-KPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDD--------PEE 72 (124)
T ss_dssp GGCEEEETTTSEEEEGGGG--TT-SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSS--------HHH
T ss_pred CCCcEeECCCCCEEEHHHH--CC-CcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeeccccc--------ccc
Confidence 6778887765 4667777 45 555554422211012222234455555566665 88999999876 567
Q ss_pred HHHHHHHcCC--cEEEccCCCCHHHHHHHHHHhCCC
Q 022336 240 ARKLEGKIGI--KVIRHRVKKPAGTAEEIEKHFGCQ 273 (299)
Q Consensus 240 a~~~lk~LGI--~vI~ha~KKP~p~le~alk~lGi~ 273 (299)
.+.+.+..++ +++.. +. .++.+.+|+.
T Consensus 73 ~~~~~~~~~~~~~~~~D----~~---~~~~~~~~~~ 101 (124)
T PF00578_consen 73 IKQFLEEYGLPFPVLSD----PD---GELAKAFGIE 101 (124)
T ss_dssp HHHHHHHHTCSSEEEEE----TT---SHHHHHTTCE
T ss_pred hhhhhhhhccccccccC----cc---hHHHHHcCCc
Confidence 7888887765 44443 11 2466777776
No 317
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=47.83 E-value=73 Score=32.17 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=36.8
Q ss_pred eeecCCCcccCchHHHHHHHHHHhCCCcEEEE-eCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 193 TLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVF-SNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 193 TLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIV-SNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
|++..+....+|.+.+.++.+++. |+.++|. ||..|.. +.+.++++.+ +|+.
T Consensus 78 tisGGGepl~~~~l~eLl~~lk~~-gi~taI~~TnG~~l~----~~e~~~~L~~-~gld 130 (404)
T TIGR03278 78 TISGGGDVSCYPELEELTKGLSDL-GLPIHLGYTSGKGFD----DPEIAEFLID-NGVR 130 (404)
T ss_pred EEECCcccccCHHHHHHHHHHHhC-CCCEEEeCCCCcccC----CHHHHHHHHH-cCCC
Confidence 556566777889999999999997 9999996 9976543 2444555444 3443
No 318
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.43 E-value=1.9e+02 Score=25.47 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=32.0
Q ss_pred HHHHHHcCCcEEEEeccCeeecC-CCc--ccCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAP-YSL--TLWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p-~~~--~l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
+..+.+.|+.+|++|.+---... ... .-......+.+.|.+. |. +++++++..
T Consensus 76 i~~~~~~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~-g~~~i~~i~~~~ 132 (273)
T cd06292 76 YERLAERGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVAL-GHRRIGFASGPG 132 (273)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHC-CCceEEEEeCCc
Confidence 46678899999999875211000 111 1234455666777776 76 688887654
No 319
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=46.67 E-value=1.4e+02 Score=23.22 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=40.4
Q ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHH-HHHHHHHHhCCCCCcEEEEcCCc
Q 022336 221 IAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAG-TAEEIEKHFGCQSSQLIMVDMCR 284 (299)
Q Consensus 221 VaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p-~le~alk~lGi~PeEiamVGDrl 284 (299)
.+++|.+. |.+.+..+++.+|+..++-+..|-.. .+.++++.+. +-..+++.=|..
T Consensus 13 ~~lvS~s~-------DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpDGP 69 (74)
T PF04028_consen 13 AALVSRSR-------DGELIARVLERFGFRTIRGSSSRGGARALREMLRALK-EGYSIAITPDGP 69 (74)
T ss_pred EEEEccCc-------CHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCCCC
Confidence 45666655 58899999999999999876545443 4777777776 556777777754
No 320
>PF08814 XisH: XisH protein; InterPro: IPR014919 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 2OKF_A.
Probab=46.46 E-value=5.7 Score=34.56 Aligned_cols=59 Identities=25% Similarity=0.280 Sum_probs=44.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhcCCCCcCCccccCCcCCCCH--HHHHHcCCcEEEEecc
Q 022336 132 SQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDW--AELQRRGFKGVVFDKD 191 (299)
Q Consensus 132 ~~~~~~~~q~~N~~gi~~~~~~~~~~p~ll~P~~~v~sI~~Id~--~~Lk~~GIRaLVlD~D 191 (299)
.|+..|+||-+|...++.-.-- -|.-=|++|...+.+++.-++ ..+++..++.||+|..
T Consensus 69 ~df~~AlGQ~~~Yr~~L~~~eP-eR~LYLAV~~~iY~~fF~~~~~q~~i~~~qikLIVfd~~ 129 (135)
T PF08814_consen 69 SDFHTALGQFLNYRLALERTEP-ERKLYLAVPDDIYESFFQEPFIQLLIERYQIKLIVFDPE 129 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-T-TEEEEEEEEHHHHHTGGGSHHHHHHHHHTT--EEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhhcCC-CceEEEEEcHHHHHHHHHhHHHHHHHHhcCceEEEECCC
Confidence 6899999999999887764331 233346789999999999887 4567889999999965
No 321
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=46.10 E-value=1.3e+02 Score=27.84 Aligned_cols=95 Identities=22% Similarity=0.312 Sum_probs=57.8
Q ss_pred cCCcCCCCHH-------HHHHcCCcEEEEec-cCeeecCCCcccCchHHHHHHHH-HHhCCCcEEEEeCCCCCCCCCccH
Q 022336 167 VPDIRYIDWA-------ELQRRGFKGVVFDK-DNTLTAPYSLTLWGPLSSSIEQC-KSVFGHDIAVFSNSAGLYEYDNDA 237 (299)
Q Consensus 167 v~sI~~Id~~-------~Lk~~GIRaLVlD~-DNTLT~p~~~~l~Pgv~e~L~~L-ke~fGikVaIVSNnaGs~~~d~~~ 237 (299)
.+||...|+. .|.+.|+..+-+|+ ||..+ |+ ..+.|...+++++. -.. .+.+=+...++ .
T Consensus 7 ~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FV-PN-~tfg~~~i~~lr~~~~~~-~~dvHLMv~~P--------~ 75 (223)
T PRK08745 7 APSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYV-PN-LTIGPMVCQALRKHGITA-PIDVHLMVEPV--------D 75 (223)
T ss_pred EeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccC-CC-cccCHHHHHHHHhhCCCC-CEEEEeccCCH--------H
Confidence 4566666654 45568999999996 99999 44 56778887777764 232 45666776666 4
Q ss_pred HHHHHHHHHcCCcEE-EccCCCCHH-HHHHHHHHhCCC
Q 022336 238 SKARKLEGKIGIKVI-RHRVKKPAG-TAEEIEKHFGCQ 273 (299)
Q Consensus 238 e~a~~~lk~LGI~vI-~ha~KKP~p-~le~alk~lGi~ 273 (299)
..++.+.+ .|...+ .|....+.+ ...+.++..|++
T Consensus 76 ~~i~~~~~-~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k 112 (223)
T PRK08745 76 RIVPDFAD-AGATTISFHPEASRHVHRTIQLIKSHGCQ 112 (223)
T ss_pred HHHHHHHH-hCCCEEEEcccCcccHHHHHHHHHHCCCc
Confidence 45555444 365543 443322333 244555666653
No 322
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=45.98 E-value=1.1e+02 Score=29.04 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=48.9
Q ss_pred CCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc-cC-CCCHHHHHHHH---HHhC
Q 022336 197 PYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH-RV-KKPAGTAEEIE---KHFG 271 (299)
Q Consensus 197 p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h-a~-KKP~p~le~al---k~lG 271 (299)
|....-.+.+.+.++.+.+. +-..+=||.++|-+..+.....+..+.+++|++++.| .+ ......++..+ ..+|
T Consensus 9 Pk~~~~~~~~~~~~~~l~~~-~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~G 87 (281)
T TIGR00677 9 PKTEEGVQNLYERMDRMVAS-GPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNG 87 (281)
T ss_pred CCCchHHHHHHHHHHHHhhC-CCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCC
Confidence 44333344556667777663 5666777777744433444456677777889988876 22 22223444333 3345
Q ss_pred CCCCcE-EEEcCCc
Q 022336 272 CQSSQL-IMVDMCR 284 (299)
Q Consensus 272 i~PeEi-amVGDrl 284 (299)
..++ ++-||..
T Consensus 88 --i~niLal~GD~p 99 (281)
T TIGR00677 88 --IQNILALRGDPP 99 (281)
T ss_pred --CCEEEEECCCCC
Confidence 5676 6668875
No 323
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=45.97 E-value=1.5e+02 Score=26.80 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=41.4
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHH
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEG 245 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk 245 (299)
++|+++|... .+=++.++.. +.+...+.++-.. +..++|.|+..|.+..|...+.++.+.+
T Consensus 34 ~~L~~ag~~~----~~~~iV~D~~----~~I~~~l~~~~~~-~~DvvlttGGTG~t~RDvTpEA~~~~~d 94 (169)
T COG0521 34 ELLEEAGHNV----AAYTIVPDDK----EQIRATLIALIDE-DVDVVLTTGGTGITPRDVTPEATRPLFD 94 (169)
T ss_pred HHHHHcCCcc----ceEEEeCCCH----HHHHHHHHHHhcC-CCCEEEEcCCccCCCCcCCHHHHHHHHh
Confidence 6778888885 4556663333 3344455555443 3689999999999888888887777655
No 324
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.62 E-value=2.1e+02 Score=25.12 Aligned_cols=50 Identities=18% Similarity=0.053 Sum_probs=29.0
Q ss_pred HHHHHcCCcEEEEecc--CeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 176 AELQRRGFKGVVFDKD--NTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~D--NTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
..+.+.|+.+|++|.+ +.-. .... -........+.|.+. |. +++++++..
T Consensus 72 ~~~~~~~~pvV~i~~~~~~~~~--~~V~~d~~~~~~~~~~~L~~~-G~~~i~~i~~~~ 126 (269)
T cd06293 72 AKLINSYGNIVLVDEDVPGAKV--PKVFCDNEQGGRLATRHLARA-GHRRIAFVGGPD 126 (269)
T ss_pred HHHHhcCCCEEEECCCCCCCCC--CEEEECCHHHHHHHHHHHHHC-CCceEEEEecCc
Confidence 4556678999999864 2111 1111 223445566667775 66 688887654
No 325
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=45.43 E-value=1.3e+02 Score=22.57 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=37.7
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVF-GHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~f-GikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
+.++...+..+++|.+-.= -...+.++++++.. +.+++++|+.. +....... -..|+..+.
T Consensus 37 ~~~~~~~~d~iiid~~~~~---------~~~~~~~~~i~~~~~~~~ii~~t~~~-------~~~~~~~~-~~~g~~~~l 98 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLELPD---------GDGLELLEQIRQINPSIPIIVVTDED-------DSDEVQEA-LRAGADDYL 98 (112)
T ss_dssp HHHHHSTESEEEEESSSSS---------SBHHHHHHHHHHHTTTSEEEEEESST-------SHHHHHHH-HHTTESEEE
T ss_pred HHhcccCceEEEEEeeecc---------ccccccccccccccccccEEEecCCC-------CHHHHHHH-HHCCCCEEE
Confidence 5667788999999953211 23456667766652 46899999876 12333333 377875443
No 326
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=45.10 E-value=63 Score=32.85 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=36.7
Q ss_pred HHHHcCCcEE-EEec---cCeeecCCCcccCc-hHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 177 ELQRRGFKGV-VFDK---DNTLTAPYSLTLWG-PLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 177 ~Lk~~GIRaL-VlD~---DNTLT~p~~~~l~P-gv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
.|.+.|++++ ++|. ||-|.+.+...... .-.+-|+++.++ ...|++..- .| ...++.+++++|+++
T Consensus 190 lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~gg~tleei~~~~~A-~lniv~~~~-~g-------~~~A~~Lee~~giP~ 260 (461)
T TIGR02931 190 LLEEMDIEANVLFEIESFDSPLMPDKSAVSHGSTTIEDLTDTANA-KGTIALNRY-EG-------MKAADYLQKKFDVPA 260 (461)
T ss_pred HHHHcCCceEEeeccccccCCCCCcccccCCCCCcHHHHHhhccC-cEEEEEcHh-hH-------HHHHHHHHHHhCCCe
Confidence 4567899985 6775 44444222111121 223445555443 233333322 22 567888888999987
Q ss_pred EE
Q 022336 252 IR 253 (299)
Q Consensus 252 I~ 253 (299)
+.
T Consensus 261 ~~ 262 (461)
T TIGR02931 261 II 262 (461)
T ss_pred ec
Confidence 74
No 327
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=44.93 E-value=1.9e+02 Score=26.71 Aligned_cols=94 Identities=14% Similarity=0.262 Sum_probs=56.9
Q ss_pred HHHhccCCCHHHHHHHHHHHhcCCCCcCC-cc--ccCCcCCC--C--HHHHHHcCCcEEEE-eccCeeecCCCcccCchH
Q 022336 135 KAALGQRINVEGIVSSTVVFAKDRHLALP-HV--TVPDIRYI--D--WAELQRRGFKGVVF-DKDNTLTAPYSLTLWGPL 206 (299)
Q Consensus 135 ~~~~~q~~N~~gi~~~~~~~~~~p~ll~P-~~--~v~sI~~I--d--~~~Lk~~GIRaLVl-D~DNTLT~p~~~~l~Pgv 206 (299)
.+++.+.+|+.-....++.+ |+-. =.| ++ |++.++.. + .+.+++.|+.+|++ |+ +.++.
T Consensus 52 ~~al~~g~~~~~~~~~~~~v-r~~~-~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl-----------~~ee~ 118 (242)
T cd04724 52 ERALANGVTLKDVLELVKEI-RKKN-TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL-----------PPEEA 118 (242)
T ss_pred HHHHHcCCCHHHHHHHHHHH-hhcC-CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC-----------CHHHH
Confidence 67888999999988888864 4322 234 44 33444443 2 35677899987776 43 12456
Q ss_pred HHHHHHHHHhCCCcEEE-EeCCCCCCCCCccHHHHHHHHH-HcCC
Q 022336 207 SSSIEQCKSVFGHDIAV-FSNSAGLYEYDNDASKARKLEG-KIGI 249 (299)
Q Consensus 207 ~e~L~~Lke~fGikVaI-VSNnaGs~~~d~~~e~a~~~lk-~LGI 249 (299)
.+.++.+++. |++.++ ++-+. ..++++.+.+ ..|.
T Consensus 119 ~~~~~~~~~~-g~~~i~~i~P~T-------~~~~i~~i~~~~~~~ 155 (242)
T cd04724 119 EEFREAAKEY-GLDLIFLVAPTT-------PDERIKKIAELASGF 155 (242)
T ss_pred HHHHHHHHHc-CCcEEEEeCCCC-------CHHHHHHHHhhCCCC
Confidence 6777777775 776544 43322 2456666666 4443
No 328
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=44.85 E-value=48 Score=29.33 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=38.2
Q ss_pred cCCCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEE
Q 022336 170 IRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVF 224 (299)
Q Consensus 170 I~~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIV 224 (299)
|...||..+++.|++.+++=. | .+.....|....-++.++++ |+++++.
T Consensus 13 i~~~dw~~vk~~Gi~faiika----t-eG~~~~D~~~~~n~~~A~~a-Gl~vG~Y 61 (192)
T cd06522 13 MSVADYNKLKNYGVKAVIVKL----T-EGTTYRNPYAASQIANAKAA-GLKVSAY 61 (192)
T ss_pred ccHHHHHHHHHcCCCEEEEEE----c-CCCCccChHHHHHHHHHHHC-CCeeEEE
Confidence 334489999999999888865 4 45556788888999999997 9987653
No 329
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=44.67 E-value=1.2e+02 Score=31.02 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHh----CCCCCcEEEEcCCcc
Q 022336 259 PAGTAEEIEKHF----GCQSSQLIMVDMCRI 285 (299)
Q Consensus 259 P~p~le~alk~l----Gi~PeEiamVGDrl~ 285 (299)
..-|+..+.+.| +++++|++.||||..
T Consensus 350 Ks~GV~~lQ~y~~~~~~i~~~~tLHVGDQF~ 380 (408)
T PF06437_consen 350 KSLGVRALQKYFDPEGGIKPSETLHVGDQFL 380 (408)
T ss_pred cHHhHHHHHHHHHhccCCCccceeeehhhhh
Confidence 334567777788 899999999999865
No 330
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=44.66 E-value=3.4e+02 Score=27.21 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=18.4
Q ss_pred ccccCCcCCCCHHHH---HHcCCcEEEEeccCe
Q 022336 164 HVTVPDIRYIDWAEL---QRRGFKGVVFDKDNT 193 (299)
Q Consensus 164 ~~~v~sI~~Id~~~L---k~~GIRaLVlD~DNT 193 (299)
++|+..=+.+..+.+ ++.|+++|++++|=.
T Consensus 138 QlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 138 QFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 444433333443333 467999999999943
No 331
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=44.61 E-value=20 Score=27.32 Aligned_cols=25 Identities=8% Similarity=0.163 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl~D 286 (299)
++.++++..|+++.+++.|||-.++
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~~eFe 68 (69)
T TIGR03595 44 GVEDALRKAGAKDGDTVRIGDFEFE 68 (69)
T ss_pred CHHHHHHHcCCCCCCEEEEccEEEe
Confidence 4788999999999999999997654
No 332
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=44.08 E-value=1.2e+02 Score=25.07 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=41.3
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHhC--CCcEEEEeCCCCCCCCC-ccHHHHHHHHHHcCCcEEEccCCCC
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVF--GHDIAVFSNSAGLYEYD-NDASKARKLEGKIGIKVIRHRVKKP 259 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~f--GikVaIVSNnaGs~~~d-~~~e~a~~~lk~LGI~vI~ha~KKP 259 (299)
.+++|+++.= -...+..|++++++.. +.+++||.|+..+.... ...+.+..+.+.++.+++.-+.+..
T Consensus 77 i~v~d~~~~~-------sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 147 (161)
T cd04117 77 FLVYDISSER-------SYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTN 147 (161)
T ss_pred EEEEECCCHH-------HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 3666665421 1234566777665432 46899999998543211 2345677778888887766555554
No 333
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=43.64 E-value=1.1e+02 Score=23.58 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=34.0
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.+.+.|++|+.++=.- + ...-.-+.++.+++++. |..+.++.-+ +.+..+.+..|+.
T Consensus 41 ~~~~~vvidls~v~~i-D-ssgl~~L~~~~~~~~~~-~~~~~l~~~~----------~~~~~~l~~~~l~ 97 (108)
T TIGR00377 41 TGPRPIVLDLEDLEFM-D-SSGLGVLLGRYKQVRRV-GGQLVLVSVS----------PRVARLLDITGLL 97 (108)
T ss_pred cCCCeEEEECCCCeEE-c-cccHHHHHHHHHHHHhc-CCEEEEEeCC----------HHHHHHHHHhChh
Confidence 4788888988877541 1 12223334555566665 7776666544 3566666676664
No 334
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.27 E-value=52 Score=31.31 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=26.0
Q ss_pred cEEEEecc-----CeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCC
Q 022336 184 KGVVFDKD-----NTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (299)
Q Consensus 184 RaLVlD~D-----NTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNn 227 (299)
.+|++|.| |..+ .+ ..-.|...+.++++++. |+++++.-+-
T Consensus 47 d~i~iD~~w~~~~g~f~-~d-~~~FPdp~~mi~~l~~~-G~k~~l~i~P 92 (303)
T cd06592 47 GQIEIDDNWETCYGDFD-FD-PTKFPDPKGMIDQLHDL-GFRVTLWVHP 92 (303)
T ss_pred CeEEeCCCccccCCccc-cC-hhhCCCHHHHHHHHHHC-CCeEEEEECC
Confidence 35555543 4555 22 22346678888999887 9988776553
No 335
>PLN02342 ornithine carbamoyltransferase
Probab=42.99 E-value=3.5e+02 Score=26.88 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=64.1
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
++|+ ..++.|-.++.+|-+.+=. .-.+.+.+..+-+.. + ..++++-... ...++.+++..++++
T Consensus 101 ~SFE~A~~~LGg~~i~l~~~~ss~-----~kGESl~DTarvLs~-y-~D~IviR~~~--------~~~~~~la~~~~vPV 165 (348)
T PLN02342 101 VSFETGFFLLGGHALYLGPDDIQL-----GKREETRDIARVLSR-Y-NDIIMARVFA--------HQDVLDLAEYSSVPV 165 (348)
T ss_pred HHHHHHHHHcCCcEEEeCcccccC-----CCCcCHHHHHHHHHH-h-CCEEEEeCCC--------hHHHHHHHHhCCCCE
Confidence 5553 4467899999997765322 223567777777666 3 5666665443 567788888889998
Q ss_pred EEccCCCCHH--H---HHHHHHHhC-CCCCcEEEEcCCcc
Q 022336 252 IRHRVKKPAG--T---AEEIEKHFG-CQSSQLIMVDMCRI 285 (299)
Q Consensus 252 I~ha~KKP~p--~---le~alk~lG-i~PeEiamVGDrl~ 285 (299)
|--....-+| . +..+.+++| ++--.+++|||..+
T Consensus 166 INA~~~~~HPtQaLaDl~Ti~e~~G~l~glkva~vGD~~n 205 (348)
T PLN02342 166 INGLTDYNHPCQIMADALTIIEHIGRLEGTKVVYVGDGNN 205 (348)
T ss_pred EECCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCch
Confidence 8643333344 2 456667777 56678999999543
No 336
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=42.92 E-value=55 Score=29.76 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=56.0
Q ss_pred CCcCCCCH-------HHHHHcCCcEEEEec-cCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHH
Q 022336 168 PDIRYIDW-------AELQRRGFKGVVFDK-DNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASK 239 (299)
Q Consensus 168 ~sI~~Id~-------~~Lk~~GIRaLVlD~-DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~ 239 (299)
+||...|+ +.|.+.|+..+-+|+ ||+.+ |+ ..+.|...+.+++.-. ..+.+=++..++ ...
T Consensus 4 pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fv-pn-~~~g~~~i~~i~~~~~-~~~DvHLMv~~P--------~~~ 72 (201)
T PF00834_consen 4 PSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFV-PN-LTFGPDIIKAIRKITD-LPLDVHLMVENP--------ERY 72 (201)
T ss_dssp EBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSS-SS-B-B-HHHHHHHHTTSS-SEEEEEEESSSG--------GGH
T ss_pred hhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccC-Cc-ccCCHHHHHHHhhcCC-CcEEEEeeeccH--------HHH
Confidence 45555555 455678999999996 99999 44 5677888777766532 245688888887 445
Q ss_pred HHHHHHHcCCcEE-EccCCCCHH-HHHHHHHHhCCCC
Q 022336 240 ARKLEGKIGIKVI-RHRVKKPAG-TAEEIEKHFGCQS 274 (299)
Q Consensus 240 a~~~lk~LGI~vI-~ha~KKP~p-~le~alk~lGi~P 274 (299)
++.+ ...|...+ .|..-.+.+ .+.+.++..|+++
T Consensus 73 i~~~-~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~ 108 (201)
T PF00834_consen 73 IEEF-AEAGADYITFHAEATEDPKETIKYIKEAGIKA 108 (201)
T ss_dssp HHHH-HHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEE
T ss_pred HHHH-HhcCCCEEEEcccchhCHHHHHHHHHHhCCCE
Confidence 5554 34465543 443222332 3456667777643
No 337
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=42.75 E-value=17 Score=33.38 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=21.8
Q ss_pred CcEEEEeccCeeecCC--CcccCchHHHHHHHHH
Q 022336 183 FKGVVFDKDNTLTAPY--SLTLWGPLSSSIEQCK 214 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~--~~~l~Pgv~e~L~~Lk 214 (299)
||+|+||+.||+++-. ...+.|-+.+++..+.
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l 34 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFV 34 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHH
Confidence 6899999999999533 1235566666666543
No 338
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=42.37 E-value=2e+02 Score=26.40 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=30.7
Q ss_pred CHHHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeC
Q 022336 174 DWAELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSN 226 (299)
Q Consensus 174 d~~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSN 226 (299)
+.+.|...++..|++|.|.--. ..+. -..+...+.+.|.+. |. +|++++.
