Query 022337
Match_columns 298
No_of_seqs 318 out of 1899
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:46:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 8.4E-69 1.8E-73 464.4 25.0 233 62-297 1-239 (240)
2 COG1135 AbcC ABC-type metal io 100.0 8.7E-66 1.9E-70 465.8 24.1 233 63-296 1-244 (339)
3 COG1125 OpuBA ABC-type proline 100.0 9E-66 1.9E-70 454.4 22.5 233 63-296 1-238 (309)
4 COG1127 Ttg2A ABC-type transpo 100.0 1.5E-62 3.2E-67 431.3 23.5 234 61-295 6-246 (263)
5 COG1120 FepC ABC-type cobalami 100.0 1.7E-62 3.6E-67 441.4 23.9 220 63-284 2-228 (258)
6 COG3842 PotA ABC-type spermidi 100.0 5.3E-62 1.2E-66 455.5 23.2 231 61-295 3-238 (352)
7 COG1124 DppF ABC-type dipeptid 100.0 2.3E-61 4.9E-66 425.0 25.4 236 62-297 2-245 (252)
8 COG3638 ABC-type phosphate/pho 100.0 1E-61 2.2E-66 424.9 21.7 222 62-284 2-237 (258)
9 COG1136 SalX ABC-type antimicr 100.0 5.8E-61 1.3E-65 423.8 25.1 211 63-274 1-221 (226)
10 COG3839 MalK ABC-type sugar tr 100.0 6E-61 1.3E-65 446.2 25.5 230 62-295 2-235 (338)
11 COG1116 TauB ABC-type nitrate/ 100.0 6.2E-61 1.3E-65 425.0 23.8 208 62-276 2-214 (248)
12 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.5E-60 1.6E-64 422.5 25.2 217 61-284 2-227 (254)
13 COG1122 CbiO ABC-type cobalt t 100.0 1.1E-59 2.4E-64 421.1 24.6 222 62-284 2-228 (235)
14 COG2884 FtsE Predicted ATPase 100.0 6.2E-60 1.3E-64 401.4 20.1 214 63-278 1-220 (223)
15 COG1117 PstB ABC-type phosphat 100.0 9.1E-60 2E-64 407.0 20.6 230 61-293 5-247 (253)
16 TIGR02314 ABC_MetN D-methionin 100.0 7.7E-59 1.7E-63 437.8 28.1 231 63-294 1-241 (343)
17 COG1118 CysA ABC-type sulfate/ 100.0 5.1E-59 1.1E-63 421.0 20.7 218 63-284 2-227 (345)
18 PRK11650 ugpC glycerol-3-phosp 100.0 1.1E-57 2.5E-62 432.2 29.4 229 63-294 3-235 (356)
19 cd03261 ABC_Org_Solvent_Resist 100.0 1.2E-57 2.6E-62 408.4 25.7 225 64-290 1-232 (235)
20 PRK11432 fbpC ferric transport 100.0 3E-57 6.5E-62 428.5 29.3 231 61-295 4-238 (351)
21 TIGR03265 PhnT2 putative 2-ami 100.0 5.1E-57 1.1E-61 427.3 28.8 229 62-294 3-235 (353)
22 COG1131 CcmA ABC-type multidru 100.0 2.4E-57 5.2E-62 419.7 25.9 220 62-283 3-225 (293)
23 PRK13537 nodulation ABC transp 100.0 9.8E-57 2.1E-61 418.1 27.4 220 61-284 5-227 (306)
24 PRK09452 potA putrescine/sperm 100.0 1.9E-56 4.2E-61 426.0 29.4 231 60-294 11-245 (375)
25 COG2274 SunT ABC-type bacterio 100.0 1.8E-56 3.9E-61 452.9 30.3 249 34-289 440-701 (709)
26 KOG0058 Peptide exporter, ABC 100.0 1.4E-56 3.1E-61 442.2 28.1 247 38-291 439-698 (716)
27 PRK15079 oligopeptide ABC tran 100.0 2.7E-56 5.8E-61 419.2 27.9 235 61-295 6-263 (331)
28 PRK10851 sulfate/thiosulfate t 100.0 3.7E-56 7.9E-61 421.5 28.6 228 63-294 2-237 (353)
29 COG4175 ProV ABC-type proline/ 100.0 6.7E-57 1.4E-61 408.2 21.8 232 63-295 4-266 (386)
30 TIGR03258 PhnT 2-aminoethylpho 100.0 4.2E-56 9.1E-61 422.1 28.3 218 63-284 5-228 (362)
31 PRK11153 metN DL-methionine tr 100.0 7E-56 1.5E-60 418.4 28.8 221 63-284 1-230 (343)
32 PRK13536 nodulation factor exp 100.0 7.3E-56 1.6E-60 417.5 28.5 221 60-284 38-261 (340)
33 COG4555 NatA ABC-type Na+ tran 100.0 2.8E-57 6E-62 388.4 17.0 219 63-284 1-222 (245)
34 PRK14250 phosphate ABC transpo 100.0 1.3E-55 2.8E-60 397.1 28.8 229 63-294 3-232 (241)
35 PRK11607 potG putrescine trans 100.0 1.2E-55 2.7E-60 420.9 29.9 221 60-284 16-239 (377)
36 COG0411 LivG ABC-type branched 100.0 4.7E-57 1E-61 397.9 18.6 232 61-295 2-249 (250)
37 PRK13647 cbiO cobalt transport 100.0 8.1E-56 1.8E-60 405.9 27.6 220 62-283 3-226 (274)
38 TIGR00960 3a0501s02 Type II (G 100.0 3.5E-56 7.5E-61 393.9 24.1 209 63-273 1-216 (216)
39 PRK11174 cysteine/glutathione 100.0 2.4E-55 5.1E-60 441.1 33.0 219 63-289 349-577 (588)
40 cd03296 ABC_CysA_sulfate_impor 100.0 1.1E-55 2.5E-60 396.7 27.1 218 63-284 2-226 (239)
41 cd03265 ABC_DrrA DrrA is the A 100.0 7.1E-56 1.5E-60 393.2 25.4 216 64-282 1-219 (220)
42 TIGR01186 proV glycine betaine 100.0 6.4E-56 1.4E-60 420.4 26.4 220 72-293 2-229 (363)
43 cd03256 ABC_PhnC_transporter A 100.0 9.9E-56 2.1E-60 396.7 26.2 219 64-283 1-233 (241)
44 PRK11308 dppF dipeptide transp 100.0 1.7E-55 3.6E-60 413.3 28.8 235 61-295 3-256 (327)
45 PRK13637 cbiO cobalt transport 100.0 1.6E-55 3.4E-60 406.6 28.1 221 63-283 2-233 (287)
46 PRK11000 maltose/maltodextrin 100.0 1.5E-55 3.2E-60 419.8 28.8 228 63-294 3-234 (369)
47 PRK09536 btuD corrinoid ABC tr 100.0 1.8E-55 3.9E-60 422.2 28.9 220 62-284 2-228 (402)
48 PRK13643 cbiO cobalt transport 100.0 1.7E-55 3.7E-60 406.6 27.7 221 63-284 1-233 (288)
49 PRK13634 cbiO cobalt transport 100.0 1.6E-55 3.6E-60 407.0 27.6 220 64-283 3-234 (290)
50 TIGR02315 ABC_phnC phosphonate 100.0 1.2E-55 2.5E-60 397.0 25.8 220 63-283 1-234 (243)
51 PRK13631 cbiO cobalt transport 100.0 3.2E-55 6.9E-60 410.2 28.8 223 60-283 18-264 (320)
52 cd03259 ABC_Carb_Solutes_like 100.0 9.8E-56 2.1E-60 390.3 23.8 210 64-277 1-213 (213)
53 COG1132 MdlB ABC-type multidru 100.0 6E-55 1.3E-59 436.7 32.3 225 62-293 327-561 (567)
54 cd03260 ABC_PstB_phosphate_tra 100.0 1.7E-55 3.7E-60 392.3 25.3 214 64-281 1-226 (227)
55 PRK11831 putative ABC transpor 100.0 2.5E-55 5.4E-60 401.5 27.0 223 61-285 5-234 (269)
56 cd03219 ABC_Mj1267_LivG_branch 100.0 1.5E-55 3.3E-60 394.6 24.6 218 64-284 1-232 (236)
57 cd03258 ABC_MetN_methionine_tr 100.0 2.9E-55 6.3E-60 392.3 26.2 221 63-284 1-230 (233)
58 TIGR01288 nodI ATP-binding ABC 100.0 2.8E-55 6E-60 407.8 27.1 220 61-284 2-224 (303)
59 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-54 3.3E-59 442.5 34.8 215 62-286 450-675 (686)
60 PRK13651 cobalt transporter AT 100.0 3.6E-55 7.8E-60 407.4 27.5 221 63-284 2-254 (305)
61 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.8E-55 1.3E-59 392.8 27.4 232 64-295 1-237 (242)
62 PRK13650 cbiO cobalt transport 100.0 5.5E-55 1.2E-59 401.4 27.5 221 62-284 3-229 (279)
63 PRK13636 cbiO cobalt transport 100.0 6.9E-55 1.5E-59 401.5 27.8 223 61-284 3-231 (283)
64 cd03224 ABC_TM1139_LivF_branch 100.0 3.8E-55 8.3E-60 388.4 25.2 217 64-283 1-220 (222)
65 TIGR02769 nickel_nikE nickel i 100.0 5.9E-55 1.3E-59 398.2 27.0 232 63-294 2-250 (265)
66 PRK13646 cbiO cobalt transport 100.0 6.7E-55 1.4E-59 402.2 27.6 222 63-284 2-235 (286)
67 PRK11022 dppD dipeptide transp 100.0 6.1E-55 1.3E-59 409.3 27.3 233 63-295 3-255 (326)
68 COG3840 ThiQ ABC-type thiamine 100.0 1.6E-55 3.5E-60 372.2 20.5 216 63-284 1-219 (231)
69 cd03263 ABC_subfamily_A The AB 100.0 5.1E-55 1.1E-59 387.3 24.8 215 64-282 1-219 (220)
70 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.8E-55 8.2E-60 387.6 23.6 208 64-273 1-218 (218)
71 cd03266 ABC_NatA_sodium_export 100.0 6E-55 1.3E-59 386.3 24.7 212 63-277 1-218 (218)
72 PRK10070 glycine betaine trans 100.0 1.4E-54 3E-59 415.8 29.1 214 79-293 43-264 (400)
73 PRK15093 antimicrobial peptide 100.0 1.3E-54 2.9E-59 407.8 28.2 234 62-295 2-260 (330)
74 cd03218 ABC_YhbG The ABC trans 100.0 1.1E-54 2.4E-59 388.1 26.2 218 64-284 1-222 (232)
75 cd03268 ABC_BcrA_bacitracin_re 100.0 5.6E-55 1.2E-59 384.1 23.9 207 64-277 1-208 (208)
76 PRK11629 lolD lipoprotein tran 100.0 1.4E-54 2.9E-59 388.3 26.8 216 61-278 3-228 (233)
77 PRK09473 oppD oligopeptide tra 100.0 1.2E-54 2.6E-59 407.9 27.6 236 60-295 9-263 (330)
78 cd03226 ABC_cobalt_CbiO_domain 100.0 6.1E-55 1.3E-59 383.2 24.0 203 65-274 1-205 (205)
79 COG0444 DppD ABC-type dipeptid 100.0 6.3E-55 1.4E-59 398.8 24.8 233 64-296 2-256 (316)
80 PRK13652 cbiO cobalt transport 100.0 1.9E-54 4E-59 397.5 28.0 222 62-284 2-227 (277)
81 COG4988 CydD ABC-type transpor 100.0 2.6E-54 5.6E-59 418.8 30.3 223 63-293 320-552 (559)
82 PRK10790 putative multidrug tr 100.0 5.9E-54 1.3E-58 431.4 34.0 222 62-291 339-570 (592)
83 cd03293 ABC_NrtD_SsuB_transpor 100.0 9.1E-55 2E-59 386.1 24.7 211 64-280 1-219 (220)
84 cd03301 ABC_MalK_N The N-termi 100.0 7E-55 1.5E-59 384.6 23.8 210 64-277 1-213 (213)
85 COG0410 LivF ABC-type branched 100.0 1.5E-54 3.3E-59 379.2 25.6 231 62-294 2-235 (237)
86 PRK11614 livF leucine/isoleuci 100.0 1.6E-54 3.6E-59 388.5 26.6 221 61-284 3-226 (237)
87 PRK09493 glnQ glutamine ABC tr 100.0 2E-54 4.3E-59 388.7 27.1 219 63-284 1-225 (240)
88 TIGR00972 3a0107s01c2 phosphat 100.0 2.5E-54 5.4E-59 389.8 27.5 228 63-293 1-242 (247)
89 cd03257 ABC_NikE_OppD_transpor 100.0 1.6E-54 3.4E-59 385.7 25.7 215 63-277 1-228 (228)
