BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022337
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 135/224 (60%), Gaps = 10/224 (4%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---DVLSL 136
L V++ +P G I G+IG SG+GKSTL+R +N L P G+V +DG+++T L ++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGG-- 193
RR++GM+FQ L TV N+ +L ++EV + +K
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP--KDEVKRRVTELLSLVGLGDKHDSYP 138
Query: 194 -EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S GQ QRVA+AR LA+ P+VLL DE TSALDP +T++I ++L + ++ G+TI++++
Sbjct: 139 SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLIT 198
Query: 253 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 295
H + ++RI D V ++ NGE++E ++ S K P+A +F+Q
Sbjct: 199 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 242
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 10/224 (4%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---DVLSL 136
L V++ +P G I G+IG SG+GKSTL+R +N L P G+V +DG+++T L ++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGG-- 193
RR++GM+FQ L TV N+ +L ++EV + +K
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLEL--DNTPKDEVKRRVTELLSLVGLGDKHDSYP 161
Query: 194 -EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S GQ QRVA+AR LA+ P+VLL D+ TSALDP +T++I ++L + ++ G+TI++++
Sbjct: 162 SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 253 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 295
H + ++RI D V ++ NGE++E ++ S K P+A +F+Q
Sbjct: 222 HEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 133/224 (59%), Gaps = 10/224 (4%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---DVLSL 136
L V++ +P G I G+IG SG+GKSTL+R +N L P G+V +DG+++T L ++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGG-- 193
RR++G +FQ L TV N+ +L ++EV + +K
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLEL--DNTPKDEVKRRVTELLSLVGLGDKHDSYP 161
Query: 194 -EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S GQ QRVA+AR LA+ P+VLL D+ TSALDP +T++I ++L + ++ G+TI++++
Sbjct: 162 SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLIT 221
Query: 253 HSIKQIQRIADVVCLLVNGEIVEV-LKPDLLSEAKHPMALRFLQ 295
H ++RI D V ++ NGE++E ++ S K P+A +F+Q
Sbjct: 222 HEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 125/208 (60%), Gaps = 15/208 (7%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P+L+G+++E+ KG + ++G SG GKST+++ L R ++P +G+VFLDG++I L+V LR
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXX----------XXXXX 187
++G++ Q P LF+ ++ +NI YG R ++ E+ +
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSR--VVSYEEIVRAAKEANIHQFIDSLPDKYNTR 1164
Query: 188 XNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
G ++S GQ QR+A+AR L +P +LLLDE TSALD S + +++ L K + G T
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD--KAREGRT 1222
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
++++H + IQ AD++ ++ NG++ E
Sbjct: 1223 CIVIAHRLSTIQN-ADLIVVIQNGKVKE 1249
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%), Gaps = 17/218 (7%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
ILKG+N+++ G + ++G SG GKST ++ + RL++P G V +DG+DI ++V LR
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXX----------XXXX 188
+G++ Q P LF T+ +NIRYG + +T +E+ K
Sbjct: 465 IIGVVSQEPVLFATTIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+ G ++S GQ QR+A+AR L P++LLLDE TSALD S ++ L K + G T
Sbjct: 521 GERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD--KAREGRTT 578
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
++++H + + R ADV+ G IVE D L K
Sbjct: 579 IVIAHRLSTV-RNADVIAGFDGGVIVEQGNHDELMREK 615
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 125/208 (60%), Gaps = 15/208 (7%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P+L+G+++E+ KG + ++G SG GKST+++ L R ++P +G+VFLDG++I L+V LR
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLR 1106
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXX----------XXXXX 187
++G++ Q P LF+ ++ +NI YG R ++ E+ +
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSR--VVSYEEIVRAAKEANIHQFIDSLPDKYNTR 1164
Query: 188 XNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
G ++S GQ QR+A+AR L +P +LLLDE TSALD S + +++ L K + G T
Sbjct: 1165 VGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD--KAREGRT 1222
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVE 275
++++H + IQ AD++ ++ NG++ E
Sbjct: 1223 CIVIAHRLSTIQN-ADLIVVIQNGKVKE 1249
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 119/218 (54%), Gaps = 17/218 (7%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
ILKG+N+++ G + ++G SG GKST ++ + RL++P G V +DG+DI ++V LR
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXX----------XXXX 188
+G++ Q P LF T+ +NIRYG + +T +E+ K
Sbjct: 465 IIGVVSQEPVLFATTIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLV 520
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+ G ++S GQ QR+A+AR L P++LLLDE TSALD S ++ L K + G T
Sbjct: 521 GERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD--KAREGRTT 578
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286
++++H + + R ADV+ G IVE D L K
Sbjct: 579 IVIAHRLSTV-RNADVIAGFDGGVIVEQGNHDELMREK 615
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 128 bits (321), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 9/231 (3%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI-- 128
K+S +LKG+N+ I +G ++ +IGPSGSGKST LR LN L + G + +DG ++
Sbjct: 10 KKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKA 69
Query: 129 TDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXX 187
D ++ +R +VGM+FQ LF TV++NI P ++ +K +
Sbjct: 70 KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP-MKVRKWPREKAEAKAMELLDKVGL 128
Query: 188 XNKTGG---EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
+K +S GQAQRVA+AR LA EP+++L DEPTSALDP + V+ +L +
Sbjct: 129 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE- 187
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 294
GMT+V+V+H + + + D V + G I+E KP DL +H FL
Sbjct: 188 GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL 238
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 9/231 (3%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI-- 128
K+S +LKG+N+ I +G ++ +IGPSGSGKST LR LN L + G + +DG ++
Sbjct: 31 KKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKA 90
Query: 129 TDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXX 187
D ++ +R +VGM+FQ LF TV++NI P ++ +K +
Sbjct: 91 KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP-MKVRKWPREKAEAKAMELLDKVGL 149
Query: 188 XNKTGG---EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
+K +S GQAQRVA+AR LA EP+++L DEPTSALDP + V+ +L +
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE- 208
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP-DLLSEAKHPMALRFL 294
GMT+V+V+H + + + D V + G I+E KP DL +H FL
Sbjct: 209 GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL 259
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 124/218 (56%), Gaps = 15/218 (6%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
PI + ++ IP G + ++GPSGSGKST+L L RL++P SGT+ LDG DI L+ + LR
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXN-------- 189
K+G + Q P LF ++ +NI YG +T E+ + N
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGAD-DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTV 476
Query: 190 --KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
+ G +S GQ QR+A+AR L P++LLLDE TSALD + +++ L +L G T
Sbjct: 477 VGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRT 534
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
+++++H + I+ A++V +L G+I E K +LLS+
Sbjct: 535 VLVIAHRLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 571
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 127 bits (318), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 122/217 (56%), Gaps = 13/217 (5%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
PI + ++ IP G + ++GPSGSGKST+L L RL++P SGT+ LDG DI L+ + LR
Sbjct: 389 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 448
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTEN-----EVYKXXXXXXXXXXXXNKTG 192
K+G + Q P LF ++ +NI YG E EV N
Sbjct: 449 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 193 GE----ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
GE +S GQ QR+A+AR L P++LLLDE TSALD + +++ L +L G T+
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTV 566
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
++++H + I+ A++V +L G+I E K +LLS+
Sbjct: 567 LVIAHHLSTIKN-ANMVAVLDQGKITEYGKHEELLSK 602
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 117/203 (57%), Gaps = 4/203 (1%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L +N++I G M ++GPSGSGKSTLL + +++P SG ++ D +D+T+L R
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP--PKDRN 76
Query: 140 VGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTE-NEVYKXXXXXXXXXXXXNKTGGEISV 197
VG++FQ AL+ TV NI + +LR E ++ + N+ ++S
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSG 136
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
GQ QRVA+AR L EPEVLLLDEP S LD + + L +L+K+ G+T V V+H +
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAE 196
Query: 258 IQRIADVVCLLVNGEIVEVLKPD 280
+AD + ++ GEI++V PD
Sbjct: 197 ALAMADRIAVIREGEILQVGTPD 219
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 119/218 (54%), Gaps = 9/218 (4%)
Query: 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123
+V EL DG LKG+NM I +G + I+G +G GKSTL + N + +P SG +
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 124 DGR--DITDLDVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKLTENEVYKXXX 179
D + D + ++ LR +G++FQ P LF +V ++ +G KL E+E+ K
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAV--NMKLPEDEIRKRVD 125
Query: 180 XXXXXX---XXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236
+K +S GQ +RVA+A L EP+VL+LDEPT+ LDP+ I +
Sbjct: 126 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
LV+++K+ G+TI++ +H I + D V ++ G ++
Sbjct: 186 LVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVI 223
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 126/213 (59%), Gaps = 8/213 (3%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
GA ++GV+ +I +G ++G++GPSGSGK+T+LR + L P G V++ G+ +TDL
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP--P 84
Query: 136 LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEV---YKXXXXXXXXXXXXNKT 191
+R VG++FQ ALF+ TV DN+ +G LR K++ ++E+ + N+
Sbjct: 85 QKRNVGLVFQNYALFQHMTVYDNVSFG--LREKRVPKDEMDARVRELLRFMRLESYANRF 142
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
E+S GQ QRVALAR LA P+VLL DEP +A+D + + + ++ + G+T V V
Sbjct: 143 PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFV 202
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284
+H ++ +AD V +L G + + P+ + E
Sbjct: 203 THDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 116/206 (56%), Gaps = 11/206 (5%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
PIL+G+N+ + G + ++G SG GKST++ L R ++ G + +DG D+ D+++ LR
Sbjct: 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQ-------LRGKKLTENEVYKXXXXXXXXXXXXNK 190
+ V ++ Q PALF T+ +NI G + + K+ E + ++
Sbjct: 492 KNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDR 551
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
G ++S GQ QR+A+AR L P++LLLDE TSALD S ++ L K K G T ++
Sbjct: 552 -GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTII 608
Query: 251 VSHSIKQIQRIADVVCLLVNGEIVEV 276