T Consensus 128 ~~~~l~~~~~p~V~i~~~~~~~--~~V~~D~~~~~~~a~~~L~~~-Ghr~I~~i~~ 180 (311)
T TIGR02405 128 DEEILESWNHKAVVIARDTGGF--SSVCYDDYGAIELLMANLYQQ-GHRHISFLGV 180 (311)
T ss_pred CHHHHHhcCCCEEEEecCCCCc--cEEEeCcHHHHHHHHHHHHHc-CCCcEEEEcc
Confidence 3445667788899998753101 1111 224556677778886 77 5888864
No 339
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=42.37 E-value=1.1e+02 Score=26.85 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=46.3
Q ss_pred CCCHHH----HHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHc
Q 022336 172 YIDWAE----LQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI 247 (299)
Q Consensus 172 ~Id~~~----Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~L 247 (299)
.|||.. +++.||..+++=. | .+.....+....-++.++++ |+++++.--..... + ..+.++.+.+.+
T Consensus 11 ~i~~~~~~~~~k~~gi~fviika----t-eG~~~~D~~~~~n~~~a~~a-Gl~~G~Yhf~~~~~--~-a~~qA~~f~~~~ 81 (194)
T cd06524 11 KIDWQKVKAKVKDSPVAFVFIKA----T-EGVDIVDPDFPTNWEGAKEA-GIIRGAYHFYRPNS--D-PKQQADNFLNTV 81 (194)
T ss_pred CCChhhhhhhhhhcCccEEEEEe----c-CCCCccChHHHHHHHHHHHc-CCceEEEEEeecCC--C-HHHHHHHHHHHc
Confidence 589998 8899999888865 4 45556788889999999997 99988652211000 1 145677777655
No 340
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=42.11 E-value=46 Score=30.14 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=29.6
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
..+|+||+++|+- .+...-..++.+.++++++. |.+|+...+..
T Consensus 45 ~~ik~vvL~~~s~---gg~~~~~~el~~~i~~~~~~-~kpVia~~~~~ 88 (222)
T cd07018 45 DRIKGIVLDLDGL---SGGLAKLEELRQALERFRAS-GKPVIAYADGY 88 (222)
T ss_pred CCeEEEEEECCCC---CCCHHHHHHHHHHHHHHHHh-CCeEEEEeCCC
Confidence 4799999999872 23333345667788888775 77766555544
No 341
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=41.78 E-value=3.3e+02 Score=26.28 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=62.4
Q ss_pred CCHH-HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcE
Q 022336 173 IDWA-ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~v 251 (299)
++|+ ..++.|-.++.+|...+ . ..-.+.+.+..+-+.. + ..++++-... ...++.+.+..++++
T Consensus 54 ~SFE~A~~~LGg~~i~l~~~~s-s----~~kgEsl~Dt~~vls~-y-~D~iviR~~~--------~~~~~~~a~~~~vPV 118 (302)
T PRK14805 54 VSFDIGINKLGGHCLYLDQQNG-A----LGKRESVADFAANLSC-W-ADAIVARVFS--------HSTIEQLAEHGSVPV 118 (302)
T ss_pred HHHHHHHHHcCCcEEECCCCcC-c----CCCCcCHHHHHHHHHH-h-CCEEEEeCCC--------hhHHHHHHHhCCCCE
Confidence 4453 44678999999885432 2 1224666777776665 3 5666665443 567888888889998
Q ss_pred EEccCCCCHH--H---HHHHHHHhC-CCCCcEEEEcCC
Q 022336 252 IRHRVKKPAG--T---AEEIEKHFG-CQSSQLIMVDMC 283 (299)
Q Consensus 252 I~ha~KKP~p--~---le~alk~lG-i~PeEiamVGDr 283 (299)
+--....-+| . +..+.+++| ++--.+++|||.
T Consensus 119 INa~~~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~ 156 (302)
T PRK14805 119 INALCDLYHPCQALADFLTLAEQFGDVSKVKLAYVGDG 156 (302)
T ss_pred EECCCCCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCC
Confidence 8654444445 2 445667776 555679999994
No 342
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=41.73 E-value=2.1e+02 Score=27.42 Aligned_cols=54 Identities=20% Similarity=0.152 Sum_probs=35.4
Q ss_pred CHHHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 174 DWAELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 174 d~~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
..+.|.+.|+..|++|..-.--....+. -..+..++.+.|.+. |. ++++++...
T Consensus 129 ~~~~l~~~~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~-G~~~i~~i~~~~ 185 (333)
T COG1609 129 LLELLAAAGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIEL-GHRRIAFIGGPL 185 (333)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCCCEEEEChHHHHHHHHHHHHHC-CCceEEEEeCCC
Confidence 3467888899999999843311011111 234667778888886 76 599999874
No 343
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=41.55 E-value=1.3e+02 Score=26.36 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHh-CCCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCC
Q 022336 204 GPLSSSIEQCKSV-FGHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVK 257 (299)
Q Consensus 204 Pgv~e~L~~Lke~-fGikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~K 257 (299)
..+..|++++++. -+.+++||-|+..+.. .....+.++.+++..+++++.-+.+
T Consensus 95 ~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk 150 (189)
T cd04121 95 DGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPL 150 (189)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCC
Confidence 4556777777653 2578999999985531 1223567888888888877765443
No 344
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=41.51 E-value=14 Score=27.20 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCCCcE
Q 022336 238 SKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQL 277 (299)
Q Consensus 238 e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~PeEi 277 (299)
.++..+.+++||+++-++. +| +.++++..|++++++
T Consensus 13 p~~a~vf~~~gIDfCCgG~-~~---L~eA~~~~~ld~~~v 48 (56)
T PF04405_consen 13 PRAARVFRKYGIDFCCGGN-RS---LEEACEEKGLDPEEV 48 (56)
T ss_pred hHHHHHHHHcCCcccCCCC-ch---HHHHHHHcCCCHHHH
Confidence 4567788999999987763 43 778889999988764
No 345
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.06 E-value=2e+02 Score=25.13 Aligned_cols=54 Identities=24% Similarity=0.302 Sum_probs=32.3
Q ss_pred HHHHHHcCCcEEEEeccCee-ecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTL-TAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSAG 229 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTL-T~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNnaG 229 (299)
.+.+++.|+.+|++|.+..- ..-.... -......+.+.+.+. |. +++++++..+
T Consensus 71 ~~~~~~~~ipvV~i~~~~~~~~~~~~v~~d~~~~~~~a~~~l~~~-g~~~i~~i~~~~~ 128 (270)
T cd06296 71 RAALRRTGIPFVVVDPAGDPDADVPSVGATNWAGGLAATEHLLEL-GHRRIGFITGPPD 128 (270)
T ss_pred HHHHhcCCCCEEEEecccCCCCCCCEEEeCcHHHHHHHHHHHHHc-CCCcEEEEcCCCc
Confidence 56777889999999976321 0001111 123445556667665 65 7999987653
No 346
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=40.87 E-value=1.5e+02 Score=27.93 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=48.4
Q ss_pred CcEEEEeccCeeecCCC--cccCc-hHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCC
Q 022336 183 FKGVVFDKDNTLTAPYS--LTLWG-PLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKP 259 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~--~~l~P-gv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP 259 (299)
.+.|+-+.|..|..-.. ..+.+ .+..++..+... +++++||=|+..+... ............+|.+++.-+.+++
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~-~ip~iIVlNK~DL~~~-~~~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA-GIEPVIVLTKADLLDD-EEEELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc-CCCEEEEEEHHHCCCh-HHHHHHHHHHHhCCCeEEEEECCCC
Confidence 45566666665442111 11122 334566666664 8899999999844211 0001112223346776665554454
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcC
Q 022336 260 AGTAEEIEKHFGCQSSQLIMVDM 282 (299)
Q Consensus 260 ~p~le~alk~lGi~PeEiamVGD 282 (299)
. +++++...+ ...-++++|-
T Consensus 150 ~-gi~~L~~~L--~~k~~~~~G~ 169 (287)
T cd01854 150 E-GLDELREYL--KGKTSVLVGQ 169 (287)
T ss_pred c-cHHHHHhhh--ccceEEEECC
Confidence 3 344444433 2466788885
No 347
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=40.86 E-value=93 Score=24.85 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHh---CCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCC
Q 022336 205 PLSSSIEQCKSV---FGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVK 257 (299)
Q Consensus 205 gv~e~L~~Lke~---fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~K 257 (299)
.+..++.++.+. .+.+++||-|+............+..+.+.++++++.-+.+
T Consensus 90 ~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (162)
T cd04138 90 DIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAK 145 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCC
Confidence 344455544431 26789999999854321222345666777788876655443
No 348
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=40.60 E-value=1.3e+02 Score=24.88 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHhC---CCcEEEEeCCCCCCCC-CccHHHHHHHHHHcCCcEEEccCCCC
Q 022336 204 GPLSSSIEQCKSVF---GHDIAVFSNSAGLYEY-DNDASKARKLEGKIGIKVIRHRVKKP 259 (299)
Q Consensus 204 Pgv~e~L~~Lke~f---GikVaIVSNnaGs~~~-d~~~e~a~~~lk~LGI~vI~ha~KKP 259 (299)
..+.+|+.++++.. +.+++||-|+..+... ....+.+..+++.++++++.-+.+..
T Consensus 103 ~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 103 LNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 34566777665531 4679999999854321 12345678888888988776555444
No 349
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=40.41 E-value=1.6e+02 Score=25.16 Aligned_cols=70 Identities=13% Similarity=0.167 Sum_probs=41.4
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhC--CCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCCC
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVF--GHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKKP 259 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~f--GikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KKP 259 (299)
+=++++|.++- .-...+..|+..+.+.. +++++||-|+..+.. .....+.++.+.+.++++++.-+.+..
T Consensus 76 ~~i~v~D~~~~-------~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~ 148 (191)
T cd04112 76 ALLLLYDITNK-------ASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTG 148 (191)
T ss_pred EEEEEEECCCH-------HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 34677776542 11234555666665532 568999999985421 111235667777888887776554443
No 350
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=40.39 E-value=53 Score=33.60 Aligned_cols=27 Identities=4% Similarity=0.047 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCCCcEEEEcCCccc-ccc
Q 022336 263 AEEIEKHFGCQSSQLIMVDMCRIV-IFP 289 (299)
Q Consensus 263 le~alk~lGi~PeEiamVGDrl~D-I~g 289 (299)
...+.+.+++.-.+++||||.+++ |.-
T Consensus 293 ~~~~~~~l~~~g~diLy~gdHi~~dvl~ 320 (424)
T KOG2469|consen 293 LKTVETSMKVKGKDILYGGDHIWGDVLV 320 (424)
T ss_pred HHHHHHHhcccccceeecccceeeeEEe
Confidence 567778888888999999999988 543
No 351
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.10 E-value=1.5e+02 Score=26.30 Aligned_cols=95 Identities=18% Similarity=0.246 Sum_probs=53.3
Q ss_pred cCCccccCCcCC--CCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHH
Q 022336 161 ALPHVTVPDIRY--IDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDAS 238 (299)
Q Consensus 161 l~P~~~v~sI~~--Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e 238 (299)
-.|++..++... |.+..++.+.+=..++=+|+| |+-..=.-+..+.+.++.+. |..|+=||-.+ ..
T Consensus 9 ~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~T---pgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds--------~~ 76 (157)
T COG1225 9 KAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFT---PGCTTEACDFRDLLEEFEKL-GAVVLGISPDS--------PK 76 (157)
T ss_pred cCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCC---CcchHHHHHHHHHHHHHHhC-CCEEEEEeCCC--------HH
Confidence 357777766555 666666444222222233333 11111111234556677776 88888888776 67
Q ss_pred HHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCC
Q 022336 239 KARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGC 272 (299)
Q Consensus 239 ~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi 272 (299)
.-+++.++.|+++-..+.... ++++.+|+
T Consensus 77 ~~~~F~~k~~L~f~LLSD~~~-----~v~~~ygv 105 (157)
T COG1225 77 SHKKFAEKHGLTFPLLSDEDG-----EVAEAYGV 105 (157)
T ss_pred HHHHHHHHhCCCceeeECCcH-----HHHHHhCc
Confidence 788899999887543332221 35666665
No 352
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=39.98 E-value=91 Score=25.05 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCccccCCcCC--CCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHH
Q 022336 162 LPHVTVPDIRY--IDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASK 239 (299)
Q Consensus 162 ~P~~~v~sI~~--Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~ 239 (299)
.|++.++++.. +++..++..+ ++||+-.=++-+ +....-.+.+.+..+++++. |+.++.||... .+.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~-~~vl~f~~~~~C-p~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~--------~~~ 70 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEG-PVVVVFYRGFGC-PFCREYLRALSKLLPELDAL-GVELVAVGPES--------PEK 70 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCC-CEEEEEECCCCC-hhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCC--------HHH
Confidence 46777776654 5565554333 445544433333 22223335555555666655 88887777554 344
Q ss_pred HHHHHHHcCCc
Q 022336 240 ARKLEGKIGIK 250 (299)
Q Consensus 240 a~~~lk~LGI~ 250 (299)
+..+.+..+++
T Consensus 71 ~~~~~~~~~~~ 81 (149)
T cd02970 71 LEAFDKGKFLP 81 (149)
T ss_pred HHHHHHhcCCC
Confidence 44566666654
No 353
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=39.93 E-value=18 Score=38.07 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=33.2
Q ss_pred HcCCcEEEEeccCeeecCC-CcccCchHHHHHHHHHHhCCCcEEEEeCCCC
Q 022336 180 RRGFKGVVFDKDNTLTAPY-SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~-~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaG 229 (299)
+..||+|++|+|+- ++ ...-.+++.++|+++|+. |.+|+......+
T Consensus 91 D~~IkgIvL~i~~~---~g~~~~~~~ei~~ai~~fk~s-gKpVvA~~~~~~ 137 (584)
T TIGR00705 91 DRRIEGLVFDLSNF---SGWDSPHLVEIGSALSEFKDS-GKPVYAYGTNYS 137 (584)
T ss_pred CCCceEEEEEccCC---CCCCHHHHHHHHHHHHHHHhc-CCeEEEEEcccc
Confidence 46899999999952 12 222346788999999886 888877766653
No 354
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=39.81 E-value=1.6e+02 Score=25.30 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.2
Q ss_pred eecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 194 LTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 194 LT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
++ -++..+.+++.+.++.+++. |+.+.|.||..
T Consensus 68 ~s-GGEPll~~~l~~li~~~~~~-g~~v~i~TNg~ 100 (191)
T TIGR02495 68 IT-GGEPTLQAGLPDFLRKVREL-GFEVKLDTNGS 100 (191)
T ss_pred EE-CCcccCcHhHHHHHHHHHHC-CCeEEEEeCCC
Confidence 44 46777778888999999886 99999999975
No 355
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=39.75 E-value=2.2e+02 Score=30.54 Aligned_cols=116 Identities=19% Similarity=0.272 Sum_probs=70.8
Q ss_pred CCcCCCCHHHHHHcCCcEEEEeccCeeecCCCcccCch---------------------HHHHHHHHHHhCCCcEEEEeC
Q 022336 168 PDIRYIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGP---------------------LSSSIEQCKSVFGHDIAVFSN 226 (299)
Q Consensus 168 ~sI~~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pg---------------------v~e~L~~Lke~fGikVaIVSN 226 (299)
|-+++-+|-.|.+.|+=+=|- .--+.. |-..+++.+ +-++|-+..++-|.+|+|+|-
T Consensus 474 PKlYEAnWmdL~~kGhIA~Vq-CaEVWC-pMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsD 551 (776)
T KOG1123|consen 474 PKLYEANWMDLQKKGHIAKVQ-CAEVWC-PMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSD 551 (776)
T ss_pred chhhhccHHHHHhCCceeEEe-eeeeec-CCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEec
Confidence 346777888898888754331 111122 222222221 122333344444889999998
Q ss_pred CCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCC-CcEEE---EcCCcccccccceeeee
Q 022336 227 SAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQS-SQLIM---VDMCRIVIFPGPVVIFL 296 (299)
Q Consensus 227 naGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~P-eEiam---VGDrl~DI~gAn~~~~~ 296 (299)
+. -..+.-+-++|-++++.. -+...-.+|++.|...| =+++| |||.-+|+--||.+|..
T Consensus 552 nv---------fALk~YAikl~KpfIYG~--Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQI 614 (776)
T KOG1123|consen 552 NV---------FALKEYAIKLGKPFIYGP--TSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQI 614 (776)
T ss_pred cH---------HHHHHHHHHcCCceEECC--CchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEE
Confidence 85 334555566787888754 23333457888887755 35555 79999999999999864
No 356
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=39.72 E-value=1.6e+02 Score=23.68 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=41.9
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCC--CcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFG--HDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVK 257 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fG--ikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~K 257 (299)
..+=.+|||.++ ..-...+..++..+++..+ .+++++-|+..... .....+.+..+.+..++.++.-+.+
T Consensus 73 ~~~ii~v~d~~~-------~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (161)
T cd01861 73 SSVAVVVYDITN-------RQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAK 145 (161)
T ss_pred CCEEEEEEECcC-------HHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCC
Confidence 344467777653 1112455667777665445 78999999985421 1123345666677778776655544
Q ss_pred CC
Q 022336 258 KP 259 (299)
Q Consensus 258 KP 259 (299)
+.
T Consensus 146 ~~ 147 (161)
T cd01861 146 AG 147 (161)
T ss_pred CC
Confidence 44
No 357
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=39.52 E-value=2.1e+02 Score=23.24 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHh---CCCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCCC
Q 022336 204 GPLSSSIEQCKSV---FGHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKKP 259 (299)
Q Consensus 204 Pgv~e~L~~Lke~---fGikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KKP 259 (299)
..+.+|+..+.+. .+.+++||-|+..... ..........+.+.++++++.-+.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04176 89 QDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSK 148 (163)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCC
Confidence 3456666665542 2678999999974421 111223456667777887766554443
No 358
>PRK14129 heat shock protein HspQ; Provisional
Probab=39.49 E-value=17 Score=30.43 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=25.5
Q ss_pred HcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 180 RRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
.-|+||||||+|=+.. .....+..+.+. +.+|.+ .+-=+++=|..
T Consensus 16 l~~yrGVV~DVDP~fs--~~e~w~~~ia~~-~p~kdq-PwYHvl~en~~ 60 (105)
T PRK14129 16 LLGYLGVVVDIDPEYS--LEEPSPDELAVN-DELRAA-PWYHVVMEDDD 60 (105)
T ss_pred ecCCCeEEEeeCCCcC--CCchhHHhhccC-CCccCC-CceEEEEEcCC
Confidence 3699999999999876 222223333332 334554 54444444544
No 359
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=39.36 E-value=20 Score=27.21 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCCCcEEEEcCCcc
Q 022336 262 TAEEIEKHFGCQSSQLIMVDMCRI 285 (299)
Q Consensus 262 ~le~alk~lGi~PeEiamVGDrl~ 285 (299)
++.++++..|++..+++.|||--+
T Consensus 44 Gv~~~L~~~G~~~GD~V~Ig~~eF 67 (69)
T PF09269_consen 44 GVEKALRKAGAKEGDTVRIGDYEF 67 (69)
T ss_dssp THHHHHHTTT--TT-EEEETTEEE
T ss_pred CHHHHHHHcCCCCCCEEEEcCEEE
Confidence 467889999999999999999655
No 360
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=38.79 E-value=1.3e+02 Score=24.91 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHh--CCCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCCCH
Q 022336 204 GPLSSSIEQCKSV--FGHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKKPA 260 (299)
Q Consensus 204 Pgv~e~L~~Lke~--fGikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KKP~ 260 (299)
..+..|+.++++. .+.+++|+-|+..+.. .....+.++.+.+..++.++.-+.++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (168)
T cd01866 93 NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTAS 152 (168)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 4667788777653 2578999999985541 1223456677777788877655555543
No 361
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.67 E-value=2.4e+02 Score=24.46 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=32.4
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSAG 229 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNnaG 229 (299)
.+.+.+.|+..|.+|.|-+-..-.... -......+.+.|.+. |. +|++++...+
T Consensus 70 ~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~-g~~~i~~i~~~~~ 126 (266)
T cd06278 70 AEECRRNGIPVVLINRYVDGPGVDAVCSDNYEAGRLAAELLLAK-GCRRIAFIGGPAD 126 (266)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCEEEEChHHHHHHHHHHHHHC-CCceEEEEcCCCc
Confidence 456778899999998873210001111 123344556667765 65 7999987654
No 362
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=38.27 E-value=35 Score=34.80 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=40.8
Q ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHcCC----cEEEccCCCCH-HHHHHHHHHhCCCCCcEEEEcCCccccccccee
Q 022336 221 IAVFSNSAGLYEYDNDASKARKLEGKIGI----KVIRHRVKKPA-GTAEEIEKHFGCQSSQLIMVDMCRIVIFPGPVV 293 (299)
Q Consensus 221 VaIVSNnaGs~~~d~~~e~a~~~lk~LGI----~vI~ha~KKP~-p~le~alk~lGi~PeEiamVGDrl~DI~gAn~~ 293 (299)
=++||+.. +. ...|+.++-.||. +-|+.+.|--. .+|++|.++||- +-.-++|||.+-.-.+|+.+
T Consensus 373 nVlvTttq-Li-----palaKvLL~gLg~~fpiENIYSa~kiGKescFerI~~RFg~-K~~yvvIgdG~eee~aAK~l 443 (468)
T KOG3107|consen 373 NVLVTTTQ-LI-----PALAKVLLYGLGSSFPIENIYSATKIGKESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKAL 443 (468)
T ss_pred EEEEeccc-hh-----HHHHHHHHHhcCCcccchhhhhhhhccHHHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhh
Confidence 45667664 11 2355555555652 22333322211 369999999997 77788999998777777654
No 363
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=38.09 E-value=1.8e+02 Score=23.81 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=35.4
Q ss_pred CchHHHHHHHHHHhC--CCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCCCH
Q 022336 203 WGPLSSSIEQCKSVF--GHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKKPA 260 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~f--GikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KKP~ 260 (299)
...+.+|+..+++.. +.+++|+-|+..... .....+.+..+++.++++++.-+.+...
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (166)
T cd01869 90 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNAT 150 (166)
T ss_pred HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCc
Confidence 345566776665421 568889989874321 1122356777778888887766555543
No 364
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=38.02 E-value=1.7e+02 Score=28.48 Aligned_cols=96 Identities=16% Similarity=0.039 Sum_probs=58.2
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCC------------ccHHHHHHHHHHcCCc
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYD------------NDASKARKLEGKIGIK 250 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d------------~~~e~a~~~lk~LGI~ 250 (299)
..+=|+=+.|--+ +...=.|=+....+.|++. |++++|+|..-|-..-. .-.++.-.+++.++++
T Consensus 33 ~~vpVIsVGNltv--GGTGKTP~v~~L~~~L~~~-G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~ 109 (326)
T PF02606_consen 33 LPVPVISVGNLTV--GGTGKTPLVIWLARLLQAR-GYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLPVP 109 (326)
T ss_pred CCCcEEEEccccc--CCCCchHHHHHHHHHHHhc-CCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcCCc
Confidence 3344455555444 5545556666666677776 99999999976642110 0123455667777766
Q ss_pred EEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCccc
Q 022336 251 VIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCRIV 286 (299)
Q Consensus 251 vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl~D 286 (299)
++-. ++...+...++++++ -++++..|..-.
T Consensus 110 V~V~--~dR~~~~~~~~~~~~---~dviilDDGfQh 140 (326)
T PF02606_consen 110 VIVG--PDRVAAARAALKEFP---ADVIILDDGFQH 140 (326)
T ss_pred EEEe--CcHHHHHHHHHHHCC---CCEEEEcCCccc
Confidence 5543 233345677777776 568888887654
No 365
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=38.01 E-value=82 Score=31.93 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=58.4
Q ss_pred cEEEEeccCeeecCCCcc--------cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC----cE
Q 022336 184 KGVVFDKDNTLTAPYSLT--------LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI----KV 251 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~~~--------l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI----~v 251 (299)
=+||+|+.++|+-+. +. --|++.-+|..|.+ .+.|+|+|...|. .+..+++.++- .|
T Consensus 190 yTLVleledvLVhpd-ws~~tGwRf~kRPgvD~FL~~~a~--~yEIVi~sse~gm--------t~~pl~d~lDP~g~IsY 258 (393)
T KOG2832|consen 190 YTLVLELEDVLVHPD-WSYKTGWRFKKRPGVDYFLGHLAK--YYEIVVYSSEQGM--------TVFPLLDALDPKGYISY 258 (393)
T ss_pred ceEEEEeeeeEeccc-hhhhcCceeccCchHHHHHHhhcc--cceEEEEecCCcc--------chhhhHhhcCCcceEEE
Confidence 469999999999432 22 45888888888875 4899999999853 45556666642 11
Q ss_pred -EEccCCCCH-H-HHHHHHHHhCCCCCcEEEEcCCcc
Q 022336 252 -IRHRVKKPA-G-TAEEIEKHFGCQSSQLIMVDMCRI 285 (299)
Q Consensus 252 -I~ha~KKP~-p-~le~alk~lGi~PeEiamVGDrl~ 285 (299)
++.+..|-. + .++. +..++-++..++||.=+.+
T Consensus 259 kLfr~~t~y~~G~HvKd-ls~LNRdl~kVivVd~d~~ 294 (393)
T KOG2832|consen 259 KLFRGATKYEEGHHVKD-LSKLNRDLQKVIVVDFDAN 294 (393)
T ss_pred EEecCcccccCccchhh-hhhhccccceeEEEEcccc
Confidence 122222222 2 2333 4667889999999974443
No 366
>PF06006 DUF905: Bacterial protein of unknown function (DUF905); InterPro: IPR009253 This family consists of several short hypothetical proteobacterial proteins of unknown function.; PDB: 2HJJ_A.