90 PRK13641 cbiO cobalt transport 100.0 1.9E-54 4.2E-59 399.3 27.0 221 63-284 2-234 (287)
91 PRK11176 lipid transporter ATP 100.0 6E-54 1.3E-58 430.4 32.7 223 63-291 341-574 (582)
92 PRK10575 iron-hydroxamate tran 100.0 2.4E-54 5.2E-59 394.2 27.2 223 60-284 8-237 (265)
93 TIGR02673 FtsE cell division A 100.0 8.8E-55 1.9E-59 384.2 23.5 208 63-272 1-214 (214)
94 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3E-54 6.5E-59 386.8 27.1 228 63-294 1-233 (236)
95 COG1123 ATPase components of v 100.0 1.1E-54 2.4E-59 422.4 25.8 237 60-296 277-532 (539)
96 PRK11300 livG leucine/isoleuci 100.0 3.8E-54 8.2E-59 390.0 27.6 222 61-284 3-243 (255)
97 PRK13548 hmuV hemin importer A 100.0 3.7E-54 8.1E-59 391.6 27.5 220 63-284 2-230 (258)
98 PRK11264 putative amino-acid A 100.0 4.1E-54 8.9E-59 388.7 27.4 219 63-284 3-233 (250)
99 PRK14273 phosphate ABC transpo 100.0 5.5E-54 1.2E-58 389.1 28.2 231 61-294 5-249 (254)
100 TIGR03522 GldA_ABC_ATP gliding 100.0 2.4E-54 5.3E-59 401.2 26.4 217 63-284 2-221 (301)
101 PRK10908 cell division protein 100.0 3.2E-54 6.9E-59 383.1 26.0 211 63-275 1-217 (222)
102 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 6.1E-54 1.3E-58 439.6 31.7 215 62-285 476-701 (710)
103 PRK14242 phosphate transporter 100.0 5.8E-54 1.3E-58 388.6 27.8 222 60-284 3-237 (253)
104 PRK13635 cbiO cobalt transport 100.0 5.1E-54 1.1E-58 395.0 27.8 221 61-283 3-228 (279)
105 TIGR01188 drrA daunorubicin re 100.0 1.7E-54 3.6E-59 402.4 24.7 210 71-284 1-213 (302)
106 PRK14269 phosphate ABC transpo 100.0 5.8E-54 1.3E-58 387.4 27.5 230 63-295 2-242 (246)
107 KOG0057 Mitochondrial Fe/S clu 100.0 3.5E-54 7.5E-59 413.4 27.3 216 62-285 350-575 (591)
108 PRK14247 phosphate ABC transpo 100.0 7E-54 1.5E-58 387.4 27.8 230 62-294 2-245 (250)
109 cd03292 ABC_FtsE_transporter F 100.0 2.2E-54 4.8E-59 381.4 23.5 208 64-273 1-214 (214)
110 PRK11160 cysteine/glutathione 100.0 2.2E-53 4.8E-58 426.1 33.6 218 62-287 337-565 (574)
111 PRK14268 phosphate ABC transpo 100.0 9.7E-54 2.1E-58 388.6 28.1 232 60-294 9-253 (258)
112 PRK13638 cbiO cobalt transport 100.0 5.2E-54 1.1E-58 393.1 26.3 219 63-284 1-225 (271)
113 cd03264 ABC_drug_resistance_li 100.0 2.6E-54 5.6E-59 380.7 23.4 208 64-277 1-211 (211)
114 PRK11247 ssuB aliphatic sulfon 100.0 8.9E-54 1.9E-58 389.2 27.4 209 61-280 10-219 (257)
115 PRK15112 antimicrobial peptide 100.0 7.9E-54 1.7E-58 391.2 27.1 233 61-293 2-249 (267)
116 TIGR02211 LolD_lipo_ex lipopro 100.0 5.3E-54 1.2E-58 381.0 25.2 210 63-274 1-220 (221)
117 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.7E-54 8.1E-59 393.9 24.9 228 65-294 26-261 (269)
118 PRK10253 iron-enterobactin tra 100.0 7.4E-54 1.6E-58 390.9 26.7 222 61-284 5-233 (265)
119 TIGR03410 urea_trans_UrtE urea 100.0 5.5E-54 1.2E-58 383.3 25.3 217 64-283 1-220 (230)
120 TIGR01193 bacteriocin_ABC ABC- 100.0 1.3E-53 2.9E-58 437.0 31.6 217 62-285 472-698 (708)
121 PRK13644 cbiO cobalt transport 100.0 9E-54 2E-58 392.4 27.1 219 63-284 1-224 (274)
122 PRK11124 artP arginine transpo 100.0 9.4E-54 2E-58 384.8 26.7 227 63-292 2-238 (242)
123 COG1137 YhbG ABC-type (unclass 100.0 1.6E-55 3.5E-60 377.1 14.3 221 62-285 3-229 (243)
124 TIGR03005 ectoine_ehuA ectoine 100.0 9.2E-54 2E-58 387.2 26.6 229 64-294 1-247 (252)
125 PRK13649 cbiO cobalt transport 100.0 6.9E-54 1.5E-58 393.9 26.2 221 63-284 2-234 (280)
126 PRK10895 lipopolysaccharide AB 100.0 8.2E-54 1.8E-58 384.9 26.0 220 62-284 2-226 (241)
127 PRK14235 phosphate transporter 100.0 1.4E-53 3E-58 389.6 28.0 232 59-293 15-261 (267)
128 PRK14267 phosphate ABC transpo 100.0 1.1E-53 2.4E-58 386.6 26.9 230 62-294 3-248 (253)
129 PRK11231 fecE iron-dicitrate t 100.0 1E-53 2.2E-58 387.8 26.6 219 63-284 2-227 (255)
130 TIGR03411 urea_trans_UrtD urea 100.0 1E-53 2.2E-58 384.3 26.4 219 62-284 1-231 (242)
131 PRK10619 histidine/lysine/argi 100.0 1.6E-53 3.5E-58 386.8 27.9 222 61-284 3-241 (257)
132 PRK13639 cbiO cobalt transport 100.0 1.1E-53 2.5E-58 391.8 27.0 220 63-284 1-226 (275)
133 cd03225 ABC_cobalt_CbiO_domain 100.0 4.7E-54 1E-58 378.8 23.5 206 65-272 1-211 (211)
134 PRK10584 putative ABC transpor 100.0 1.1E-53 2.4E-58 380.9 26.1 213 62-276 5-227 (228)
135 cd03269 ABC_putative_ATPase Th 100.0 4.4E-54 9.5E-59 378.9 23.2 207 64-277 1-210 (210)
136 PRK10247 putative ABC transpor 100.0 6.8E-54 1.5E-58 382.2 24.6 217 61-279 5-222 (225)
137 PRK13645 cbiO cobalt transport 100.0 1.4E-53 2.9E-58 393.9 27.4 222 62-283 5-239 (289)
138 PRK13632 cbiO cobalt transport 100.0 1.3E-53 2.8E-58 390.6 26.1 222 61-284 5-231 (271)
139 PRK14259 phosphate ABC transpo 100.0 3.4E-53 7.4E-58 387.5 28.8 232 60-294 10-264 (269)
140 TIGR03375 type_I_sec_LssB type 100.0 3.5E-53 7.6E-58 433.0 32.0 216 62-284 462-688 (694)
141 PRK13640 cbiO cobalt transport 100.0 2.1E-53 4.6E-58 391.4 27.4 221 61-283 3-231 (282)
142 TIGR03415 ABC_choXWV_ATP choli 100.0 1.8E-53 3.9E-58 405.7 27.7 225 68-294 29-265 (382)
143 TIGR00958 3a01208 Conjugate Tr 100.0 3.9E-53 8.4E-58 433.6 32.2 215 62-285 477-703 (711)
144 KOG0055 Multidrug/pheromone ex 100.0 4E-54 8.7E-59 445.0 25.0 219 61-286 348-578 (1228)
145 PRK13633 cobalt transporter AT 100.0 2E-53 4.2E-58 391.3 26.8 221 62-284 3-233 (280)
146 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.1E-53 4.5E-58 374.9 25.7 208 64-277 1-211 (211)
147 PRK13657 cyclic beta-1,2-gluca 100.0 9.5E-53 2.1E-57 422.5 34.0 217 62-285 333-559 (588)
148 COG4987 CydC ABC-type transpor 100.0 8.3E-54 1.8E-58 410.4 25.0 223 63-293 336-569 (573)
149 PRK11701 phnK phosphonate C-P 100.0 4E-53 8.6E-58 384.4 28.2 233 61-294 4-252 (258)
150 PRK10744 pstB phosphate transp 100.0 3.8E-53 8.2E-58 385.1 28.1 221 61-284 11-244 (260)
151 cd03235 ABC_Metallic_Cations A 100.0 5.2E-54 1.1E-58 379.2 21.8 203 65-276 1-212 (213)
152 PRK10771 thiQ thiamine transpo 100.0 3.8E-53 8.3E-58 378.7 27.6 225 63-294 1-228 (232)
153 PRK14274 phosphate ABC transpo 100.0 4.3E-53 9.2E-58 384.5 27.9 231 60-293 9-253 (259)
154 PRK11248 tauB taurine transpor 100.0 2.9E-53 6.2E-58 385.3 26.7 210 63-279 1-215 (255)
155 PRK09984 phosphonate/organopho 100.0 4E-53 8.7E-58 385.2 27.4 219 62-282 3-240 (262)
156 PRK14245 phosphate ABC transpo 100.0 5.6E-53 1.2E-57 381.6 28.2 230 62-294 2-245 (250)
157 PRK13648 cbiO cobalt transport 100.0 3.9E-53 8.4E-58 387.0 27.2 222 61-284 5-231 (269)
158 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-53 3.1E-58 376.0 23.5 207 64-273 1-213 (213)
159 KOG0055 Multidrug/pheromone ex 100.0 2.5E-53 5.5E-58 439.1 29.0 281 3-290 922-1219(1228)
160 PRK14248 phosphate ABC transpo 100.0 8.4E-53 1.8E-57 384.5 28.7 230 61-293 19-262 (268)
161 PRK11144 modC molybdate transp 100.0 3.3E-53 7.1E-58 401.5 26.8 213 63-284 1-218 (352)
162 TIGR03873 F420-0_ABC_ATP propo 100.0 4.2E-53 9E-58 383.9 26.3 218 64-284 2-226 (256)
163 PRK14251 phosphate ABC transpo 100.0 9.2E-53 2E-57 380.3 28.2 231 62-295 3-247 (251)
164 TIGR01978 sufC FeS assembly AT 100.0 3.1E-53 6.8E-58 381.0 25.0 218 64-283 1-233 (243)
165 PRK14270 phosphate ABC transpo 100.0 9.1E-53 2E-57 380.5 28.1 230 61-293 2-245 (251)
166 PRK13642 cbiO cobalt transport 100.0 8.7E-53 1.9E-57 386.4 27.4 221 62-284 3-229 (277)
167 PRK10419 nikE nickel transport 100.0 8.2E-53 1.8E-57 384.8 27.1 233 62-294 2-251 (268)
168 PRK14239 phosphate transporter 100.0 1.5E-52 3.3E-57 378.9 28.5 221 61-284 3-236 (252)
169 TIGR02203 MsbA_lipidA lipid A 100.0 2.1E-52 4.5E-57 418.1 32.3 218 62-285 329-557 (571)
170 TIGR02142 modC_ABC molybdenum 100.0 5.3E-53 1.2E-57 400.4 26.1 213 68-284 4-221 (354)
171 PRK14240 phosphate transporter 100.0 1.7E-52 3.8E-57 378.3 28.2 228 63-293 3-244 (250)
172 TIGR02323 CP_lyasePhnK phospho 100.0 1.3E-52 2.9E-57 379.6 27.4 233 62-295 2-250 (253)
173 PRK14256 phosphate ABC transpo 100.0 2.2E-52 4.8E-57 378.2 28.2 230 62-294 3-247 (252)
174 PRK10261 glutathione transport 100.0 9.3E-53 2E-57 425.0 28.6 235 61-295 311-565 (623)
175 PRK14257 phosphate ABC transpo 100.0 2.3E-52 5E-57 392.2 29.0 232 61-294 78-324 (329)
176 PRK14249 phosphate ABC transpo 100.0 3.2E-52 7E-57 376.9 28.8 220 62-284 3-235 (251)
177 PRK13547 hmuV hemin importer A 100.0 1.4E-52 3.1E-57 384.2 26.6 220 63-284 1-244 (272)