++H + I R AD++ NG++VEV
Sbjct: 609 IAHRLSTI-RNADLIISCKNGQVVEV 633
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 112/207 (54%), Gaps = 15/207 (7%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
ILKG++ + G + ++GPSG GKST++ L R ++ G +F+DG +I L+ R
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153
Query: 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXX----------XXX 188
++ ++ Q P LF+ ++ +NI YG L +T +V +
Sbjct: 1154 QIAIVSQEPTLFDCSIAENIIYG--LDPSSVTMAQVEEAARLANIHNFIAELPEGFETRV 1211
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
G ++S GQ QR+A+AR L P++LLLDE TSALD S + +++ L + + G T
Sbjct: 1212 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD--RAREGRTC 1269
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVE 275
++++H + + AD + ++ NG I+E
Sbjct: 1270 IVIAHRLNTVMN-ADCIAVVSNGTIIE 1295
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 22/223 (9%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D IL +N+ I +G ++GI+G SGSGKSTL + + R + P +G V +DG D+ D
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 75
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIR------------YGPQLRGKKLTENEVYKXXXXXX 182
LRR+VG++ Q L +++DNI Y +L G +E+ +
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE------ 129
Query: 183 XXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+ G +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 189
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
G T+++++H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 190 --GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 22/223 (9%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D IL +N+ I +G ++GI+G SGSGKSTL + + R + P +G V +DG D+ D
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIR------------YGPQLRGKKLTENEVYKXXXXXX 182
LRR+VG++ Q L +++DNI Y +L G +E+ +
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE------ 127
Query: 183 XXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+ G +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 187
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
G T+++++H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 188 --GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 22/223 (9%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D IL +N+ I +G ++GI+G SGSGKSTL + + R + P +G V +DG D+ D
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIR------------YGPQLRGKKLTENEVYKXXXXXX 182
LRR+VG++ Q L +++DNI Y +L G +E+ +
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE------ 133
Query: 183 XXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+ G +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
G T+++++H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 194 --GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 17/218 (7%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P L V+ IP+G + ++G SGSGKST+ R ++ SG++ LDG D+ D + +LR
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXN-------- 189
R ++ Q LF T+ +NI Y + + T ++ + N
Sbjct: 417 RHFALVSQNVHLFNDTIANNIAYAAE---GEYTREQIEQAARQAHAMEFIENMPQGLDTV 473
Query: 190 --KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247
+ G +S GQ QRVA+AR L + VL+LDE TSALD S + I+ L +L+K T
Sbjct: 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK--T 531
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
+++++H + I++ AD + ++ GEI+E + DLL++
Sbjct: 532 VLVIAHRLSTIEQ-ADEILVVDEGEIIERGRHADLLAQ 568
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 9/224 (4%)
Query: 58 QIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP 117
+ QK + + DG L+ V+ + G + ++GPSG+GKST+LR L R ++
Sbjct: 48 RFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS 107
Query: 118 SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKX 177
SG + +DG+DI+ + SLR +G++ Q LF T+ DNIRYG G E
Sbjct: 108 SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAA 167
Query: 178 XXXXXXXX------XXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231
+ G ++S G+ QRVA+ART+ P ++LLDE TSALD + +
Sbjct: 168 GIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
I+ L K+ T ++V+H + + AD + ++ +G IVE
Sbjct: 228 AIQASLAKVCANR--TTIVVAHRLSTVVN-ADQILVIKDGCIVE 268
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 22/223 (9%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D IL +N+ I +G ++GI+G +GSGKSTL + + R + P +G V +DG D+ D
Sbjct: 16 DSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 75
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIR------------YGPQLRGKKLTENEVYKXXXXXX 182
LRR+VG++ Q L +++DNI Y +L G +E+ +
Sbjct: 76 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE------ 129
Query: 183 XXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+ G +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K
Sbjct: 130 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 189
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
G T+++++H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 190 --GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 229
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 22/223 (9%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D IL +N+ I +G ++GI+G SGSGKSTL + + R + P +G V +DG D+ D
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIR------------YGPQLRGKKLTENEVYKXXXXXX 182
LRR+VG++ Q L +++DNI Y +L G +E+ +
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE------ 133
Query: 183 XXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+ G +S GQ QR+A+AR L N P++L+ D+ TSALD S I + K+ K
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK 193
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
G T+++++H + ++ AD + ++ G+IVE K +LLSE
Sbjct: 194 --GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 114 bits (284), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 11/226 (4%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD---LDVLSL 136
L VN+ I G GI+GPSG+GK+T +R + L P +G ++ D R + L V
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKXXXXXXXX---XXXXNKTG 192
RK+GM+FQ AL+ T +NI + L K+++ E+ K N
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAF--PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
E+S GQ QRVALAR L +P +LLLDEP S LD + ++ +++ + G+T+++VS
Sbjct: 139 RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 253 HSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG 298
H I IAD V +LV G++V+V KP+ L + +P++++ L G
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPEDLYD--NPVSIQVASLIG 242
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 114/215 (53%), Gaps = 17/215 (7%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130
+ +D+ APILK +N+ I KG + +G SG GKSTL+ + R ++ SG + +DG +I D
Sbjct: 348 QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKD 407
Query: 131 LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXN- 189
SLR ++G++ Q LF TV +NI G T+ EV + N
Sbjct: 408 FLTGSLRNQIGLVQQDNILFSDTVKENILLGR----PTATDEEVVEAAKMANAHDFIMNL 463
Query: 190 ---------KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
+ G ++S GQ QR+++AR N P +L+LDE TSALD S I++ L L
Sbjct: 464 PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 523
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
K T ++V+H + I AD + ++ NG IVE
Sbjct: 524 SKDR--TTLIVAHRLSTITH-ADKIVVIENGHIVE 555
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 11/226 (4%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD---LDVLSL 136
L VN+ I G GI+GPSG+GK+T +R + L P +G ++ D R + L V
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKXXXXXXXX---XXXXNKTG 192
RK+GM+FQ AL+ T +NI + L K+++ E+ K N
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAF--PLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP 138
Query: 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
E+S Q QRVALAR L +P +LLLDEP S LD + ++ +++ + G+T+++VS
Sbjct: 139 RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVS 198
Query: 253 HSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFLQLSG 298
H I IAD V +LV G++V+V KP+ L + +P++++ L G
Sbjct: 199 HDPADIFAIADRVGVLVKGKLVQVGKPEDLYD--NPVSIQVASLIG 242
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 22/223 (9%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D IL +N+ I +G ++GI+G SGSGKSTL + + R + P +G V +DG D+ D
Sbjct: 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 73
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIR------------YGPQLRGKKLTENEVYKXXXXXX 182
LRR+VG++ Q L +++DNI Y +L G +E+ +
Sbjct: 74 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE------ 127
Query: 183 XXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+ G +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K
Sbjct: 128 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 187
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
G T+++++ + ++ AD + ++ G+IVE K +LLSE
Sbjct: 188 --GRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 227
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 22/223 (9%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
D IL +N+ I +G ++GI+G SGSGKSTL + + R + P +G V +DG D+ D
Sbjct: 20 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN 79
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIR------------YGPQLRGKKLTENEVYKXXXXXX 182
LRR+VG++ Q L +++DNI Y +L G +E+ +
Sbjct: 80 WLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE------ 133
Query: 183 XXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242
+ G +S GQ QR+A+AR L N P++L+ DE TSALD S I + K+ K
Sbjct: 134 GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK 193
Query: 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLLSE 284
G T+++++ + ++ AD + ++ G+IVE K +LLSE
Sbjct: 194 --GRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQGKHKELLSE 233
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 118/206 (57%), Gaps = 5/206 (2%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L +++++ G I+GP+G+GK+ L + P SG + LDG+D+TDL +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--PEKHD 73
Query: 140 VGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVG 198
+ ++Q +LF V N+ +G +R KK+ + + ++ +S G
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGG 131
Query: 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258
+ QRVALAR L P++LLLDEP SALDP + +N ++L L KK+ +T++ ++H +
Sbjct: 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA 191
Query: 259 QRIADVVCLLVNGEIVEVLKPDLLSE 284
+ +AD + ++++G++++V KP+ + E
Sbjct: 192 RIMADRIAVVMDGKLIQVGKPEEIFE 217
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 19/208 (9%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSL 136
LK VN+ I +G + I+GPSGSGKST+L + L +P G V++D DLD + +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 137 RR-KVGMLFQ----IPALFEGTVVDNI------RYGPQLRGKKLTENEVYKXXXXXXXXX 185
RR K+G +FQ IP L T ++N+ +Y + G++ +
Sbjct: 81 RRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGEE-RRKRALECLKMAELEE 136
Query: 186 XXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
N ++S GQ QRVA+AR LAN P ++L D+PT ALD + + I +L KL ++ G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEI 273
T+V+V+H I + R + + L +GE+
Sbjct: 197 KTVVVVTHDI-NVARFGERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 113/208 (54%), Gaps = 19/208 (9%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSL 136
LK VN+ I +G + I+GPSGSGKST+L + L +P G V++D DLD + +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 137 RR-KVGMLFQ----IPALFEGTVVDNI------RYGPQLRGKKLTENEVYKXXXXXXXXX 185