Probab=38.01 E-value=31 Score=26.93 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=30.0
Q ss_pred HcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCc
Q 022336 180 RRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD 220 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGik 220 (299)
-..+|.||=|-||.+. |....+.|++..+|++..+.+|+.
T Consensus 30 g~HfRlvvRd~~g~mv-WRaWNFEp~Ag~~LNryI~~~Gi~ 69 (70)
T PF06006_consen 30 GTHFRLVVRDTEGQMV-WRAWNFEPDAGYWLNRYIRSYGIR 69 (70)
T ss_dssp SS--EEEEE-SS--EE-EEEESSSTTHHHHHHHHHTTTTTT
T ss_pred CCeEEEEEEcCCCcEE-EEeeccCCcHHHHHHHHHHHcCcc
Confidence 3568999999999999 999999999999999877666763
No 367
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=37.94 E-value=1.3e+02 Score=28.96 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCCCcCCccccCCcCCCC-HHHHHHcCCcEEEEecc-CeeecCCCcccCchHHHHHHHHHHhCCCcE
Q 022336 144 VEGIVSSTVVFAKDRHLALPHVTVPDIRYID-WAELQRRGFKGVVFDKD-NTLTAPYSLTLWGPLSSSIEQCKSVFGHDI 221 (299)
Q Consensus 144 ~~gi~~~~~~~~~~p~ll~P~~~v~sI~~Id-~~~Lk~~GIRaLVlD~D-NTLT~p~~~~l~Pgv~e~L~~Lke~fGikV 221 (299)
-+|+..+++++--.|. -.+.++.+.... ...+...|.+.|+.|+| .|++ +.+.. ++++-.. +-+.
T Consensus 50 t~Al~~al~~l~~~~g---deVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~------id~~~---~~~~i~~-~t~a 116 (363)
T PF01041_consen 50 TSALHLALRALGLGPG---DEVIVPAYTFPATASAILWAGAEPVFVDIDPETLN------IDPEA---LEKAITP-KTKA 116 (363)
T ss_dssp HHHHHHHHHHTTGGTT---SEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSS------B-HHH---HHHHHHT-TEEE
T ss_pred hHHHHHHHHhcCCCcC---ceEecCCCcchHHHHHHHHhccEEEEEeccCCcCC------cCHHH---HHHHhcc-CccE
Confidence 3566666665332221 123334444443 36677899999999999 7776 22333 3333332 4589
Q ss_pred EEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 222 AVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 222 aIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
+|+++-.|.. .+-+.+..++++.||.++..
T Consensus 117 i~~~h~~G~~---~d~~~i~~~~~~~~i~lIeD 146 (363)
T PF01041_consen 117 ILVVHLFGNP---ADMDAIRAIARKHGIPLIED 146 (363)
T ss_dssp EEEE-GGGB------HHHHHHHHHHTT-EEEEE
T ss_pred EEEecCCCCc---ccHHHHHHHHHHcCCcEEEc
Confidence 9999988754 24567788888889877653
No 368
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=37.85 E-value=16 Score=37.77 Aligned_cols=20 Identities=30% Similarity=0.217 Sum_probs=0.0
Q ss_pred cEEEEeccCeeecCCCcccC
Q 022336 184 KGVVFDKDNTLTAPYSLTLW 203 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~~~l~ 203 (299)
+.++||+|||||...+..++
T Consensus 23 ~~~~FDfDGTLt~~~s~f~~ 42 (497)
T PLN02177 23 QTVAADLDGTLLISRSAFPY 42 (497)
T ss_pred cEEEEecCCcccCCCCccHH
No 369
>PLN02808 alpha-galactosidase
Probab=37.84 E-value=1e+02 Score=31.09 Aligned_cols=105 Identities=19% Similarity=0.320 Sum_probs=68.5
Q ss_pred hhhhhhhHHHHHHHhccCCCHHHHHHHHHHHhcCCCCcCCccccCCcCCCCHHHHHHcCCcEEEEe---------ccCee
Q 022336 124 VLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFD---------KDNTL 194 (299)
Q Consensus 124 ~~~~~~~~~~~~~~~~q~~N~~gi~~~~~~~~~~p~ll~P~~~v~sI~~Id~~~Lk~~GIRaLVlD---------~DNTL 194 (299)
+..--|.|.- +.+++..+|-.-|...+..+.. .-|++.|++.|++| -+|-|
T Consensus 29 a~tPpmGWns-W~~~~~~i~e~~i~~~a~~mv~-------------------~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~ 88 (386)
T PLN02808 29 GLTPQMGWNS-WNHFQCNINETLIKQTADAMVS-------------------SGLAALGYKYINLDDCWAELKRDSQGNL 88 (386)
T ss_pred cCCCcceEEc-hHHHCCCCCHHHHHHHHHHHHH-------------------cchHHhCCEEEEEcCCcCCCCcCCCCCE
Confidence 3344466533 3567788888888887776543 34678899999887 24556
Q ss_pred ecCCCcccCchHHHHHHHHHHhCCCcEEEEeCC---------CCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 195 TAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS---------AGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 195 T~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNn---------aGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
. ++...++.|....-+.+++. |.|.+|-|.. +|+ ++.-...++.++ ..||+++-
T Consensus 89 ~-~d~~rFP~G~~~lad~iH~~-GlkfGiy~~~G~~tC~~~~pGs--~~~e~~DA~~fA-~WGvDylK 151 (386)
T PLN02808 89 V-PKASTFPSGIKALADYVHSK-GLKLGIYSDAGTLTCSKTMPGS--LGHEEQDAKTFA-SWGIDYLK 151 (386)
T ss_pred e-eChhhcCccHHHHHHHHHHC-CCceEEEecCCccccCCCCCcc--hHHHHHHHHHHH-HhCCCEEe
Confidence 5 44455666777777888887 9999999864 222 111123455554 68998774
No 370
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=37.83 E-value=1.6e+02 Score=21.41 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCc
Q 022336 236 DASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCR 284 (299)
Q Consensus 236 ~~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl 284 (299)
.-..|+.+++..|+++......+-.....++.+..|-..-=+++|||..
T Consensus 13 ~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~ 61 (73)
T cd03027 13 DCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKL 61 (73)
T ss_pred hHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEE
Confidence 3578899999999987665444432334455555565444677888764
No 371
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.51 E-value=1.6e+02 Score=29.34 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=37.2
Q ss_pred HHHHcCCcEEE-Eec----cCeeecCCCcccCchH-HHHHHHHHHhCCCcEEEEeCC-CCCCCCCccHHHHHHHHHHcCC
Q 022336 177 ELQRRGFKGVV-FDK----DNTLTAPYSLTLWGPL-SSSIEQCKSVFGHDIAVFSNS-AGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 177 ~Lk~~GIRaLV-lD~----DNTLT~p~~~~l~Pgv-~e~L~~Lke~fGikVaIVSNn-aGs~~~d~~~e~a~~~lk~LGI 249 (299)
.|++.|+++++ +|. ||-|...+...+..+. .+-++++-++ .+-|+-.. .| ...++.+++++|+
T Consensus 177 lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~~A---~lniv~~~~~~-------~~~a~~L~e~~Gi 246 (428)
T cd01965 177 ILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAGNA---KATIALGEYSG-------RKAAKALEEKFGV 246 (428)
T ss_pred HHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhccC---cEEEEEChhhh-------HHHHHHHHHHHCC
Confidence 45568999854 574 6666533332333322 2334444332 33333333 32 5677888888999
Q ss_pred cEEEc
Q 022336 250 KVIRH 254 (299)
Q Consensus 250 ~vI~h 254 (299)
+++..
T Consensus 247 P~~~~ 251 (428)
T cd01965 247 PYILF 251 (428)
T ss_pred Ceeec
Confidence 87743
No 372
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=37.48 E-value=86 Score=27.83 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=46.0
Q ss_pred CCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEE--EeCCCCCCCCCccHHHHHHHHHHc
Q 022336 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAV--FSNSAGLYEYDNDASKARKLEGKI 247 (299)
Q Consensus 172 ~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaI--VSNnaGs~~~d~~~e~a~~~lk~L 247 (299)
.|||+.+++.|++.+++=. | .+.....|....-++.+++. |+.+++ .+.-. . .+ ..+.|+.+.+.+
T Consensus 12 ~idw~~vk~~g~~fviiKa----t-eG~~~~D~~~~~n~~~A~~a-Gl~~G~Yhf~~~~-~--~~-a~~qA~~fi~~~ 79 (199)
T cd06412 12 SVDWSGAAANGARFAYVKA----T-EGTSYTNPRFSSQYNGAYNA-GLIRGAYHFALPD-Q--SS-GAAQADYFLDHG 79 (199)
T ss_pred CCCHHHHHhCCCeEEEEEE----e-cCCCccChhHHHHHHHHHHc-CCceEEEEEeecC-C--CC-HHHHHHHHHHHc
Confidence 5999999999999888764 3 45556788889999999987 987663 22110 0 01 145677777765
No 373
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=37.27 E-value=2.3e+02 Score=26.47 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=56.2
Q ss_pred CCcCCCCHH-------HHHHcCCcEEEEec-cCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHH
Q 022336 168 PDIRYIDWA-------ELQRRGFKGVVFDK-DNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASK 239 (299)
Q Consensus 168 ~sI~~Id~~-------~Lk~~GIRaLVlD~-DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~ 239 (299)
+||..-|+. .|.+ |+..|-+|+ ||..+ |+ ..+.|...+++++.-. ..+.+=++..++ ...
T Consensus 7 pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FV-PN-~tfg~~~i~~ir~~t~-~~~DvHLMv~~P--------~~~ 74 (229)
T PRK09722 7 PSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFV-PN-LTLSPFFVSQVKKLAS-KPLDVHLMVTDP--------QDY 74 (229)
T ss_pred eehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccC-CC-cccCHHHHHHHHhcCC-CCeEEEEEecCH--------HHH
Confidence 456666653 4444 999999996 89999 44 4577777777776422 245677777776 455
Q ss_pred HHHHHHHcCCcE-EEccCC-CCHH-HHHHHHHHhCCC
Q 022336 240 ARKLEGKIGIKV-IRHRVK-KPAG-TAEEIEKHFGCQ 273 (299)
Q Consensus 240 a~~~lk~LGI~v-I~ha~K-KP~p-~le~alk~lGi~ 273 (299)
++.+.+. |... ..|... ...+ ...+.++.+|++
T Consensus 75 i~~~~~a-Gad~it~H~Ea~~~~~~~~i~~Ik~~G~k 110 (229)
T PRK09722 75 IDQLADA-GADFITLHPETINGQAFRLIDEIRRAGMK 110 (229)
T ss_pred HHHHHHc-CCCEEEECccCCcchHHHHHHHHHHcCCC
Confidence 5555443 6554 345432 2222 244556677764
No 374
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=37.23 E-value=2e+02 Score=24.39 Aligned_cols=53 Identities=32% Similarity=0.262 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHh
Q 022336 204 GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHF 270 (299)
Q Consensus 204 Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~l 270 (299)
.......+.|++. |..++|+++=. +.+...++..||.++.-.. ..++++++.+
T Consensus 52 g~G~~~a~~l~~~-gvdvvi~~~iG---------~~a~~~l~~~GIkv~~~~~----~~V~e~i~~~ 104 (121)
T COG1433 52 GAGIRIAELLVDE-GVDVVIASNIG---------PNAYNALKAAGIKVYVAPG----GTVEEAIKAF 104 (121)
T ss_pred cchHHHHHHHHHc-CCCEEEECccC---------HHHHHHHHHcCcEEEecCC----CCHHHHHHHH
Confidence 3334456667776 99999999863 7788888999998775432 2255565555
No 375
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=37.22 E-value=1.7e+02 Score=27.52 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=42.5
Q ss_pred ccCCcCCCCHHHH-------HHcCCcEEEEec-cCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 166 TVPDIRYIDWAEL-------QRRGFKGVVFDK-DNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 166 ~v~sI~~Id~~~L-------k~~GIRaLVlD~-DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
..+||..-||..| .+.|...+-+|+ ||..+ ....+.|++.+++++.-+. -+.+=++-.++
T Consensus 6 iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFV--PNiTfGp~~v~~l~~~t~~-p~DvHLMV~~p 73 (220)
T COG0036 6 IAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFV--PNITFGPPVVKALRKITDL-PLDVHLMVENP 73 (220)
T ss_pred eeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcC--CCcccCHHHHHHHhhcCCC-ceEEEEecCCH
Confidence 4567777777544 458999999996 99999 4467888888888774332 45666666665
No 376
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.15 E-value=2.1e+02 Score=26.84 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHHhccCCCHHHHHHHHHHHhcC-CCCcCCccccCC-cCCCC----HHHHHHcCCcEEEEeccCeeecCCCcccCchHH
Q 022336 134 LKAALGQRINVEGIVSSTVVFAKD-RHLALPHVTVPD-IRYID----WAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLS 207 (299)
Q Consensus 134 ~~~~~~q~~N~~gi~~~~~~~~~~-p~ll~P~~~v~s-I~~Id----~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~ 207 (299)
-.+++.+.+|+..+...++.+-++ +..-+=++.+-+ |++.- .+.+++.|+.+|++= + .+.++..
T Consensus 61 ~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip--------D--lp~ee~~ 130 (256)
T TIGR00262 61 DLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA--------D--LPLEESG 130 (256)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEEC--------C--CChHHHH
Confidence 367899999999999999986434 332211555533 34322 256778898665442 1 1336677
Q ss_pred HHHHHHHHhCCCcEE-EEeCCCCCCCCCccHHHHHHHHHHc
Q 022336 208 SSIEQCKSVFGHDIA-VFSNSAGLYEYDNDASKARKLEGKI 247 (299)
Q Consensus 208 e~L~~Lke~fGikVa-IVSNnaGs~~~d~~~e~a~~~lk~L 247 (299)
++++.+++. |+..+ +++=+. ..++++.+.+.-
T Consensus 131 ~~~~~~~~~-gl~~i~lv~P~T-------~~eri~~i~~~~ 163 (256)
T TIGR00262 131 DLVEAAKKH-GVKPIFLVAPNA-------DDERLKQIAEKS 163 (256)
T ss_pred HHHHHHHHC-CCcEEEEECCCC-------CHHHHHHHHHhC
Confidence 888888886 88744 555443 256777777764
No 377
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=37.09 E-value=1.8e+02 Score=23.98 Aligned_cols=71 Identities=8% Similarity=0.004 Sum_probs=38.4
Q ss_pred CCcEEEEeccCeeecCCCcccCchHHHHHHHHHHh-----CCCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEcc
Q 022336 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSV-----FGHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHR 255 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~-----fGikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha 255 (299)
..-++++|.++--+ .+.+.+|++.+++. -+++++||-|+..... .....+.+.......++.++.-+
T Consensus 74 ~~~ilv~d~~~~~s-------~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 146 (165)
T cd04140 74 HAFILVYSVTSKQS-------LEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETS 146 (165)
T ss_pred CEEEEEEECCCHHH-------HHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEee
Confidence 34466777765222 22344555444431 1578999999985432 11223345556666777666555
Q ss_pred CCCC
Q 022336 256 VKKP 259 (299)
Q Consensus 256 ~KKP 259 (299)
.+..
T Consensus 147 A~~g 150 (165)
T cd04140 147 AKTN 150 (165)
T ss_pred cCCC
Confidence 4443
No 378
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=37.07 E-value=92 Score=31.17 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=35.6
Q ss_pred HHHHcCCcEEEE-e----ccCeeecCCCcccCch-HHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 177 ELQRRGFKGVVF-D----KDNTLTAPYSLTLWGP-LSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 177 ~Lk~~GIRaLVl-D----~DNTLT~p~~~~l~Pg-v~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.|++.|++++++ | +||=+.......+..+ -.+-|+++.++ .+-|+-...+ ...++.+++++|++
T Consensus 179 lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~ggt~leei~~~~~A---~lniv~~~~~-------~~~a~~Lee~~GiP 248 (417)
T cd01966 179 IIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGGTTLEDIRQMGRS---AATLAIGESM-------RKAAEALEERTGVP 248 (417)
T ss_pred HHHHcCCceEEecCcccccCCCCCCCccccCCCCCcHHHHHhhccC---eEEEEECHHH-------HHHHHHHHHHHCCC
Confidence 345689998765 6 4554442221111112 23444444443 3333333321 46788888889998
Q ss_pred EEEc
Q 022336 251 VIRH 254 (299)
Q Consensus 251 vI~h 254 (299)
++..
T Consensus 249 ~~~~ 252 (417)
T cd01966 249 YYVF 252 (417)
T ss_pred eeec
Confidence 7753
No 379
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=36.98 E-value=1.2e+02 Score=27.50 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=50.6
Q ss_pred CCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCc-EEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 173 IDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD-IAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 173 Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGik-VaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
+++..| .+|-|+|+|-+=|-.|+.=...=-|+..+..++|+.. |+. |+.+|-+. .=......+.+|.
T Consensus 35 v~~~~l-~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksK-GVd~iicvSVnD--------pFv~~aW~k~~g~ 102 (171)
T KOG0541|consen 35 VNVSSL-FKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSK-GVDEIICVSVND--------PFVMKAWAKSLGA 102 (171)
T ss_pred EEhHHh-cCCceEEEEcCCCccCCccccccCchHHHHHHHHHhc-CCcEEEEEecCc--------HHHHHHHHhhcCc
Confidence 344444 4689999999999999444666779999999999997 985 77777664 3456677777775
No 380
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=36.85 E-value=3.8e+02 Score=25.54 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=12.9
Q ss_pred CCHHHHHHcCCcEEEE
Q 022336 173 IDWAELQRRGFKGVVF 188 (299)
Q Consensus 173 Id~~~Lk~~GIRaLVl 188 (299)
-|...+++.|..+|||
T Consensus 77 ~di~~~~~~GadGvV~ 92 (248)
T PRK11572 77 EDIATVRELGFPGLVT 92 (248)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3456778899999998
No 381
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.84 E-value=83 Score=30.15 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=18.5
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSN 226 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSN 226 (299)
+-.|...+++++|++. |+++++..+
T Consensus 67 ~~FPdp~~mi~~L~~~-G~k~~~~v~ 91 (317)
T cd06598 67 KAFPDPAGMIADLAKK-GVKTIVITE 91 (317)
T ss_pred ccCCCHHHHHHHHHHc-CCcEEEEEc
Confidence 3446667888888887 888777665
No 382
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=36.74 E-value=64 Score=27.89 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=45.8
Q ss_pred CCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHc
Q 022336 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKI 247 (299)
Q Consensus 172 ~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~L 247 (299)
.|||..+++.|++.+++=. | .+.....|....-++.++++ |+++++.==..... ...-.+.|+.+.+.+
T Consensus 9 ~~dw~~~k~~gi~fviika----t-eG~~~~D~~~~~n~~~a~~a-Gl~~G~Yhf~~~~~-~~~a~~qA~~f~~~~ 77 (181)
T PF01183_consen 9 DIDWQKVKAAGIDFVIIKA----T-EGTSYVDPYFESNIKNAKAA-GLPVGAYHFARATN-SSDAEAQADYFLNQV 77 (181)
T ss_dssp S-SHHHHHHTTEEEEEEEE----E-ETTTEE-TTHHHHHHHHHHT-TSEEEEEEE--TTT-HCHHHHHHHHHHHCT
T ss_pred ccCHHHHHHCCCCEEEEEe----e-eCCCeecchHHHHHHHHHHc-CCeEEEEEEeccCC-cccHHHHHHHHHHHh
Confidence 4889999999998877754 4 45557788889999999997 99876431111000 011256788888887
No 383
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=36.39 E-value=2.6e+02 Score=24.07 Aligned_cols=77 Identities=21% Similarity=0.349 Sum_probs=40.8
Q ss_pred cCCcCCCCHHHH-------HHcCCcEEEEec-cCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHH
Q 022336 167 VPDIRYIDWAEL-------QRRGFKGVVFDK-DNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDAS 238 (299)
Q Consensus 167 v~sI~~Id~~~L-------k~~GIRaLVlD~-DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e 238 (299)
.++|..+|+..+ .+.|++.|-||. |+... +.. .+.+...+.|++.... .+.+.+++|++ .+
T Consensus 3 ~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~-~~~-~~~~~~~~~i~~~~~~-~~~v~l~~~d~--------~~ 71 (211)
T cd00429 3 APSILSADFANLGEELKRLEEAGADWIHIDVMDGHFV-PNL-TFGPPVVKALRKHTDL-PLDVHLMVENP--------ER 71 (211)
T ss_pred eeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCC-Ccc-ccCHHHHHHHHhhCCC-cEEEEeeeCCH--------HH
Confidence 356667776443 457999999953 55544 222 2333444444432111 23466888865 34
Q ss_pred HHHHHHHHcCCcEE-Ecc
Q 022336 239 KARKLEGKIGIKVI-RHR 255 (299)
Q Consensus 239 ~a~~~lk~LGI~vI-~ha 255 (299)
.++... ..|+..+ .|.
T Consensus 72 ~~~~~~-~~g~dgv~vh~ 88 (211)
T cd00429 72 YIEAFA-KAGADIITFHA 88 (211)
T ss_pred HHHHHH-HcCCCEEEECc
Confidence 454444 6676543 443
No 384
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=36.38 E-value=83 Score=30.18 Aligned_cols=24 Identities=0% Similarity=0.030 Sum_probs=17.9
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSN 226 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSN 226 (299)
-.|...+++++|++. |++|++..+
T Consensus 64 ~FPdp~~mi~~L~~~-G~kv~~~i~ 87 (319)
T cd06591 64 RFPDPKAMVRELHEM-NAELMISIW 87 (319)
T ss_pred hCCCHHHHHHHHHHC-CCEEEEEec
Confidence 346678889999987 998776543
No 385
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=36.34 E-value=1.2e+02 Score=29.28 Aligned_cols=72 Identities=10% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHcCCcEEEEeccCeeec-----CCCcccCchHHHHHHHHHHhCCCcEEEEe---CCCCCCCCCccHHHHHHHHHH
Q 022336 175 WAELQRRGFKGVVFDKDNTLTA-----PYSLTLWGPLSSSIEQCKSVFGHDIAVFS---NSAGLYEYDNDASKARKLEGK 246 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~-----p~~~~l~Pgv~e~L~~Lke~fGikVaIVS---NnaGs~~~d~~~e~a~~~lk~ 246 (299)
.+.|++.|+..|.+.+||.--. .+....++.+.+.++.+++. |+++.|.+ ... . ..-..+..++..
T Consensus 107 ~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~-g~~v~i~~vv~~~N----~-~~i~~~~~~~~~ 180 (378)
T PRK05301 107 LAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAH-GYPLTLNAVIHRHN----I-DQIPRIIELAVE 180 (378)
T ss_pred HHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHC-CCceEEEEEeecCC----H-HHHHHHHHHHHH
Confidence 3567888999999999985211 11112456677888888886 88766433 222 0 112244556677
Q ss_pred cCCcEE
Q 022336 247 IGIKVI 252 (299)
Q Consensus 247 LGI~vI 252 (299)
+|+..+
T Consensus 181 lgv~~i 186 (378)
T PRK05301 181 LGADRL 186 (378)
T ss_pred cCCCEE
Confidence 898654
No 386
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.17 E-value=3e+02 Score=24.19 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=30.5
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
..+++.|+.+|++|.+-- ..-.... -......+.+.|.+. |. ++++++...