178 PRK14241 phosphate transporter 100.0 2E-52 4.3E-57 379.8 27.2 219 63-284 4-242 (258)
179 PRK14262 phosphate ABC transpo 100.0 2.6E-52 5.7E-57 377.1 27.8 229 62-293 2-244 (250)
180 PRK14261 phosphate ABC transpo 100.0 3E-52 6.4E-57 377.5 27.9 232 61-295 4-249 (253)
181 cd03252 ABCC_Hemolysin The ABC 100.0 2.1E-52 4.5E-57 374.7 26.5 214 64-285 1-226 (237)
182 PRK14253 phosphate ABC transpo 100.0 3.6E-52 7.9E-57 375.9 28.1 220 62-284 2-233 (249)
183 TIGR01277 thiQ thiamine ABC tr 100.0 1.9E-52 4.1E-57 369.7 25.5 209 64-278 1-212 (213)
184 TIGR01846 type_I_sec_HlyB type 100.0 5.6E-52 1.2E-56 424.2 32.8 224 62-292 454-688 (694)
185 PRK14237 phosphate transporter 100.0 6E-52 1.3E-56 378.9 29.1 222 60-284 17-251 (267)
186 PRK14254 phosphate ABC transpo 100.0 6.2E-52 1.3E-56 382.3 29.2 222 60-284 36-269 (285)
187 PRK14238 phosphate transporter 100.0 4.5E-52 9.7E-57 380.6 28.0 231 61-294 22-266 (271)
188 TIGR03740 galliderm_ABC gallid 100.0 3E-52 6.5E-57 370.6 26.0 209 64-281 1-210 (223)
189 PRK10789 putative multidrug tr 100.0 9.7E-52 2.1E-56 413.8 32.7 221 62-289 312-543 (569)
190 cd03300 ABC_PotA_N PotA is an 100.0 2.6E-52 5.6E-57 373.5 25.6 227 64-294 1-231 (232)
191 cd03297 ABC_ModC_molybdenum_tr 100.0 1.5E-52 3.2E-57 370.5 23.6 208 64-277 2-214 (214)
192 PRK14275 phosphate ABC transpo 100.0 4.5E-52 9.8E-57 383.4 27.8 232 60-294 36-281 (286)
193 PRK14243 phosphate transporter 100.0 5.7E-52 1.2E-56 378.4 27.7 229 61-292 8-257 (264)
194 TIGR01192 chvA glucan exporter 100.0 1.7E-51 3.7E-56 413.2 33.7 221 62-289 333-563 (585)
195 cd03251 ABCC_MsbA MsbA is an e 100.0 2E-52 4.3E-57 374.0 23.9 217 64-284 1-225 (234)
196 COG4181 Predicted ABC-type tra 100.0 5.7E-53 1.2E-57 353.7 18.9 212 63-276 6-227 (228)
197 PRK10418 nikD nickel transport 100.0 6.2E-52 1.3E-56 376.0 27.4 218 63-284 4-230 (254)
198 cd03254 ABCC_Glucan_exporter_l 100.0 3.6E-52 7.8E-57 371.2 25.1 214 63-283 2-225 (229)
199 TIGR00968 3a0106s01 sulfate AB 100.0 6.8E-52 1.5E-56 372.1 27.1 228 64-295 1-232 (237)
200 cd03289 ABCC_CFTR2 The CFTR su 100.0 5E-52 1.1E-56 381.0 26.6 212 63-284 2-225 (275)
201 PRK14244 phosphate ABC transpo 100.0 4.3E-52 9.3E-57 376.1 25.8 228 63-293 5-247 (251)
202 cd03245 ABCC_bacteriocin_expor 100.0 3.9E-52 8.4E-57 368.8 24.9 205 64-276 3-219 (220)
203 COG4598 HisP ABC-type histidin 100.0 2.7E-53 5.9E-58 358.3 16.4 232 61-295 4-253 (256)
204 cd03299 ABC_ModC_like Archeal 100.0 6.3E-52 1.4E-56 371.8 26.4 227 64-295 1-231 (235)
205 PRK14272 phosphate ABC transpo 100.0 7.6E-52 1.6E-56 374.3 26.9 228 63-293 4-246 (252)
206 cd03253 ABCC_ATM1_transporter 100.0 5E-52 1.1E-56 371.8 25.3 215 64-285 1-225 (236)
207 PRK10762 D-ribose transporter 100.0 2.7E-52 5.9E-57 412.0 25.9 218 62-282 3-228 (501)
208 PRK14236 phosphate transporter 100.0 1.6E-51 3.4E-56 377.0 28.8 221 61-284 23-256 (272)
209 PRK15439 autoinducer 2 ABC tra 100.0 7.5E-52 1.6E-56 409.7 28.8 218 61-283 9-228 (510)
210 PRK13549 xylose transporter AT 100.0 3.3E-52 7.1E-57 411.9 26.0 220 61-283 3-231 (506)
211 PRK09700 D-allose transporter 100.0 4.3E-52 9.2E-57 411.4 26.8 220 61-283 3-233 (510)
212 TIGR02204 MsbA_rel ABC transpo 100.0 2.6E-51 5.5E-56 410.8 32.7 217 62-285 336-564 (576)
213 PRK14271 phosphate ABC transpo 100.0 1.2E-51 2.6E-56 378.8 27.7 222 60-284 18-251 (276)
214 COG1123 ATPase components of v 100.0 3E-52 6.5E-57 405.4 25.0 235 62-296 4-257 (539)
215 TIGR01842 type_I_sec_PrtD type 100.0 2.6E-51 5.5E-56 408.7 32.2 216 62-283 315-541 (544)
216 PRK15134 microcin C ABC transp 100.0 3.8E-52 8.3E-57 413.4 25.9 236 60-296 272-528 (529)
217 PRK14265 phosphate ABC transpo 100.0 1.8E-51 3.8E-56 377.2 28.2 231 60-293 17-268 (274)
218 PRK14258 phosphate ABC transpo 100.0 1.5E-51 3.2E-56 375.0 27.5 222 62-284 6-245 (261)
219 PRK14255 phosphate ABC transpo 100.0 2.2E-51 4.7E-56 371.5 28.3 221 61-284 3-236 (252)
220 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 5.9E-52 1.3E-56 372.0 24.3 213 64-284 1-226 (238)
221 COG4559 ABC-type hemin transpo 100.0 3.1E-52 6.8E-57 359.8 21.2 219 63-284 1-230 (259)
222 PRK14260 phosphate ABC transpo 100.0 1.9E-51 4.1E-56 373.8 27.0 229 62-293 6-253 (259)
223 PTZ00265 multidrug resistance 100.0 2E-51 4.4E-56 445.0 31.9 218 62-284 1164-1452(1466)
224 PRK14246 phosphate ABC transpo 100.0 2.3E-51 5.1E-56 373.1 26.2 231 60-293 7-251 (257)
225 cd03244 ABCC_MRP_domain2 Domai 100.0 2.3E-51 5.1E-56 364.1 25.0 206 64-278 3-220 (221)
226 COG4604 CeuD ABC-type enteroch 100.0 7.2E-53 1.6E-57 360.1 13.8 221 63-285 1-226 (252)
227 PLN03130 ABC transporter C fam 100.0 8.3E-51 1.8E-55 443.7 33.7 216 62-285 1236-1462(1622)
228 TIGR02982 heterocyst_DevA ABC 100.0 2.3E-51 5E-56 364.4 23.7 208 64-273 2-219 (220)
229 PRK14263 phosphate ABC transpo 100.0 1E-50 2.2E-55 369.8 28.4 230 61-293 6-255 (261)
230 CHL00131 ycf16 sulfate ABC tra 100.0 5.5E-51 1.2E-55 368.7 26.4 220 61-282 5-239 (252)
231 PRK15056 manganese/iron transp 100.0 4.6E-51 1E-55 373.9 26.0 216 62-283 5-229 (272)
232 PRK14252 phosphate ABC transpo 100.0 1.5E-50 3.2E-55 369.1 29.1 231 60-293 13-259 (265)
233 PRK14266 phosphate ABC transpo 100.0 1.3E-50 2.7E-55 366.1 28.1 228 63-293 3-244 (250)
234 PRK10261 glutathione transport 100.0 3E-51 6.5E-56 414.0 26.0 224 61-284 10-258 (623)
235 cd03248 ABCC_TAP TAP, the Tran 100.0 2.5E-51 5.4E-56 365.2 22.5 210 60-273 8-226 (226)
236 cd03369 ABCC_NFT1 Domain 2 of 100.0 8.8E-51 1.9E-55 357.3 25.6 202 62-279 5-207 (207)
237 PLN03232 ABC transporter C fam 100.0 1.5E-50 3.3E-55 440.5 32.7 217 62-286 1233-1460(1495)
238 PRK15134 microcin C ABC transp 100.0 5.5E-51 1.2E-55 405.1 26.3 224 61-284 3-246 (529)
239 PRK14264 phosphate ABC transpo 100.0 1.9E-50 4.2E-55 375.7 28.1 221 61-284 43-289 (305)
240 cd03234 ABCG_White The White s 100.0 5.5E-51 1.2E-55 363.4 23.3 210 63-277 3-226 (226)
241 cd03267 ABC_NatA_like Similar 100.0 4.1E-51 8.8E-56 366.9 22.4 204 71-277 29-236 (236)
242 PRK11288 araG L-arabinose tran 100.0 1.1E-50 2.4E-55 400.5 27.5 215 62-279 3-224 (501)
243 TIGR02633 xylG D-xylose ABC tr 100.0 7.1E-51 1.5E-55 401.7 25.9 218 63-282 1-228 (500)
244 TIGR02857 CydD thiol reductant 100.0 2.6E-50 5.6E-55 400.0 30.1 200 62-268 319-529 (529)
245 COG4152 ABC-type uncharacteriz 100.0 6.9E-52 1.5E-56 364.2 16.1 215 63-284 2-219 (300)
246 TIGR03608 L_ocin_972_ABC putat 100.0 5.1E-51 1.1E-55 358.0 21.6 199 66-268 1-206 (206)
247 TIGR02868 CydC thiol reductant 100.0 1.5E-50 3.3E-55 401.7 27.6 187 62-255 333-529 (529)
248 cd03288 ABCC_SUR2 The SUR doma 100.0 3.5E-50 7.5E-55 365.2 27.3 216 61-285 17-244 (257)
249 PRK13538 cytochrome c biogenes 100.0 1.2E-50 2.7E-55 356.0 23.0 201 63-268 1-202 (204)
250 COG4608 AppF ABC-type oligopep 100.0 5.7E-51 1.2E-55 365.6 21.0 202 61-296 2-212 (268)
251 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-50 3.3E-55 401.1 26.1 224 60-283 276-516 (520)
252 PRK13543 cytochrome c biogenes 100.0 2.3E-50 5E-55 356.9 24.3 203 61-270 9-212 (214)
253 PRK13549 xylose transporter AT 100.0 1.1E-50 2.3E-55 401.1 24.5 222 61-283 257-493 (506)
254 TIGR01184 ntrCD nitrate transp 100.0 1.1E-50 2.4E-55 362.7 22.3 197 80-282 1-202 (230)
255 PRK03695 vitamin B12-transport 100.0 2.1E-50 4.5E-55 365.0 24.3 212 65-284 2-222 (248)
256 PRK10938 putative molybdenum t 100.0 1.2E-50 2.6E-55 399.1 24.5 212 63-283 3-223 (490)
257 TIGR00957 MRP_assoc_pro multi 100.0 7.4E-50 1.6E-54 435.7 33.1 217 62-286 1283-1510(1522)
258 PRK10982 galactose/methyl gala 100.0 1.4E-50 3E-55 398.9 24.7 214 66-282 1-221 (491)
259 PRK09544 znuC high-affinity zi 100.0 4.2E-50 9E-55 363.9 25.8 204 62-284 3-209 (251)
260 TIGR02770 nickel_nikD nickel i 100.0 3E-50 6.6E-55 359.7 24.4 204 79-284 1-215 (230)
261 PRK09580 sufC cysteine desulfu 100.0 4.8E-50 1E-54 361.5 25.8 218 63-282 1-233 (248)
262 cd03246 ABCC_Protease_Secretio 100.0 2.7E-50 5.9E-55 345.2 22.4 172 64-273 1-173 (173)
263 TIGR02324 CP_lyasePhnL phospho 100.0 3.3E-50 7.2E-55 357.6 23.3 205 63-268 1-222 (224)
264 PTZ00243 ABC transporter; Prov 100.0 1.8E-49 4E-54 432.4 34.1 215 63-285 1308-1534(1560)
265 TIGR03269 met_CoM_red_A2 methy 100.0 2E-50 4.3E-55 400.3 24.2 218 64-283 1-257 (520)
266 PRK10522 multidrug transporter 100.0 1.7E-49 3.8E-54 395.8 31.1 206 62-277 321-531 (547)
267 COG4525 TauB ABC-type taurine 100.0 1.5E-50 3.3E-55 345.5 19.7 212 62-280 2-220 (259)