RR K+G +FQ IP L T ++N+ +Y + G++ +
Sbjct: 81 RRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAMSGEE-RRKRALECLKMAELEE 136
Query: 186 XXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
N ++S GQ QRVA+AR LAN P ++L D+PT ALD + + I +L KL ++ G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEI 273
T+V+V+H I + R + + L +GE+
Sbjct: 197 KTVVVVTHDI-NVARFGERIIYLKDGEV 223
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 117/206 (56%), Gaps = 10/206 (4%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR--DITDLDV 133
G ILKG+++ + KG + IIG SGSGKSTLL L L P G VFL+G+ D T+
Sbjct: 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 134 LSL--RRKVGMLFQIPALF-EGTVVDNIRYGPQLR-GK-KLTENEVYKXXXXXXXXXXXX 188
LSL RK+G +FQ L E T ++N+ P L+ GK K E +
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIV-PMLKMGKPKKEAKERGEYLLSELGLGDKL 134
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ E+S G+ QRVA+AR LANEP +L DEPT LD +T+ + D+ +K+ + G +I
Sbjct: 135 SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKI-NEGGTSI 193
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIV 274
VMV+H +++ + + +G++V
Sbjct: 194 VMVTHE-RELAELTHRTLEMKDGKVV 218
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 25/253 (9%)
Query: 50 EAEAEDDNQIQKPKFRVRELRKE---------SDDGAPILKGVNMEIPKGVIMGIIGPSG 100
E E +D + ++ +RE+R E D P+LK + I G + ++GP+G
Sbjct: 337 EEEKDDPDAVE-----LREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTG 391
Query: 101 SGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRY 160
SGK+T++ L R ++ G + +DG DI + SLR +G++ Q LF TV +N++Y
Sbjct: 392 SGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY 451
Query: 161 G------PQLR-GKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRVALARTLANEP 213
G +++ KLT ++ + G ++S GQ Q +A+ R P
Sbjct: 452 GNPGATDEEIKEAAKLTHSDHF-IKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510
Query: 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
++L+LDE TS +D + ++I+ + KL + G T ++++H + I+ AD++ +L +GEI
Sbjct: 511 KILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLNTIKN-ADLIIVLRDGEI 567
Query: 274 VEVLKPDLLSEAK 286
VE+ K D L + +
Sbjct: 568 VEMGKHDELIQKR 580
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 9/232 (3%)
Query: 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121
P RV L+K + GV+ E+ G + ++GPSG GK+T L L +++P SG +
Sbjct: 2 PSIRVVNLKKYFGK-VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 122 FLDGRDITDLDVLSLRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKXXXX 180
+ D D+ D+ R+VGM+FQ AL+ TV +NI + LR ++++++EV K
Sbjct: 61 YFD--DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAF--PLRARRISKDEVEKRVVE 116
Query: 181 XXXXXXXXN---KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237
N + ++S GQ QRVALAR L +P+VLL DEP S LD + +
Sbjct: 117 IARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEI 176
Query: 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289
L+++ G+T V V+H + +A + + G++V+ PD + ++ M
Sbjct: 177 KHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 109/208 (52%), Gaps = 19/208 (9%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL--- 136
LK VN+ I +G + I GPSGSGKST L + L +P G V++D DLD L
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 137 -RRKVGMLFQ----IPALFEGTVVDNI------RYGPQLRGKKLTENEVYKXXXXXXXXX 185
R K+G +FQ IP L T ++N+ +Y G++ +
Sbjct: 81 RRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAXSGEE-RRKRALECLKXAELEE 136
Query: 186 XXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
N ++S GQ QRVA+AR LAN P ++L DEPT ALD + + I +L KL ++ G
Sbjct: 137 RFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEI 273
T+V+V+H I + R + + L +GE+
Sbjct: 197 KTVVVVTHDI-NVARFGERIIYLKDGEV 223
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 17/239 (7%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125
R + DD IL+ ++ E I+ GPSG GKST+ L R ++P +G + +DG
Sbjct: 4 ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63
Query: 126 RDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXX 185
+ I ++ + + R ++G + Q A+ GT+ +N+ YG L G T+ ++++
Sbjct: 64 QPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYG--LEG-DYTDEDLWQVLDLAFARS 120
Query: 186 XXXN----------KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235
N + G +IS GQ QR+A+AR P++L+LDE T++LD S ++
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294
L L K G T ++++H + I AD + + G+I K + L A HP+ +++
Sbjct: 181 ALDSLMK--GRTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELV-ATHPLYAKYV 235
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 111/205 (54%), Gaps = 10/205 (4%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P L+ +N++IP G + ++G SGSGKST+ + R ++ G + +DG D+ + + SLR
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLR 416
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXN-------K 190
+V ++ Q LF TV +NI Y + + E + N +
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGE 476
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
G +S GQ QR+A+AR L + +L+LDE TSALD S + I+ L +L+K T ++
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLV 534
Query: 251 VSHSIKQIQRIADVVCLLVNGEIVE 275
++H + I++ AD + ++ +G IVE
Sbjct: 535 IAHRLSTIEK-ADEIVVVEDGVIVE 558
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 110/205 (53%), Gaps = 10/205 (4%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P L+ +N++IP G + ++G SGSGKST+ + R ++ G + +DG D+ + + SLR
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXN-------K 190
+V ++ Q LF TV +NI Y + E + N +
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
G +S GQ QR+A+AR L + +L+LDE TSALD S + I+ L +L+K T ++
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLV 534
Query: 251 VSHSIKQIQRIADVVCLLVNGEIVE 275
++H + I++ AD + ++ +G IVE
Sbjct: 535 IAHRLSTIEQ-ADEIVVVEDGIIVE 558
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 7/218 (3%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+ K +N++I +G + +GPSG GKSTLLR + L SG +F+ + + D R
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--PAER 75
Query: 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRG-KKLTENEVYKXXXXXXXXXXXXNKTGGEIS 196
VGM+FQ AL+ +V +N+ +G +L G KK N+ ++ +S
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALS 135
Query: 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
GQ QRVA+ RTL EP V LLDEP S LD + + +L K+ G T++ V+H
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 257 QIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294
+ +AD + +L G + +V KP E H A RF+
Sbjct: 196 EAMTLADKIVVLDAGRVAQVGKP---LELYHYPADRFV 230
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 7/218 (3%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+ K +N++I +G + +GPSG GKSTLLR + L SG +F+ + + D R
Sbjct: 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--PAER 75
Query: 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRG-KKLTENEVYKXXXXXXXXXXXXNKTGGEIS 196
VGM+FQ AL+ +V +N+ +G +L G KK N+ ++ +S
Sbjct: 76 GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALS 135
Query: 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
GQ QRVA+ RTL EP V LLDEP S LD + + +L K+ G T++ V+H
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 257 QIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294
+ +AD + +L G + +V KP E H A RF+
Sbjct: 196 EAMTLADKIVVLDAGRVAQVGKP---LELYHYPADRFV 230
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 112/216 (51%), Gaps = 7/216 (3%)
Query: 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140
K +N++I +G + +GPSG GKSTLLR + L SG +F+ + + D R V
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--PAERGV 77
Query: 141 GMLFQIPALFEG-TVVDNIRYGPQLRG-KKLTENEVYKXXXXXXXXXXXXNKTGGEISVG 198
GM+FQ AL+ +V +N+ +G +L G KK N+ ++ +S G
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGG 137
Query: 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258
Q QRVA+ RTL EP V LLD+P S LD + + +L K+ G T++ V+H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA 197
Query: 259 QRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294
+AD + +L G + +V KP E H A RF+
Sbjct: 198 MTLADKIVVLDAGRVAQVGKP---LELYHYPADRFV 230
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 14/207 (6%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+L+G+ + G + ++GP+GSGKST+ L L++P G + LDG+ + + L R
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXX----------XXX 188
+V + Q P +F ++ +NI YG +K T E+
Sbjct: 92 QVAAVGQEPQVFGRSLQENIAYG---LTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEV 148
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
++ G ++S GQ Q VALAR L +P VL+LD+ TSALD S +E +L + +++ ++
Sbjct: 149 DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSV 208
Query: 249 VMVSHSIKQIQRIADVVCLLVNGEIVE 275
++++ + +++ AD + L G I E
Sbjct: 209 LLITQHLSLVEQ-ADHILFLEGGAIRE 234
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 121/237 (51%), Gaps = 26/237 (10%)
Query: 54 EDDNQIQKPK------FRVRELRK-ESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTL 106
E DN + P F E R E+ D P+L GVN + G ++ ++G +GSGKSTL
Sbjct: 328 EADNALALPNVEGSVSFENVEFRYFENTD--PVLSGVNFSVKPGSLVAVLGETGSGKSTL 385
Query: 107 LRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG 166
+ + RL +P G V +D D+ + + LR + + Q LF GT+ +N+++G +
Sbjct: 386 MNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE--- 442
Query: 167 KKLTENEVYKXXXXXXXXXXXXN----------KTGGEISVGQAQRVALARTLANEPEVL 216
T++E+ + + + G S GQ QR+++AR L +P+VL
Sbjct: 443 -DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL 501
Query: 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273
+LD+ TS++DPI+ + I D L + K G T +++ I +AD + +L G++
Sbjct: 502 ILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIITQKIPT-ALLADKILVLHEGKV 555
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 8/201 (3%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142
+N+ I G + ++GPSG GK+T LR + L EP G ++ RD+T L R + M
Sbjct: 31 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP--PKDRNISM 88
Query: 143 LFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXX---NKTGGEISVG 198
+FQ A++ TV +NI + L+ KK ++E+ K N+ ++S G
Sbjct: 89 VFQSYAVWPHMTVYENIAF--PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGG 146
Query: 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258
Q QRVA+AR + EP+VLL+DEP S LD + + KL++K +T + V+H +
Sbjct: 147 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 206
Query: 259 QRIADVVCLLVNGEIVEVLKP 279
+ D + ++ G+++++ P
Sbjct: 207 MTMGDRIAVMNRGQLLQIGSP 227
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 108/201 (53%), Gaps = 8/201 (3%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142
+N+ I G + ++GPSG GK+T LR + L EP G ++ RD+T L R + M
Sbjct: 30 LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP--PKDRNISM 87
Query: 143 LFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXX---NKTGGEISVG 198
+FQ A++ TV +NI + L+ KK ++E+ K N+ ++S G
Sbjct: 88 VFQSYAVWPHMTVYENIAF--PLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGG 145
Query: 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258
Q QRVA+AR + EP+VLL+DEP S LD + + KL++K +T + V+H +
Sbjct: 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA 205
Query: 259 QRIADVVCLLVNGEIVEVLKP 279
+ D + ++ G+++++ P
Sbjct: 206 MTMGDRIAVMNRGQLLQIGSP 226
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 10/209 (4%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----LDVLS 135