T Consensus 73 ~~~~~~~ipvV~i~~~~~-~~~~~V~~d~~~~g~~a~~~l~~~-G~~~i~~l~~~~ 126 (269)
T cd06281 73 DALASLDLPIVLLDRDMG-GGADAVLFDHAAGMRQAVEYLISL-GHRRIALVGGGS 126 (269)
T ss_pred HHHHhCCCCEEEEecccC-CCCCEEEECcHHHHHHHHHHHHHC-CCcEEEEecCcc
Confidence 456778999999997632 1001111 123344555666665 76 688888764
No 387
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=35.84 E-value=10 Score=28.96 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=9.5
Q ss_pred HHHHHHHhCCCCCcEEEEcCCcccc
Q 022336 263 AEEIEKHFGCQSSQLIMVDMCRIVI 287 (299)
Q Consensus 263 le~alk~lGi~PeEiamVGDrl~DI 287 (299)
+.+.++.||+ ++|+||+..||
T Consensus 7 VqQLLK~fG~----~IY~gdr~~Di 27 (62)
T PF06014_consen 7 VQQLLKKFGI----IIYVGDRLWDI 27 (62)
T ss_dssp HHHHHHTTS---------S-HHHHH
T ss_pred HHHHHHHCCE----EEEeCChHHHH
Confidence 4566666665 67777777664
No 388
>PRK08005 epimerase; Validated
Probab=35.76 E-value=2.1e+02 Score=26.40 Aligned_cols=94 Identities=14% Similarity=0.074 Sum_probs=55.4
Q ss_pred CCcCCCCH-------HHHHHcCCcEEEEec-cCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHH
Q 022336 168 PDIRYIDW-------AELQRRGFKGVVFDK-DNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASK 239 (299)
Q Consensus 168 ~sI~~Id~-------~~Lk~~GIRaLVlD~-DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~ 239 (299)
+||..-|+ +.|.+.|+..|-+|+ ||..+ |+ ..+.|...+++++.-. ..+.+=+...++ ...
T Consensus 5 pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FV-PN-~tfG~~~i~~l~~~t~-~~~DvHLMv~~P--------~~~ 73 (210)
T PRK08005 5 PSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFI-NN-ITFGMKTIQAVAQQTR-HPLSFHLMVSSP--------QRW 73 (210)
T ss_pred eehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcC-Cc-cccCHHHHHHHHhcCC-CCeEEEeccCCH--------HHH
Confidence 45555655 445568999999996 89988 33 5667777777766433 245677777766 445
Q ss_pred HHHHHHHcCCcEE-EccCCCCHH-HHHHHHHHhCCC
Q 022336 240 ARKLEGKIGIKVI-RHRVKKPAG-TAEEIEKHFGCQ 273 (299)
Q Consensus 240 a~~~lk~LGI~vI-~ha~KKP~p-~le~alk~lGi~ 273 (299)
++.+.+ .|...+ .|...-+.+ ...+.++..|++
T Consensus 74 i~~~~~-~gad~It~H~Ea~~~~~~~l~~Ik~~G~k 108 (210)
T PRK08005 74 LPWLAA-IRPGWIFIHAESVQNPSEILADIRAIGAK 108 (210)
T ss_pred HHHHHH-hCCCEEEEcccCccCHHHHHHHHHHcCCc
Confidence 554443 355433 343212222 244555666653
No 389
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=35.60 E-value=1.9e+02 Score=26.33 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=39.2
Q ss_pred HHHHcCCcEEEEeccCeeecCCCcccCchH-HHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 177 ELQRRGFKGVVFDKDNTLTAPYSLTLWGPL-SSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 177 ~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv-~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
..++.|++.+.+. ... ....+.+.- .+..+.+++. |+++++...+. ....++.+.+++|++++..
T Consensus 163 ~~~~~gl~~~~~~---~~~--~~~~ps~~~l~~l~~~ik~~-~v~~i~~e~~~-------~~~~~~~la~~~g~~vv~l 228 (256)
T PF01297_consen 163 FAKRYGLKVIGVI---EIS--PGEEPSPKDLAELIKLIKEN-KVKCIFTEPQF-------SSKLAEALAKETGVKVVYL 228 (256)
T ss_dssp HHHHTT-EEEEEE---SSS--SSSSS-HHHHHHHHHHHHHT-T-SEEEEETTS--------THHHHHHHHCCT-EEEES
T ss_pred HHHhcCCceeeee---ccc--cccCCCHHHHHHHHHHhhhc-CCcEEEecCCC-------ChHHHHHHHHHcCCcEEEe
Confidence 3456788876655 222 244555544 4555567775 88888887665 2567888899999987654
No 390
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=35.30 E-value=1.7e+02 Score=30.55 Aligned_cols=68 Identities=24% Similarity=0.275 Sum_probs=44.4
Q ss_pred EEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 185 GVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 185 aLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
+||+=-||+++.-.+..+.+.-.+++++|++. |.+.+|+=|+..... ......++.+.++++++++.-
T Consensus 148 givVtTDgsi~dI~Re~y~~aEe~~i~eLk~~-~kPfiivlN~~dp~~-~et~~l~~~l~eky~vpvl~v 215 (492)
T TIGR02836 148 GVVVTTDGTITDIPREDYVEAEERVIEELKEL-NKPFIILLNSTHPYH-PETEALRQELEEKYDVPVLAM 215 (492)
T ss_pred EEEEEcCCCccccccccchHHHHHHHHHHHhc-CCCEEEEEECcCCCC-chhHHHHHHHHHHhCCceEEE
Confidence 44444489888444444555567889999997 999999999873110 112234556777889887654
No 391
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=34.91 E-value=67 Score=25.61 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=28.0
Q ss_pred eccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCC
Q 022336 189 DKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (299)
Q Consensus 189 D~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaG 229 (299)
+.|.++..-....-.+++.++++.+++. |.+++.+|++.+
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~-g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRR-GAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 3444433222333457889999999997 999999999874
No 392
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.90 E-value=3.1e+02 Score=23.89 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=32.3
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCC--cc--cCchHHHHHHHHHHhCCC-cEEEEeCCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYS--LT--LWGPLSSSIEQCKSVFGH-DIAVFSNSAG 229 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~--~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNnaG 229 (299)
.+.+++.||..|++|.+-.-. ..- .. -......+.+.|.+. |. +|++++...+
T Consensus 76 ~~~~~~~~ipvV~~~~~~~~~-~~~~~v~~d~~~~g~~~~~~l~~~-g~~~i~~i~~~~~ 133 (270)
T cd06294 76 IDYLKEEKFPFVVIGKPEDDK-ENITYVDNDNIQAGYDATEYLIKL-GHKKIAFVGGDLD 133 (270)
T ss_pred HHHHHhcCCCEEEECCCCCCC-CCCCeEEECcHHHHHHHHHHHHHc-CCccEEEecCCcc
Confidence 467788999999998763210 111 11 123445666677765 65 7888876553
No 393
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=34.48 E-value=2.2e+02 Score=28.55 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCcEEEc
Q 022336 237 ASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 237 ~e~a~~~lk~LGI~vI~h 254 (299)
...++.+++++|++++..
T Consensus 238 ~~~a~~Le~~~giP~~~~ 255 (435)
T cd01974 238 EKTAKFLEKKCKVPVETL 255 (435)
T ss_pred HHHHHHHHHHhCCCeeec
Confidence 456677777788877643
No 394
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=34.03 E-value=1.1e+02 Score=31.12 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=35.5
Q ss_pred HHHHcCCcEEE-EeccCeeecCCCcc----cC-chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 177 ELQRRGFKGVV-FDKDNTLTAPYSLT----LW-GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 177 ~Lk~~GIRaLV-lD~DNTLT~p~~~~----l~-Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.|+..|+++++ .|..++|-.+-... +. ....+-|+++-++ .+-|+-+..+ ...++.+++++|++
T Consensus 190 lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg~t~eei~~~~~A---~lniv~~~~~-------~~~a~~Lee~~GiP 259 (455)
T PRK14476 190 IIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGGTTLEEIRELGRS---AATIAIGESM-------RKAAEALEARTGVP 259 (455)
T ss_pred HHHHcCCceEEecCccccccCCCCCcccccCCCCCCHHHHHhhccC---cEEEEecHHH-------HHHHHHHHHHhCCC
Confidence 34568999864 56655554222211 11 1233444444443 3333333321 45678888888988
Q ss_pred EEEc
Q 022336 251 VIRH 254 (299)
Q Consensus 251 vI~h 254 (299)
++..
T Consensus 260 ~~~~ 263 (455)
T PRK14476 260 YLVF 263 (455)
T ss_pred eEec
Confidence 7743
No 395
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=33.94 E-value=20 Score=28.60 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=15.5
Q ss_pred cccccCCCCcccccccCCC
Q 022336 5 SVSAALPSSSCHYCYPVPN 23 (299)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (299)
-+|||.++.+|+-||||..
T Consensus 15 VaAaq~~~gscs~C~~ls~ 33 (79)
T PF07213_consen 15 VAAAQTQPGSCSGCYPLSP 33 (79)
T ss_pred HhhhcCCCCCCCCccccCH
Confidence 4567888889999999974
No 396
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=33.64 E-value=1.3e+02 Score=25.44 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=26.4
Q ss_pred CCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCC
Q 022336 218 GHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKK 258 (299)
Q Consensus 218 GikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KK 258 (299)
+.+++||-|+..+.. .....+.+..+++.++.+++.-+.+.
T Consensus 107 ~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 148 (172)
T cd04141 107 DIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAAL 148 (172)
T ss_pred CCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCC
Confidence 679999999985421 11234566777778888776554433
No 397
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=33.43 E-value=2.2e+02 Score=27.40 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=48.6
Q ss_pred cCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc-c-CCCCHHHHHHHHHHh-CC
Q 022336 196 APYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH-R-VKKPAGTAEEIEKHF-GC 272 (299)
Q Consensus 196 ~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h-a-~KKP~p~le~alk~l-Gi 272 (299)
+|........+.+.+++|++. +-..+-||-.+|...-+...+.+..+.+..|++.+.| . .-.....+...+..+ ..
T Consensus 31 PPk~~~~~~~l~~~~~~l~~~-~p~fvsVT~~~~~~~~~r~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~ 109 (296)
T PRK09432 31 PPRTSEMEQTLWNSIDRLSSL-KPKFVSVTYGANSGERDRTHSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNN 109 (296)
T ss_pred CcCCchHHHHHHHHHHHHHhc-CCCEEEEecCCCCcHHHHHHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHC
Confidence 555555555555667888874 6677778887764322223345566667789988877 1 122333343332222 23
Q ss_pred CCCcEEEE-cCC
Q 022336 273 QSSQLIMV-DMC 283 (299)
Q Consensus 273 ~PeEiamV-GDr 283 (299)
-..+++.+ ||.
T Consensus 110 GI~niLaLrGD~ 121 (296)
T PRK09432 110 GIRHIVALRGDL 121 (296)
T ss_pred CCCEEEEeCCCC
Confidence 34666665 553
No 398
>PRK10671 copA copper exporting ATPase; Provisional
Probab=33.34 E-value=24 Score=38.30 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=15.6
Q ss_pred cCCcEEEEeccCeeecCCCc
Q 022336 181 RGFKGVVFDKDNTLTAPYSL 200 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~ 200 (299)
..++.|+||++|||| -++.
T Consensus 515 ~~v~~v~fDKTGTLT-~g~~ 533 (834)
T PRK10671 515 STLDTLVFDKTGTLT-EGKP 533 (834)
T ss_pred cCCCEEEEcCCCccc-cCce
Confidence 569999999999999 4443
No 399
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=32.88 E-value=2.2e+02 Score=23.37 Aligned_cols=55 Identities=13% Similarity=0.250 Sum_probs=34.5
Q ss_pred chHHHHHHHHHHhC--CCcEEEEeCCCCCCCCC-ccHHHHHHHHHHcCCcEEEccCCC
Q 022336 204 GPLSSSIEQCKSVF--GHDIAVFSNSAGLYEYD-NDASKARKLEGKIGIKVIRHRVKK 258 (299)
Q Consensus 204 Pgv~e~L~~Lke~f--GikVaIVSNnaGs~~~d-~~~e~a~~~lk~LGI~vI~ha~KK 258 (299)
..+.+|++++++.. +.+++|+-|+..+.... ...+.+..+.+.+|++++.-+.+.
T Consensus 90 ~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (165)
T cd01865 90 NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKE 147 (165)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCC
Confidence 45667777776532 45799999998553221 123566677788888766554443
No 400
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=32.86 E-value=1.2e+02 Score=30.59 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=34.2
Q ss_pred HHHHcCCcEEEE-eccCeeecCC---Cc--ccCch-HHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 177 ELQRRGFKGVVF-DKDNTLTAPY---SL--TLWGP-LSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 177 ~Lk~~GIRaLVl-D~DNTLT~p~---~~--~l~Pg-v~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
.|.+.|++.+++ |+=.||..+- +. .+..+ ..+-|+++-++ .+-|+-...+ ...++.+++++|+
T Consensus 189 lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~gg~t~eei~~~~~A---~lniv~~~~~-------~~~a~~Lee~~gi 258 (432)
T TIGR01285 189 MVEAFGLKPIILPDLSRSLDGHLADDDFSPITQGGTTLEQIRQIGQS---CCTLAIGESM-------RRAASLLADRCGV 258 (432)
T ss_pred HHHHcCCceEEecccccccCCCCCCCccceeCCCCCcHHHHHhhccC---cEEEEEChhH-------HHHHHHHHHHHCC
Confidence 466789998764 6533443221 11 11111 23334444332 3333332221 4567888888998
Q ss_pred cEEEc
Q 022336 250 KVIRH 254 (299)
Q Consensus 250 ~vI~h 254 (299)
+++..
T Consensus 259 P~~~~ 263 (432)
T TIGR01285 259 PYIVF 263 (432)
T ss_pred CeEec
Confidence 87743
No 401
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=32.74 E-value=24 Score=29.82 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=29.3
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNn 227 (299)
-+++|||||+|=... .....+.++.+-++.++.+ .+-=+++-|.
T Consensus 26 fpfrGVV~DvDPeya--nteew~~~ip~~~rp~rdq-PfYHllaEnd 69 (116)
T COG3785 26 FPFRGVVFDVDPEYA--NTEEWPDEIPVNIRPLRDQ-PFYHLLAEND 69 (116)
T ss_pred cccceEEEecCcccc--cCccChhhccccccccccC-CceeeeeecC
Confidence 589999999998766 4444555555556666665 5555555554
No 402
>PRK09526 lacI lac repressor; Reviewed
Probab=32.69 E-value=3.5e+02 Score=24.88 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=25.7
Q ss_pred cCCcEEEEeccCeeecCCCccc--CchHHHHHHHHHHhCCC-cEEEEeCCCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTL--WGPLSSSIEQCKSVFGH-DIAVFSNSAG 229 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l--~Pgv~e~L~~Lke~fGi-kVaIVSNnaG 229 (299)
.|+.+|++|.+-..- -..+.. ..+...+.+.|.+. |. +++++++..+
T Consensus 143 ~~iPvV~~d~~~~~~-~~~V~~d~~~~~~~a~~~L~~~-G~~~I~~l~g~~~ 192 (342)
T PRK09526 143 ADVPCLFLDVSPQSP-VNSVSFDPEDGTRLGVEHLVEL-GHQRIALLAGPES 192 (342)
T ss_pred CCCCEEEEeccCCCC-CCEEEECcHHHHHHHHHHHHHC-CCCeEEEEeCCCc
Confidence 588888888641000 011111 23445566667775 65 6888876553
No 403
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=32.63 E-value=2.2e+02 Score=27.54 Aligned_cols=91 Identities=21% Similarity=0.213 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCC--CCcCCccccCCcCCCCHHHHHHcCCcEEEEeccC-eeecCCCcccCchHHHHHHHHHHhCCCcE
Q 022336 145 EGIVSSTVVFAKDR--HLALPHVTVPDIRYIDWAELQRRGFKGVVFDKDN-TLTAPYSLTLWGPLSSSIEQCKSVFGHDI 221 (299)
Q Consensus 145 ~gi~~~~~~~~~~p--~ll~P~~~v~sI~~Id~~~Lk~~GIRaLVlD~DN-TLT~p~~~~l~Pgv~e~L~~Lke~fGikV 221 (299)
+|+..++..+.-+| ..++|...+... ...+...|++.+.+|+|. +. .+.++. +++.... ..++
T Consensus 59 ~al~lal~al~~~~Gd~Viv~~~~~~~~----~~~~~~~G~~~v~vd~~~~~~------~~d~~~---l~~~i~~-~tka 124 (379)
T PRK11658 59 AGMHITLMALGIGPGDEVITPSLTWVST----LNMIVLLGATPVMVDVDRDTL------MVTPEA---IEAAITP-RTKA 124 (379)
T ss_pred HHHHHHHHHcCCCCCCEEEECCCcHHHH----HHHHHHcCCEEEEEecCCCcC------CcCHHH---HHHhccc-CCeE
Confidence 44555555441233 244444433322 245567899999999872 22 122222 2222222 3567
Q ss_pred EEEeCCCCCCCCCccHHHHHHHHHHcCCcEE
Q 022336 222 AVFSNSAGLYEYDNDASKARKLEGKIGIKVI 252 (299)
Q Consensus 222 aIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI 252 (299)
++.+|-.|.. .+.+.+..++++.|+.++
T Consensus 125 v~~~~~~G~~---~d~~~i~~~a~~~gi~vi 152 (379)
T PRK11658 125 IIPVHYAGAP---ADLDAIRAIGERYGIPVI 152 (379)
T ss_pred EEEeCCCCCc---CCHHHHHHHHHHcCCeEE
Confidence 7777776643 234567777777787554
No 404
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=32.62 E-value=3.1e+02 Score=23.31 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=36.1
Q ss_pred CCccccCCcCC------CCHHHHHHcCCcEEEEecc-CeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 162 LPHVTVPDIRY------IDWAELQRRGFKGVVFDKD-NTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 162 ~P~~~v~sI~~------Id~~~Lk~~GIRaLVlD~D-NTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
.|++.++++.. ++++.+ +| |.+|+..= ++-+ +....--+.+.+..+++.+. |+.|+.||-..
T Consensus 5 aP~f~~~~~~g~~~~~~~~l~~~--~G-k~vvl~F~~~~~c-~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~ 73 (173)
T cd03015 5 APDFKATAVVPNGEFKEISLSDY--KG-KWVVLFFYPLDFT-FVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDS 73 (173)
T ss_pred CCCCEeecccCCCCceEEehHHh--CC-CEEEEEEECCCCC-CcCHHHHHHHHHHHHHHHHC-CCEEEEEecCC
Confidence 57777776653 666666 46 66776652 2222 22222334445555566665 88888888654
No 405
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=32.45 E-value=2.2e+02 Score=22.93 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=39.7
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHH---hCCCcEEEEeCCCCCCCC-CccHHHHHHHHHHcCCcEEEccC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKS---VFGHDIAVFSNSAGLYEY-DNDASKARKLEGKIGIKVIRHRV 256 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke---~fGikVaIVSNnaGs~~~-d~~~e~a~~~lk~LGI~vI~ha~ 256 (299)
...=.+++|.++--+ ...+.+|+..+.+ ..+++++|+-|+..+... ....+.+..+.+.++++++.-+.
T Consensus 74 ~~~~ilv~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (164)
T cd04145 74 GEGFLLVFSVTDRGS-------FEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSA 146 (164)
T ss_pred CCEEEEEEECCCHHH-------HHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeC
Confidence 334446667664211 2344555555433 226789999999743211 11234566777778887766554
Q ss_pred CCC
Q 022336 257 KKP 259 (299)
Q Consensus 257 KKP 259 (299)
+..
T Consensus 147 ~~~ 149 (164)
T cd04145 147 KDR 149 (164)
T ss_pred CCC
Confidence 443
No 406
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=32.33 E-value=2.4e+02 Score=26.78 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
.+.|++.|. || -++..+.+++.+.++.+++..|+ .+.|.||..
T Consensus 56 ~~~gv~~V~------lt-GGEPll~~~l~~li~~i~~~~gi~~v~itTNG~ 99 (334)
T TIGR02666 56 VGLGVRKVR------LT-GGEPLLRKDLVELVARLAALPGIEDIALTTNGL 99 (334)
T ss_pred HHCCCCEEE------EE-CccccccCCHHHHHHHHHhcCCCCeEEEEeCch
Confidence 456887664 46 47777888999999988874478 899999865
No 407
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=32.25 E-value=2.4e+02 Score=22.75 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHh--CCCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCCC
Q 022336 205 PLSSSIEQCKSV--FGHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKKP 259 (299)
Q Consensus 205 gv~e~L~~Lke~--fGikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KKP 259 (299)
.+.+|+.+++.. .+.+++|+-|+..+.. ...+.+.+..+.+.+++.++.-+.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (161)
T cd04113 90 ALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTG 147 (161)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 345666655432 2678999999985532 122355677788888877666555443
No 408
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=32.17 E-value=2.6e+02 Score=24.02 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=47.0
Q ss_pred CCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcC
Q 022336 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIG 248 (299)
Q Consensus 172 ~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LG 248 (299)
.+||..+++.|++.+++=. | -+.....+.....++.+++. |+++++.--.... ..-...++.+.+.++
T Consensus 11 ~~~~~~~~~~g~~fviik~----t-~G~~~~D~~~~~~~~~a~~a-Gl~~G~Yhy~~~~---~~a~~qa~~fi~~~~ 78 (186)
T cd00599 11 SIDWNAVKAAGIDFVFIKA----T-EGTTYVDPKFATNRARARAA-GLLVGAYHFARPC---ANAEAQADNFVNTVP 78 (186)
T ss_pred CCCHHHHHhCCCcEEEEEE----e-CCCCccChHHHHHHHHHHHC-CCceEEEEEecCC---CCHHHHHHHHHHHcc
Confidence 4889999999999888754 3 34445778888899999997 9987765433210 112457777777664
No 409
>PF11181 YflT: Heat induced stress protein YflT
Probab=32.08 E-value=1.2e+02 Score=24.23 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHhCCC---cEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc-------c----CCCCHHHHHHHHHH
Q 022336 204 GPLSSSIEQCKSVFGH---DIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH-------R----VKKPAGTAEEIEKH 269 (299)
Q Consensus 204 Pgv~e~L~~Lke~fGi---kVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h-------a----~KKP~p~le~alk~ 269 (299)
.++...+++|+.. |+ .|.|+|... .+...+....++..+.. . ..+-...+...+..
T Consensus 10 ~E~~~~I~~L~~~-Gy~~ddI~Vva~d~---------~~~~~l~~~t~~~~~~~~~~~~~d~~~~~f~~~~d~~~~~l~~ 79 (103)
T PF11181_consen 10 EEALSAIEELKAQ-GYSEDDIYVVAKDK---------DRTERLADQTDTNTVGASEESFWDKIKNFFTSGGDELRSKLES 79 (103)
T ss_pred HHHHHHHHHHHHc-CCCcccEEEEEcCc---------hHHHHHHHhcCCceeccccccHHHHHHHhccCCcHHHHHHHHH
Confidence 4678889999997 98 499999764 45566665554432211 0 01111246778888
Q ss_pred hCCCCCcEEEEcCCccc-ccccceeee
Q 022336 270 FGCQSSQLIMVDMCRIV-IFPGPVVIF 295 (299)
Q Consensus 270 lGi~PeEiamVGDrl~D-I~gAn~~~~ 295 (299)
+|++.+++ +++.. |..|+.||+
T Consensus 80 lGl~~~ea----~~y~~~l~~Gkivl~ 102 (103)
T PF11181_consen 80 LGLSEDEA----ERYEEELDQGKIVLV 102 (103)
T ss_pred cCCCHHHH----HHHHHHHHCCCEEEe
Confidence 99887765 23333 556655554
No 410
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=32.00 E-value=1.9e+02 Score=27.92 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=39.3
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
..++..|.+.+.+|+|.. ...+.++ .++++... ..++++++|-.|.. .+.+.+..++++.|+.++.