268 cd03230 ABC_DR_subfamily_A Thi 100.0 4.5E-50 9.7E-55 343.9 22.7 172 64-273 1-173 (173)
269 cd03229 ABC_Class3 This class 100.0 4.3E-50 9.4E-55 345.5 22.7 175 64-272 1-178 (178)
270 COG4172 ABC-type uncharacteriz 100.0 6.5E-50 1.4E-54 372.2 25.5 236 60-296 273-529 (534)
271 PRK09700 D-allose transporter 100.0 3.2E-50 6.9E-55 398.0 25.0 215 61-279 263-493 (510)
272 cd03231 ABC_CcmA_heme_exporter 100.0 5E-50 1.1E-54 351.5 23.5 197 64-268 1-198 (201)
273 cd03247 ABCC_cytochrome_bd The 100.0 4.1E-50 9E-55 345.5 21.7 177 64-277 1-178 (178)
274 COG1129 MglA ABC-type sugar tr 100.0 5.3E-50 1.1E-54 387.3 24.9 219 61-282 6-233 (500)
275 COG4619 ABC-type uncharacteriz 100.0 2.4E-51 5.3E-56 342.9 12.9 210 64-274 4-213 (223)
276 cd03215 ABC_Carb_Monos_II This 100.0 9.7E-50 2.1E-54 344.5 22.5 176 61-273 2-182 (182)
277 cd03214 ABC_Iron-Siderophores_ 100.0 5.8E-50 1.3E-54 345.3 20.9 179 65-276 1-179 (180)
278 cd03233 ABC_PDR_domain1 The pl 100.0 1.4E-49 3E-54 349.2 23.4 192 63-277 3-202 (202)
279 TIGR02633 xylG D-xylose ABC tr 100.0 9.8E-50 2.1E-54 393.6 24.3 221 61-282 255-490 (500)
280 cd03213 ABCG_EPDR ABCG transpo 100.0 2.1E-49 4.5E-54 346.0 22.6 182 63-276 3-193 (194)
281 PTZ00265 multidrug resistance 100.0 8.2E-49 1.8E-53 424.8 32.0 208 63-271 382-655 (1466)
282 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.4E-48 3E-53 390.0 30.1 206 62-277 336-552 (555)
283 COG4161 ArtP ABC-type arginine 100.0 8.9E-50 1.9E-54 332.0 17.8 227 63-292 2-238 (242)
284 TIGR01189 ccmA heme ABC export 100.0 2.2E-49 4.8E-54 346.3 21.2 196 64-267 1-197 (198)
285 cd03232 ABC_PDR_domain2 The pl 100.0 3.7E-49 7.9E-54 343.8 21.9 182 63-277 3-192 (192)
286 PRK13539 cytochrome c biogenes 100.0 4.1E-49 9E-54 347.2 22.5 198 63-270 2-200 (207)
287 KOG0056 Heavy metal exporter H 100.0 8.7E-50 1.9E-54 377.9 19.3 218 61-285 535-762 (790)
288 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.9E-49 1.7E-53 343.8 23.9 185 64-280 1-190 (200)
289 PRK13540 cytochrome c biogenes 100.0 4.1E-49 8.9E-54 345.3 21.9 196 63-266 1-197 (200)
290 cd03228 ABCC_MRP_Like The MRP 100.0 4.9E-49 1.1E-53 336.9 21.3 170 64-272 1-171 (171)
291 cd03290 ABCC_SUR1_N The SUR do 100.0 9.2E-49 2E-53 347.1 23.5 201 65-272 2-218 (218)
292 PRK10762 D-ribose transporter 100.0 7E-49 1.5E-53 387.7 24.9 216 61-283 255-483 (501)
293 TIGR01166 cbiO cobalt transpor 100.0 2.8E-49 6E-54 343.4 19.2 181 75-257 3-189 (190)
294 cd03250 ABCC_MRP_domain1 Domai 100.0 9.9E-49 2.1E-53 343.6 22.8 189 64-272 1-204 (204)
295 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.3E-49 1.4E-53 350.2 21.8 199 64-277 23-224 (224)
296 PRK11288 araG L-arabinose tran 100.0 6.6E-49 1.4E-53 387.9 23.3 217 61-283 255-484 (501)
297 TIGR01257 rim_protein retinal- 100.0 1.7E-48 3.8E-53 425.5 27.6 221 61-284 1935-2159(2272)
298 COG3845 ABC-type uncharacteriz 100.0 1.3E-48 2.8E-53 371.9 23.0 214 62-278 3-223 (501)
299 COG4148 ModC ABC-type molybdat 100.0 3E-49 6.6E-54 353.2 17.0 201 78-284 13-218 (352)
300 TIGR01257 rim_protein retinal- 100.0 3.9E-48 8.5E-53 422.7 28.2 220 61-284 926-1149(2272)
301 cd03216 ABC_Carb_Monos_I This 100.0 7.6E-48 1.6E-52 327.4 23.2 161 64-275 1-162 (163)
302 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.5E-47 7.7E-52 350.1 29.4 226 34-284 11-247 (282)
303 TIGR01271 CFTR_protein cystic 100.0 3.5E-47 7.5E-52 413.9 34.1 214 62-284 1216-1440(1490)
304 PRK15439 autoinducer 2 ABC tra 100.0 4E-48 8.7E-53 383.1 24.3 217 60-283 265-491 (510)
305 TIGR03771 anch_rpt_ABC anchore 100.0 6.9E-48 1.5E-52 343.2 22.4 192 85-284 1-201 (223)
306 PRK13546 teichoic acids export 100.0 2.8E-47 6.1E-52 347.8 26.1 208 63-285 4-233 (264)
307 PRK10982 galactose/methyl gala 100.0 8.6E-48 1.9E-52 379.0 24.5 218 61-282 248-478 (491)
308 PRK13545 tagH teichoic acids e 100.0 2.8E-47 6E-52 371.9 27.1 210 60-284 18-232 (549)
309 COG4172 ABC-type uncharacteriz 100.0 7.9E-48 1.7E-52 358.3 21.8 236 60-295 3-259 (534)
310 COG4618 ArpD ABC-type protease 100.0 1.2E-47 2.6E-52 365.5 23.2 220 59-284 330-560 (580)
311 TIGR01187 potA spermidine/putr 100.0 1.5E-47 3.2E-52 359.3 23.1 196 95-293 1-200 (325)
312 PRK10938 putative molybdenum t 100.0 9.6E-48 2.1E-52 378.6 22.6 217 60-277 257-485 (490)
313 PRK15064 ABC transporter ATP-b 100.0 2.1E-47 4.5E-52 379.6 24.9 205 63-283 1-241 (530)
314 cd03223 ABCD_peroxisomal_ALDP 100.0 2.1E-47 4.6E-52 325.6 21.3 163 64-271 1-163 (166)
315 PRK15064 ABC transporter ATP-b 100.0 6.4E-47 1.4E-51 376.1 25.7 205 61-284 317-525 (530)
316 PRK10535 macrolide transporter 100.0 1.3E-46 2.8E-51 381.7 28.4 219 62-283 3-231 (648)
317 PRK11819 putative ABC transpor 100.0 4.3E-47 9.4E-52 379.3 24.5 205 61-282 4-248 (556)
318 PRK13541 cytochrome c biogenes 100.0 7.1E-47 1.5E-51 329.9 20.3 191 63-265 1-192 (195)
319 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.5E-46 3.3E-51 339.7 22.0 195 72-281 2-204 (246)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-46 4.3E-51 374.3 24.6 205 62-283 3-247 (552)
321 PLN03211 ABC transporter G-25; 100.0 7.9E-47 1.7E-51 383.0 22.0 211 66-283 71-295 (659)
322 PRK11819 putative ABC transpor 100.0 4.3E-46 9.4E-51 372.1 25.9 208 61-284 322-533 (556)
323 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.8E-46 1E-50 371.5 25.9 208 60-283 319-530 (552)
324 cd03236 ABC_RNaseL_inhibitor_d 100.0 2E-46 4.3E-51 340.6 19.3 204 67-277 4-220 (255)
325 PLN03232 ABC transporter C fam 100.0 5.9E-45 1.3E-49 396.8 30.2 203 62-284 613-828 (1495)
326 PRK13409 putative ATPase RIL; 100.0 2.7E-45 5.8E-50 367.7 24.4 199 60-278 337-536 (590)
327 COG5265 ATM1 ABC-type transpor 100.0 1E-45 2.3E-50 345.7 19.5 217 62-285 261-487 (497)
328 PLN03130 ABC transporter C fam 100.0 1.2E-44 2.6E-49 395.4 30.7 202 62-284 613-828 (1622)
329 COG4674 Uncharacterized ABC-ty 100.0 7.7E-46 1.7E-50 316.5 15.4 220 62-285 4-236 (249)
330 PRK11147 ABC transporter ATPas 100.0 8E-45 1.7E-49 368.0 25.5 207 60-282 316-526 (635)
331 PRK15177 Vi polysaccharide exp 100.0 4.6E-45 9.9E-50 323.2 20.2 189 78-283 1-191 (213)
332 TIGR00954 3a01203 Peroxysomal 100.0 2E-44 4.2E-49 366.3 27.6 192 62-270 450-653 (659)
333 COG4167 SapF ABC-type antimicr 100.0 4.1E-45 8.9E-50 309.5 18.5 234 62-295 3-251 (267)
334 PRK10636 putative ABC transpor 100.0 1.1E-44 2.3E-49 367.0 24.7 203 60-282 309-515 (638)
335 COG1119 ModF ABC-type molybden 100.0 3.5E-45 7.6E-50 322.8 17.7 218 59-278 27-256 (257)
336 PLN03073 ABC transporter F fam 100.0 2E-44 4.3E-49 367.9 24.9 205 61-282 506-712 (718)
337 TIGR00957 MRP_assoc_pro multi 100.0 1.4E-43 3.1E-48 386.4 31.6 203 63-284 636-850 (1522)
338 TIGR00955 3a01204 The Eye Pigm 100.0 1.8E-44 3.9E-49 364.3 21.8 202 76-282 37-254 (617)
339 PRK10636 putative ABC transpor 100.0 5.2E-44 1.1E-48 362.0 24.6 204 63-282 1-234 (638)
340 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 6.9E-44 1.5E-48 297.3 19.8 144 64-272 1-144 (144)
341 COG1101 PhnK ABC-type uncharac 100.0 2.8E-44 6.1E-49 311.0 17.8 216 63-279 1-233 (263)
342 TIGR00956 3a01205 Pleiotropic 100.0 5.6E-44 1.2E-48 386.4 23.7 214 62-281 758-990 (1394)
343 COG0396 sufC Cysteine desulfur 100.0 4E-43 8.6E-48 306.8 23.5 217 62-280 2-230 (251)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 1E-43 2.2E-48 305.9 19.4 166 67-292 4-171 (177)
345 KOG0054 Multidrug resistance-a 100.0 4.6E-43 9.9E-48 369.7 26.6 221 61-289 1136-1367(1381)
346 TIGR01271 CFTR_protein cystic 100.0 2E-42 4.4E-47 376.6 30.7 187 78-285 440-637 (1490)
347 COG4586 ABC-type uncharacteriz 100.0 5.1E-44 1.1E-48 318.8 14.4 205 78-284 38-246 (325)
348 COG4107 PhnK ABC-type phosphon 100.0 3.3E-43 7.1E-48 295.9 18.1 232 60-294 3-252 (258)
349 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.4E-42 3.1E-47 292.5 21.4 156 66-272 2-157 (157)
350 PRK11147 ABC transporter ATPas 100.0 1.3E-42 2.7E-47 352.0 25.0 202 62-282 2-241 (635)
351 PLN03140 ABC transporter G fam 100.0 1.7E-42 3.6E-47 374.8 25.2 213 63-280 867-1106(1470)
352 PRK13409 putative ATPase RIL; 100.0 5.3E-43 1.2E-47 351.1 16.2 192 69-271 79-287 (590)
353 COG1134 TagH ABC-type polysacc 100.0 9.8E-42 2.1E-46 301.1 19.0 195 77-284 40-236 (249)
354 TIGR00956 3a01205 Pleiotropic 100.0 5.4E-42 1.2E-46 371.0 20.4 204 77-282 74-298 (1394)