++ +++E+ G M ++GPSG GK+T LR + L EP G +++ + + D + V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 136 LRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEV---YKXXXXXXXXXXXXNKT 191
R + M+FQ AL+ TV DNI + +LR K+ E+ + N+
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLR--KVPRQEIDQRVREVAELLGLTELLNRK 136
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
E+S GQ QRVAL R + +P+V L+DEP S LD + L KL+++ G+T + V
Sbjct: 137 PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYV 196
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+H + + D + ++ G + +V PD
Sbjct: 197 THDQVEAMTMGDRIAVMNRGVLQQVGSPD 225
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 8/204 (3%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+L+G+ + G + ++GP+GSGKST+ L L++P G V LDG + D L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 139 KVGMLFQIPALFEGTVVDNIRYG-------PQLRGKKLTENEVYKXXXXXXXXXXXXNKT 191
+V + Q P LF + +NI YG ++ + +T
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
G ++S GQ Q VALAR L +P +L+LD+ TSALD + ++ +L + + T++++
Sbjct: 154 GNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 252 SHSIKQIQRIADVVCLLVNGEIVE 275
+H + +R A + L G + E
Sbjct: 214 THQLSLAER-AHHILFLKEGSVCE 236
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 10/209 (4%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----VLS 135
+K +++EI G + ++GPSG GK+T LR + L EP G ++++ + D + V
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 136 LRRKVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXX---XXXXNKT 191
R V +FQ AL+ TV DNI + +LR K+ + E+ K N+
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLR--KVPKQEIDKRVREVAEXLGLTELLNRK 139
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
E+S GQ QRVAL R + P+V L DEP S LD L KL+++ G+T + V
Sbjct: 140 PRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYV 199
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
+H + D + + GE+ +V PD
Sbjct: 200 THDQVEAXTXGDRIAVXNKGELQQVGTPD 228
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 108/204 (52%), Gaps = 13/204 (6%)
Query: 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
+G +LK VN E G I ++G +GSGK+TLL+ L L +G +FLDG + D
Sbjct: 22 NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDG---SPADPF 77
Query: 135 SLRRKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTG 192
LR+ VG +FQ P+ + TV +++ + ++ G L E+E+ K
Sbjct: 78 LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMG--LDESEMRKRIKKVLELVGLSGLAA 135
Query: 193 GE---ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+ +S GQ QR+A+A LA + L LDEP S LDP S + I VL LK + G I+
Sbjct: 136 ADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNE-GKGII 194
Query: 250 MVSHSIKQIQRIADVVCLLVNGEI 273
+V+H ++ + + D + + NG I
Sbjct: 195 LVTHELEYLDDM-DFILHISNGTI 217
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 8/204 (3%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+L+G+ + G + ++GP+GSGKST+ L L++P G V LDG + D L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 139 KVGMLFQIPALFEGTVVDNIRYG-------PQLRGKKLTENEVYKXXXXXXXXXXXXNKT 191
+V + Q P LF + +NI YG ++ + +T
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
G +++VGQ Q VALAR L +P +L+LD TSALD + ++ +L + + T++++
Sbjct: 154 GNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 252 SHSIKQIQRIADVVCLLVNGEIVE 275
+ + +R A + L G + E
Sbjct: 214 TQQLSLAER-AHHILFLKEGSVCE 236
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 117/221 (52%), Gaps = 5/221 (2%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125
V++LRK ILKG++ EI +G I G+IGP+G+GK+T LR ++ L +P SG V + G
Sbjct: 18 VKDLRKRIGK-KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76
Query: 126 RDITDLDVLSLRRKVGMLFQIPALFEGTV-VDNIRYGPQLRGKKLTE-NEVYKXXXXXXX 183
+++ + + +R+ + L + + ++ +R+ +E E+ +
Sbjct: 77 KNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG 135
Query: 184 XXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
S G +++ +AR L P + +LDEPTS LD ++ + + +L K +
Sbjct: 136 LGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL-KQASQ 194
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284
G+TI++ SH++ +++ + D + L+ NG IVE + L E
Sbjct: 195 EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 8/204 (3%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+L+G+ + G + ++GP+GSGKST+ L L++P G V LDG + D L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93
Query: 139 KVGMLFQIPALFEGTVVDNIRYG-------PQLRGKKLTENEVYKXXXXXXXXXXXXNKT 191
+V + Q P LF + +NI YG ++ + +T
Sbjct: 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET 153
Query: 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
G ++S GQ Q VALAR L +P +L+LD TSALD + ++ +L + + T++++
Sbjct: 154 GNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213
Query: 252 SHSIKQIQRIADVVCLLVNGEIVE 275
+ + +R A + L G + E
Sbjct: 214 TQQLSLAER-AHHILFLKEGSVCE 236
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 131/253 (51%), Gaps = 20/253 (7%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
K V +L K G +LKGV+++ G ++ IIG SGSGKST LR +N L +P G +
Sbjct: 6 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 123 LDGRDIT------------DLDVLS-LRRKVGMLFQIPALFEG-TVVDNIRYGP-QLRG- 166
++G++I D + L LR ++ M+FQ L+ TV++N+ P Q+ G
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 124
Query: 167 -KKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225
K K K +S GQ QRV++AR LA EP+VLL DEPTSAL
Sbjct: 125 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184
Query: 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD-LLSE 284
DP + ++ +L ++ G T+V+V+H + + ++ V L G+I E P+ +
Sbjct: 185 DPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
Query: 285 AKHPMALRFLQLS 297
+ P +FL+ S
Sbjct: 244 PQSPRLQQFLKGS 256
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 88.2 bits (217), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 18/206 (8%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
LK +N IP G ++G +GSGKST+ + L R ++ G + + G+++ + S+R
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSI 94
Query: 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXX----------XXXXXXXN 189
+G++ Q LF T+ NI YG T+ EV K
Sbjct: 95 IGIVPQDTILFNETIKYNILYGKL----DATDEEVIKATKSAQLYDFIEALPKKWDTIVG 150
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
G ++S G+ QR+A+AR L +P++++ DE TS+LD + + + L+K T++
Sbjct: 151 NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR--TLI 208
Query: 250 MVSHSIKQIQRIADVVCLLVNGEIVE 275
+++H + I A+ + LL G+IVE
Sbjct: 209 IIAHRLSTISS-AESIILLNKGKIVE 233
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 113/216 (52%), Gaps = 4/216 (1%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130
+S P+L +++ + G I+ IIG SG GK+TLLR L +P SG + L G+ I
Sbjct: 11 SKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS 70
Query: 131 LDV-LSLR-RKVGMLFQIPALFEG-TVVDNIRYG-PQLRGKKLTENEVYKXXXXXXXXXX 186
+ L +R R++G L Q LF TV NI YG +G+ E + +
Sbjct: 71 KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISE 130
Query: 187 XXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+ E+S GQ QR ALAR LA +PE++LLDEP SALD + I + ++ + +G
Sbjct: 131 LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGK 190
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282
+ V VSH ++ + AD + ++ G I++ P L
Sbjct: 191 SAVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 106/203 (52%), Gaps = 6/203 (2%)
Query: 95 IIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-T 153
++GP+G+GKS L + + +P G V L+G DIT L RR +G + Q ALF +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLS 86
Query: 154 VVDNIRYGPQLRGKKLTENEVYKXXXXXXX-XXXXXNKTGGEISVGQAQRVALARTLANE 212
V NI YG LR + E + ++ +S G+ QRVALAR L +
Sbjct: 87 VYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144
Query: 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272
P +LLLDEP SA+D + + + L ++++ + I+ V+H + + +AD V +++NG
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204
Query: 273 IVEVLKPDLLSEAKHPMALRFLQ 295
IVE K L AK+ FL
Sbjct: 205 IVEKGKLKELFSAKNGEVAEFLS 227
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 8/209 (3%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
++ V++ I G ++ IIGP+G+GKSTLLR L P G L G+++ +L R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 139 KVGMLFQIPAL-FEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISV 197
++ Q L F +V + I+ G G + + + + +S
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGS-QDRQALQQVMAQTDCLALAQRDYRVLSG 144
Query: 198 GQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
G+ QRV LAR LA P L LDEPTSALD Q+ +L +L ++ + + V
Sbjct: 145 GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCV 204
Query: 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPD 280
H + AD + LL G++V P+
Sbjct: 205 LHDLNLAALYADRIMLLAQGKLVACGTPE 233
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 105/211 (49%), Gaps = 17/211 (8%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L GV++ + KG + IIGP+GSGKSTL+ + + G V+ + +DIT+ + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 140 -VGMLFQIPA-LFEGTVVDNIRYGPQLRGKKLTENEVYK--------------XXXXXXX 183
+ FQ P L E TV++N+ G G+ + YK
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 184 XXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
++ GE+S GQ + V + R L P+++++DEP + + P +I + +++LK K
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
G+T +++ H + + D + ++ NG+I+
Sbjct: 203 -GITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 105/211 (49%), Gaps = 17/211 (8%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L GV++ + KG + IIGP+GSGKSTL+ + + G V+ + +DIT+ + L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 140 -VGMLFQIPA-LFEGTVVDNIRYGPQLRGKKLTENEVYK--------------XXXXXXX 183
+ FQ P L E TV++N+ G G+ + YK
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 184 XXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
++ GE+S GQ + V + R L P+++++DEP + + P +I + +++LK K
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
G+T +++ H + + D + ++ NG+I+
Sbjct: 203 -GITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 105/211 (49%), Gaps = 17/211 (8%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L GV++ + KG + IIGP+GSGKSTL+ + + G V+ + +DIT+ + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 140 -VGMLFQIPA-LFEGTVVDNIRYGPQLRGKKLTENEVYK--------------XXXXXXX 183
+ FQ P L E TV++N+ G G+ + YK
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 184 XXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243
++ GE+S GQ + V + R L P+++++D+P + + P +I + +++LK K
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
G+T +++ H + + D + ++ NG+I+
Sbjct: 203 -GITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 106/198 (53%), Gaps = 4/198 (2%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
+KG+++++P+G I+ +IG +G+GK+T L A+ L G + +G+DIT+ + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 140 -VGMLFQIPALF-EGTVVDNIRYGPQLR-GKKLTENEVYKXXXXXXXXXXXXNKTGGEIS 196
+ ++ + +F E TV +N+ G R K+ + ++ + GG +S
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLS 141
Query: 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
G+ Q +A+ R L + P++L DEP+ L PI + +V+ K+ ++ G TI++V +
Sbjct: 142 GGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNAL 200
Query: 257 QIQRIADVVCLLVNGEIV 274
++A +L G+IV
Sbjct: 201 GALKVAHYGYVLETGQIV 218
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 76 GAPI----LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL 131
G P+ L+ V++ I +G + + G +GSGKSTLL+ + L EP SG V DG
Sbjct: 15 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 74