T Consensus 86 ~~~~~~G~~~v~~d~d~~-----~~~~d~~---~le~~i~~-~tk~i~~~~~~G~~---~~~~~i~~la~~~~i~vIe 151 (375)
T PRK11706 86 NAFVLRGAKIVFVDIRPD-----TMNIDET---LIEAAITP-KTRAIVPVHYAGVA---CEMDTIMALAKKHNLFVVE 151 (375)
T ss_pred HHHHHcCCEEEEEecCCC-----cCCcCHH---HHHHhcCC-CCeEEEEeCCCCCc---cCHHHHHHHHHHcCCEEEE
Confidence 456678999999999842 1122222 23332222 45777778766643 2345677777788876553
No 411
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.00 E-value=88 Score=33.47 Aligned_cols=45 Identities=16% Similarity=0.362 Sum_probs=32.2
Q ss_pred chHHHHHHHH---HHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE
Q 022336 204 GPLSSSIEQC---KSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI 252 (299)
Q Consensus 204 Pgv~e~L~~L---ke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI 252 (299)
.++.+||+.+ ...+|-+|+++|+-+|.+. ...++.+.+++|+.++
T Consensus 92 ~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGK----STtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 92 SEVKQWLKQVAEFTPKLGSRILLLTGPSGCGK----STTVKVLSKELGYQLI 139 (634)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCCCCCCc----hhHHHHHHHhhCceee
Confidence 3566777732 2234678999999999873 4577888899997654
No 412
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=31.96 E-value=4e+02 Score=24.34 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=28.7
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCC
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNS 227 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNn 227 (299)
+.|++.|+..|++|.+..-..-.... -..+...+.+.|.+. |. +|+++++.
T Consensus 132 ~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~-G~~~I~~i~g~ 185 (329)
T TIGR01481 132 EEFSRSPVPVVLAGTVDKENELPSVNIDYKQATKEAVGELIAK-GHKSIAFVGGP 185 (329)
T ss_pred HHHHhcCCCEEEEecCCCCCCCCEEEECcHHHHHHHHHHHHHC-CCCeEEEEecC
Confidence 55677899999888642100000111 123445566677775 76 68888653
No 413
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=31.94 E-value=1e+02 Score=27.40 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=27.9
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHH-c-CCcEEEccCCCCHHHHHHHHHHhCCCCCc
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGK-I-GIKVIRHRVKKPAGTAEEIEKHFGCQSSQ 276 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~-L-GI~vI~ha~KKP~p~le~alk~lGi~PeE 276 (299)
+.+++|.. |.++++. |+++++|...-.-.++ ........+.+. + .++.+... ...-.+-+..+|++++.
T Consensus 103 EtElWPnl---l~~a~~~-~ip~~LvNarls~~s~-~~~~~~~~~~r~~l~~f~~i~aq----s~~da~r~~~lG~~~~~ 173 (186)
T PF04413_consen 103 ETELWPNL---LREAKRR-GIPVVLVNARLSERSF-RRYRRFPFLFRPLLSRFDRILAQ----SEADAERFRKLGAPPER 173 (186)
T ss_dssp S----HHH---HHH------S-EEEEEE---------------HHHHHHGGG-SEEEES----SHHHHHHHHTTT-S--S
T ss_pred ccccCHHH---HHHHhhc-CCCEEEEeeeeccccc-hhhhhhHHHHHHHHHhCCEEEEC----CHHHHHHHHHcCCCcce
Confidence 34556654 6677776 9999999877521100 001112222222 2 13333321 12233456778999999
Q ss_pred EEEEcCCcccc
Q 022336 277 LIMVDMCRIVI 287 (299)
Q Consensus 277 iamVGDrl~DI 287 (299)
+.++||--+|+
T Consensus 174 v~v~GnlKfd~ 184 (186)
T PF04413_consen 174 VHVTGNLKFDQ 184 (186)
T ss_dssp EEE---GGG--
T ss_pred EEEeCcchhcc
Confidence 99999988875
No 414
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=31.69 E-value=1.9e+02 Score=28.26 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=43.0
Q ss_pred CCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHH---HHHHHHHHhC-CC
Q 022336 198 YSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAG---TAEEIEKHFG-CQ 273 (299)
Q Consensus 198 ~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p---~le~alk~lG-i~ 273 (299)
....+.++..+.+.+..+.+|-+++|||....... ..-.+.+...++..|+.+.....-.|.| .++++++.+. .+
T Consensus 5 ~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~-~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~ 83 (380)
T cd08185 5 TKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKK-TGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG 83 (380)
T ss_pred CeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhh-ccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC
Confidence 34445566666665544435778999997541000 0112345555555677654332123333 3555555443 35
Q ss_pred CCcEEEEcC
Q 022336 274 SSQLIMVDM 282 (299)
Q Consensus 274 PeEiamVGD 282 (299)
++=++-||-
T Consensus 84 ~D~IiavGG 92 (380)
T cd08185 84 CDFVVGLGG 92 (380)
T ss_pred CCEEEEeCC
Confidence 666666775
No 415
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=31.54 E-value=1.3e+02 Score=27.53 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=31.5
Q ss_pred cEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCC--C----HHHHHHHHHHhCCCCCcEEEEc
Q 022336 220 DIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKK--P----AGTAEEIEKHFGCQSSQLIMVD 281 (299)
Q Consensus 220 kVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KK--P----~p~le~alk~lGi~PeEiamVG 281 (299)
-++|+||++ ...+..++++.||+++....++ | ...+.+.++.+ .++=++++|
T Consensus 29 i~~visn~~--------~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~--~~Dliv~ag 86 (207)
T PLN02331 29 VVVVVTNKP--------GCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGA--GVDFVLLAG 86 (207)
T ss_pred EEEEEEeCC--------CChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhc--CCCEEEEeC
Confidence 478889987 3456778888999876543222 1 12233444433 566666666
No 416
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=31.46 E-value=2.6e+02 Score=22.50 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHhC--CCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCCC
Q 022336 204 GPLSSSIEQCKSVF--GHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKKP 259 (299)
Q Consensus 204 Pgv~e~L~~Lke~f--GikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KKP 259 (299)
..+..++..+++.. +.+++|+-|+..... .....+.+..+.+.++++++.-+.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd01860 90 EKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTG 148 (163)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 34556677666542 356888999874431 112345666777778877665554443
No 417
>PLN03231 putative alpha-galactosidase; Provisional
Probab=31.38 E-value=71 Score=31.92 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=47.0
Q ss_pred HHhccCCCHHHHHHHHHHHhcCCCCcCCccccCCcCCCCHHHHHHcCCcEEEEe-------------------------c
Q 022336 136 AALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQRRGFKGVVFD-------------------------K 190 (299)
Q Consensus 136 ~~~~q~~N~~gi~~~~~~~~~~p~ll~P~~~v~sI~~Id~~~Lk~~GIRaLVlD-------------------------~ 190 (299)
-.++-++|=+-|...+. ++. ..|++.|++.|++| -
T Consensus 9 n~f~~~i~E~~i~~~Ad-~v~-------------------~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~ 68 (357)
T PLN03231 9 DSFSFTISEEQFLENAK-IVS-------------------ETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDK 68 (357)
T ss_pred hccCcCcCHHHHHHHHH-HHH-------------------cchHHhCCEEEEECCcccccccccccccccccccccccCC
Confidence 45666777777777776 332 35888899999988 1
Q ss_pred cCeeecCCCcccCc-----hHHHHHHHHHHhCCCcEEEEeCC
Q 022336 191 DNTLTAPYSLTLWG-----PLSSSIEQCKSVFGHDIAVFSNS 227 (299)
Q Consensus 191 DNTLT~p~~~~l~P-----gv~e~L~~Lke~fGikVaIVSNn 227 (299)
+|-|. |....++. |....-..+... |.|++|-+..
T Consensus 69 ~G~l~-pd~~rFPs~~~~~G~k~lADyvHs~-GLKfGIY~~~ 108 (357)
T PLN03231 69 WGRPL-PDPKRWPSTTGGKGFAPIAAKVHAL-GLKLGIHVMR 108 (357)
T ss_pred CCCcc-cCcccCCCCccccCcHHHHHHHHhC-CcceEEEecC
Confidence 34455 33333333 677777788887 9999998754
No 418
>PRK12289 GTPase RsgA; Reviewed
Probab=31.35 E-value=2.3e+02 Score=27.95 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHH---HHHHcCCcEEEccCCCCHHHHHHHHHHhCCCCCcEEEEcC
Q 022336 206 LSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARK---LEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDM 282 (299)
Q Consensus 206 v~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~---~lk~LGI~vI~ha~KKP~p~le~alk~lGi~PeEiamVGD 282 (299)
+..+|..+... |++++||=|+..+. +.+.... ..+.+|++++.-+.+.. .+++++++.+. ..-+++||-
T Consensus 109 LdR~L~~a~~~-~ip~ILVlNK~DLv----~~~~~~~~~~~~~~~g~~v~~iSA~tg-~GI~eL~~~L~--~ki~v~iG~ 180 (352)
T PRK12289 109 LSRFLVKAEST-GLEIVLCLNKADLV----SPTEQQQWQDRLQQWGYQPLFISVETG-IGLEALLEQLR--NKITVVAGP 180 (352)
T ss_pred HHHHHHHHHHC-CCCEEEEEEchhcC----ChHHHHHHHHHHHhcCCeEEEEEcCCC-CCHHHHhhhhc--cceEEEEeC
Confidence 34556555444 88888888887332 1122222 22356766655443333 23455555443 123677764
No 419
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=31.16 E-value=2.3e+02 Score=30.88 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=37.7
Q ss_pred cccccccccccccchhhhhhhhHHHHHHHhccCCCHHHHHHHHHHHhcCCCCcCCccccCCcCCCCHHHHH
Q 022336 109 EQDEEPRYNKDKYWTVLCTNMWWSQLKAALGQRINVEGIVSSTVVFAKDRHLALPHVTVPDIRYIDWAELQ 179 (299)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~N~~gi~~~~~~~~~~p~ll~P~~~v~sI~~Id~~~Lk 179 (299)
|++-++-++-.+...+=|-...| |++-.-. +-+=|+.+.|.+.|..+.+|+.+.++
T Consensus 275 ElRa~ri~~itqnadIdFcK~FW-----------nl~E~e~----~~~lp~~~~~~v~vnrL~elP~e~~~ 330 (880)
T KOG4388|consen 275 ELRAARIERITQNADIDFCKAFW-----------NLTEMEV----LSSLPNMASATVRVNRLLELPPEAFE 330 (880)
T ss_pred HHHHHHHHhhhhccccHHHHHHh-----------hHHHHHH----hhhchhhhcchhhhhHHHhCCchhhc
Confidence 34445556666777777777778 4433322 22348888999999999999988764
No 420
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=30.98 E-value=87 Score=27.58 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=36.0
Q ss_pred CCCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEE
Q 022336 172 YIDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIA 222 (299)
Q Consensus 172 ~Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVa 222 (299)
.|||+.++..|++.+++-. | -+.....|...+-++.++++ |++++
T Consensus 12 ~i~w~~vk~~g~~fv~ika----t-eg~~~~D~~f~~n~~~A~~a-Gl~~G 56 (196)
T cd06416 12 VSTFQCLKNNGYSFAIIRA----Y-RSNGSFDPNSVTNIKNARAA-GLSTD 56 (196)
T ss_pred hhhhhHHHhCCceEEEEEE----E-ccCCccChHHHHHHHHHHHc-CCccc
Confidence 5999999999999988863 4 34445788888899999997 98765
No 421
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=30.98 E-value=2.2e+02 Score=22.93 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHh-CCCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCC
Q 022336 204 GPLSSSIEQCKSV-FGHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKK 258 (299)
Q Consensus 204 Pgv~e~L~~Lke~-fGikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KK 258 (299)
..+..|+..+.+. .+++++||-|+..... .....+.+..+.+.+|++++..+.+.
T Consensus 91 ~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 147 (162)
T cd04106 91 EAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKD 147 (162)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 4455666665542 2578999999984321 11223566777888898877655444
No 422
>PRK00098 GTPase RsgA; Reviewed
Probab=30.95 E-value=3.1e+02 Score=25.96 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHH---HHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCCCcEEEEcC
Q 022336 207 SSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASK---ARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDM 282 (299)
Q Consensus 207 ~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~---a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~PeEiamVGD 282 (299)
..++..+.+. |++++||=|+..+.. +.+. .....+.+|++++.-+.++. .++.++.+.+ .-.-+++||-
T Consensus 101 dr~L~~~~~~-~ip~iIVlNK~DL~~---~~~~~~~~~~~~~~~g~~v~~vSA~~g-~gi~~L~~~l--~gk~~~~~G~ 172 (298)
T PRK00098 101 DRFLVLAEAN-GIKPIIVLNKIDLLD---DLEEARELLALYRAIGYDVLELSAKEG-EGLDELKPLL--AGKVTVLAGQ 172 (298)
T ss_pred HHHHHHHHHC-CCCEEEEEEhHHcCC---CHHHHHHHHHHHHHCCCeEEEEeCCCC-ccHHHHHhhc--cCceEEEECC
Confidence 4566666664 899999999984321 1222 22333456776665444443 2355555543 2345667774
No 423
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=30.82 E-value=69 Score=28.08 Aligned_cols=82 Identities=18% Similarity=0.097 Sum_probs=48.0
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEcc
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHR 255 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha 255 (299)
+.|......+|+.=+|.|-. +.-...+.++++. |++++++=|......-.--...++.+.+.||++++...
T Consensus 72 ~~l~~~~~D~ii~VvDa~~l--------~r~l~l~~ql~e~-g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~s 142 (156)
T PF02421_consen 72 DYLLSEKPDLIIVVVDATNL--------ERNLYLTLQLLEL-GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVS 142 (156)
T ss_dssp HHHHHTSSSEEEEEEEGGGH--------HHHHHHHHHHHHT-TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEB
T ss_pred HHHhhcCCCEEEEECCCCCH--------HHHHHHHHHHHHc-CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEE
Confidence 34445677777777777643 3344566778886 99999999986111000001136788888999988754
Q ss_pred CCCCHHHHHHHH
Q 022336 256 VKKPAGTAEEIE 267 (299)
Q Consensus 256 ~KKP~p~le~al 267 (299)
.++- .+++++.
T Consensus 143 a~~~-~g~~~L~ 153 (156)
T PF02421_consen 143 ARTG-EGIDELK 153 (156)
T ss_dssp TTTT-BTHHHHH
T ss_pred eCCC-cCHHHHH
Confidence 3332 2344443
No 424
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=30.74 E-value=2.1e+02 Score=26.49 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=51.5
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCc-EEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEc
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHD-IAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRH 254 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGik-VaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~h 254 (299)
+.+++.|+..+++.-++..- ..+.++.|.+. +.. ++++|... +.+......+. |+|++..
T Consensus 25 ~~a~~~Gy~l~l~~t~~~~~----------~e~~i~~l~~~-~vDGiI~~s~~~-------~~~~l~~~~~~-~iPvV~~ 85 (279)
T PF00532_consen 25 QEAREHGYQLLLCNTGDDEE----------KEEYIELLLQR-RVDGIILASSEN-------DDEELRRLIKS-GIPVVLI 85 (279)
T ss_dssp HHHHHTTCEEEEEEETTTHH----------HHHHHHHHHHT-TSSEEEEESSSC-------TCHHHHHHHHT-TSEEEEE
T ss_pred HHHHHcCCEEEEecCCCchH----------HHHHHHHHHhc-CCCEEEEecccC-------ChHHHHHHHHc-CCCEEEE
Confidence 45678899988876554322 22677777775 664 55554433 23556666666 8887754
Q ss_pred cCC--CC--HH--------HHHHHHHHh-CCCCCc-EEEEcCCccc
Q 022336 255 RVK--KP--AG--------TAEEIEKHF-GCQSSQ-LIMVDMCRIV 286 (299)
Q Consensus 255 a~K--KP--~p--------~le~alk~l-Gi~PeE-iamVGDrl~D 286 (299)
... .| .+ +...+.+++ ..--.+ +++||.....
T Consensus 86 ~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~~~~~ 131 (279)
T PF00532_consen 86 DRYIDNPEGVPSVYIDNYEAGYEATEYLIKKGHRRPIAFIGGPEDS 131 (279)
T ss_dssp SS-SCTTCTSCEEEEEHHHHHHHHHHHHHHTTCCSTEEEEEESTTT
T ss_pred EeccCCcccCCEEEEcchHHHHHHHHHHHhcccCCeEEEEecCcch
Confidence 221 22 11 223444444 223456 9999876544
No 425
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=30.39 E-value=3.1e+02 Score=22.54 Aligned_cols=66 Identities=12% Similarity=0.118 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHh--CCCcEEEEeCCCCCCCC-CccHHHHHHHHHHcCCcEEEccCCCCHH---HHHHHHHH
Q 022336 204 GPLSSSIEQCKSV--FGHDIAVFSNSAGLYEY-DNDASKARKLEGKIGIKVIRHRVKKPAG---TAEEIEKH 269 (299)
Q Consensus 204 Pgv~e~L~~Lke~--fGikVaIVSNnaGs~~~-d~~~e~a~~~lk~LGI~vI~ha~KKP~p---~le~alk~ 269 (299)
..+.+|+..+++. -+.+++|+-|+..+... +...+.+..+++.++.+++.-+.+.... .++++++.
T Consensus 92 ~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 92 ENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred HhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4556666665542 15688899898754321 1233456677777888776655555432 14555544
No 426
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=30.37 E-value=50 Score=26.06 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=35.0
Q ss_pred CcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 183 FKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 183 IRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
++.||+|+.++-. - +..-..-+.+..+++++. |.++.++.-+ ..+....+..|+
T Consensus 48 ~~~vIlD~s~v~~-i-Dssgi~~L~~~~~~~~~~-g~~~~l~~~~----------~~v~~~l~~~~~ 101 (117)
T PF01740_consen 48 IKNVILDMSGVSF-I-DSSGIQALVDIIKELRRR-GVQLVLVGLN----------PDVRRILERSGL 101 (117)
T ss_dssp SSEEEEEETTESE-E-SHHHHHHHHHHHHHHHHT-TCEEEEESHH----------HHHHHHHHHTTG
T ss_pred ceEEEEEEEeCCc-C-CHHHHHHHHHHHHHHHHC-CCEEEEEECC----------HHHHHHHHHcCC
Confidence 7999999999844 1 111122334455567776 8888888654 466666777775
No 427
>PLN02527 aspartate carbamoyltransferase
Probab=30.22 E-value=5.1e+02 Score=25.02 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=62.7
Q ss_pred CCHH-HHHHcCCcEEEEeccC-eeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 173 IDWA-ELQRRGFKGVVFDKDN-TLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 173 Id~~-~Lk~~GIRaLVlD~DN-TLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
++|+ ..++.|-.++.++-+. +.- ..-.+.+.+..+-+.. + ..++++-... ...++.+++..++|
T Consensus 55 ~SFe~A~~~LGg~~i~l~~~~~~s~----~~kgEs~~Dta~vls~-y-~D~iviR~~~--------~~~~~~~a~~~~vP 120 (306)
T PLN02527 55 LSFESAMKRLGGEVLTTENAGEFSS----AAKGETLEDTIRTVEG-Y-SDIIVLRHFE--------SGAARRAAATAEIP 120 (306)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCccc----cCCCcCHHHHHHHHHH-h-CcEEEEECCC--------hhHHHHHHHhCCCC
Confidence 4453 4457899999998763 322 1123666777766665 3 4555554433 45688888888999
Q ss_pred EEEccC-CCCHH--H---HHHHHHHhC-CCCCcEEEEcCCcc
Q 022336 251 VIRHRV-KKPAG--T---AEEIEKHFG-CQSSQLIMVDMCRI 285 (299)
Q Consensus 251 vI~ha~-KKP~p--~---le~alk~lG-i~PeEiamVGDrl~ 285 (299)
+|--.. ..-+| . +..+.+++| ++--.+++|||..+
T Consensus 121 VINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD~~~ 162 (306)
T PLN02527 121 VINAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLAN 162 (306)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCCC
Confidence 886533 23344 2 456667787 56668999999633
No 428
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=30.13 E-value=1.7e+02 Score=22.59 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=31.5
Q ss_pred cCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
.+.+.|++|+-++-.- +..--.-+.+..+++++. |.++.++.-+ ..+..+.+..|+
T Consensus 37 ~~~~~vilDls~v~~i--Dssgl~~L~~l~~~~~~~-g~~l~l~~~~----------~~v~~~l~~~gl 92 (100)
T cd06844 37 VAGKTIVIDISALEFM--DSSGTGVLLERSRLAEAV-GGQFVLTGIS----------PAVRITLTESGL 92 (100)
T ss_pred CCCCEEEEECCCCcEE--cHHHHHHHHHHHHHHHHc-CCEEEEECCC----------HHHHHHHHHhCc
Confidence 3578888888776441 111122334445566665 7777776544 355556666665
No 429
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=30.12 E-value=1.6e+02 Score=29.00 Aligned_cols=63 Identities=13% Similarity=0.223 Sum_probs=40.0
Q ss_pred cCchHHHH-HHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCc--EEEccCCCCHHHHHHHHHHh
Q 022336 202 LWGPLSSS-IEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIK--VIRHRVKKPAGTAEEIEKHF 270 (299)
Q Consensus 202 l~Pgv~e~-L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~--vI~ha~KKP~p~le~alk~l 270 (299)
..+|+-.. -++|.++ |++|+++|.+. ++-...++.+++..++. .+.....|++..++++.+.+
T Consensus 57 aTDGIGKayA~eLAkr-G~nvvLIsRt~-----~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l 122 (312)
T KOG1014|consen 57 ATDGIGKAYARELAKR-GFNVVLISRTQ-----EKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKL 122 (312)
T ss_pred CCCcchHHHHHHHHHc-CCEEEEEeCCH-----HHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHh
Confidence 34666443 4467776 99999999985 12223456677777754 33445567776677777666
No 430
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=30.00 E-value=1e+02 Score=34.67 Aligned_cols=37 Identities=16% Similarity=0.489 Sum_probs=27.6
Q ss_pred chHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 204 GPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 204 Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
..+-++..+|+.+ |+++.+||... ...++++++..||
T Consensus 593 ~~vP~Av~~CrsA-GIkvimVTgdh--------piTAkAiA~~vgI 629 (1019)
T KOG0203|consen 593 AAVPDAVGKCRSA-GIKVIMVTGDH--------PITAKAIAKSVGI 629 (1019)
T ss_pred ccCchhhhhhhhh-CceEEEEecCc--------cchhhhhhhheee
Confidence 3455778899997 99999999876 4456666666663
No 431
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=29.88 E-value=62 Score=29.78 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=29.4
Q ss_pred eeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 193 TLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 193 TLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
||| -++..+.+.+.+.++.+++. |+++.|-||..
T Consensus 77 ~lT-GGEPll~~~l~~li~~l~~~-g~~v~leTNGt 110 (238)
T TIGR03365 77 SLS-GGNPALQKPLGELIDLGKAK-GYRFALETQGS 110 (238)
T ss_pred EEe-CCchhhhHhHHHHHHHHHHC-CCCEEEECCCC
Confidence 467 57777888999999999987 99999999986
No 432
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=29.69 E-value=3.6e+02 Score=24.12 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=44.4
Q ss_pred HHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCC
Q 022336 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKK 258 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KK 258 (299)
++.||..+++|.|++- ........+.|+++++. |+. +|+++.. ..|....+.+.+++.+|+..+..=-++
T Consensus 55 ~~lgipl~~i~~~~~~-----e~~~~~l~~~l~~~~~~-g~~-~vv~G~i---~sd~~~~~~e~~~~~~gl~~~~PLW~~ 124 (194)
T cd01994 55 EAMGIPLIRIEISGEE-----EDEVEDLKELLRKLKEE-GVD-AVVFGAI---LSEYQRTRVERVCERLGLEPLAPLWGR 124 (194)
T ss_pred HHcCCcEEEEeCCCCc-----hHHHHHHHHHHHHHHHc-CCC-EEEECcc---ccHHHHHHHHHHHHHcCCEEEecccCC
Confidence 4579999999997621 11224555667777766 666 4455443 123345688899999999765432234
Q ss_pred CHH
Q 022336 259 PAG 261 (299)
Q Consensus 259 P~p 261 (299)
+..
T Consensus 125 ~~~ 127 (194)
T cd01994 125 DQE 127 (194)
T ss_pred CHH
Confidence 433
No 433
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=29.64 E-value=1.2e+02 Score=29.06 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=33.6
Q ss_pred HHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 178 LQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 178 Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
+.+.|+..|. ++ -++..+.|.+.+.++.+++. |..+.|+||..