355 cd03238 ABC_UvrA The excision 100.0 2.3E-41 4.9E-46 291.2 19.2 157 77-273 8-166 (176)
356 COG4136 ABC-type uncharacteriz 100.0 9.1E-42 2E-46 280.9 14.7 200 63-268 2-207 (213)
357 PLN03073 ABC transporter F fam 100.0 2.2E-41 4.7E-46 345.5 19.9 217 61-282 175-429 (718)
358 PLN03140 ABC transporter G fam 100.0 1.5E-41 3.2E-46 367.4 18.7 203 77-283 178-426 (1470)
359 PTZ00243 ABC transporter; Prov 100.0 6.7E-40 1.5E-44 357.6 29.5 187 77-284 673-870 (1560)
360 KOG0054 Multidrug resistance-a 100.0 7.9E-40 1.7E-44 345.3 28.7 205 60-284 515-731 (1381)
361 COG0488 Uup ATPase components 100.0 3.7E-40 8E-45 324.8 21.4 203 62-282 2-238 (530)
362 KOG0061 Transporter, ABC super 100.0 8.9E-40 1.9E-44 328.8 19.9 215 63-282 25-258 (613)
363 KOG0059 Lipid exporter ABCA1 a 100.0 9.5E-40 2.1E-44 340.8 18.8 221 62-284 563-787 (885)
364 COG4133 CcmA ABC-type transpor 100.0 9E-40 2E-44 277.8 14.3 191 63-258 2-193 (209)
365 COG4778 PhnL ABC-type phosphon 100.0 1.5E-39 3.3E-44 272.6 13.0 207 63-270 4-227 (235)
366 cd03270 ABC_UvrA_I The excisio 100.0 2.2E-38 4.8E-43 282.9 18.9 195 75-277 6-226 (226)
367 COG0488 Uup ATPase components 100.0 1.3E-37 2.9E-42 306.7 22.7 204 59-282 317-523 (530)
368 PF00005 ABC_tran: ABC transpo 100.0 1.9E-37 4.1E-42 254.5 11.9 132 80-223 1-137 (137)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 2.6E-36 5.6E-41 264.3 14.1 164 81-270 14-190 (197)
370 cd03271 ABC_UvrA_II The excisi 100.0 2.5E-35 5.4E-40 268.0 17.5 196 78-279 9-261 (261)
371 COG4138 BtuD ABC-type cobalami 100.0 7.9E-37 1.7E-41 257.4 6.8 211 63-284 3-221 (248)
372 COG1129 MglA ABC-type sugar tr 100.0 7.9E-35 1.7E-39 281.8 21.3 217 60-282 260-488 (500)
373 COG4615 PvdE ABC-type sideroph 100.0 2.6E-34 5.7E-39 267.3 17.6 205 63-277 322-530 (546)
374 cd03279 ABC_sbcCD SbcCD and ot 100.0 7.7E-35 1.7E-39 257.6 13.5 192 63-272 5-210 (213)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 3E-34 6.6E-39 257.8 12.6 191 64-269 4-234 (243)
376 cd03273 ABC_SMC2_euk Eukaryoti 100.0 5.6E-34 1.2E-38 258.0 13.8 177 90-269 25-242 (251)
377 cd03274 ABC_SMC4_euk Eukaryoti 100.0 2.6E-34 5.6E-39 254.4 6.5 182 63-270 5-204 (212)
378 COG4170 SapD ABC-type antimicr 100.0 6.4E-33 1.4E-37 240.0 14.5 234 62-296 2-261 (330)
379 COG4178 ABC-type uncharacteriz 100.0 8.6E-32 1.9E-36 265.4 23.9 192 61-269 390-587 (604)
380 KOG0927 Predicted transporter 100.0 9.1E-33 2E-37 265.2 11.0 205 60-282 386-594 (614)
381 cd03240 ABC_Rad50 The catalyti 100.0 3.1E-32 6.7E-37 239.7 13.3 165 83-270 16-197 (204)
382 COG3845 ABC-type uncharacteriz 100.0 3.4E-31 7.3E-36 252.9 20.8 222 60-282 254-490 (501)
383 KOG0065 Pleiotropic drug resis 100.0 3.9E-32 8.5E-37 282.2 12.6 201 76-281 803-1018(1391)
384 PRK00349 uvrA excinuclease ABC 100.0 4.7E-31 1E-35 274.4 20.6 221 62-294 613-937 (943)
385 PRK00635 excinuclease ABC subu 100.0 9E-31 2E-35 283.0 23.1 213 62-284 599-906 (1809)
386 cd03275 ABC_SMC1_euk Eukaryoti 100.0 2.7E-30 5.9E-35 233.5 13.5 196 64-270 4-233 (247)
387 cd03276 ABC_SMC6_euk Eukaryoti 100.0 8.2E-30 1.8E-34 223.4 12.2 174 80-272 12-192 (198)
388 KOG0927 Predicted transporter 100.0 1E-29 2.2E-34 244.2 13.2 215 63-282 75-307 (614)
389 KOG0062 ATPase component of AB 100.0 2.7E-29 5.9E-34 240.2 15.9 198 59-275 358-559 (582)
390 TIGR00630 uvra excinuclease AB 100.0 7.1E-29 1.5E-33 257.8 20.3 108 173-282 807-923 (924)
391 COG1245 Predicted ATPase, RNas 100.0 5.9E-29 1.3E-33 235.1 16.0 188 63-269 342-530 (591)
392 KOG0060 Long-chain acyl-CoA tr 100.0 7.2E-28 1.6E-32 233.1 22.6 197 60-270 430-641 (659)
393 KOG0062 ATPase component of AB 100.0 1.6E-29 3.6E-34 241.7 9.7 202 62-282 79-283 (582)
394 KOG0066 eIF2-interacting prote 100.0 2.3E-28 5E-33 230.1 13.0 203 60-282 583-789 (807)
395 KOG2355 Predicted ABC-type tra 100.0 1.7E-27 3.7E-32 205.5 16.1 210 61-278 11-231 (291)
396 KOG0064 Peroxisomal long-chain 99.9 5E-26 1.1E-30 218.2 11.6 189 63-268 481-681 (728)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.9 7.4E-26 1.6E-30 200.5 11.3 174 80-272 14-211 (213)
398 cd03280 ABC_MutS2 MutS2 homolo 99.9 9.7E-26 2.1E-30 197.6 11.1 147 79-277 16-172 (200)
399 COG1245 Predicted ATPase, RNas 99.9 5.8E-26 1.3E-30 214.9 8.8 188 69-270 80-288 (591)
400 cd03241 ABC_RecN RecN ATPase i 99.9 1.5E-23 3.2E-28 192.6 15.5 77 194-273 170-250 (276)
401 cd03239 ABC_SMC_head The struc 99.9 1.9E-23 4E-28 180.2 14.7 74 195-270 95-172 (178)
402 COG2401 ABC-type ATPase fused 99.9 2.3E-23 4.9E-28 195.5 14.8 180 78-274 397-588 (593)
403 KOG0065 Pleiotropic drug resis 99.9 1.1E-23 2.5E-28 219.5 12.6 203 77-282 128-349 (1391)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.9 1.3E-23 2.9E-28 187.2 10.5 154 76-278 16-175 (222)
405 cd03283 ABC_MutS-like MutS-lik 99.9 1.3E-23 2.9E-28 184.2 9.1 145 77-267 14-162 (199)
406 cd03227 ABC_Class2 ABC-type Cl 99.9 5.1E-23 1.1E-27 174.7 11.4 138 82-270 13-155 (162)
407 PRK00635 excinuclease ABC subu 99.9 6.6E-22 1.4E-26 214.7 21.4 120 173-294 1678-1806(1809)
408 KOG0066 eIF2-interacting prote 99.9 1.2E-23 2.5E-28 198.5 4.1 212 63-279 264-494 (807)
409 COG0178 UvrA Excinuclease ATPa 99.9 3.3E-21 7.1E-26 193.0 17.4 120 174-295 802-930 (935)
410 cd03243 ABC_MutS_homologs The 99.9 1.4E-21 3E-26 171.5 10.0 154 82-281 21-176 (202)
411 PRK00349 uvrA excinuclease ABC 99.9 4.3E-21 9.3E-26 200.3 13.4 106 176-284 471-585 (943)
412 cd03242 ABC_RecF RecF is a rec 99.8 1.6E-20 3.5E-25 171.9 15.2 77 192-273 181-269 (270)
413 cd03282 ABC_MSH4_euk MutS4 hom 99.8 6.8E-21 1.5E-25 167.7 10.3 143 76-263 15-159 (204)
414 TIGR00630 uvra excinuclease AB 99.8 1.3E-20 2.8E-25 196.3 13.5 104 177-283 470-582 (924)
415 KOG0063 RNAse L inhibitor, ABC 99.8 7E-20 1.5E-24 172.6 12.9 184 71-270 343-532 (592)
416 TIGR02858 spore_III_AA stage I 99.8 1.3E-19 2.9E-24 165.7 10.6 142 91-282 112-267 (270)
417 cd03284 ABC_MutS1 MutS1 homolo 99.8 4.3E-19 9.4E-24 157.5 10.0 157 76-282 17-179 (216)
418 smart00534 MUTSac ATPase domai 99.7 3.8E-18 8.3E-23 147.8 5.9 84 188-273 55-139 (185)
419 cd00820 PEPCK_HprK Phosphoenol 99.7 6.7E-18 1.4E-22 133.3 6.1 77 77-161 2-78 (107)
420 PRK00064 recF recombination pr 99.7 4.1E-16 8.9E-21 148.5 18.2 77 193-273 272-359 (361)
421 PF02463 SMC_N: RecF/RecN/SMC 99.7 3.8E-17 8.1E-22 144.7 10.3 177 81-268 16-211 (220)
422 cd03281 ABC_MSH5_euk MutS5 hom 99.7 1.2E-16 2.6E-21 141.6 13.0 138 78-262 17-161 (213)
423 TIGR01069 mutS2 MutS2 family p 99.7 1.5E-16 3.3E-21 164.0 10.0 145 63-258 295-448 (771)
424 KOG0063 RNAse L inhibitor, ABC 99.6 1.3E-16 2.8E-21 150.7 5.8 173 88-270 98-288 (592)
425 PRK07721 fliI flagellum-specif 99.6 2.2E-15 4.8E-20 146.2 13.8 168 76-281 145-340 (438)
426 cd01128 rho_factor Transcripti 99.6 6.3E-16 1.4E-20 140.0 8.5 179 84-275 10-213 (249)
427 PTZ00132 GTP-binding nuclear p 99.6 9.1E-16 2E-20 135.3 8.2 145 92-242 11-205 (215)
428 cd03287 ABC_MSH3_euk MutS3 hom 99.6 7.2E-15 1.6E-19 131.0 11.3 139 77-259 18-158 (222)
429 PRK00409 recombination and DNA 99.6 3.6E-15 7.8E-20 154.2 10.2 147 84-275 320-469 (782)
430 TIGR00634 recN DNA repair prot 99.6 6.2E-15 1.3E-19 148.0 9.9 76 194-272 440-519 (563)
431 TIGR00618 sbcc exonuclease Sbc 99.6 8.7E-15 1.9E-19 156.4 10.9 84 187-271 943-1036(1042)
432 PHA02562 46 endonuclease subun 99.5 1.4E-14 2.9E-19 145.1 8.7 79 191-273 465-555 (562)
433 PRK08533 flagellar accessory p 99.5 9.6E-14 2.1E-18 124.4 12.6 159 64-269 8-184 (230)
434 PRK10869 recombination and rep 99.5 3.9E-14 8.4E-19 141.8 10.5 76 194-272 430-509 (553)
435 PRK13695 putative NTPase; Prov 99.5 6.1E-15 1.3E-19 126.2 3.2 82 189-276 73-156 (174)
436 PRK03918 chromosome segregatio 99.5 1.3E-13 2.8E-18 144.9 10.4 80 189-270 783-868 (880)
437 PRK06793 fliI flagellum-specif 99.5 1.9E-13 4.1E-18 132.1 10.3 169 63-278 130-305 (432)
438 TIGR00606 rad50 rad50. This fa 99.5 2E-13 4.3E-18 148.8 11.7 107 149-262 1153-1277(1311)
439 cd03286 ABC_MSH6_euk MutS6 hom 99.5 1.2E-13 2.7E-18 122.7 8.3 142 76-262 16-160 (218)
440 PRK01156 chromosome segregatio 99.5 3.1E-13 6.8E-18 142.5 11.3 79 190-269 797-883 (895)
441 cd01124 KaiC KaiC is a circadi 99.4 1.3E-13 2.7E-18 118.4 6.8 82 187-269 64-163 (187)
442 PRK10246 exonuclease subunit S 99.4 3.4E-13 7.4E-18 144.0 10.8 81 189-270 944-1032(1047)
443 PF13304 AAA_21: AAA domain; P 99.4 3.1E-13 6.7E-18 118.2 7.6 66 192-258 234-302 (303)