Query: 132 DVLSLRRKVGMLFQIPA--LFEGTVVDNIRYG---------PQLRGKKLTENEVYKXXXX 180
++ RR +G+ FQ P F V D + + P KK E
Sbjct: 75 EI---RRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-------FV 124
Query: 181 XXXXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
++ +S G+ +RVA+A + +EP++L+LDEP LD ++ ++ K
Sbjct: 125 GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
K G T++++SH I+ + D V +L G+ V
Sbjct: 185 KTL-GKTVILISHDIETVINHVDRVVVLEKGKKV 217
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 26/214 (12%)
Query: 76 GAPI----LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL 131
G P+ L+ V++ I +G + + G +GSGKSTLL+ + L EP SG V DG
Sbjct: 17 GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 76
Query: 132 DVLSLRRKVGMLFQIPA--LFEGTVVDNIRYG---------PQLRGKKLTENEVYKXXXX 180
++ RR +G+ FQ P F V D + + P KK E
Sbjct: 77 EI---RRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-------FV 126
Query: 181 XXXXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240
++ +S G+ +RVA+A + +EP++L+LDEP LD ++ ++ K
Sbjct: 127 GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 186
Query: 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
K G T++++SH I+ + D V +L G+ V
Sbjct: 187 KTL-GKTVILISHDIETVINHVDRVVVLEKGKKV 219
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 105/210 (50%), Gaps = 16/210 (7%)
Query: 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP----SGTVFLDGRDITDLDVLSLR 137
G++++I + + I+G S SGKST++ A+ + P SG V G+D+ + LR
Sbjct: 26 GISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELR 85
Query: 138 R-KVGMLFQIPALFEGT------VVDNIR-----YGPQLRGKKLTENEVYKXXXXXXXXX 185
+ + + +P + + V+++ + +G + +L E K
Sbjct: 86 KIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPE 145
Query: 186 XXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245
N ++S G QRV +A L +P VL+LDEPTSALD ++ +I +L +LKK
Sbjct: 146 AVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLK 205
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+T++ V+H I +AD V ++ G +VE
Sbjct: 206 ITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 16/191 (8%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
K +R+L D P+L+ + M I KG ++ GP+G GK+TLL+ ++ +P G +
Sbjct: 10 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 123 LDGRDITDLDVLSLRRKVGMLFQIPALF----EGTVVDNIRYGPQLRGKKLTENEVYKXX 178
+G IT + G +F +P + +V D ++ L G K+ +NE+
Sbjct: 68 YNGVPITKVK--------GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI--MD 117
Query: 179 XXXXXXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238
K GE+S G +RV LA TL E+ +LD+P A+D S + ++
Sbjct: 118 ALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177
Query: 239 KLKKKHGMTIV 249
++ K+ G+ I+
Sbjct: 178 EILKEKGIVII 188
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 15/178 (8%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145
EI KG ++GI+GP+G GK+T ++ L + EP G + D L++ K
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD---------LTVAYKPQY--- 355
Query: 146 IPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRVAL 205
I A +EGTV + + ++ KL N ++ E+S G+ QRVA+
Sbjct: 356 IKADYEGTVYELL---SKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAI 412
Query: 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263
A TL + ++ LLDEP++ LD + + L +K+ T ++V H + I ++D
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSD 470
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 87 IPKGVIMGIIGPSGSGKSTLLRAL-----------NRLWEPPSGTV-FLDGRDITD---- 130
+ +G ++GI+GP+G+GKST ++ L N W+ G + G ++ +
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD---GVIRAFRGNELQNYFEK 100
Query: 131 LDVLSLRRKVGMLFQ--IPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXX 188
L +R V + IP +G V++ + KK E +
Sbjct: 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELL--------KKADETGKLEEVVKALELENVL 152
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI 248
+ +S G+ QRVA+A L DEP+S LD N + +L ++ G ++
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSV 211
Query: 249 VMVSHSIKQIQRIADVVCLLVNGE 272
++V H + + ++D++ +V GE
Sbjct: 212 LVVEHDLAVLDYLSDIIH-VVYGE 234
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145
EI KG ++GI+GP+G GK+T ++ L + EP G V D L++ K
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQY--- 411
Query: 146 IPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRVAL 205
I A +EGTV + + ++ KL N ++ ++S G+ QRVA+
Sbjct: 412 IKAEYEGTVYELL---SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAI 468
Query: 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
A TL + ++ LLDEP++ LD + + L +K+ T ++V H + I ++D +
Sbjct: 469 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 528
Query: 266 CLLVNGEIVEVLKPDLLSEAKHPMALR 292
++ GE P A PM +R
Sbjct: 529 -IVFEGE------PGRHGRALPPMGMR 548
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI 146
+ G+++GI+GP+G+GK+T ++ L P + D D + + R ++
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN----LCEDNDSWDNVIRAFRGN-----EL 150
Query: 147 PALFEGTVVDNIR--YGPQ--------LRGK------KLTENEVYKXXXXXXXXXXXXNK 190
FE IR PQ ++GK K+ E ++ ++
Sbjct: 151 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR 210
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
++S G+ QRVA+A L + DEP+S LD + V+ +L + G +++
Sbjct: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLV 269
Query: 251 VSHSIKQIQRIADVVCLLVNGE 272
V H + + ++DV+ +V GE
Sbjct: 270 VEHDLAVLDYLSDVI-HVVYGE 290
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145
EI KG ++GI+GP+G GK+T ++ L + EP G V D L++ K
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQY--- 425
Query: 146 IPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRVAL 205
I A +EGTV + + ++ KL N ++ ++S G+ QRVA+
Sbjct: 426 IKAEYEGTVYELL---SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAI 482
Query: 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265
A TL + ++ LLDEP++ LD + + L +K+ T ++V H + I ++D +
Sbjct: 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 542
Query: 266 CLLVNGEIVEVLKPDLLSEAKHPMALR 292
++ GE P A PM +R
Sbjct: 543 -IVFEGE------PGRHGRALPPMGMR 562
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 89/202 (44%), Gaps = 27/202 (13%)
Query: 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI 146
+ G+++GI+GP+G+GK+T ++ L P + D D + + R ++
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN----LCEDNDSWDNVIRAFRGN-----EL 164
Query: 147 PALFEGTVVDNIR--YGPQ--------LRGK------KLTENEVYKXXXXXXXXXXXXNK 190
FE IR PQ ++GK K+ E ++ ++
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDR 224
Query: 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
++S G+ QRVA+A L + DEP+S LD + V+ +L + G +++
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLV 283
Query: 251 VSHSIKQIQRIADVVCLLVNGE 272
V H + + ++DV+ +V GE
Sbjct: 284 VEHDLAVLDYLSDVI-HVVYGE 304
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 23/222 (10%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138
+ + +N ++ KG I+ ++G +G GKSTLL L + P G + +V
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI----------EVYQSIG 69
Query: 139 KVGMLFQIPALFEGTVVDNIRYG-----PQLRGKKLTENEVYKXXXXXXXXXXXXNKTGG 193
V F P F +V+D + G K + +V +
Sbjct: 70 FVPQFFSSP--FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT 127
Query: 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
+S GQ Q + +AR +A+E +++LLDEPTSALD + + +L+ L + MT+V +H
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 254 SIKQIQRIADVVCLLVN-----GEIVEVLKPDLLSEAKH-PM 289
Q+ IA+ LL GE +L + L+ H PM
Sbjct: 188 QPNQVVAIANKTLLLNKQNFKFGETRNILTSENLTALFHLPM 229
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 16/177 (9%)
Query: 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130
K ++ G IL+ ++ I G +G++G +GSGKSTLL A RL G + +DG
Sbjct: 28 KYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEIQIDGVSWDS 86
Query: 131 LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXN- 189
+ + R+ G++ Q +F GT N+ ++ E++K
Sbjct: 87 ITLEQWRKAFGVIPQKVFIFSGTFRKNLD-----PNAAHSDQEIWKVADEVGLRSVIEQF 141
Query: 190 ---------KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237
G +S G Q + LAR++ ++ ++LLLDEP++ LDP++ Q I L
Sbjct: 142 PGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTL 198
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 13/212 (6%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR--DITDLDV 133
G ILK ++ +I KG + G +G+GK+TLL LN SGTV L G+
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSA 92
Query: 134 LSLRRKVGMLFQ--IPALFEGTVVDNIRYGPQLRGKKLTE-------NEVYKXXXXXXXX 184
++R+ +G + + EG V ++ + + + NE ++
Sbjct: 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXS 152
Query: 185 XXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH 244
G +S G+ QRV +AR L +P+VL+LDEP + LD I+ +++ +L L +
Sbjct: 153 AKAQQYIG-YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDSY 211
Query: 245 -GMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275
+ + V+H I++I + LL +G+ ++
Sbjct: 212 PTLAXIYVTHFIEEITANFSKILLLKDGQSIQ 243
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N+ I KG ++ I G +GSGK++LL + E G + GR
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNIRYG---PQLRGKKLTENEVYKXXXXXXXXXXXXNKTG 192
V Q + GT+ +NI +G + R K + + + N
Sbjct: 101 ----VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVV--KACQLQQDITKFAEQDNTVL 154
Query: 193 GE----ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMT 247
GE +S GQ R++LAR + + ++ LLD P LD + + + E + KL T
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK--T 212
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
++V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 213 RILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 256
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N+ I KG ++ I G +GSGK++LL + E G + GR
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNIRYG---PQLRGKKLTENEVYKXXXXXXXXXXXXNKTG 192
V Q + GT+ +NI +G + R K + + + N
Sbjct: 101 ----VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVV--KACQLQQDITKFAEQDNTVL 154
Query: 193 GE----ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMT 247
GE +S GQ R++LAR + + ++ LLD P LD + + + E + KL T
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK--T 212
Query: 248 IVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
++V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 213 RILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 256
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 32/211 (15%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137
P L G+ IP+G ++ ++G G GKS+LL AL + G V + G
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------ 66
Query: 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXX-----------XX 186
V + Q + ++ +NI +G QL E Y+
Sbjct: 67 -SVAYVPQQAWIQNDSLRENILFGCQL------EEPYYRSVIQACALLPDLEILPSGDRT 119
Query: 187 XXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHG 245
+ G +S GQ QRV+LAR + + ++ L D+P SA+D ++I E+V+
Sbjct: 120 EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKN 179
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276
T ++V+HS+ + ++ DV+ ++ G+I E+
Sbjct: 180 KTRILVTHSMSYLPQV-DVIIVMSGGKISEM 209
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 29/207 (14%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
+ G P+LK +N +I +G ++ + G +G+GK++LL + EP G + GR
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------- 70
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNI--------RYGPQLRGKKLTENEVYKXXXXXXXXX 185
+ Q + GT+ +NI RY ++ +L E+