T Consensus 68 i~e~g~~~V~------i~-GGEPLL~pdl~eiv~~~~~~-g~~v~l~TNG~ 110 (318)
T TIGR03470 68 VDECGAPVVS------IP-GGEPLLHPEIDEIVRGLVAR-KKFVYLCTNAL 110 (318)
T ss_pred HHHcCCCEEE------Ee-CccccccccHHHHHHHHHHc-CCeEEEecCce
Confidence 3445777654 35 47788899999999999886 88999999975
No 434
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=29.64 E-value=42 Score=27.31 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCCcCCccccCCcCC-CCHHHHHHcCCcEEEEec
Q 022336 158 RHLALPHVTVPDIRY-IDWAELQRRGFKGVVFDK 190 (299)
Q Consensus 158 p~ll~P~~~v~sI~~-Id~~~Lk~~GIRaLVlD~ 190 (299)
|+.+.|.+++.+... -+++.|++.||++|| ++
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi-~l 33 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVI-NV 33 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEE-Ec
Confidence 566788888877654 468999999999776 44
No 435
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=29.48 E-value=4.2e+02 Score=23.81 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCC-CCcEEEEc
Q 022336 262 TAEEIEKHFGCQ-SSQLIMVD 281 (299)
Q Consensus 262 ~le~alk~lGi~-PeEiamVG 281 (299)
++.+++++.|+. |+++.+||
T Consensus 227 gv~~al~~~g~~ip~di~vvg 247 (309)
T PRK11041 227 GALSQAKRMGLRVPQDLSIIG 247 (309)
T ss_pred HHHHHHHHcCCCCCcceEEEE
Confidence 466778888875 78888888
No 436
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=29.47 E-value=58 Score=26.85 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=37.6
Q ss_pred CCcEEEEeccCeeecCCCcccCchHHHHHHHHHHh------CCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC-cEEEc
Q 022336 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSV------FGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI-KVIRH 254 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~------fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI-~vI~h 254 (299)
..-.+++|+|+.-+ ...+.+|+.++.+. -+++++|+-|+..+.......+.++.+.+.++. +++.-
T Consensus 79 d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 151 (170)
T cd04116 79 DCCLLTFAVDDSQS-------FQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFET 151 (170)
T ss_pred CEEEEEEECCCHHH-------HHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEE
Confidence 33445678775422 12334454443321 157899999998543222234567778788875 45444
Q ss_pred cC
Q 022336 255 RV 256 (299)
Q Consensus 255 a~ 256 (299)
+.
T Consensus 152 Sa 153 (170)
T cd04116 152 SA 153 (170)
T ss_pred EC
Confidence 43
No 437
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=29.38 E-value=31 Score=35.92 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=0.0
Q ss_pred cCCcEEEEeccCeeecCCCcccC
Q 022336 181 RGFKGVVFDKDNTLTAPYSLTLW 203 (299)
Q Consensus 181 ~GIRaLVlD~DNTLT~p~~~~l~ 203 (299)
..-+.+++|+||||+...+..++
T Consensus 6 ~~~~~~~fD~DGTLlrs~ssFpy 28 (498)
T PLN02499 6 TTSYSVVSELEGTLLKDADPFSY 28 (498)
T ss_pred cccceEEEecccceecCCCccHH
No 438
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=29.31 E-value=4.3e+02 Score=23.91 Aligned_cols=95 Identities=11% Similarity=0.179 Sum_probs=54.7
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE-E
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI-R 253 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI-~ 253 (299)
.....+.|..+|-|= +.+.....+.++....+.+.....--+|+|+.|.. .+.+..+.+.++++++ .
T Consensus 16 a~~~~~~Gad~iGfI----~~~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~--------~~~i~~~~~~~~~d~vQL 83 (210)
T PRK01222 16 AEAAAELGADAIGFV----FYPKSPRYVSPEQAAELAAALPPFVKVVGVFVNAS--------DEEIDEIVETVPLDLLQL 83 (210)
T ss_pred HHHHHHcCCCEEEEc----cCCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCC--------HHHHHHHHHhcCCCEEEE
Confidence 445667888888882 33333445666665555443222123688998886 7788888889888766 4
Q ss_pred ccCCCCHHHHHHHHHHhCCCCCcEEEEcC
Q 022336 254 HRVKKPAGTAEEIEKHFGCQSSQLIMVDM 282 (299)
Q Consensus 254 ha~KKP~p~le~alk~lGi~PeEiamVGD 282 (299)
|+...| ..+..+.+.++++.=.++-|.|
T Consensus 84 Hg~e~~-~~~~~l~~~~~~~iik~i~v~~ 111 (210)
T PRK01222 84 HGDETP-EFCRQLKRRYGLPVIKALRVRS 111 (210)
T ss_pred CCCCCH-HHHHHHHhhcCCcEEEEEecCC
Confidence 654322 2233343444554444444543
No 439
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=29.07 E-value=2.7e+02 Score=27.46 Aligned_cols=83 Identities=10% Similarity=0.017 Sum_probs=38.8
Q ss_pred CCcccCchHHHHHHHHHHhCCC-cEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHH---HHHHHHHHhC-C
Q 022336 198 YSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAG---TAEEIEKHFG-C 272 (299)
Q Consensus 198 ~~~~l~Pgv~e~L~~Lke~fGi-kVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p---~le~alk~lG-i 272 (299)
....+.++..+.+.+..+.+|. +++|||.+. +.+.. -.+++...++..|+.+.....-.|.| .++++++... .
T Consensus 10 ~~i~~G~g~~~~l~~~~~~~g~~~~livt~~~-~~~~g-~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~ 87 (383)
T PRK09860 10 SVNVIGADSLTDAMNMMADYGFTRTLIVTDNM-LTKLG-MAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN 87 (383)
T ss_pred CeEEECcCHHHHHHHHHHhcCCCEEEEEcCcc-hhhCc-cHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc
Confidence 3334455666555443333464 677777642 21110 12345555555566543332223333 3555555443 2
Q ss_pred CCCcEEEEcC
Q 022336 273 QSSQLIMVDM 282 (299)
Q Consensus 273 ~PeEiamVGD 282 (299)
.++=++-||-
T Consensus 88 ~~D~IiaiGG 97 (383)
T PRK09860 88 NCDSVISLGG 97 (383)
T ss_pred CCCEEEEeCC
Confidence 4555555775
No 440
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=28.97 E-value=2.4e+02 Score=27.56 Aligned_cols=64 Identities=25% Similarity=0.170 Sum_probs=38.7
Q ss_pred HHHHHcCCcEEEEeccC-eeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE
Q 022336 176 AELQRRGFKGVVFDKDN-TLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI 252 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DN-TLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI 252 (299)
......|.+.+++|+|- |+ .+.++ .++++... ..++++++|-.|.. .+.+.+..++++.|+.++
T Consensus 86 ~~~~~~G~~~v~vd~d~~~~------~~d~~---~le~~i~~-~tk~Iip~~~~G~~---~d~~~I~~la~~~~i~vI 150 (376)
T TIGR02379 86 NAFVLRGAKIVFVDIRPDTM------NIDET---LIESAITH-RTKAIVPVHYAGVA---CDMDTIMALANKHQLFVI 150 (376)
T ss_pred HHHHHcCCEEEEEecCCCcC------CCCHH---HHHHhcCc-CceEEEEeCCCCCc---cCHHHHHHHHHHCCCEEE
Confidence 34556899999999983 22 22222 23333222 45777888876643 234577777888887554
No 441
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=28.88 E-value=1.7e+02 Score=24.12 Aligned_cols=80 Identities=15% Similarity=0.171 Sum_probs=47.7
Q ss_pred CcCCccccCCcCC--CCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccH
Q 022336 160 LALPHVTVPDIRY--IDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDA 237 (299)
Q Consensus 160 ll~P~~~v~sI~~--Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~ 237 (299)
--.|++.+.++.. ++++.+ +| |.+++++=.|...+....-.+.+.+..+++++. |+.++-||-.. .
T Consensus 8 ~~~p~f~l~~~~G~~~~l~~~--~g-k~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~--------~ 75 (154)
T PRK09437 8 DIAPKFSLPDQDGEQVSLTDF--QG-QRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDK--------P 75 (154)
T ss_pred CcCCCcEeeCCCCCEEeHHHh--CC-CCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC--------H
Confidence 3467777776643 666666 34 556776654433233333334455566666665 78777666432 5
Q ss_pred HHHHHHHHHcCCcE
Q 022336 238 SKARKLEGKIGIKV 251 (299)
Q Consensus 238 e~a~~~lk~LGI~v 251 (299)
+.+..+.++.|+++
T Consensus 76 ~~~~~~~~~~~~~~ 89 (154)
T PRK09437 76 EKLSRFAEKELLNF 89 (154)
T ss_pred HHHHHHHHHhCCCC
Confidence 66777788888753
No 442
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.81 E-value=3.8e+02 Score=29.41 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=48.5
Q ss_pred CCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCCC-cEEE---EcCCccccccccee
Q 022336 218 GHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSS-QLIM---VDMCRIVIFPGPVV 293 (299)
Q Consensus 218 GikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~Pe-Eiam---VGDrl~DI~gAn~~ 293 (299)
|.+++|+++.. ..+..+.+.||.+++... -|...=.++++.|.-... ++++ |||.=+|+-.|+.|
T Consensus 496 g~kiLVF~~~~---------~~l~~~a~~L~~~~I~G~--ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vv 564 (732)
T TIGR00603 496 GDKIIVFSDNV---------FALKEYAIKLGKPFIYGP--TSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVL 564 (732)
T ss_pred CCeEEEEeCCH---------HHHHHHHHHcCCceEECC--CCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEE
Confidence 77999999874 568888889998776543 333334577787753322 4443 67888899999999
Q ss_pred eee
Q 022336 294 IFL 296 (299)
Q Consensus 294 ~~~ 296 (299)
|.+
T Consensus 565 I~~ 567 (732)
T TIGR00603 565 IQI 567 (732)
T ss_pred EEe
Confidence 975
No 443
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=28.74 E-value=3e+02 Score=21.86 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccC
Q 022336 207 SSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRV 256 (299)
Q Consensus 207 ~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~ 256 (299)
..++.++.+. +.+++|+-|+......+......+.+.+.++.+++.-+.
T Consensus 91 ~~~~~~~~~~-~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa 139 (158)
T cd01879 91 LYLTLQLLEL-GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSA 139 (158)
T ss_pred HHHHHHHHHc-CCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEc
Confidence 3455566664 889999999985532222222345666677877665443
No 444
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=28.66 E-value=2.7e+02 Score=21.38 Aligned_cols=66 Identities=6% Similarity=0.035 Sum_probs=37.9
Q ss_pred CCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHH-HHHHHHhCCCCCcEEEEcCCc
Q 022336 218 GHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTA-EEIEKHFGCQSSQLIMVDMCR 284 (299)
Q Consensus 218 GikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~l-e~alk~lGi~PeEiamVGDrl 284 (299)
+.+|+|+|-+.-...+=+.-..++.+++.+|+++......+- +.+ .++.+..|..--=.++||++.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi~g~~ 73 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYVNGEL 73 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEECCEE
Confidence 358888876420001112346889999999998655433222 333 344444465444567888764
No 445
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=28.66 E-value=2.9e+02 Score=26.49 Aligned_cols=14 Identities=14% Similarity=0.359 Sum_probs=6.3
Q ss_pred HHHHHHHhCCCCCc
Q 022336 263 AEEIEKHFGCQSSQ 276 (299)
Q Consensus 263 le~alk~lGi~PeE 276 (299)
+.++++.++.+..+
T Consensus 80 ~~Ev~~~l~~~~~~ 93 (247)
T COG1212 80 LAEVVEKLGLPDDE 93 (247)
T ss_pred HHHHHHhcCCCcce
Confidence 44444444444333
No 446
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=28.52 E-value=3.3e+02 Score=25.09 Aligned_cols=72 Identities=13% Similarity=0.159 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCCCCCCcc-HHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCCCcEEEEcC
Q 022336 206 LSSSIEQCKSVFGHDIAVFSNSAGLYEYDND-ASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDM 282 (299)
Q Consensus 206 v~e~L~~Lke~fGikVaIVSNnaGs~~~d~~-~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~PeEiamVGD 282 (299)
+..|+..+... +++++||=|+..+...... .+.++.+ +..|.+++.-+.+.. .+++++.+.+ ...-++++|-
T Consensus 56 l~r~l~~~~~~-~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~v~~~SAktg-~gi~eLf~~l--~~~~~~~~G~ 128 (245)
T TIGR00157 56 LDRFLVVAEAQ-NIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQVLMTSSKNQ-DGLKELIEAL--QNRISVFAGQ 128 (245)
T ss_pred HHHHHHHHHHC-CCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCeEEEEecCCc-hhHHHHHhhh--cCCEEEEECC
Confidence 45566655554 7888888888743210000 1122222 346766665554443 2344444433 2345666664
No 447
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=28.52 E-value=5e+02 Score=25.65 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=50.1
Q ss_pred cEEEEeccCeeecCCCcccCchHH-----HHHH-HHHHhCCCcE---EEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE-
Q 022336 184 KGVVFDKDNTLTAPYSLTLWGPLS-----SSIE-QCKSVFGHDI---AVFSNSAGLYEYDNDASKARKLEGKIGIKVIR- 253 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~~~l~Pgv~-----e~L~-~Lke~fGikV---aIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~- 253 (299)
+.|-+...+|+. .....+||.. ..++ .+.+ .|.++ .-+|.-+ +.+..+.+.+.+.-.++.
T Consensus 312 ~~i~l~~~d~vi--~s~~~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~h~SgHa-------~~~dl~~~i~~~~Pk~~ip 381 (422)
T TIGR00649 312 EQIRIRKGDTVV--FSAPPIPGNENIAVSILLDIRLNE-VGARVIKRIHVSGHA-------SQEDHKLLLRLLKPKYIIP 381 (422)
T ss_pred CcEEeCCCCEEE--EECCCCCcHHHHHHHHHHHHHHHh-cCCEEEeceEecCCC-------CHHHHHHHHHHhCCCEEEe
Confidence 444445545444 2233445433 2344 3444 37765 2344443 477888888877755443
Q ss_pred -ccCCCCHHHHHHHHHHhCCCCCcEEEE--cCCc
Q 022336 254 -HRVKKPAGTAEEIEKHFGCQSSQLIMV--DMCR 284 (299)
Q Consensus 254 -ha~KKP~p~le~alk~lGi~PeEiamV--GDrl 284 (299)
|+...-...+.++++..|+.++++++. ||-+
T Consensus 382 vHge~~~~~~~~~~a~~~g~~~~~~~~~~nG~~~ 415 (422)
T TIGR00649 382 VHGEYRMLINHTKLAEEEGYPGENIFILRNGDVL 415 (422)
T ss_pred cCCcHHHHHHHHHHHHHcCCCcccEEEecCCcEE
Confidence 442111123566778889999998877 6643
No 448
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=28.51 E-value=1.2e+02 Score=29.25 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=19.7
Q ss_pred ccCchHHHHHHHHHHhCCCcEEEEeC
Q 022336 201 TLWGPLSSSIEQCKSVFGHDIAVFSN 226 (299)
Q Consensus 201 ~l~Pgv~e~L~~Lke~fGikVaIVSN 226 (299)
+-.|...+++++|++. |++|++..+
T Consensus 61 ~~FPdp~~mi~~L~~~-G~k~~~~~~ 85 (339)
T cd06603 61 KKFPDPEKMQEKLASK-GRKLVTIVD 85 (339)
T ss_pred ccCCCHHHHHHHHHHC-CCEEEEEec
Confidence 3456778899999997 999877665
No 449
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=27.85 E-value=1.5e+02 Score=28.88 Aligned_cols=19 Identities=5% Similarity=0.181 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCcEEEEeC
Q 022336 207 SSSIEQCKSVFGHDIAVFSN 226 (299)
Q Consensus 207 ~e~L~~Lke~fGikVaIVSN 226 (299)
.+.+++|++. |++|++..+
T Consensus 69 ~~mi~~L~~~-G~k~~~~i~ 87 (339)
T cd06602 69 PEFVDELHAN-GQHYVPILD 87 (339)
T ss_pred HHHHHHHHHC-CCEEEEEEe
Confidence 8888888886 888776654
No 450
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=27.60 E-value=3e+02 Score=22.69 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=4.9
Q ss_pred HHHHHHcCCcEE
Q 022336 241 RKLEGKIGIKVI 252 (299)
Q Consensus 241 ~~~lk~LGI~vI 252 (299)
+..++.+|+.|+
T Consensus 50 ~~~a~~~Gl~y~ 61 (110)
T PF04273_consen 50 AAAAEALGLQYV 61 (110)
T ss_dssp HHHHHHCT-EEE
T ss_pred HHHHHHcCCeEE
Confidence 344444555443
No 451
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=27.52 E-value=4.8e+02 Score=23.81 Aligned_cols=53 Identities=13% Similarity=0.076 Sum_probs=29.1
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCccc--CchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSLTL--WGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~~l--~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
+..|.+.|+.+|++|.+-.-..-..... ..+...+.+.|.+. |. +|+++++..
T Consensus 134 ~~~l~~~~iPvV~v~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~-G~r~I~~i~~~~ 189 (328)
T PRK11303 134 YQRLQNDGLPIIALDRALDREHFTSVVSDDQDDAEMLAESLLKF-PAESILLLGALP 189 (328)
T ss_pred HHHHHhcCCCEEEECCCCCCCCCCEEEeCCHHHHHHHHHHHHHC-CCCeEEEEeCcc
Confidence 3566678999998886421000000111 12445556667665 65 588887654
No 452
>PRK13186 lpxC UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Reviewed
Probab=27.52 E-value=2e+02 Score=28.13 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHHHHHcCC-------cEEEEeccCeeecCCCcccCc----hHHHHHHHHHHhCCCcE--EEEeCCCC
Q 022336 175 WAELQRRGF-------KGVVFDKDNTLTAPYSLTLWG----PLSSSIEQCKSVFGHDI--AVFSNSAG 229 (299)
Q Consensus 175 ~~~Lk~~GI-------RaLVlD~DNTLT~p~~~~l~P----gv~e~L~~Lke~fGikV--aIVSNnaG 229 (299)
.+.|+++|. .+||+|-||.|++++=....+ .+.+.+-.|.-. |.++ -|++.++|
T Consensus 195 ve~L~~~GL~~GgsleNalVi~~~~~lN~~gLRf~dE~vRHKiLDlIGDLaL~-G~pi~g~i~a~k~G 261 (295)
T PRK13186 195 VEYLRSAGLALGGSLDNAIVLDDDRVLNPEGLRFEDEFVRHKILDAIGDLYLL-GHPIIGHFTAYKSG 261 (295)
T ss_pred HHHHHHCCccccccccceEEECCCcccCCCCCcCCCcchhHHHHHHHHHHHhc-CCCceEEEEEECCC
Confidence 478888875 789999999999433222233 445666676664 7654 38888875
No 453
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=27.47 E-value=5.3e+02 Score=25.52 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCcEEEcc--CCCCHH---HHHHHHHHhC-CCCCcEEEEcCC
Q 022336 237 ASKARKLEGKIGIKVIRHR--VKKPAG---TAEEIEKHFG-CQSSQLIMVDMC 283 (299)
Q Consensus 237 ~e~a~~~lk~LGI~vI~ha--~KKP~p---~le~alk~lG-i~PeEiamVGDr 283 (299)
.+.+..+++.=++|++-.= .--|-. .+..+.+++| +.--.++||||.
T Consensus 110 ~~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDg 162 (310)
T COG0078 110 HETLEELAKYSGVPVINGLTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDG 162 (310)
T ss_pred HHHHHHHHHhCCCceEcccccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCc
Confidence 5677888888888877421 123332 2678888898 788899999998
No 454
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=27.45 E-value=4e+02 Score=23.12 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=35.3
Q ss_pred EEEEeCC-CCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCC----CCCcEEEEcCCc
Q 022336 221 IAVFSNS-AGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGC----QSSQLIMVDMCR 284 (299)
Q Consensus 221 VaIVSNn-aGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi----~PeEiamVGDrl 284 (299)
|.|.|.+ .|+.+.-++-.+++.+++.++|++.......-....+++.+.+|. ..==.++||+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~ 70 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRY 70 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEE
Confidence 4555555 344433445678999999999876543322211223455555554 233357777754
No 455
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=27.45 E-value=3.2e+02 Score=25.47 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=32.4
Q ss_pred HHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
...|++.|.| + -++..+.+++.+.++.+++. |+ .+.|.||..
T Consensus 53 ~~~gi~~I~~------t-GGEPll~~~l~~iv~~l~~~-g~~~v~i~TNG~ 95 (302)
T TIGR02668 53 SEFGVRKVKI------T-GGEPLLRKDLIEIIRRIKDY-GIKDVSMTTNGI 95 (302)
T ss_pred HHcCCCEEEE------E-CcccccccCHHHHHHHHHhC-CCceEEEEcCch
Confidence 3567877654 5 47777788899999998886 88 899999964
No 456
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=27.38 E-value=2.1e+02 Score=27.40 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHcCCcEEEEeccCeeecCC-----CcccCchHHHHHHHHHHhCCCcEEEEe---CCCCCCCCCccHHHHHHHHHHc
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPY-----SLTLWGPLSSSIEQCKSVFGHDIAVFS---NSAGLYEYDNDASKARKLEGKI 247 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~-----~~~l~Pgv~e~L~~Lke~fGikVaIVS---NnaGs~~~d~~~e~a~~~lk~L 247 (299)
+.|++.|+..|-+.+||.--.-+ ....++.+.+.++.+++. |+++.|.+ ... . ..-+.+..+..++
T Consensus 99 ~~L~~~g~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~-g~~v~v~~vv~~~N----~-~~l~~~~~~~~~l 172 (358)
T TIGR02109 99 DALADAGLDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAA-GLPLTLNFVIHRHN----I-DQIPEIIELAIEL 172 (358)
T ss_pred HHHHhCCCCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhC-CCceEEEEEeccCC----H-HHHHHHHHHHHHc
Confidence 56778899999999999742111 111345567778888885 88765433 222 0 0123445566778
Q ss_pred CCcEE
Q 022336 248 GIKVI 252 (299)
Q Consensus 248 GI~vI 252 (299)
|+..+
T Consensus 173 g~~~i 177 (358)
T TIGR02109 173 GADRV 177 (358)
T ss_pred CCCEE
Confidence 87643
No 457
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.31 E-value=4.8e+02 Score=23.80 Aligned_cols=18 Identities=11% Similarity=0.034 Sum_probs=13.7
Q ss_pred HHHHHHcCCcEEEEeccC
Q 022336 175 WAELQRRGFKGVVFDKDN 192 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DN 192 (299)
.+.+++.|+.+|++|.+-
T Consensus 75 ~~~~~~~giPvV~~~~~~ 92 (305)
T cd06324 75 LRLAEGAGVKLFLVNSGL 92 (305)
T ss_pred HHHHHhCCCeEEEEecCC
Confidence 456778899999998653
No 458
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=27.09 E-value=3.2e+02 Score=27.51 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=47.9
Q ss_pred CCCcccCchHHHHHHHHHHhCCC-cEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHH---HHHHHHHh-C
Q 022336 197 PYSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGT---AEEIEKHF-G 271 (299)
Q Consensus 197 p~~~~l~Pgv~e~L~~Lke~fGi-kVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~---le~alk~l-G 271 (299)
|-...+..+..+.+.+..+..|. ++.|||-.. +.+. ...+.+...++.-||.+..+..-.|.|. ++++++.+ +
T Consensus 7 p~~i~fG~g~l~~l~~~~~~~g~~r~liVTd~~-~~~~-g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~ 84 (377)
T COG1454 7 PTEILFGRGSLKELGEEVKRLGAKRALIVTDRG-LAKL-GLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVARE 84 (377)
T ss_pred CceEEecCChHHHHHHHHHhcCCCceEEEECCc-cccc-hhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 34445566777777766655574 799999875 2110 0123444444555666554444455552 55555554 4
Q ss_pred CCCCcEEEEcC
Q 022336 272 CQSSQLIMVDM 282 (299)
Q Consensus 272 i~PeEiamVGD 282 (299)
.+++-++-+|=
T Consensus 85 ~~~D~iIalGG 95 (377)
T COG1454 85 FGPDTIIALGG 95 (377)
T ss_pred cCCCEEEEeCC
Confidence 67788888874
No 459
>COG1467 PRI1 Eukaryotic-type DNA primase, catalytic (small) subunit [DNA replication, recombination, and repair]
Probab=26.94 E-value=74 Score=31.58 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=31.0
Q ss_pred cEEEEeccCeeecCCCc----ccC----c---hHHHHH-HHHHHhCCCc--EEEEeCCCCCC
Q 022336 184 KGVVFDKDNTLTAPYSL----TLW----G---PLSSSI-EQCKSVFGHD--IAVFSNSAGLY 231 (299)
Q Consensus 184 RaLVlD~DNTLT~p~~~----~l~----P---gv~e~L-~~Lke~fGik--VaIVSNnaGs~ 231 (299)
.-+|||+|.+-. |... .+- . ++...+ ..|.+.||++ .++.|++.|..