444 COG0178 UvrA Excinuclease ATPa 99.4 1.6E-12 3.4E-17 131.3 13.4 115 178-294 465-587 (935)
445 PRK13830 conjugal transfer pro 99.4 2.7E-12 6E-17 133.9 13.6 69 210-279 650-728 (818)
446 TIGR02168 SMC_prok_B chromosom 99.4 5.8E-13 1.3E-17 142.9 8.3 79 188-269 1083-1165(1179)
447 TIGR03238 dnd_assoc_3 dnd syst 99.4 3.1E-13 6.6E-18 131.0 4.1 67 78-147 20-87 (504)
448 TIGR02788 VirB11 P-type DNA tr 99.4 1.1E-12 2.4E-17 122.4 7.6 144 83-283 137-280 (308)
449 cd01120 RecA-like_NTPases RecA 99.3 4E-12 8.7E-17 105.4 9.2 130 92-258 1-140 (165)
450 COG3910 Predicted ATPase [Gene 99.3 9.2E-12 2E-16 106.8 10.3 83 190-274 125-207 (233)
451 TIGR02169 SMC_prok_A chromosom 99.3 8.1E-12 1.7E-16 134.3 9.0 79 189-270 1069-1151(1164)
452 PRK06067 flagellar accessory p 99.2 9.4E-11 2E-15 104.9 13.0 153 86-270 21-187 (234)
453 PRK02224 chromosome segregatio 99.2 2E-11 4.3E-16 128.6 9.6 79 191-271 778-869 (880)
454 smart00382 AAA ATPases associa 99.2 3E-09 6.5E-14 84.6 17.3 119 89-254 1-125 (148)
455 PRK06002 fliI flagellum-specif 99.2 7.9E-11 1.7E-15 114.3 8.3 87 61-148 137-230 (450)
456 TIGR02655 circ_KaiC circadian 99.1 6.3E-12 1.4E-16 124.2 -0.0 158 86-269 17-190 (484)
457 PRK06995 flhF flagellar biosyn 99.1 1.1E-10 2.4E-15 114.5 8.4 169 79-274 245-430 (484)
458 TIGR01026 fliI_yscN ATPase Fli 99.1 3.1E-10 6.7E-15 110.5 9.0 181 73-281 147-345 (440)
459 cd01131 PilT Pilus retraction 99.1 5.5E-10 1.2E-14 97.8 9.6 119 92-269 3-122 (198)
460 cd01125 repA Hexameric Replica 99.1 2.8E-10 6.1E-15 102.3 7.3 48 208-256 107-160 (239)
461 TIGR00611 recf recF protein. A 99.0 6.6E-10 1.4E-14 106.1 7.5 63 193-259 274-345 (365)
462 cd02023 UMPK Uridine monophosp 99.0 5.5E-10 1.2E-14 97.3 6.1 112 92-228 1-114 (198)
463 PRK07196 fliI flagellum-specif 99.0 3.9E-10 8.5E-15 109.3 5.3 86 76-162 142-237 (434)
464 PRK13891 conjugal transfer pro 99.0 1.3E-08 2.8E-13 107.0 16.4 69 205-274 680-751 (852)
465 TIGR03881 KaiC_arch_4 KaiC dom 99.0 1.7E-10 3.6E-15 102.8 1.7 58 86-147 16-77 (229)
466 cd01130 VirB11-like_ATPase Typ 99.0 7.3E-10 1.6E-14 96.0 5.2 82 79-163 14-98 (186)
467 PRK14079 recF recombination pr 98.9 3.7E-09 7.9E-14 100.5 7.9 77 193-277 262-347 (349)
468 COG0419 SbcC ATPase involved i 98.9 6.4E-09 1.4E-13 110.1 10.0 80 190-271 811-898 (908)
469 TIGR02680 conserved hypothetic 98.9 3.8E-09 8.2E-14 115.6 7.8 64 188-255 1241-1316(1353)
470 PRK06315 type III secretion sy 98.9 2.4E-09 5.1E-14 104.1 5.5 171 76-278 151-344 (442)
471 PRK09825 idnK D-gluconate kina 98.8 4.9E-09 1.1E-13 90.2 5.0 67 89-161 2-70 (176)
472 PLN03210 Resistant to P. syrin 98.8 2.6E-08 5.5E-13 108.0 11.5 147 82-269 199-349 (1153)
473 PRK05399 DNA mismatch repair p 98.8 4.1E-08 8.8E-13 103.2 12.1 138 77-264 595-738 (854)
474 PRK10078 ribose 1,5-bisphospho 98.8 6.4E-09 1.4E-13 89.9 5.0 55 90-147 2-56 (186)
475 PRK08149 ATP synthase SpaL; Va 98.8 8.9E-09 1.9E-13 99.7 6.2 73 75-148 137-216 (428)
476 cd01876 YihA_EngB The YihA (En 98.7 6.3E-08 1.4E-12 80.0 9.4 138 93-240 2-169 (170)
477 TIGR02903 spore_lon_C ATP-depe 98.7 5.8E-08 1.3E-12 98.7 10.4 111 88-239 173-291 (615)
478 TIGR00416 sms DNA repair prote 98.7 2.5E-08 5.4E-13 97.9 7.3 137 86-272 90-247 (454)
479 PRK13898 type IV secretion sys 98.7 5.6E-07 1.2E-11 94.3 17.6 52 208-260 638-690 (800)
480 PRK01889 GTPase RsgA; Reviewed 98.7 1.3E-08 2.8E-13 96.9 4.6 80 79-161 184-263 (356)
481 PRK00300 gmk guanylate kinase; 98.7 2.9E-08 6.3E-13 86.7 6.2 49 88-138 3-63 (205)
482 PRK00454 engB GTP-binding prot 98.7 2.2E-08 4.8E-13 86.2 5.0 67 173-243 126-195 (196)
483 TIGR00235 udk uridine kinase. 98.7 1.2E-08 2.6E-13 89.8 3.2 63 88-151 4-67 (207)
484 TIGR02524 dot_icm_DotB Dot/Icm 98.7 2E-08 4.3E-13 95.7 5.0 115 88-203 132-268 (358)
485 TIGR00152 dephospho-CoA kinase 98.7 5E-08 1.1E-12 84.4 7.0 132 92-272 1-134 (188)
486 TIGR01420 pilT_fam pilus retra 98.7 2.4E-07 5.2E-12 87.8 11.8 114 87-258 119-233 (343)
487 PRK07594 type III secretion sy 98.6 2.6E-08 5.7E-13 96.6 5.2 65 63-128 129-193 (433)
488 cd01121 Sms Sms (bacterial rad 98.6 8.7E-08 1.9E-12 91.7 8.0 137 86-272 78-235 (372)
489 cd01136 ATPase_flagellum-secre 98.6 6.3E-08 1.4E-12 90.9 6.4 58 69-127 49-106 (326)
490 PRK10416 signal recognition pa 98.6 5.4E-08 1.2E-12 91.4 5.3 73 88-160 112-191 (318)
491 TIGR02322 phosphon_PhnN phosph 98.6 1.5E-07 3.4E-12 80.4 7.7 62 90-152 1-78 (179)
492 PRK09862 putative ATP-dependen 98.6 4.6E-08 9.9E-13 96.8 4.9 63 66-129 187-249 (506)
493 TIGR00767 rho transcription te 98.6 1.1E-07 2.4E-12 91.2 7.2 54 63-116 130-194 (415)
494 cd01122 GP4d_helicase GP4d_hel 98.6 6.8E-07 1.5E-11 81.4 12.2 177 77-270 17-228 (271)
495 cd00009 AAA The AAA+ (ATPases 98.5 8E-07 1.7E-11 71.3 10.5 56 200-256 72-131 (151)
496 TIGR02546 III_secr_ATP type II 98.5 1.6E-07 3.5E-12 91.3 7.0 82 69-151 125-212 (422)
497 cd01123 Rad51_DMC1_radA Rad51_ 98.5 1.9E-07 4.2E-12 83.1 6.8 133 87-255 16-170 (235)
498 PTZ00035 Rad51 protein; Provis 98.5 5.7E-07 1.2E-11 85.1 10.1 135 86-255 114-268 (337)
499 PRK09270 nucleoside triphospha 98.5 9.8E-08 2.1E-12 85.3 4.6 55 88-146 31-89 (229)
500 PRK13873 conjugal transfer ATP 98.5 1.1E-06 2.4E-11 92.2 12.9 51 208-259 631-682 (811)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.4e-69 Score=464.37 Aligned_cols=233 Identities=40% Similarity=0.621 Sum_probs=209.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC-CHHHHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL-DVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~-~~~~~~~~i 140 (298)
++|+++||+|+|+ +..||+|||++|++||+++|+||||||||||||||+||..|++|+|+++|+++... +...+|+++
T Consensus 1 ~mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 4799999999994 67899999999999999999999999999999999999999999999999877432 456789999
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|+|||+++|||. ||.||+.+++. ..+.+ +.++++.++|+++||. +..+.||.+|||||||||||||||+.+|+++
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vm 158 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVM 158 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence 999999999996 99999999863 23332 3356688999999997 5799999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 295 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 295 (298)
|+|||||+|||+...++++.+++++++ |.|.|+|||+|.++.+.||||++|++|+|++.|+|+++.. +.++-.+.|+.
T Consensus 159 LFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~~FL~ 237 (240)
T COG1126 159 LFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQFLS 237 (240)
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHHHHHH
Confidence 999999999999999999999999876 9999999999999999999999999999999999999864 45666777766
Q ss_pred hc
Q 022337 296 LS 297 (298)
Q Consensus 296 ~~ 297 (298)
..
T Consensus 238 ~i 239 (240)
T COG1126 238 KI 239 (240)
T ss_pred hh
Confidence 43
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-66 Score=465.82 Aligned_cols=233 Identities=41% Similarity=0.628 Sum_probs=213.1
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---H
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---S 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~ 135 (298)
||++++|+|.|... ..+|+||||+|++||++||||+||||||||+||+++|.+|++|+|.++|+++..++.. .
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 68999999999752 3699999999999999999999999999999999999999999999999999877644 5
Q ss_pred HhcceEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 136 LRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
.|++||++||+++|+. .||++|++|++...+.+. .++++.++++.+||+ +..++||.+|||||||||+|||||+.+
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcC
Confidence 5789999999999997 699999999998777532 346799999999997 689999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh-ccCChHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMAL 291 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~-~~~~~~~~ 291 (298)
|+|||+|||||+|||.+.+.++++|+++.++.|.||++|||.|+.++++||||.||++|++++.|+..++. .+++...+
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~ 239 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQ 239 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998874 55677777
Q ss_pred HHhhh
Q 022337 292 RFLQL 296 (298)
Q Consensus 292 ~~~~~ 296 (298)
.|...