Sbjct: 71 ------ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED----ISKFAEKDN 120
Query: 186 XXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKH 244
+ G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL
Sbjct: 121 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 180
Query: 245 GMTIVMVSHSIKQIQRIADVVCLLVNG 271
T ++V+ ++ +++ AD + +L G
Sbjct: 181 --TRILVTSKMEHLKK-ADKILILHEG 204
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 30/208 (14%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
+ G P+LK +N +I +G ++ + G +G+GK++LL + EP G + GR
Sbjct: 30 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------- 82
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNI---------RYGPQLRGKKLTENEVYKXXXXXXXX 184
+ Q + GT+ +NI RY ++ +L E+
Sbjct: 83 ------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED----ISKFAEKD 132
Query: 185 XXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKK 243
+ G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL
Sbjct: 133 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 192
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNG 271
T ++V+ ++ +++ AD + +L G
Sbjct: 193 K--TRILVTSKMEHLKK-ADKILILHEG 217
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 38/227 (16%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N +I +G ++ + G +G+GK++LL + EP G + GR
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNI---------RYGPQLRGKKLTENEVYKXXXXXXXXXX 186
+ Q + GT+ +NI RY ++ +L E+
Sbjct: 101 ----ISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEED----ISKFAEKDNI 152
Query: 187 XXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHG 245
+ G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL
Sbjct: 153 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK- 211
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
T ++V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 212 -TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLQPDFSSK 256
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 37/226 (16%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N+ I KG ++ I G +GSGK++LL + E G + GR
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNI--------RYGPQLRGKKLTENEVYKXXXXXXXXXXX 187
V Q + GT+ +NI RY ++ +L ++
Sbjct: 101 ----VSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQD----ITKFAEQDNTV 152
Query: 188 XNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGM 246
+ G +S GQ R++LAR + + ++ LLD P LD + + + E + KL
Sbjct: 153 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK-- 210
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
T ++V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 211 TRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 255
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 30/208 (14%)
Query: 74 DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
+ G P+LK +N +I +G ++ + G +G+GK++LL + EP G + GR
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------- 70
Query: 134 LSLRRKVGMLFQIPALFEGTVVDNI---------RYGPQLRGKKLTENEVYKXXXXXXXX 184
+ Q + GT+ +NI RY ++ +L E+
Sbjct: 71 ------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED----ISKFAEKD 120
Query: 185 XXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKK 243
+ G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL
Sbjct: 121 NIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMAN 180
Query: 244 HGMTIVMVSHSIKQIQRIADVVCLLVNG 271
T ++V+ ++ +++ AD + +L G
Sbjct: 181 K--TRILVTSKMEHLKK-ADKILILHEG 205
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 37/226 (16%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N +I +G ++ + G +G+GK++LL + EP G + GR
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNI--------RYGPQLRGKKLTENEVYKXXXXXXXXXXX 187
+ Q + GT+ +NI RY ++ +L E+
Sbjct: 101 ----ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED----ISKFAEKDNIV 152
Query: 188 XNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGM 246
+ G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK-- 210
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
T ++V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 211 TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLRPDFSSK 255
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N+ I KG ++ I G +GSGK++LL + E G + GR
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNI---------RYGPQLRGKKLTENEVYKXXXXXXXXXX 186
V Q + GT+ +NI RY ++ +L ++
Sbjct: 101 ----VSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQD----ITKFAEQDNT 152
Query: 187 XXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHG 245
+ G +S GQ R++LAR + + ++ LLD P LD + + + E + KL
Sbjct: 153 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK- 211
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
T ++V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 212 -TRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 256
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 37/226 (16%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N +I +G ++ + G +G+GK++LL + EP G + GR
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNI--------RYGPQLRGKKLTENEVYKXXXXXXXXXXX 187
+ Q + GT+ +NI RY ++ +L E+
Sbjct: 101 ----ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED----ISKFAEKDNIV 152
Query: 188 XNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGM 246
+ G +S GQ +++LAR + + ++ LLD P LD ++ + I E + KL
Sbjct: 153 LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK-- 210
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
T ++V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 211 TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLQPDFSSK 255
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N+ I KG ++ I G +GSGK++LL + E G + GR
Sbjct: 50 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNI---------RYGPQLRGKKLTENEVYKXXXXXXXXXX 186
V Q + GT+ +NI RY ++ +L ++
Sbjct: 101 ----VSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQD----ITKFAEQDNT 152
Query: 187 XXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHG 245
+ G +S GQ R++LAR + + ++ LLD P LD + + + E + KL
Sbjct: 153 VLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANK- 211
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
T ++V+ ++ + R AD + +L G ++ L+PD S+
Sbjct: 212 -TRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQSLRPDFSSK 256
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 37/226 (16%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N +I +G ++ + G +G+GK++LL + EP G + GR
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNI--------RYGPQLRGKKLTENEVYKXXXXXXXXXXX 187
+ Q + GT+ +NI RY ++ +L E+
Sbjct: 101 ----ISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEED----ISKFAEKDNIV 152
Query: 188 XNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGM 246
+ G +S GQ R++LAR + + ++ LLD P LD ++ + I E + KL
Sbjct: 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK-- 210
Query: 247 TIVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
T ++V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 211 TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLRPDFSSK 255
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 102/227 (44%), Gaps = 38/227 (16%)
Query: 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135
G P+LK +N +I +G ++ + G +G+GK++LL + EP G + GR
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR--------- 100
Query: 136 LRRKVGMLFQIPALFEGTVVDNI---------RYGPQLRGKKLTENEVYKXXXXXXXXXX 186
+ Q + GT+ +NI RY ++ +L E+
Sbjct: 101 ----ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED----ISKFAEKDNI 152
Query: 187 XXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHG 245
+ G +S GQ +++LAR + + ++ LLD P LD ++ + I E + KL
Sbjct: 153 VLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK- 211
Query: 246 MTIVMVSHSIKQIQRIADVVCLLVNGEI--------VEVLKPDLLSE 284
T ++V+ ++ +++ AD + +L G ++ L+PD S+
Sbjct: 212 -TRILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLQPDFSSK 256
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139
L+ +N+E+ ++ I+GP+GSGK+TLLRA++ L P SG +F++G ++V +R
Sbjct: 21 LENINLEVNGEKVI-ILGPNGSGKTTLLRAISGLL-PYSGNIFING-----MEVRKIRNY 73
Query: 140 VGMLFQIPALFE-GTVVDNIRY-GPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISV 197
+ +P +E G V++I Y +L+G L + + + ++S
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVYLYEELKG--LDRDLFLEMLKALKLGEEILRRKLYKLSA 131
Query: 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257
GQ+ V + LA++PE++ LDEP +D V+ + K++G ++V+H +
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRH----VISRYIKEYGKEGILVTHELDM 187
Query: 258 IQ 259
+
Sbjct: 188 LN 189
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 111/233 (47%), Gaps = 13/233 (5%)
Query: 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGT 120
+ +R+L S DG ILKGVN+ +PKG + ++GP+G+GKSTL + L + + G
Sbjct: 3 QLEIRDLWA-SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGE 61
Query: 121 VFLDGRDITDLDVLSLRRK-VGMLFQIPALFEGTVVDN-IRYGPQLR-GKKLTENEVY-- 175
+ LDG +I +L RK + + FQ P G + N +R Q + G+++ E +
Sbjct: 62 ILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTK 121
Query: 176 --KXXXXXXXXXXXXNKTGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232
K ++ E S G+ +R + + L EP +LDE S LD I
Sbjct: 122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-IDALK 180
Query: 233 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIA-DVVCLLVNGEIVEVLKPDLLSE 284
+ V + ++++H + + I D V ++++G +V P+L E
Sbjct: 181 VVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALE 233
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV--LSLRRKVGML 143
E+ G I+ ++GP+G+GKSTLL + + G++ G+ + L+L R
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRV 203
Q P F V + L T E+ ++ ++S G+ QRV
Sbjct: 81 QQTPP-FATPVWHYL----TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135
Query: 204 ALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
LA + AN ++LLLD+P ++LD ++ Q+ D ++ + G+ IVM SH +
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDQPMNSLD-VAQQSALDKILSALSQQGLAIVMSSHDLN 194
Query: 257 QIQRIADVVCLLVNGEIV------EVLKPDLLSEAKHPMALRFLQLSG 298
R A LL G+++ EVL P L++A + M R L + G
Sbjct: 195 HTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA-YGMNFRRLDIEG 241
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 23/228 (10%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV--LSLRRKVGML 143
E+ G I+ ++GP+G+GKSTLL + + G++ G+ + L+L R
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRV 203
Q P F V + L T E+ ++ ++S G+ QRV
Sbjct: 81 QQTPP-FATPVWHYL----TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135
Query: 204 ALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
LA + AN ++LLLD+P +LD ++ Q+ D ++ + G+ IVM SH +
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDQPMCSLD-VAQQSALDKILSALSQQGLAIVMSSHDLN 194
Query: 257 QIQRIADVVCLLVNGEIV------EVLKPDLLSEAKHPMALRFLQLSG 298
R A LL G+++ EVL P L++A + M R L + G
Sbjct: 195 HTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQA-YGMNFRRLDIEG 241
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 22/215 (10%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV--LSLRRKVGML 143
E+ G I+ ++GP+G+GKSTLL A G++ G+ + L+L R
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-ARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRV 203
Q P F V + L T E+ ++ ++S G+ QRV
Sbjct: 81 QQTPP-FATPVWHYL----TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135