T Consensus 94 ~eLVFDIDad~l-p~~~~~~~~v~~~c~~~~~e~~~l~~~~L~~DfGf~di~ivFSG~RGyH 154 (341)
T COG1467 94 AELVFDIDADHL-PERRCDKDSVCKMCLEDKKEAVRLLNDFLREDFGFKDIKIVFSGRRGYH 154 (341)
T ss_pred hhheEecccccC-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCceE
Confidence 669999999998 4433 111 1 111222 3477789998 89999998754
No 460
>PRK09492 treR trehalose repressor; Provisional
Probab=26.84 E-value=4.8e+02 Score=23.63 Aligned_cols=51 Identities=20% Similarity=0.129 Sum_probs=30.3
Q ss_pred CCHHHHHHcCCcEEEEeccCeeecCCCccc--CchHHHHHHHHHHhCCC-cEEEEeC
Q 022336 173 IDWAELQRRGFKGVVFDKDNTLTAPYSLTL--WGPLSSSIEQCKSVFGH-DIAVFSN 226 (299)
Q Consensus 173 Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l--~Pgv~e~L~~Lke~fGi-kVaIVSN 226 (299)
.+.+.|+..++..|++|.|.-- -..+.. ..+...+.+.|.+. |. +|++++.
T Consensus 130 ~~~~~l~~~~~pvv~i~~~~~~--~~~V~~D~~~~~~~a~~~L~~~-G~~~I~~i~~ 183 (315)
T PRK09492 130 ITEEMLAPWQDKLVLLARDAKG--FSSVCYDDEGAIKLLMQRLYDQ-GHRHISYLGV 183 (315)
T ss_pred ccHHHHHhcCCCEEEEeccCCC--CcEEEECcHHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 3456677778888888875210 011111 23455667777776 76 6888864
No 461
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=26.71 E-value=63 Score=34.74 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=52.9
Q ss_pred ccccCCcCCCCHHHHHHcCCc-EEEEeccCeeec-------------------------------------CCCcccCch
Q 022336 164 HVTVPDIRYIDWAELQRRGFK-GVVFDKDNTLTA-------------------------------------PYSLTLWGP 205 (299)
Q Consensus 164 ~~~v~sI~~Id~~~Lk~~GIR-aLVlD~DNTLT~-------------------------------------p~~~~l~Pg 205 (299)
+..+..+..|.-........+ .+|+|+|.||.- ++-+.+-|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~ 205 (635)
T KOG0323|consen 126 NEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLSETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPF 205 (635)
T ss_pred hhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhhhhhhhcccccccccccccceeecccCCCceEEEEeCcc
Confidence 333444555666555556666 799999999740 011224588
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCC
Q 022336 206 LSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGI 249 (299)
Q Consensus 206 v~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI 249 (299)
+.++|+++.+. +.+-|.|=.. +..|..+++-+.-
T Consensus 206 ~~efL~~~skl--femhVyTmg~--------R~YA~~i~~liDP 239 (635)
T KOG0323|consen 206 VHEFLKEANKL--FEMHVYTMGT--------RDYALEIAKLIDP 239 (635)
T ss_pred HHHHHHHHHhh--ceeEEEeccc--------hHHHHHHHHHhCC
Confidence 89999999886 7899998876 7788888887753
No 462
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.54 E-value=2.6e+02 Score=25.19 Aligned_cols=63 Identities=19% Similarity=0.109 Sum_probs=49.7
Q ss_pred HHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCC-cEEEEeCCCCCCCCCccHHHHHHHHHHcCCc
Q 022336 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSAGLYEYDNDASKARKLEGKIGIK 250 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGi-kVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~ 250 (299)
.-.|-|+|+|-+=|-.|+.=+..=-|+..+...++++. |+ .|++||=+. .--..+..+..|..
T Consensus 34 lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~k-GVD~I~cVSVND--------~FVm~AWak~~g~~ 97 (165)
T COG0678 34 LFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAK-GVDEIYCVSVND--------AFVMNAWAKSQGGE 97 (165)
T ss_pred hcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHc-CCceEEEEEeCc--------HHHHHHHHHhcCCC
Confidence 35799999999999999655655679999999999987 98 588888775 34556777777764
No 463
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=26.46 E-value=60 Score=30.98 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=26.7
Q ss_pred CcEEEEeccCe-eecCCCc-ccC----chHHHHHHHHHHhCCCcEEEEeCCCCC
Q 022336 183 FKGVVFDKDNT-LTAPYSL-TLW----GPLSSSIEQCKSVFGHDIAVFSNSAGL 230 (299)
Q Consensus 183 IRaLVlD~DNT-LT~p~~~-~l~----Pgv~e~L~~Lke~fGikVaIVSNnaGs 230 (299)
.|-||+=+=+- || ..+. .+. ..+.+.+.+|++. |.+|+|||..++.
T Consensus 8 ~~~iVvKiGss~lt-~~~~~~~~~~~l~~l~~~i~~l~~~-g~~vilVssGAv~ 59 (284)
T cd04256 8 AKRIVVKLGSAVVT-REDECGLALGRLASIVEQVSELQSQ-GREVILVTSGAVA 59 (284)
T ss_pred CCEEEEEeCchhcc-CCCCCccCHHHHHHHHHHHHHHHHC-CCEEEEEeeCcHH
Confidence 35566666332 44 2222 333 2344556667776 9999988888744
No 464
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.34 E-value=1.9e+02 Score=24.88 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCCC
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSAG 229 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNnaG 229 (299)
.+++.+.++.+++. |.+++.+|++.+
T Consensus 88 t~~~i~~~~~ak~~-g~~iI~IT~~~~ 113 (179)
T cd05005 88 TSSVVNAAEKAKKA-GAKVVLITSNPD 113 (179)
T ss_pred cHHHHHHHHHHHHC-CCeEEEEECCCC
Confidence 46778889999997 999999999874
No 465
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=26.34 E-value=3.2e+02 Score=29.04 Aligned_cols=88 Identities=24% Similarity=0.218 Sum_probs=52.1
Q ss_pred eeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE--EccCCCCH---HHHHHHH
Q 022336 193 TLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI--RHRVKKPA---GTAEEIE 267 (299)
Q Consensus 193 TLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI--~ha~KKP~---p~le~al 267 (299)
|+| ++...-+..+.+|+.+.++.++++.+.+=... .......++..|++.+ +.+-++-. ..++..+
T Consensus 403 Tit-~~~~id~~~I~ew~~~~~~~~~i~~v~~D~~g--------~~~~~~~l~~~g~~lv~i~Q~~~~l~~~~k~~e~~~ 473 (546)
T COG4626 403 TIT-RRDLIDYAEIVEWFMEIREKFLIKLVGFDPSG--------AGEFRDALAEAGIKVVGIPQGFKKLSGAIKTIERKL 473 (546)
T ss_pred EEe-CCCccCHHHHHHHHHHHHHhCCccEEeecccc--------hHHHHHHHHhCCCceeeccchhhhhCchhHHHHHHH
Confidence 344 44455567889999998887777766665553 2345555777787644 33322111 2233333
Q ss_pred HHhCCCCCcEEEEcCCcccccccceee
Q 022336 268 KHFGCQSSQLIMVDMCRIVIFPGPVVI 294 (299)
Q Consensus 268 k~lGi~PeEiamVGDrl~DI~gAn~~~ 294 (299)
....+++.||.+..=.-+|+++
T Consensus 474 -----~~g~i~~~dnp~m~wcv~Nv~~ 495 (546)
T COG4626 474 -----AEGVLVHGDNPLMEWCVGNVVV 495 (546)
T ss_pred -----hcCcEEECCCcHHhHhhccEEE
Confidence 2567778888777755566554
No 466
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=26.29 E-value=49 Score=28.85 Aligned_cols=48 Identities=23% Similarity=0.242 Sum_probs=21.7
Q ss_pred EEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCCCcEE
Q 022336 221 IAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSSQLI 278 (299)
Q Consensus 221 VaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~PeEia 278 (299)
|+-+|...|++ ...-++.+++.||++++... -+.++++++|++++.+-
T Consensus 1 IITIsr~~Gsg----g~~Ia~~LA~~Lg~~~~d~~------ii~~~a~~~~~~~~~~~ 48 (179)
T PF13189_consen 1 IITISRQYGSG----GREIAERLAEKLGYPYYDRE------IIEEAAKESGISEEEFE 48 (179)
T ss_dssp EEEEEE-TTSS----HHHHHHHHHHHCT--EE-HH------HHHHCT-----------
T ss_pred CEEECCCCCCC----hHHHHHHHHHHcCCccCCHH------HHHHHHHHccCCHHHHH
Confidence 45566666665 25678889999999887431 25556666666555543
No 467
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.15 E-value=4.5e+02 Score=23.01 Aligned_cols=51 Identities=14% Similarity=0.093 Sum_probs=29.2
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcc--cCchHHHHHHHHHHhCCC-cEEEEeCC
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLT--LWGPLSSSIEQCKSVFGH-DIAVFSNS 227 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~--l~Pgv~e~L~~Lke~fGi-kVaIVSNn 227 (299)
..+...|+.+|++|.+-.-....... -......+.+.|.+. |. +++++++.
T Consensus 71 ~~~~~~~iPvV~~~~~~~~~~~~~v~~d~~~~g~~a~~~L~~~-g~~~i~~~~~~ 124 (263)
T cd06280 71 LAELRLSFPVVLIDRAGPAGRVDAVVLDNRAAARTLVEHLVAQ-GYRRIGGLFGN 124 (263)
T ss_pred HHHHhcCCCEEEECCCCCCCCCCEEEECcHHHHHHHHHHHHHC-CCceEEEEeCC
Confidence 44567899999999752111001111 123444555667775 76 68888764
No 468
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=26.06 E-value=4.4e+02 Score=23.90 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=33.6
Q ss_pred HcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE
Q 022336 180 RRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI 252 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI 252 (299)
+.|+..+++|+++. + ..-.+.+.+++.++++. |+.. |+++..- .+....+.+.+...+|++.+
T Consensus 54 ~lgip~~~i~~~~~-~----~~~~~~l~~~l~~~~~~-g~~~-vv~G~i~---sd~~~~~~e~v~~~~gl~~~ 116 (218)
T TIGR03679 54 ALGIPLVKIETSGE-K----EKEVEDLKGALKELKRE-GVEG-IVTGAIA---SRYQKSRIERICEELGLKVF 116 (218)
T ss_pred HhCCCEEEEECCCC-C----hHHHHHHHHHHHHHHHc-CCCE-EEECCcc---cHhHHHHHHHHHHhCCCeEE
Confidence 46888888888752 1 11112355667777765 7763 3332221 12223455566667776554
No 469
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=26.01 E-value=2.2e+02 Score=27.30 Aligned_cols=71 Identities=8% Similarity=0.153 Sum_probs=42.0
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCc-----ccCchHHHHHHHHHHhCCCcEEEEe---CCCCCCCCCccHHHHHHHHHHc
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSL-----TLWGPLSSSIEQCKSVFGHDIAVFS---NSAGLYEYDNDASKARKLEGKI 247 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~-----~l~Pgv~e~L~~Lke~fGikVaIVS---NnaGs~~~d~~~e~a~~~lk~L 247 (299)
+.|+..|+..|.+.+||.- ..++. ..++.+.+.++.+++. |+++.|.+ ++.. .+ .-..+-.+++++
T Consensus 117 ~~l~~~~~~~i~VSLDG~~-e~hd~~~~~~g~f~~~l~~I~~l~~~-G~~v~v~~tv~~~~n---~~-ei~~~~~~~~~l 190 (318)
T TIGR03470 117 DKFEPSPYLTFSVHLDGLR-EHHDASVCREGVFDRAVEAIREAKAR-GFRVTTNTTLFNDTD---PE-EVAEFFDYLTDL 190 (318)
T ss_pred HHHHhCCCcEEEEEEecCc-hhhchhhcCCCcHHHHHHHHHHHHHC-CCcEEEEEEEeCCCC---HH-HHHHHHHHHHHc
Confidence 4567778888999999952 12211 2345677888889886 88866632 3220 01 112333455678
Q ss_pred CCcEE
Q 022336 248 GIKVI 252 (299)
Q Consensus 248 GI~vI 252 (299)
|+..+
T Consensus 191 Gv~~i 195 (318)
T TIGR03470 191 GVDGM 195 (318)
T ss_pred CCCEE
Confidence 87533
No 470
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=25.70 E-value=3.2e+02 Score=26.23 Aligned_cols=126 Identities=18% Similarity=0.222 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhcCCCCcCCccccCCcCC-----CCHH--HHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHh
Q 022336 144 VEGIVSSTVVFAKDRHLALPHVTVPDIRY-----IDWA--ELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSV 216 (299)
Q Consensus 144 ~~gi~~~~~~~~~~p~ll~P~~~v~sI~~-----Id~~--~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~ 216 (299)
.+||..++.+ +.+| +|..+...+.+ +.++ .-.+.|+++-+ ++- -+-..++|+..+.|++|.+.
T Consensus 22 ~sGI~~Vit~-AhdP---~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~v-----avG-vHPr~iP~e~~~~l~~L~~~ 91 (254)
T COG1099 22 LSGIREVITL-AHDP---YPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKV-----AVG-VHPRAIPPELEEVLEELEEL 91 (254)
T ss_pred HhChhhhhhc-ccCC---CCcccHHHHHHHHHHHHccchhhHHhhCceeeE-----Eec-cCCCCCCchHHHHHHHHHhh
Confidence 4678777774 6677 66666554322 2232 22356777543 121 23344667777888887763
Q ss_pred CCCcEEEEeCCCCCCCCCccHHHH----HHHHHHcCCcEEEcc--CCCCHH--HHHHHHHHhCCCCCcEEE
Q 022336 217 FGHDIAVFSNSAGLYEYDNDASKA----RKLEGKIGIKVIRHR--VKKPAG--TAEEIEKHFGCQSSQLIM 279 (299)
Q Consensus 217 fGikVaIVSNnaGs~~~d~~~e~a----~~~lk~LGI~vI~ha--~KKP~p--~le~alk~lGi~PeEiam 279 (299)
..-.=++.=+..|+.........+ -.+++.++++++.|. ..|+.. .+.+++...|++|+.+++
T Consensus 92 l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~e~t~~ildi~~~~~l~~~lvvI 162 (254)
T COG1099 92 LSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRNKKEATSKILDILIESGLKPSLVVI 162 (254)
T ss_pred cccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcchhHHHHHHHHHHHcCCChhheeh
Confidence 221122233444443222222211 235667899998873 334443 367788888999887654
No 471
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=25.53 E-value=98 Score=27.26 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=28.1
Q ss_pred cEEEEeccCe---eecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 184 KGVVFDKDNT---LTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 184 RaLVlD~DNT---LT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
..|++|++-+ .+ .........+.++++++++. |.+++|.||..
T Consensus 88 ~~i~lDiE~~~~~~~-~~~~~~~~~~~~f~~~~~~~-G~~~~iYt~~~ 133 (196)
T cd06416 88 GTVWIDIEQNPCQWS-SDVASNCQFLQELVSAAKAL-GLKVGIYSSQY 133 (196)
T ss_pred eEEEEEEecCCCCCc-CCHHHHHHHHHHHHHHHHHh-CCeEEEEcCcc
Confidence 4578999854 11 11112223456777778887 99999999985
No 472
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=25.52 E-value=4.6e+02 Score=22.94 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=41.8
Q ss_pred ccCCcCCCCHH-------HHHHcCCcEEEEec-cCeeecCCCcccCchHHHHHHHHHHhCC--CcEEEEeCCCCCCCCCc
Q 022336 166 TVPDIRYIDWA-------ELQRRGFKGVVFDK-DNTLTAPYSLTLWGPLSSSIEQCKSVFG--HDIAVFSNSAGLYEYDN 235 (299)
Q Consensus 166 ~v~sI~~Id~~-------~Lk~~GIRaLVlD~-DNTLT~p~~~~l~Pgv~e~L~~Lke~fG--ikVaIVSNnaGs~~~d~ 235 (299)
..+|+...|+. .+.+.|++.|-||. ||... +.. .+ ..+.++++++... ..+.+++|..
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~-~~~-~~---~~~~~~~i~~~~~~~~~v~l~v~d~------- 73 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFV-PNL-TI---GPPVVEAIRKVTKLPLDVHLMVENP------- 73 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcC-CCc-Cc---CHHHHHHHHhcCCCcEEEEeeeCCH-------
Confidence 44667777753 44568999999974 55544 211 12 2345555555333 3366888875
Q ss_pred cHHHHHHHHHHcCCcE
Q 022336 236 DASKARKLEGKIGIKV 251 (299)
Q Consensus 236 ~~e~a~~~lk~LGI~v 251 (299)
.+.++.. .+.|+..
T Consensus 74 -~~~i~~~-~~~g~d~ 87 (220)
T PRK05581 74 -DRYVPDF-AKAGADI 87 (220)
T ss_pred -HHHHHHH-HHcCCCE
Confidence 4455444 4777764
No 473
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=25.33 E-value=2.9e+02 Score=26.88 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=49.9
Q ss_pred CCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCC--------CCcc----HHHHHHHHHHcCC
Q 022336 182 GFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYE--------YDND----ASKARKLEGKIGI 249 (299)
Q Consensus 182 GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~--------~d~~----~e~a~~~lk~LGI 249 (299)
.+.+|+ +-|.-+ +...=.|=+....+.|+++ |++++|+|-.-|... .+.+ .++.-.+++.+++
T Consensus 27 ~vPVIs--VGNitv--GGTGKTP~v~~La~~l~~~-G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~ 101 (311)
T TIGR00682 27 PVPVVI--VGNLSV--GGTGKTPVVVWLAELLKDR-GLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHA 101 (311)
T ss_pred CCCEEE--Eecccc--CCcChHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCC
Confidence 445444 445443 4444455555555667776 999999997654321 0001 1334445555677
Q ss_pred cEEEccCCCCHHHHHHHHHHhCCCCCcEEEEcCCc
Q 022336 250 KVIRHRVKKPAGTAEEIEKHFGCQSSQLIMVDMCR 284 (299)
Q Consensus 250 ~vI~ha~KKP~p~le~alk~lGi~PeEiamVGDrl 284 (299)
+++... +...+.+.++++++ -++++..|..
T Consensus 102 ~V~V~~--dR~~a~~~~~~~~~---~dviilDDGf 131 (311)
T TIGR00682 102 TVVASK--DRKDAILLILEQLD---PDVIILDDGL 131 (311)
T ss_pred cEEEeC--hHHHHHHHHHhcCC---CCEEEECCCC
Confidence 766542 22224455555443 4577777764
No 474
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=25.32 E-value=3.9e+02 Score=27.09 Aligned_cols=71 Identities=18% Similarity=0.072 Sum_probs=46.9
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCCC
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSS 275 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~Pe 275 (299)
...+.+...-.++.|++. |-.|.+.+.++.+. .+.+...+...||+++.....-+...+..+.+.++..|+
T Consensus 38 ~~hl~~~Ta~l~~~L~~~-GA~v~~~~~np~st-----qd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~p~ 108 (406)
T TIGR00936 38 CLHVTVETAVLIETLVAG-GAEVAWTSCNPLST-----QDDVAAALAKAGIPVFAWRGETNEEYYWAIEQVLDHEPN 108 (406)
T ss_pred EEechHHHHHHHHHHHHc-CCEEEEEccCCccc-----cHHHHHHHHhCCceEEEecCCCHHHHHHHHHHHhcCCCC
Confidence 345667788888888886 99999999988554 345555556789998854333443333444445566664
No 475
>PRK14012 cysteine desulfurase; Provisional
Probab=25.25 E-value=2.5e+02 Score=27.11 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC---CCCCCCccHHHHHHHHHHcCCcE
Q 022336 175 WAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA---GLYEYDNDASKARKLEGKIGIKV 251 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna---Gs~~~d~~~e~a~~~lk~LGI~v 251 (299)
+..++..|++.+.+|.|.+.. +.+ +.|+++... ..+++++++-. |.. .+-+.+..++++.|+.+
T Consensus 111 ~~~~~~~g~~~~~v~~~~~g~------~d~---~~l~~~i~~-~t~lv~~~~~~n~tG~~---~~~~~I~~la~~~g~~v 177 (404)
T PRK14012 111 CRQLEREGFEVTYLDPQSNGI------IDL---EKLEAAMRD-DTILVSIMHVNNEIGVI---QDIAAIGEICRERGIIF 177 (404)
T ss_pred HHHHHhCCCEEEEEccCCCCc------CCH---HHHHHhcCC-CCEEEEEECcCCCccch---hhHHHHHHHHHHcCCEE
Confidence 455666899999998874322 112 223333222 45677776543 322 12456677778888765
Q ss_pred EE
Q 022336 252 IR 253 (299)
Q Consensus 252 I~ 253 (299)
+.
T Consensus 178 iv 179 (404)
T PRK14012 178 HV 179 (404)
T ss_pred EE
Confidence 54
No 476
>PF12846 AAA_10: AAA-like domain
Probab=25.14 E-value=4.9e+02 Score=23.13 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=41.0
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHH-----HHHHHHcCCcEEEccCCCCHHHHHHHHHHhCCCCC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKA-----RKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGCQSS 275 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a-----~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi~Pe 275 (299)
....+.+++++.++. |..++++|-+. .... ..+.+..+..++.. ...+ ....+.+.+|+++.
T Consensus 238 ~~~~~~~~~~~~Rk~-g~~~~l~tQ~~--------~~l~~~~~~~~i~~n~~~~i~~~-~~~~--~~~~l~~~~gl~~~ 304 (304)
T PF12846_consen 238 GAEFLDELLREGRKY-GVGLILATQSP--------SDLPKSPIEDAILANCNTKIIFR-LEDS--DDAELAELFGLTPA 304 (304)
T ss_pred hhhhhhHHHHHHHhc-CCEEEEeeCCH--------HHHhccchHHHHHHhCCcEEEec-CChH--HHHHHHHHcCcCCC
Confidence 334556777787874 99999999987 2333 67777777655543 2232 33348889998763
No 477
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=25.09 E-value=54 Score=32.46 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=26.5
Q ss_pred HHHcCCcEEEEeccCeeecCCCc-ccCchHHH-HHHHHHHhCCCc
Q 022336 178 LQRRGFKGVVFDKDNTLTAPYSL-TLWGPLSS-SIEQCKSVFGHD 220 (299)
Q Consensus 178 Lk~~GIRaLVlD~DNTLT~p~~~-~l~Pgv~e-~L~~Lke~fGik 220 (299)
|.-..|+++-||.|.||+ .|.. .+..-+.+ ..+.|.+.+|++
T Consensus 7 l~l~~i~~~GFDmDyTLa-~Y~~~~~e~L~y~~~~~~LV~~~gYp 50 (343)
T TIGR02244 7 LNLEKIQVFGFDMDYTLA-QYKSPELEALIYDLAKERLVKRFGYP 50 (343)
T ss_pred cccccCCEEEECcccccc-ccChHHHHHHHHHHHHHHHHHhcCCC
Confidence 445789999999999999 5554 33322222 334455544665
No 478
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=24.88 E-value=4.2e+02 Score=24.84 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=50.3
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEcc
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHR 255 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha 255 (299)
+.|++.|++++.+|.|+.- ++.++.+. +..+++..=- |.. .. ...+..+++.+|++++..+
T Consensus 29 ~aL~~~g~~~~~~~~~~~~--------------~~~~l~~~-~~d~vf~~lh-G~~--ge-~~~i~~~le~~gip~~Gs~ 89 (296)
T PRK14569 29 DSLISQGYDAVGVDASGKE--------------LVAKLLEL-KPDKCFVALH-GED--GE-NGRVSALLEMLEIKHTSSS 89 (296)
T ss_pred HHHHHcCCEEEEEcCCchh--------------HHHHhhcc-CCCEEEEeCC-CCC--CC-ChHHHHHHHHcCCCeeCCC
Confidence 5788899999999987421 23344443 4554444322 211 11 1356778888999887432
Q ss_pred -------CCCCHHHHHHHHHHhCCCCCcEEEEcC
Q 022336 256 -------VKKPAGTAEEIEKHFGCQSSQLIMVDM 282 (299)
Q Consensus 256 -------~KKP~p~le~alk~lGi~PeEiamVGD 282 (299)
.-| ...+++++..|++--...++.|
T Consensus 90 ~~a~~l~~DK--~~~k~~l~~~gIptp~~~~~~~ 121 (296)
T PRK14569 90 MKSSVITMDK--MISKEILMHHRMPTPMAKFLTD 121 (296)
T ss_pred HHHHHHHHCH--HHHHHHHHHCCCCCCCeEEEch
Confidence 111 1246678888887666666655
No 479
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=24.83 E-value=1.5e+02 Score=28.36 Aligned_cols=24 Identities=4% Similarity=0.068 Sum_probs=17.4
Q ss_pred cCchHHHHHHHHHHhCCCcEEEEeC
Q 022336 202 LWGPLSSSIEQCKSVFGHDIAVFSN 226 (299)
Q Consensus 202 l~Pgv~e~L~~Lke~fGikVaIVSN 226 (299)
-.|...+++++|++. |+++++.-+
T Consensus 62 ~FPdp~~~i~~l~~~-g~k~~~~~~ 85 (317)
T cd06600 62 RFPEPKKLIDELHKR-NVKLVTIVD 85 (317)
T ss_pred cCCCHHHHHHHHHHC-CCEEEEEee
Confidence 356677888888887 888765543
No 480
>PLN02412 probable glutathione peroxidase
Probab=24.77 E-value=2.1e+02 Score=24.53 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=46.7
Q ss_pred CCccccCCcCC--CCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC-CCCCCCccHH
Q 022336 162 LPHVTVPDIRY--IDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA-GLYEYDNDAS 238 (299)
Q Consensus 162 ~P~~~v~sI~~--Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna-Gs~~~d~~~e 238 (299)
.|++..++... ++++.+ +| |.||+..=.+-. +....-.|.+.+..++.++. |+.|+-|+.+. +....+...+
T Consensus 9 ~pdf~l~d~~G~~v~l~~~--~g-k~vlv~f~a~~C-~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~ 83 (167)
T PLN02412 9 IYDFTVKDIGGNDVSLNQY--KG-KVLLIVNVASKC-GLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEE 83 (167)
T ss_pred CCceEEECCCCCEEeHHHh--CC-CEEEEEEeCCCC-CChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHH
Confidence 67777776655 555555 45 777776643333 33333456667777777775 88766665432 1001112223
Q ss_pred HHHHHHHHcCCc
Q 022336 239 KARKLEGKIGIK 250 (299)
Q Consensus 239 ~a~~~lk~LGI~ 250 (299)
..+.+.+.+|+.