T Consensus 240 ~fi~~ 244 (339)
T COG1135 240 EFIGE 244 (339)
T ss_pred HHHHh
Confidence 77653
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-66 Score=454.39 Aligned_cols=233 Identities=38% Similarity=0.624 Sum_probs=216.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++||+|+|. ++.+++|+||+|++||+++++|||||||||+||+|++|++|++|+|+++|+++.+++..++|++|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 689999999995 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|-|...|||. ||.|||++-+.+.+++. .++++.++++++||++ ++.+++|++|||||+|||.+||||+.+|++||+
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 9999999995 99999999887766543 3577999999999975 589999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQL 296 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~~~ 296 (298)
||||++|||.++..+.+.++++.++.|+|||+||||++++.+++|||.+|++|+++..++|+++.. +.++..+.|.+.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~f~g~ 238 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVEDFFGE 238 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999854 455666666554
No 4
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.5e-62 Score=431.27 Aligned_cols=234 Identities=38% Similarity=0.628 Sum_probs=213.0
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHh
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLR 137 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~ 137 (298)
++.|++++|+++| +++.|++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++...+.. ++|
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5689999999999 577899999999999999999999999999999999999999999999999999887753 458
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCccccCC-Cc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLRGK-KL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+++|++||...||.. ||+||+.|+++-+.. +. .++.+..-++.+||.....+.+|++|||||++|++||||++.+|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 899999999999975 999999998754332 22 13446667899999865589999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHHH
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRF 293 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~~ 293 (298)
+++++||||+||||.+...+-++|+++.+..|.|+++||||++.+..+|||++++.+|+|+..|+++++.+..+++.++|
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf 244 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQF 244 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988788888887
Q ss_pred hh
Q 022337 294 LQ 295 (298)
Q Consensus 294 ~~ 295 (298)
+.
T Consensus 245 ~~ 246 (263)
T COG1127 245 FN 246 (263)
T ss_pred hc
Confidence 54
No 5
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.7e-62 Score=441.41 Aligned_cols=220 Identities=40% Similarity=0.593 Sum_probs=203.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++||++.|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|.+|+|+++|+++.+++.+++.++++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 689999999995 7789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC-CcccHHHHhHhCcccc----C-C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPAL-FEGTVVDNIRYGPQLR----G-K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l-~~~tv~eni~~~~~~~----~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
|||.+.. ++.||+|-+.+|...+ . . ..+.+.+.++++.+|+. ++.++...+|||||||||.|||||+++|++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~i 159 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPI 159 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence 9999864 4569999999985432 1 1 12344688999999996 699999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||++||..++.+++++++++++++|+|||+|+||++.+.+|||++++|++|++++.|+|+++..
T Consensus 160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 999999999999999999999999998889999999999999999999999999999999999988754
No 6
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-62 Score=455.51 Aligned_cols=231 Identities=36% Similarity=0.604 Sum_probs=210.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.+.++++||+|.|+ +..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++...++ .+|.|
T Consensus 3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp--~kR~i 79 (352)
T COG3842 3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP--EKRPI 79 (352)
T ss_pred CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh--hhccc
Confidence 35799999999995 7789999999999999999999999999999999999999999999999999998775 46899
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCc---cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKL---TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|+|||+..|||. ||+|||+||++..+... .++++.++++.++++ ++.+++|++|||||||||||||||+.+|++|
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 999999999995 99999999987443222 245899999999997 5899999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 295 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 295 (298)
|||||.|+||.+.+.++...++++.++.|.|.|+||||.+++..++|||++|++|+|...|+|+++... .+.....|.+
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG 238 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIG 238 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999998653 3445555544
No 7
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-61 Score=425.01 Aligned_cols=236 Identities=36% Similarity=0.552 Sum_probs=213.2
Q ss_pred CeEEEEeEEEEeCCCC---cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHHh
Q 022337 62 PKFRVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-VLSLR 137 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~---~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-~~~~~ 137 (298)
++++++|+++.|+++. ++|++|||+|.+||++||+||||||||||.++|+|+.+|++|+|.++|+++.... ...++
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999996544 4999999999999999999999999999999999999999999999998775542 23567
Q ss_pred cceEEEeCCCC--CCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPA--LFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~--l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+.|.+|||||. +=|. ||.+-|.-++...+.+..++++.++++.+|+++.+++++|++|||||+|||||||||+.+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 88999999995 4454 99999998877666655667799999999999899999999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHH
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF 293 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~ 293 (298)
+||||||||+||+..+.+++++|.+++++.+.|.||||||+..+..+||||+||++|++++.++..++... .|++.+.+
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~L 241 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTREL 241 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987654 67788877
Q ss_pred hhhc
Q 022337 294 LQLS 297 (298)
Q Consensus 294 ~~~~ 297 (298)
++.+
T Consensus 242 l~a~ 245 (252)
T COG1124 242 LEAV 245 (252)
T ss_pred HHhh
Confidence 7654
No 8
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-61 Score=424.92 Aligned_cols=222 Identities=36% Similarity=0.547 Sum_probs=203.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSLRR 138 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~~~ 138 (298)
.+|+++||++.|++++++|+||||+|++||+++||||||||||||||+|+|+.+|++|+|.++|.++..++. .++|+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 579999999999878899999999999999999999999999999999999999999999999999877663 45678
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCcccc--------CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++||+||+++|.+. ||.+|+..|...+ +. ..++..+.++|+++|+. +...++..+|||||+|||+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaIAR 160 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAIAR 160 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHHHH
Confidence 99999999999985 9999999874321 11 12345688999999997 5788899999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+++|+++|.|||+|+|||.+.+.+|+.|++++++.|.|+|+..|+++.+.+|||||+-|++|+|+.+|+++++.+
T Consensus 161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988654
No 9
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.8e-61 Score=423.78 Aligned_cols=211 Identities=39% Similarity=0.611 Sum_probs=187.7
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
+++++||++.|..+ ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|+++|+++..++.. .+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 46899999999644 2699999999999999999999999999999999999999999999999999887643 33
Q ss_pred -hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 -RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 -~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+++||||||+++|++. ||.|||.+++.+.+... ..+++.++++.+|+.+...+++|.+|||||||||||||||+++
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 4679999999999985 99999998765554432 3566888999999975444488999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
|+++|+||||++||.++.+.++++|.+++++.|+|+||||||...+ .+|||++.|++|++.
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i~l~dG~~~ 221 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKIE 221 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEEEEeCCeee
Confidence 9999999999999999999999999999888899999999999877 589999999999953
No 10
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-61 Score=446.24 Aligned_cols=230 Identities=37% Similarity=0.574 Sum_probs=209.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++||+|.|++. .+++++||+|++||+++|+||||||||||||+|+||.+|++|+|+|+|++++++++. +|.|+
T Consensus 2 ~~i~l~~v~K~yg~~-~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~--~R~ia 78 (338)
T COG3839 2 AELELKNVRKSFGSF-EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE--KRGIA 78 (338)
T ss_pred cEEEEeeeEEEcCCc-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--HCCEE
Confidence 469999999999532 399999999999999999999999999999999999999999999999999998765 58899
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+|||++.|||. ||+||++|+++..+.+ ..++++.++++.++++ ++++++|.+|||||||||||||||+++|+++||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 99999999995 9999999998876543 3457899999999996 699999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 295 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 295 (298)
|||+|+||+..+..+...|+++.++.|.|+|+||||..++..++|||.+|++|+|.+.|+|.++.+ +.+.....|.+
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG 235 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIG 235 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhhcC
Confidence 999999999999999999999998889999999999999999999999999999999999999864 33444444443
No 11
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-61 Score=425.04 Aligned_cols=208 Identities=39% Similarity=0.629 Sum_probs=189.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++++++.|+ +..+|+|+||+|.+||+++|+||||||||||||+|+||.+|++|+|.++|+++... ...++
T Consensus 2 ~~l~i~~v~~~f~-~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 2 ALLEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred ceEEEEeeEEEeC-ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4689999999995 57899999999999999999999999999999999999999999999999988432 35799
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||||++.|||. ||+||+.+++...+.. +..+++.++++.+||. .+.+++|++|||||||||+|||||+.+|++|||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLl 154 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLL 154 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999985 9999999998765432 2345789999999997 589999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEe
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEV 276 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~ 276 (298)
||||++||..++..+.+.|.++.++.++||++||||++++..++|||++|.+ |+|...
T Consensus 155 DEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~ 214 (248)
T COG1116 155 DEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEE 214 (248)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeE
Confidence 9999999999999999999999888899999999999999999999999999 555443
No 12
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-60 Score=422.49 Aligned_cols=217 Identities=32% Similarity=0.513 Sum_probs=194.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++|+++|++++|+++ +||+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++.... -+.+|
T Consensus 2 ~~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~---~~~~I 77 (254)
T COG1121 2 MPMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR---KRLRI 77 (254)
T ss_pred CcEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc---cCCeE
Confidence 3579999999999644 7999999999999999999999999999999999999999999999998875432 14689
Q ss_pred EEEeCCCCC---CcccHHHHhHhCccccC-----C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 141 GMLFQIPAL---FEGTVVDNIRYGPQLRG-----K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 141 g~v~Q~~~l---~~~tv~eni~~~~~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|||||...+ ||.||+|.+.++...+. . ..+++++.++|+.+|+. ++.++.+++|||||+|||.|||||++
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~ 156 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQ 156 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhcc
Confidence 999997643 68899999999854221 1 22457799999999997 69999999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|++|+|||||+|+|+.++..++++|++++++ |+||+|||||++.+.++||+|+.| +++++..|+++++.+
T Consensus 157 ~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 99999999999999999999999999999887 999999999999999999999999 568889999998765
No 13
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=421.11 Aligned_cols=222 Identities=40% Similarity=0.601 Sum_probs=205.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC-CCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-DLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~-~~~~~~~~~~i 140 (298)
++++++|++++|+++..+|+++||+|++||+++|+||||||||||+++++|+++|++|.|.++|.++. ..+..++|+++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 47999999999976668999999999999999999999999999999999999999999999999987 35667889999
Q ss_pred EEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|||||+| ++|..||.|.++|++...+.+. .++++.++++.+++. +++++.|++|||||||||+||.+|+.+|++|
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 9999999 5777899999999988766543 346789999999997 5799999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+||+.+++++++.++++.++.|+|+|++|||++.+..+|||+++|++|+++.+|+|.++..
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999999999999999988768999999999999999999999999999999999988765
No 14
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.2e-60 Score=401.36 Aligned_cols=214 Identities=33% Similarity=0.523 Sum_probs=197.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~~~ 139 (298)
||+++||+|.|+++.++|+|+||+|++||++-|+||||||||||+|+|++..+|++|+|+++|.++..+... -+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 689999999999887799999999999999999999999999999999999999999999999999876543 46999
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
||+||||..|.+. ||+||++|++...+... .++++.++|+.+||. +..+..|.+|||||||||+||||++++|++|
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 9999999998875 99999999988777643 356799999999997 5788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
|.||||.+|||....++++++.++.. .|.||+|.|||.+.+.++--|++.+++|+++.+..
T Consensus 160 lADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred eecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999976 49999999999999999999999999999987643
No 15
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-60 Score=406.99 Aligned_cols=230 Identities=45% Similarity=0.661 Sum_probs=205.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc-----cEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-----GTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~-----G~I~i~g~~i~~~--~~ 133 (298)
.+.++++||+++| +.+.+|+|||++|++++++|+|||||||||||||+++++.+... |+|.++|+++.+. +.
T Consensus 5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 4569999999999 47789999999999999999999999999999999999998765 9999999999764 57
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.++|++||+|||.|+.||+|++||++||++.++... -++.++..|+...|.+ +.+++.+..||||||||++||||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa 163 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA 163 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence 789999999999999999999999999998877543 2355788888888753 35667889999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~ 287 (298)
|+.+|+|||||||||+|||.+...+-+++.++++ .-|||+|||+|..+.+++|+..++..|+++|.|+.+++.. +.+
T Consensus 164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~ 241 (253)
T COG1117 164 LAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKH 241 (253)
T ss_pred HhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccH
Confidence 9999999999999999999999999999999975 6899999999999999999999999999999999988754 444
Q ss_pred hHHHHH
Q 022337 288 PMALRF 293 (298)
Q Consensus 288 ~~~~~~ 293 (298)
...+.|
T Consensus 242 ~~TedY 247 (253)
T COG1117 242 KRTEDY 247 (253)
T ss_pred HHHHHH
Confidence 445444
No 16
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7.7e-59 Score=437.75 Aligned_cols=231 Identities=38% Similarity=0.612 Sum_probs=203.6
Q ss_pred eEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
||+++|++++|++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999953 13699999999999999999999999999999999999999999999999999876543 34
Q ss_pred hcceEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
|++|||+||++.+++ .||+||+.++....+.. ..++++.++++.+|+. ++.++++.+|||||||||+|||||+.+|
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 778999999999997 59999999876443322 2345688999999997 5789999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHH
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALR 292 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~ 292 (298)
++|||||||++||+.++..++++|++++++.|.|||+|||+++.+.++||+|++|++|++++.|+++++.. +.+...+.