Query: 204 ALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
LA + AN ++LLLDEP ++LD ++ Q+ D ++ + G+ IV SH +
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILSALSQQGLAIVXSSHDLN 194
Query: 257 QIQRIADVVCLLVNGEIV------EVLKPDLLSEA 285
R A LL G+ + EVL P L++A
Sbjct: 195 HTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 29/231 (12%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVFL 123
+++L +D A IL+G+++++ G + I+GP+GSGKSTL L +E GTV
Sbjct: 23 IKDLHVSVEDKA-ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81
Query: 124 DGRDITDLDVLSLRRKVG----MLFQIPA--------LFEGTVVDNIRYGPQLRGKKLTE 171
G+D+ LS + G M FQ P F T ++ +R RG++ +
Sbjct: 82 KGKDLL---ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR---SYRGQETLD 135
Query: 172 NEVY------KXXXXXXXXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225
+ K S G+ +R + + EPE+ +LDE S L
Sbjct: 136 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 195
Query: 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA-DVVCLLVNGEIVE 275
D + + + D + L+ + ++V+H + + I D V +L G IV+
Sbjct: 196 DIDALKVVADGVNSLRDGK-RSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 103/231 (44%), Gaps = 29/231 (12%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVFL 123
+++L +D A IL+G+++++ G + I+GP+GSGKSTL L +E GTV
Sbjct: 4 IKDLHVSVEDKA-ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 62
Query: 124 DGRDITDLDVLSLRRKVG----MLFQIPA--------LFEGTVVDNIRYGPQLRGKKLTE 171
G+D+ LS + G M FQ P F T ++ +R RG++ +
Sbjct: 63 KGKDLL---ALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR---SYRGQETLD 116
Query: 172 NEVY------KXXXXXXXXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225
+ K S G+ +R + + EPE+ +LDE S L
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGL 176
Query: 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA-DVVCLLVNGEIVE 275
D + + + D + L+ + ++V+H + + I D V +L G IV+
Sbjct: 177 DIDALKVVADGVNSLRDGK-RSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 22/215 (10%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV--LSLRRKVGML 143
E+ G I+ ++GP+G+GKSTLL A G++ G+ + L+L R
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLL-ARXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRV 203
Q P F V + L T E+ ++ ++S G+ QRV
Sbjct: 81 QQTPP-FATPVWHYL----TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRV 135
Query: 204 ALARTL------ANEP-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256
LA + AN ++LLLDEP ++LD ++ Q+ D ++ + G+ IV SH +
Sbjct: 136 RLAAVVLQITPQANPAGQLLLLDEPXNSLD-VAQQSALDKILSALCQQGLAIVXSSHDLN 194
Query: 257 QIQRIADVVCLLVNGEIV------EVLKPDLLSEA 285
R A LL G+ + EVL P L++A
Sbjct: 195 HTLRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-DLDVLSLRRKVGM 142
N E +G I+GI+GP+G GK+T R L G + D +T + +LS + +
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARIL-------VGEITADEGSVTPEKQILSYKPQ--- 337
Query: 143 LFQIPALFEGTVVDNIRYGPQ--LRGKKLTENEVYKXXXXXXXXXXXXNKTGGEISVGQA 200
+I ++GTV + + L EV K N ++S G+
Sbjct: 338 --RIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN----DLSGGEL 391
Query: 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260
Q++ +A TLA E ++ +LD+P+S LD + + ++ ++ ++ H +
Sbjct: 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451
Query: 261 IADVVCLL 268
IAD + +
Sbjct: 452 IADRIIVF 459
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 27/194 (13%)
Query: 92 IMGIIGPSGSGKSTLLRALNRLWEP----PSGTVFLD-------GRDITDL------DVL 134
I+G++G +G GK+T+L+ L P P+ V D G++I + + L
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNEL 86
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGE 194
+ K+ + +GTV + I RGKK E+ NK
Sbjct: 87 KIVHKIQYVEYASKFLKGTV-NEILTKIDERGKKDEVKEL-------LNMTNLWNKDANI 138
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
+S G QR+ +A +L E +V + D+P+S LD N+ + +L K +++V H
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNK--YVIVVDHD 196
Query: 255 IKQIQRIADVVCLL 268
+ + + D++ ++
Sbjct: 197 LIVLDYLTDLIHII 210
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 90 GVIMGIIGPSGSGKSTLLR--------ALNRLWEPPSGT---VFLDGRDITDLDVLSLRR 138
G ++G++G +G GKST L+ L R +PP + G ++ + L
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLED 162
Query: 139 KVGMLFQIPALFEGTVVDNI---------RYGPQLRGKKLTENEVYKXXXXXXXXXXXXN 189
I A+ + VDNI + G L+ + E K
Sbjct: 163 ------DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK 216
Query: 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+ ++S G+ QR A+ + E +V + DEP+S LD N ++ L ++
Sbjct: 217 RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKY-VI 275
Query: 250 MVSHSIKQIQRIADVVCLL 268
V H + + ++D VC++
Sbjct: 276 CVEHDLSVLDYLSDFVCII 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 29/225 (12%)
Query: 51 AEAEDD--NQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLR 108
A+A +D N F L+K D +L E I+ ++G +G+GK+TL++
Sbjct: 339 ADATEDLQNDSASRAFSYPSLKKTQGDF--VLNVEEGEFSDSEILVMMGENGTGKTTLIK 396
Query: 109 ALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK 168
L +P +G+DI L+V S++ + +I F GTV + ++RG+
Sbjct: 397 LLAGALKPD------EGQDIPKLNV-SMKPQ-----KIAPKFPGTVRQ--LFFKKIRGQF 442
Query: 169 LT---ENEVYKXXXXXXXXXXXXNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225
L + +V K G G+ QRVA+ L ++ L+DEP++ L
Sbjct: 443 LNPQFQTDVVKPLRIDDIIDQEVQHLSG----GELQRVAIVLALGIPADIYLIDEPSAYL 498
Query: 226 DPISTQNI--EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268
D S Q I V+ + + T +V H +AD V +
Sbjct: 499 D--SEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVF 541
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 195 ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
+S G+AQRV LA L +N + +LDEPT+ L + DVL +L +G T++++
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVI 602
Query: 252 SHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 295
H++ I + AD + L G+IV V P+ ++E K R+L+
Sbjct: 603 EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 651
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL 107
LK V+++IP G + + G SGSGKSTL+
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 365
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTL 106
LK +++EIP+G ++ + G SGSGKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLL--LDEPTSALDPISTQNIEDVLV---KLKKK 243
+++ G +S G+AQR+ LA + + +L LDEP+ L Q D L+ K +
Sbjct: 197 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLH----QRDNDRLIATLKSMRD 252
Query: 244 HGMTIVMVSH 253
G T+++V H
Sbjct: 253 LGNTLIVVEH 262
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 195 ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
+S G+AQRV LA L +N + +LDEPT+ L + DVL +L +G T++++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVI 904
Query: 252 SHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 295
H++ I + AD + L G+IV V P+ ++E K R+L+
Sbjct: 905 EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL 107
LK V+++IP G + + G SGSGKSTL+
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTL 106
LK +++EIP+G ++ + G SGSGKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLL--LDEPTSALDPISTQNIEDVLV---KLKKK 243
+++ G +S G+AQR+ LA + + +L LDEP+ L Q D L+ K +
Sbjct: 499 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLH----QRDNDRLIATLKSMRD 554
Query: 244 HGMTIVMVSH 253
G T+++V H
Sbjct: 555 LGNTLIVVEH 564
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 11/110 (10%)
Query: 195 ISVGQAQRVALARTL---ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
+S G+AQRV LA L +N + +LDEPT+ L + DVL +L +G T++++
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL-VDNGDTVLVI 904
Query: 252 SHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 295
H++ I + AD + L G+IV V P+ ++E K R+L+
Sbjct: 905 EHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL 107
LK V+++IP G + + G SGSGKSTL+
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLV 667
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTL 106
LK +++EIP+G ++ + G SGSGKS+L
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSL 60
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 189 NKTGGEISVGQAQRVALARTLANEPEVLL--LDEPTSALDPISTQNIEDVLV---KLKKK 243
+++ G +S G+AQR+ LA + + +L LDEP+ L Q D L+ K +
Sbjct: 499 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLH----QRDNDRLIATLKSXRD 554
Query: 244 HGMTIVMVSH 253
G T+++V H
Sbjct: 555 LGNTLIVVEH 564
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 22/179 (12%)
Query: 76 GAPIL-KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
GA IL + + + GI GP+G GKSTL+RA+ +G V DG
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------ANGQV--DG-----FPTQ 492
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGE 194
R V + I T V + + + K+ ++++ + + G
Sbjct: 493 EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSG- 551
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
G ++ALAR + ++LLLDEPT+ LD ++ LV G+T + +SH
Sbjct: 552 ---GWKMKLALARAVLRNADILLLDEPTNHLDTVNVA----WLVNYLNTCGITSITISH 603
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
P + +N + + +IGP+G+GKSTL+ L P SG V+
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
+S GQ ++ LA P +++LDEPT+ LD S L K K+ +++++HS
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL----GALSKALKEFEGGVIIITHS 957
Query: 255 IKQIQRIADVVCLLVNGEIV 274
+ + + + V + +G +
Sbjct: 958 AEFTKNLTEEVWAVKDGRMT 977
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 76 GAPIL-KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
GA IL + + + GI GP+G GKSTL RA+ +G V DG
Sbjct: 440 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DG-----FPTQ 486
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGE 194
R V + I T V + + + K+ ++++ + + G
Sbjct: 487 EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSG- 545
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
G ++ALAR + ++LLLDEPT+ LD ++ LV G+T + +SH
Sbjct: 546 ---GWKXKLALARAVLRNADILLLDEPTNHLDTVNVA----WLVNYLNTCGITSITISH 597
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
P + +N + + +IGP+G+GKSTL+ L P SG V+
Sbjct: 681 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 725
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
+S GQ ++ LA P +++LDEPT+ LD S L K K+ +++++HS
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL----GALSKALKEFEGGVIIITHS 951
Query: 255 IKQIQRIADVVCLLVNG 271
+ + + + V + +G
Sbjct: 952 AEFTKNLTEEVWAVKDG 968
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 76 GAPIL-KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134
GA IL + + + GI GP+G GKSTL RA+ +G V DG
Sbjct: 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DG-----FPTQ 492
Query: 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKXXXXXXXXXXXXNKTGGE 194
R V + I T V + + + K+ ++++ + + G
Sbjct: 493 EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSG- 551
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253
G ++ALAR + ++LLLDEPT+ LD ++ LV G+T + +SH
Sbjct: 552 ---GWKXKLALARAVLRNADILLLDEPTNHLDTVNVA----WLVNYLNTCGITSITISH 603
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF 122
P + +N + + +IGP+G+GKSTL+ L P SG V+
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 195 ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS 254
+S GQ ++ LA P +++LDEPT+ LD S L K K+ +++++HS
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSL----GALSKALKEFEGGVIIITHS 957
Query: 255 IKQIQRIADVVCLLVNG 271
+ + + + V + +G
Sbjct: 958 AEFTKNLTEEVWAVKDG 974
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 194 EISVGQAQRVALA---RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