T Consensus 84 ~~~~~~~~~~~~ 95 (167)
T PLN02412 84 IQQTVCTRFKAE 95 (167)
T ss_pred HHHHHHHccCCC
Confidence 345556777764
No 481
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=24.76 E-value=3.9e+02 Score=23.37 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=10.3
Q ss_pred HHHHHHHHhCCC-cEEEEeCC
Q 022336 208 SSIEQCKSVFGH-DIAVFSNS 227 (299)
Q Consensus 208 e~L~~Lke~fGi-kVaIVSNn 227 (299)
-.++.+.+. |+ +++|+++.
T Consensus 34 ~~l~~l~~~-gi~~i~vv~~~ 53 (229)
T cd02523 34 RQIETLKEA-GIDDIVIVTGY 53 (229)
T ss_pred HHHHHHHHC-CCceEEEEecc
Confidence 344555554 66 46666654
No 482
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=24.70 E-value=85 Score=28.70 Aligned_cols=36 Identities=6% Similarity=0.010 Sum_probs=28.5
Q ss_pred CeeecCCCcccCch-HHHHHHHHHHhCCCcEEEEeCCC
Q 022336 192 NTLTAPYSLTLWGP-LSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 192 NTLT~p~~~~l~Pg-v~e~L~~Lke~fGikVaIVSNna 228 (299)
|+-..-++..+.++ +.+.++.+++. |+.++|.||..
T Consensus 41 GVt~SGGEPllq~~fl~~l~~~~k~~-gi~~~leTnG~ 77 (213)
T PRK10076 41 GVTLSGGEVLMQAEFATRFLQRLRLW-GVSCAIETAGD 77 (213)
T ss_pred EEEEeCchHHcCHHHHHHHHHHHHHc-CCCEEEECCCC
Confidence 44444667777777 57889999997 99999999985
No 483
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=24.69 E-value=4.3e+02 Score=22.37 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHH
Q 022336 205 PLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKL 243 (299)
Q Consensus 205 gv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~ 243 (299)
.+.+.++++.+.-+..++|.|+..|.+++|...+.++.+
T Consensus 48 ~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~ 86 (152)
T cd00886 48 EIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPL 86 (152)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHH
Confidence 445666665441147899999888777767655544433
No 484
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=24.69 E-value=3.6e+02 Score=25.78 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=32.1
Q ss_pred HHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCC-cEEEEeCCC
Q 022336 179 QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGH-DIAVFSNSA 228 (299)
Q Consensus 179 k~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGi-kVaIVSNna 228 (299)
.+.|++.|.| | -++..+.+++.+.++.+++..|+ .+.|.||..
T Consensus 58 ~~~Gv~~I~~------t-GGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ 101 (329)
T PRK13361 58 TELGVRKIRL------T-GGEPLVRRGCDQLVARLGKLPGLEELSLTTNGS 101 (329)
T ss_pred HHCCCCEEEE------E-CcCCCccccHHHHHHHHHhCCCCceEEEEeChh
Confidence 3468887765 3 47777888999999998876334 689999964
No 485
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.63 E-value=4.1e+02 Score=24.29 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=49.0
Q ss_pred cCCcCCCCHH-------HHHHcCCcEEEEec-cCeeecCCCcccCchHHHHHHHHH-HhCCCcEEEEeCCCCCCCCCccH
Q 022336 167 VPDIRYIDWA-------ELQRRGFKGVVFDK-DNTLTAPYSLTLWGPLSSSIEQCK-SVFGHDIAVFSNSAGLYEYDNDA 237 (299)
Q Consensus 167 v~sI~~Id~~-------~Lk~~GIRaLVlD~-DNTLT~p~~~~l~Pgv~e~L~~Lk-e~fGikVaIVSNnaGs~~~d~~~ 237 (299)
.+||...|+. .|++.|+..+-+|+ ||..+ |+ ..+.+...++|++.- .. -+.+=+.++++ .
T Consensus 10 ~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fv-pn-~~~G~~~v~~lr~~~~~~-~lDvHLm~~~p--------~ 78 (228)
T PTZ00170 10 APSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFV-PN-LSFGPPVVKSLRKHLPNT-FLDCHLMVSNP--------E 78 (228)
T ss_pred ehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccC-CC-cCcCHHHHHHHHhcCCCC-CEEEEECCCCH--------H
Confidence 3677777754 45568999999996 89988 43 233444544444321 11 12344555554 3
Q ss_pred HHHHHHHHHcCCcEE-EccCCCCH-H-HHHHHHHHhCC
Q 022336 238 SKARKLEGKIGIKVI-RHRVKKPA-G-TAEEIEKHFGC 272 (299)
Q Consensus 238 e~a~~~lk~LGI~vI-~ha~KKP~-p-~le~alk~lGi 272 (299)
..+ ......|...+ .|....+. . ...+.++.+|.
T Consensus 79 ~~i-~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~ 115 (228)
T PTZ00170 79 KWV-DDFAKAGASQFTFHIEATEDDPKAVARKIREAGM 115 (228)
T ss_pred HHH-HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCC
Confidence 333 33344566543 34322222 1 23344455664
No 486
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=24.52 E-value=3.3e+02 Score=25.16 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHHHHcCCcEEEEeccCeee-cCCCccc--CchHHHHHHHHHHhCCC-c-EEEEeCCC
Q 022336 175 WAELQRRGFKGVVFDKDNTLT-APYSLTL--WGPLSSSIEQCKSVFGH-D-IAVFSNSA 228 (299)
Q Consensus 175 ~~~Lk~~GIRaLVlD~DNTLT-~p~~~~l--~Pgv~e~L~~Lke~fGi-k-VaIVSNna 228 (299)
+..+.+.|+..|++|...--. .-..+.. ..+..++.+.|.+. |. + |++++...
T Consensus 72 l~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~a~~~a~~~Li~~-Gh~~~I~~i~~~~ 129 (279)
T PF00532_consen 72 LRRLIKSGIPVVLIDRYIDNPEGVPSVYIDNYEAGYEATEYLIKK-GHRRPIAFIGGPE 129 (279)
T ss_dssp HHHHHHTTSEEEEESS-SCTTCTSCEEEEEHHHHHHHHHHHHHHT-TCCSTEEEEEEST
T ss_pred HHHHHHcCCCEEEEEeccCCcccCCEEEEcchHHHHHHHHHHHhc-ccCCeEEEEecCc
Confidence 456667799999999872111 0011111 24556777888887 76 7 88888765
No 487
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=24.51 E-value=4.3e+02 Score=22.26 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHhC--CCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCCC
Q 022336 204 GPLSSSIEQCKSVF--GHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKKP 259 (299)
Q Consensus 204 Pgv~e~L~~Lke~f--GikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KKP 259 (299)
..+.+|+.++.... +.+++|+-|+..+.. .....+.+..+.+.+|++++.-+.+..
T Consensus 89 ~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 147 (188)
T cd04125 89 ENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQS 147 (188)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 45556776665422 357899999874331 112345666777778887766554444
No 488
>TIGR00325 lpxC UDP-3-0-acyl N-acetylglucosamine deacetylase. UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli, LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability.
Probab=24.50 E-value=2.2e+02 Score=27.81 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=37.1
Q ss_pred CHHHHHHcCC-------cEEEEeccCeeecCCCccc-Cc----hHHHHHHHHHHhCCCcE-E-EEeCCCC
Q 022336 174 DWAELQRRGF-------KGVVFDKDNTLTAPYSLTL-WG----PLSSSIEQCKSVFGHDI-A-VFSNSAG 229 (299)
Q Consensus 174 d~~~Lk~~GI-------RaLVlD~DNTLT~p~~~~l-~P----gv~e~L~~Lke~fGikV-a-IVSNnaG 229 (299)
+.+.|+++|. .+||+|-||.|.+ ....+ .+ .+.+.+-.|.-. |.++ + |++.++|
T Consensus 193 eve~L~~~GLa~GgSL~NAiVi~~~~vlN~-~gLRf~dE~VRHKiLDlIGDL~L~-G~pi~g~~~a~k~G 260 (297)
T TIGR00325 193 DIEYLRSAGLIKGGSLDNAIVLDDYRILNE-DGLRFEDEFVRHKMLDAIGDLSML-GKNIIGHFTAYKSS 260 (297)
T ss_pred HHHHHHHCCccccccccceEEECCCcccCC-CCCcCCCcchhhHHHHHHhhHHHc-CCCceEEEEEECCc
Confidence 5578888875 7899999999994 33333 33 445667677664 8764 3 7777775
No 489
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=24.39 E-value=5.3e+02 Score=23.68 Aligned_cols=49 Identities=10% Similarity=-0.054 Sum_probs=25.4
Q ss_pred HHHHHcCCcEEEEecc--CeeecCCCccc--CchHHHHHHHHHHhCCC-cEEEEeCC
Q 022336 176 AELQRRGFKGVVFDKD--NTLTAPYSLTL--WGPLSSSIEQCKSVFGH-DIAVFSNS 227 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~D--NTLT~p~~~~l--~Pgv~e~L~~Lke~fGi-kVaIVSNn 227 (299)
+.+++.++.+|++|.+ +.-. ..... ..+...+.+.|.+. |. ++++++..
T Consensus 130 ~~l~~~~~pvV~~~~~~~~~~~--~~V~~D~~~~~~~a~~~l~~~-G~~~i~~i~~~ 183 (327)
T PRK10339 130 AAASALTDNICFIDFHEPGSGY--DAVDIDLARISKEIIDFYINQ-GVNRIGFIGGE 183 (327)
T ss_pred HHHHhcCCCEEEEeCCCCCCCC--CEEEECHHHHHHHHHHHHHHC-CCCeEEEeCCc
Confidence 4556667777777753 1100 01111 23334555666665 65 57777554
No 490
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=24.33 E-value=2.4e+02 Score=27.32 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=34.1
Q ss_pred CcccCchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEcc
Q 022336 199 SLTLWGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHR 255 (299)
Q Consensus 199 ~~~l~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha 255 (299)
...+..+..-.++.|++. |-.|.+.|.|+.+.+ +.+...+..-||+++...
T Consensus 49 cLHle~kTA~L~~tL~a~-GAeV~~~~sNplSTQ-----DdvaAAL~~~Gi~V~A~~ 99 (268)
T PF05221_consen 49 CLHLEAKTAVLAETLKAL-GAEVRWTGSNPLSTQ-----DDVAAALAEEGIPVFAWK 99 (268)
T ss_dssp ES--SHHHHHHHHHHHHT-TEEEEEEESSTTT-------HHHHHHHHHTTEEEEE-T
T ss_pred EEechHHHHHHHHHHHHc-CCeEEEecCCCcccc-----hHHHHHhccCCceEEEeC
Confidence 345667888888889986 999999999997663 333333446699877543
No 491
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=24.27 E-value=4.1e+02 Score=25.51 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCCCCCC-CCCccHHHHHHHHHHcCCcEEEccCCCCHH-HHHHHHHHhCCCCCcEEE
Q 022336 205 PLSSSIEQCKSVFGHDIAVFSNSAGLY-EYDNDASKARKLEGKIGIKVIRHRVKKPAG-TAEEIEKHFGCQSSQLIM 279 (299)
Q Consensus 205 gv~e~L~~Lke~fGikVaIVSNnaGs~-~~d~~~e~a~~~lk~LGI~vI~ha~KKP~p-~le~alk~lGi~PeEiam 279 (299)
...+.+.+..+. |-.|+++|-- |.. -+|+....++.+.+ .|+++.. =|.+ .+..++...|++.+..++
T Consensus 72 ~~~~~i~~~l~~-G~~ValvSda-GdP~I~dpg~~Lv~~~~~-~gi~v~v----IPGiSA~~aA~a~sG~~~~~f~f 141 (287)
T PRK14994 72 QKAETLLAKLQE-GQNIALVSDA-GTPLINDPGYHLVRTCRE-AGIRVVP----LPGPCAAITALSAAGLPSDRFCY 141 (287)
T ss_pred HHHHHHHHHHHC-CCeEEEEccC-CCCceeCCHHHHHHHHHH-CCCCEEE----eCCHHHHHHHHHHcCCCCCcceE
Confidence 333444444444 8899999833 222 35666666665544 4766542 1332 356667777776555553
No 492
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.20 E-value=2.1e+02 Score=22.99 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHHhCCCcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEE
Q 022336 203 WGPLSSSIEQCKSVFGHDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fGikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ 253 (299)
.+++.+.++.+++. |.+++.+|+.. + ...+..+.|...+.
T Consensus 56 t~e~i~~~~~a~~~-g~~iI~IT~~~---------~-l~~~~~~~~~~~~~ 95 (119)
T cd05017 56 TEETLSAVEQAKER-GAKIVAITSGG---------K-LLEMAREHGVPVII 95 (119)
T ss_pred CHHHHHHHHHHHHC-CCEEEEEeCCc---------h-HHHHHHHcCCcEEE
Confidence 46888899999987 99999999753 2 44455555765554
No 493
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.18 E-value=5.1e+02 Score=23.67 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=25.7
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEe
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFS 225 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVS 225 (299)
+.+++.||++|=+..+..-..+......++-.+.+++..+..|++|.-+.
T Consensus 23 ~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~ 72 (279)
T TIGR00542 23 QLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPSMC 72 (279)
T ss_pred HHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCceeee
Confidence 34567888888776665321111222334444444443333488765443
No 494
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=24.15 E-value=3.8e+02 Score=22.83 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=39.8
Q ss_pred HcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHh-----CCCcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEE
Q 022336 180 RRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSV-----FGHDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIR 253 (299)
Q Consensus 180 ~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~-----fGikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ 253 (299)
....=.+|+|.++.-+ ...+.+|+..+.+. .+.+++||-|+..+.. .......+..+++.++++++.
T Consensus 70 ~ad~~ilv~d~~~~~s-------~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 142 (190)
T cd04144 70 EGEGFILVYSITSRST-------FERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIE 142 (190)
T ss_pred hCCEEEEEEECCCHHH-------HHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEE
Confidence 3333455666654222 23445666655432 2568999999975431 112234556677778887776
Q ss_pred ccCCC
Q 022336 254 HRVKK 258 (299)
Q Consensus 254 ha~KK 258 (299)
-+.+.
T Consensus 143 ~SAk~ 147 (190)
T cd04144 143 ASAKT 147 (190)
T ss_pred ecCCC
Confidence 55444
No 495
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=24.03 E-value=1.5e+02 Score=29.26 Aligned_cols=50 Identities=18% Similarity=0.021 Sum_probs=35.6
Q ss_pred CCCHHHH---HHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCCC
Q 022336 172 YIDWAEL---QRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNSA 228 (299)
Q Consensus 172 ~Id~~~L---k~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNna 228 (299)
..|.+.+ -+.|+++||+.- .+.-...+...+.|+++.++ |+.|+++|--.
T Consensus 249 G~~~~ll~~~~~~g~~GlVl~g------~G~Gn~p~~~~~al~~a~~~-GipVV~~Sr~~ 301 (349)
T TIGR00520 249 NAPPLIVNAVLDAGAKGIVLAG------VGNGSLSAAGLKVNETAAKL-GVPIVRSSRVP 301 (349)
T ss_pred CCCHHHHHHHHhCCCCEEEEEe------ECCCCCCHHHHHHHHHHHHC-CCEEEEEccCC
Confidence 4665444 457899998863 23334456788999999887 99999988753
No 496
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=23.97 E-value=1.2e+02 Score=33.24 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=31.3
Q ss_pred HHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCCCcEEEEeCC
Q 022336 176 AELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFGHDIAVFSNS 227 (299)
Q Consensus 176 ~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fGikVaIVSNn 227 (299)
+..++...|+|+||.|+|++.+.... ....|+.|...-+-.|.|+|..
T Consensus 496 ~~y~~s~~rli~ldyd~t~~~~~~~~----~~~~l~~L~~dp~n~v~i~s~~ 543 (732)
T KOG1050|consen 496 SDYKKSKKRLILLDYDLTLIPPRSIK----AISILKDLCSDPKNIVYIVSGR 543 (732)
T ss_pred hhhhhccceEEEecccccccCCCCch----HHHHHHHHhcCCCCeEEEEEcc
Confidence 44567899999999999998666544 4455555544312246666654
No 497
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=23.97 E-value=3.7e+02 Score=21.37 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=54.6
Q ss_pred CCccccCCcCC--CCHHHHHHcCCcEEEEeccCeeecCCCcccCchHHHHHHHHHHhCC---CcEEEEeCCCCCCCCCcc
Q 022336 162 LPHVTVPDIRY--IDWAELQRRGFKGVVFDKDNTLTAPYSLTLWGPLSSSIEQCKSVFG---HDIAVFSNSAGLYEYDND 236 (299)
Q Consensus 162 ~P~~~v~sI~~--Id~~~Lk~~GIRaLVlD~DNTLT~p~~~~l~Pgv~e~L~~Lke~fG---ikVaIVSNnaGs~~~d~~ 236 (299)
.|++.+.+... +++..+ .| |.+|+..=.+-.++......+.+.+..+++++. | +.++-||.... ..+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~--~g-k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~-~~~~v~~v~vs~d~~----~d~ 73 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDL--KG-KPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD-GGDDVQVVFISVDPE----RDT 73 (142)
T ss_pred CCceEEEcCCCCEEchHHh--CC-CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh-hcCceEEEEEEECCC----CCC
Confidence 46666666544 556655 34 566666655444222333445555666666654 4 77777775431 012
Q ss_pred HHHHHHHHHHcCCcEEEccCCCCHHHHHHHHHHhCC
Q 022336 237 ASKARKLEGKIGIKVIRHRVKKPAGTAEEIEKHFGC 272 (299)
Q Consensus 237 ~e~a~~~lk~LGI~vI~ha~KKP~p~le~alk~lGi 272 (299)
.+.++.+.+.+|..+..-. -+......+++.+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~g~ 107 (142)
T cd02968 74 PEVLKAYAKAFGPGWIGLT--GTPEEIEALAKAFGV 107 (142)
T ss_pred HHHHHHHHHHhCCCcEEEE--CCHHHHHHHHHHhcE
Confidence 4567778888775432211 122234567777875
No 498
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=23.78 E-value=3.9e+02 Score=21.49 Aligned_cols=58 Identities=16% Similarity=0.231 Sum_probs=39.2
Q ss_pred CchHHHHHHHHHHhCC--CcEEEEeCCCCCCC-CCccHHHHHHHHHHcCCcEEEccCCCCH
Q 022336 203 WGPLSSSIEQCKSVFG--HDIAVFSNSAGLYE-YDNDASKARKLEGKIGIKVIRHRVKKPA 260 (299)
Q Consensus 203 ~Pgv~e~L~~Lke~fG--ikVaIVSNnaGs~~-~d~~~e~a~~~lk~LGI~vI~ha~KKP~ 260 (299)
...+..|+..+.+..+ .+++|+-|+..+.+ .....+.++.+++.++++++.-+.+...
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 147 (162)
T PF00071_consen 87 FENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGE 147 (162)
T ss_dssp HHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTT
T ss_pred ccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCC
Confidence 3456677777665544 68999988885543 2334567888999999877766655543
No 499
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=23.67 E-value=3.6e+02 Score=25.04 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=51.2
Q ss_pred HHHHHc-CCcEEEEeccCeeecCCCcccCc-hHHHHHHHHHHhCCC-cEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEE
Q 022336 176 AELQRR-GFKGVVFDKDNTLTAPYSLTLWG-PLSSSIEQCKSVFGH-DIAVFSNSAGLYEYDNDASKARKLEGKIGIKVI 252 (299)
Q Consensus 176 ~~Lk~~-GIRaLVlD~DNTLT~p~~~~l~P-gv~e~L~~Lke~fGi-kVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI 252 (299)
..+.+. .|+++-+=+.|+|.+-....+.+ .+...++++.+. .+ .|+|+||-. .+.+...-.+..+++.+|+.+-
T Consensus 92 ~a~E~~~~f~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~-~~~EvIlAtnpT--vEGeaTA~YI~~~l~~~~ikvt 168 (198)
T COG0353 92 LALEKTGEFRGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEG-SIKEVILATNPT--VEGEATALYIARLLKPLGLKVT 168 (198)
T ss_pred HHHHHhcccCeeEEEecCccCcccCCCcccccHHHHHHHHhcC-CCceEEEecCCC--ccchHHHHHHHHHHhhcCCeEE
Confidence 344444 49999999999999655555554 344555666653 56 899999975 1222223344556666787765
Q ss_pred EccCCCCHH
Q 022336 253 RHRVKKPAG 261 (299)
Q Consensus 253 ~ha~KKP~p 261 (299)
+-+..-|-+
T Consensus 169 RlA~GiPvG 177 (198)
T COG0353 169 RLAQGVPVG 177 (198)
T ss_pred EEeecCccC
Confidence 544334443
No 500
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=23.63 E-value=2.8e+02 Score=27.12 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=38.0
Q ss_pred CcEEEEeCCCCCCCCCccHHHHHHHHHHcCCcEEEccCCCCH--HHHHHHHHHhCCCCCcEEEEcC
Q 022336 219 HDIAVFSNSAGLYEYDNDASKARKLEGKIGIKVIRHRVKKPA--GTAEEIEKHFGCQSSQLIMVDM 282 (299)
Q Consensus 219 ikVaIVSNnaGs~~~d~~~e~a~~~lk~LGI~vI~ha~KKP~--p~le~alk~lGi~PeEiamVGD 282 (299)
++++|||+-+|++ ...|-..++.+|- |+.+. -+|. |.+.+.+...+.+-.+++++=|
T Consensus 1 m~lvIVTGlSGAG-----KsvAl~~lEDlGy-ycvDN-LPp~Llp~~~~~~~~~~~~~~kvAv~iD 59 (286)
T COG1660 1 MRLVIVTGLSGAG-----KSVALRVLEDLGY-YCVDN-LPPQLLPKLADLMLTLESRITKVAVVID 59 (286)
T ss_pred CcEEEEecCCCCc-----HHHHHHHHHhcCe-eeecC-CCHHHHHHHHHHHhhcccCCceEEEEEe
Confidence 3689999999876 5677778888884 44444 2443 3455555555566677887765
Done!