E+S G+AQR+ LA R V +LDEPT+ L P + ++ LVKL G T++
Sbjct: 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIA 788
Query: 251 VSHSIKQI 258
V H ++ +
Sbjct: 789 VEHKMQVV 796
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 195 ISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252
+S G+ QR+ LA L + V +LDEP++ L P T+ + L LK+ G ++ +V
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVE 438
Query: 253 HSIKQIQR 260
H + I+R
Sbjct: 439 HDLDVIRR 446
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL 107
L +++ P GV+ + G SGSGKSTL+
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLV 540
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 195 ISVGQAQRVALARTLANEPE---VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
+S G+AQR+ LA L + +LDEPT L + + +VL +L + G T++++
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVI 864
Query: 252 SHSIKQIQRIADVVCL-----LVNGEIVEVLKPDLLSEAKHPMALRFLQ 295
H++ I+ ++ L G IV P+ +++ H RFL+
Sbjct: 865 EHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 189 NKTGGEISVGQAQRVALARTLAN--EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
+++ +S G++QR+ LA + + + +LDEPT L P T+ + L KL+ G
Sbjct: 459 SRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GN 517
Query: 247 TIVMVSHSIKQIQRIAD 263
T+++V H +++ R AD
Sbjct: 518 TVIVVEHD-EEVIRNAD 533
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL 107
LK +++EIP GV + + G SGSGKS+L+
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLV 627
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTL 106
LK + + IPK ++ I G SGSGKS+L
Sbjct: 14 LKNITVRIPKNRLVVITGVSGSGKSSL 40
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 189 NKTGGE-ISVGQAQRVALARTL-ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM 246
N +GGE I+V + R+A+A L N E ++LDEPT LD + ++ K+K M
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 247 TIVMVSHSIKQIQRIADVV 265
++++H ++++ +ADV+
Sbjct: 340 --IIITHH-RELEDVADVI 355
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 191 TGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+GGE I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK ++
Sbjct: 250 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VI 308
Query: 250 MVSHSIKQIQRIADVVC 266
+VSH ++++ AD V
Sbjct: 309 LVSHD-EELKDAADHVI 324
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL 110
V+ R SD +G+N+ IIG +GSGKS+LL A+
Sbjct: 8 VKNFRSHSDTVVEFKEGINL---------IIGQNGSGKSSLLDAI 43
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 191 TGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+GGE I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK ++
Sbjct: 59 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VI 117
Query: 250 MVSHSIKQIQRIADVVC 266
+VSH ++++ AD V
Sbjct: 118 LVSHD-EELKDAADHVI 133
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 191 TGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+GGE I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK ++
Sbjct: 270 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VI 328
Query: 250 MVSHSIKQIQRIADVVC 266
+VSH ++++ AD V
Sbjct: 329 LVSHD-EELKDAADHVI 344
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL 110
V+ R SD +G+N+ IIG +GSGKS+LL A+
Sbjct: 8 VKNFRSHSDTVVEFKEGINL---------IIGQNGSGKSSLLDAI 43
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 191 TGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+GGE I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK ++
Sbjct: 85 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VI 143
Query: 250 MVSHSIKQIQRIADVVC 266
+VSH ++++ AD V
Sbjct: 144 LVSHD-EELKDAADHVI 159
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 191 TGGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249
+GGE I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK ++
Sbjct: 90 SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VI 148
Query: 250 MVSHSIKQIQRIADVVC 266
+VSH ++++ AD V
Sbjct: 149 LVSHD-EELKDAADHVI 164
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 192 GGE-ISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250
GGE I++G A R+A++ LA E +L+LDEPT LD + + ++ + KK +++
Sbjct: 56 GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ-VIL 114
Query: 251 VSHSIKQIQRIADVVC 266
VSH ++++ AD V
Sbjct: 115 VSHD-EELKDAADHVI 129
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRA-LNR---LWEPPSGT--------VFLDGRDITDLDV 133
EI + + I+G GKSTL A LN+ L P GT VF+DGR +D
Sbjct: 176 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDT 235
Query: 134 LSLRRK 139
LRRK
Sbjct: 236 AGLRRK 241
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLL 107
L+G+++ P GV+ + G SGSGKSTL+
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTLV 685
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 195 ISVGQAQRVALARTLANEPE---VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251
+S G+AQRV LA L V +LDEPT+ L + + +V+ L K G T++++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-GNTVIVI 922
Query: 252 SHSIKQIQ 259
H++ I+
Sbjct: 923 EHNLDVIK 930
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTL 106
L+ V++++P+ ++ G SGSGKS+L
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSL 62
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 89 KGVIMGIIGPSGSGKSTLLRALNR-LWEPPSGTVFLDGRDI 128
KG ++ + G SGSGKSTL ALN+ L++ LDG ++
Sbjct: 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 85 MEIPKGVIMGIIGPSGSGKSTLLRALNR 112
M PK ++GI G + SGK+TL +AL R
Sbjct: 1 MSAPKPFVIGIAGGTASGKTTLAQALAR 28
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL------NRLWEPPSGTV 121
I + V ++ PKGV++ GP G+GK+ L +A+ N ++ P SG V
Sbjct: 206 IFQRVGIKPPKGVLL--YGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252
>pdb|3JVV|A Chain A, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|B Chain B, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVV|C Chain C, Crystal Structure Of P. Aeruginosa Pilt With Bound Amp-Pcp
pdb|3JVU|A Chain A, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|B Chain B, Crystal Structure Of Unliganded P. Aeruginosa Pilt
pdb|3JVU|C Chain C, Crystal Structure Of Unliganded P. Aeruginosa Pilt
Length = 356
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRAL 110
++P+G+++ + GP+GSGKST L A+
Sbjct: 120 DVPRGLVL-VTGPTGSGKSTTLAAM 143
>pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 195
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL 110
V+ R SD +G+N+ IIG +GSGKS+LL A+
Sbjct: 8 VKNFRSHSDTVVEFKEGINL---------IIGQNGSGKSSLLDAI 43
>pdb|1F2T|A Chain A, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
Length = 149
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL 110
V+ R SD +G+N+ IIG +GSGKS+LL A+
Sbjct: 8 VKNFRSHSDTVVEFKEGINL---------IIGQNGSGKSSLLDAI 43
>pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 203
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL 110
V+ R SD +G+N+ IIG +GSGKS+LL A+
Sbjct: 8 VKNFRSHSDTVVEFKEGINL---------IIGQNGSGKSSLLDAI 43
>pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 147
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL 110
V+ R SD +G+N+ IIG +GSGKS+LL A+
Sbjct: 8 VKNFRSHSDTVVEFKEGINL---------IIGQNGSGKSSLLDAI 43
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111
LK V++E G+ + + GP+G+GKS+L A++
Sbjct: 14 LKNVDIEFQSGITV-VEGPNGAGKSSLFEAIS 44
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 84 NMEIPKGVIMG-----IIGPSGSGKSTLLRALNRLWEPP 117
N + GV +G +IGP+GSGK+ L L RL + P
Sbjct: 40 NGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVP 78
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111
LK V++E G+ + + GP+G+GKS+L A++
Sbjct: 14 LKNVDIEFQSGITV-VEGPNGAGKSSLFEAIS 44
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 84 NMEIPKGVIMG-----IIGPSGSGKSTLLRALNRLWEPP 117
N + GV +G +IGP+GSGK+ L L RL + P
Sbjct: 40 NGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVP 78
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-VFLDGRDITD 130
IP+G I I GP GK+TL A+ + GT F+D D
Sbjct: 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD 115
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133
+IPKGV+M +GP G+GK+ L +A+ + P T+ G D ++ V
Sbjct: 43 KIPKGVLM--VGPPGTGKTLLAKAIAGEAKVPFFTI--SGSDFVEMFV 86
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 382
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111
LK V++E G+ + + GP+G+GKS+L A++
Sbjct: 31 LKNVDIEFQSGITV-VEGPNGAGKSSLFEAIS 61
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120
M+ KG+++ + GPSG GK T+ + R++E PS +
Sbjct: 1 MDNEKGLLIVLSGPSGVGKGTVRK---RIFEDPSTS 33
>pdb|1P9R|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
pdb|1P9W|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
Length = 418
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 88 PKGVIMGIIGPSGSGKSTLLRA 109
P G+I+ + GP+GSGKST L A
Sbjct: 166 PHGIIL-VTGPTGSGKSTTLYA 186
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 77 APILKGVNMEIPKGVIMGIIGPSGSGKST 105
AP + E PKG+ ++GP G+GK T
Sbjct: 3 APSVPAAEPEYPKGIRAVLLGPPGAGKGT 31
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 25 VIQKMPSTCSLFRDEV-----REHLLTVP--GEAEAEDDNQIQKPKFRVRELRKESDDGA 77
V KMP T + D+ + L TV + + D++ ++K VREL +
Sbjct: 92 VTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRK----VRELEEIYSGLY 147
Query: 78 PILK-----GVNME----IPKGVIMGIIGPSGSGKSTLLRALN 111
PI+K G+ +E KG I + G SG GKS+LL A+N
Sbjct: 148 PIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 62 PKFRVRELRKESDDGAPILKGVNM-----EIPKGVIMGIIGPSGSGKSTLLRALNRLWEP 116
P R R ++++ D P L G+ + + G I GP GSGKS ++L + W
Sbjct: 188 PVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAK-WSN 246
Query: 117 PSGTVFLD----GRDITDL 131
V++ G ++TD+
Sbjct: 247 ADVVVYVGSGERGNEMTDV 265
>pdb|3BBN|G Chain G, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 155
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 218 LDEPTSALDPISTQNIEDVLVKLKKKHG---MTIVMVSHSIKQIQRIADVVCLLVNGEIV 274
++E T+ DPI + ++LV KHG + ++ ++K+IQ+ + L V + +
Sbjct: 7 VEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAI 66
Query: 275 EVLKPDLLSEAK 286
+ PD+ +A+
Sbjct: 67 RGVTPDIAVKAR 78
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 85 MEIPKGVIMGIIGPSGSGKSTLLRAL 110
M P+ V++ GPSG+GKSTLL+ L
Sbjct: 1 MAGPRPVVLS--GPSGAGKSTLLKKL 24
>pdb|2F6R|A Chain A, Crystal Structure Of Bifunctional Coenzyme A Synthase (coa
Synthase): (18044849) From Mus Musculus At 1.70 A
Resolution
Length = 281
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 86 EIPKGV-IMGIIGPSGSGKSTLLRALNRL 113
E+P G+ ++G+ G SGSGKS++ + L L
Sbjct: 70 ELPSGLYVLGLTGISGSGKSSVAQRLKNL 98
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 83 VNMEIPKGVIMGIIGPSGSGKSTLLRAL 110
+ +PKG+++ +GP G+GK+ L RA+
Sbjct: 44 IGARMPKGILL--VGPPGTGKTLLARAV 69
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Query: 86 EIPKGVIMGIIGPSGSGKSTLLRAL 110
+IPKGV++ +GP G+GK+ L +A+
Sbjct: 42 KIPKGVLL--VGPPGTGKTLLAKAV 64
>pdb|2K5H|A Chain A, Solution Nmr Structure Of Protein Encoded By Mth693 From
Methanobacterium Thermoautotrophicum: Northeast
Structural Genomics Consortium Target Tt824a
Length = 101
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129
KGV+M I P SG L++ W SGTV G +++
Sbjct: 44 KGVVMEAISPQNSG---LVKVDGETWRATSGTVLDVGEEVS 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,935,743
Number of Sequences: 62578
Number of extensions: 308668
Number of successful extensions: 1340
Number of sequences better than 100.0: 147
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 201
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)