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~~ 239 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQK 239 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHHH
Confidence 99999999999999999999999999987668999999999999999999999999999999999988753 33444444
Q ss_pred Hh
Q 022337 293 FL 294 (298)
Q Consensus 293 ~~ 294 (298)
|.
T Consensus 240 ~~ 241 (343)
T TIGR02314 240 FI 241 (343)
T ss_pred HH
Confidence 43
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-59 Score=421.02 Aligned_cols=218 Identities=39% Similarity=0.610 Sum_probs=199.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE---eCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR---DITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~---~i~~~~~~~~~~~ 139 (298)
+|+++|+++.| +...+++|||++|+.||.+|++||||||||||||+|+||..|++|.|.++|+ |....+ ...++
T Consensus 2 ~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred ceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 58999999999 4678999999999999999999999999999999999999999999999999 554432 33578
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCC----CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGK----KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
||||||++.+|+ +||.|||+||+..+.. ...+.++.++|+.++|+ .+.++||.+||||||||||+||||+.+|+
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 999999999998 5999999999865422 12356789999999997 68999999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+||||||+++||..-+.++...|+++.++.|.|.++||||.+++.++||||++|++|+|...|+++++.+
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999999999988889999999999999999999999999999999999999854
No 18
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-57 Score=432.23 Aligned_cols=229 Identities=30% Similarity=0.526 Sum_probs=203.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|++++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.. +++|||
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 699999999994356799999999999999999999999999999999999999999999999999776543 478999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
|||++.+|+. ||+||+.|+....+.. ...+++.++++.++++ ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999985 9999999986543322 1235688999999996 6899999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||++||+.+++.+.+.|+++.++.|.|+|+||||++++..+||++++|++|++++.|+++++.+. .+.+...|.
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~ 235 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFI 235 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHHHHHc
Confidence 999999999999999999999876699999999999999999999999999999999999988543 334444443
No 19
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-57 Score=408.36 Aligned_cols=225 Identities=42% Similarity=0.657 Sum_probs=196.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSLRRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~~~~i 140 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+++.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999995 5679999999999999999999999999999999999999999999999999876543 3567789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++.+|+. |+.||+.++.... ... ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 158 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARALALDPELL 158 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998885 9999998864321 111 1234578899999996 5678999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
||||||+|||+.+++.+++.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++....+++.
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 232 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDDPLV 232 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCCChhh
Confidence 99999999999999999999999876458999999999999999999999999999999999888765434443
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-57 Score=428.46 Aligned_cols=231 Identities=31% Similarity=0.538 Sum_probs=205.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .++++
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 45899999999995 5679999999999999999999999999999999999999999999999999976553 35789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|||||++.+|+. ||+||+.|+...++.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999985 9999999986543322 2246788999999996 58899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHhh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 295 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 295 (298)
|||||++||+..+.++.+.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.+
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g 238 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMG 238 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHHHHhcC
Confidence 99999999999999999999999876689999999999999999999999999999999999987543 3344444443
No 21
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.1e-57 Score=427.31 Aligned_cols=229 Identities=38% Similarity=0.583 Sum_probs=204.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++.+|
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~--~~r~ig 79 (353)
T TIGR03265 3 PYLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP--QKRDYG 79 (353)
T ss_pred cEEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 5799999999995 5679999999999999999999999999999999999999999999999999976554 367899
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|+||++.+|+ .||+||+.|+...++.. ...+++.++++.++|+ ++.++++.+|||||||||+|||||+.+|++|||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999998 49999999986543322 2245789999999997 589999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||||++||+..++.+.+.|+++.++.|.|+|+||||++++..+|||+++|++|++++.|+++++.+. .+.....|.
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~ 235 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFV 235 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhc
Confidence 9999999999999999999999876799999999999999999999999999999999999988643 334444443
No 22
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.4e-57 Score=419.68 Aligned_cols=220 Identities=35% Similarity=0.591 Sum_probs=200.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++||+++|++++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++... ..+.++++|
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 3588999999995357899999999999999999999999999999999999999999999999998653 457788999
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|+||++.+++. |++||+.|...+++.. ..++++.++++.++|.+ ..++++.+||+|||||++||+||+++|++|||
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999885 9999999987766643 34567999999999974 55788999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||||+||||.++.++++.|++++++.|+||+++||.++++..+||||++|++|++++.|+++++.
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999998874489999999999999999999999999999999988764
No 23
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.8e-57 Score=418.15 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=197.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++||+|+|+ +..+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++...+ ...++++
T Consensus 5 ~~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 5 VAPIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred CceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 45899999999995 568999999999999999999999999999999999999999999999999986543 3567889
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||+||++.+|+ .|++||+.+....++... ..+++.++++.+++. +..++++.+||||||||++|||||+++|++||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999987 599999987544433321 234677899999996 57889999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.+++.+++.|++++++ |+|||++||+++++..+||||++|++|++++.|+++++..
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999754 9999999999999999999999999999999999988743
No 24
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.9e-56 Score=426.01 Aligned_cols=231 Identities=33% Similarity=0.568 Sum_probs=204.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++|+++|++++|+ +..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++.
T Consensus 11 ~~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ 87 (375)
T PRK09452 11 LSPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA--ENRH 87 (375)
T ss_pred CCceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 456799999999995 5679999999999999999999999999999999999999999999999999976654 3578
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+|+. ||+||+.|+...++... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999985 99999999865433322 235688899999997 6899999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||||||++||+..++.+.+.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~~a~~~ 245 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFI 245 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhc
Confidence 999999999999999999999999876799999999999999999999999999999999999987543 334444443
No 25
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.8e-56 Score=452.94 Aligned_cols=249 Identities=34% Similarity=0.541 Sum_probs=211.3
Q ss_pred hhHHHHHHhhhccCCCCCcccc--ccCCCCCeEEEEeEEEEeCCCC-cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHH
Q 022337 34 SLFRDEVREHLLTVPGEAEAED--DNQIQKPKFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL 110 (298)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~y~~~~-~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l 110 (298)
....+++.+.+...++...... ..+.....++++|++|+|+.+. ++|+|+||+|++||++||+|+||||||||+|+|
T Consensus 440 ~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL 519 (709)
T COG2274 440 KVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLL 519 (709)
T ss_pred HHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHH
Confidence 3344556665554333222111 1122344699999999997653 599999999999999999999999999999999
Q ss_pred hcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchh---
Q 022337 111 NRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF--- 187 (298)
Q Consensus 111 ~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--- 187 (298)
+|+++|++|+|++||.|+...+...+|++||||+|++.+|.+|++||+.++.. ..+.+++.++++..|+++..
T Consensus 520 ~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p----~~~~e~i~~A~~~ag~~~fI~~l 595 (709)
T COG2274 520 LGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNP----EATDEEIIEAAQLAGAHEFIENL 595 (709)
T ss_pred hcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998742 23467888898888886432
Q ss_pred -------hcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh
Q 022337 188 -------LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260 (298)
Q Consensus 188 -------~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~ 260 (298)
..+.+..||||||||++|||||+++|+|||||||||+||+.+++.+++.|.++.+ |+|+|+|||+++.+.
T Consensus 596 P~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti~- 672 (709)
T COG2274 596 PMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTIR- 672 (709)
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHhh-
Confidence 2456789999999999999999999999999999999999999999999999964 899999999999985
Q ss_pred hcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 261 IADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 261 ~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
.||||+||++|+|+++|+++++.+....+
T Consensus 673 ~adrIiVl~~Gkiv~~gs~~ell~~~g~y 701 (709)
T COG2274 673 SADRIIVLDQGKIVEQGSHEELLAQGGLY 701 (709)
T ss_pred hccEEEEccCCceeccCCHHHHHHhcChH
Confidence 69999999999999999999997753333
No 26
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-56 Score=442.22 Aligned_cols=247 Identities=32% Similarity=0.526 Sum_probs=210.9
Q ss_pred HHHHhhhccCCCCCccccccC-CCCCeEEEEeEEEEeCCCC--cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 38 DEVREHLLTVPGEAEAEDDNQ-IQKPKFRVRELRKESDDGA--PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~l~~~y~~~~--~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++.++..|.........+ .....|+++||+|.|+.+. ++|+|+||+|+|||++|||||||+||||+.++|..+|
T Consensus 439 ~rvFel~dr~P~i~~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 439 ERVFELMDRKPRIPLTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred HHHHHHhccCCCCCCCCccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345555554444222211111 2345699999999998553 6999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc---------
Q 022337 115 EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS--------- 185 (298)
Q Consensus 115 ~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~--------- 185 (298)
+|++|+|.+||+||++++...+|++||+|.|+|.||..||+|||.||.. ..+++++..+.++.+.++
T Consensus 519 ~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~----~~t~e~i~~AAk~ANah~FI~~~p~gY 594 (716)
T KOG0058|consen 519 DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD----NATDEEIEAAAKMANAHEFITNFPDGY 594 (716)
T ss_pred CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCcccc
Confidence 9999999999999999999999999999999999999999999999975 345677888888777642
Q ss_pred -hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 186 -SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 186 -~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
...++++.+||||||||+||||||++||.||||||.||+||.+++..+.+.|.+..+ ++|||+|.|+++.+++ ||+
T Consensus 595 ~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~ 671 (716)
T KOG0058|consen 595 NTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQ 671 (716)
T ss_pred ccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccE
Confidence 234567889999999999999999999999999999999999999999999999876 6999999999999975 999
Q ss_pred EEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 265 VCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 265 v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
|+|+++|++++.|+.+++......++.
T Consensus 672 Ivvi~~G~V~E~G~h~eLl~~~~gly~ 698 (716)
T KOG0058|consen 672 IVVIDKGRVVEMGTHDELLSKPNGLYA 698 (716)
T ss_pred EEEEcCCeEEecccHHHHhhCcccHHH
Confidence 999999999999999999775433333
No 27
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.7e-56 Score=419.15 Aligned_cols=235 Identities=27% Similarity=0.423 Sum_probs=204.5
Q ss_pred CCeEEEEeEEEEeCC------------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 61 KPKFRVRELRKESDD------------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~------------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
+++|+++||+++|+. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 468999999999952 13699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHH---HHhcceEEEeCCC--CCCc-ccHHHHhHhCcccc--CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChh
Q 022337 129 TDLDVL---SLRRKVGMLFQIP--ALFE-GTVVDNIRYGPQLR--GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVG 198 (298)
Q Consensus 129 ~~~~~~---~~~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 198 (298)
...+.. .++++++||||++ .+++ .|+.||+.++...+ ... ...+++.++++.+++.++..++++++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 776543 3567899999998 4776 59999998764322 111 123557889999999645789999999999
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 199 qkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
|||||+|||||+.+|++||+||||++||+.++.+++++|+++.++.|.|+|+||||++.+..+||||++|++|+|++.|+
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~ 245 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGT 245 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999977668999999999999999999999999999999999
Q ss_pred hhhhhc-cCChHHHHHhh
Q 022337 279 PDLLSE-AKHPMALRFLQ 295 (298)
Q Consensus 279 ~~~~~~-~~~~~~~~~~~ 295 (298)
++++.. +.|++.+.+..
T Consensus 246 ~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 246 YDEVYHNPLHPYTKALMS 263 (331)
T ss_pred HHHHHcCCCCHHHHHHHh
Confidence 988754 45677766553
No 28
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.7e-56 Score=421.49 Aligned_cols=228 Identities=35% Similarity=0.569 Sum_probs=201.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .++++||
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 589999999995 5679999999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcccc----CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLR----GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||++.+|+. ||+||+.|+.... +.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999985 9999999986431 111 1245788999999996 588999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||||++||+.+++.+.+.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.+...|.
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~ 237 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFM 237 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 9999999999999999999999999876689999999999999999999999999999999999988543 334444443
No 29
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-57 Score=408.20 Aligned_cols=232 Identities=37% Similarity=0.619 Sum_probs=209.4
Q ss_pred eEEEEeEEEEeCCC-----------------------CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc
Q 022337 63 KFRVRELRKESDDG-----------------------APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG 119 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-----------------------~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G 119 (298)
.++++|++|-|+.+ ..-++|+||+|++||++.|+|-||||||||+|++++|++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 58888998888421 1147899999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHH----hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCC
Q 022337 120 TVFLDGRDITDLDVLSL----RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTG 192 (298)
Q Consensus 120 ~I~i~g~~i~~~~~~~~----~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~ 192 (298)
+|+++|+++..++..++ |+++++|||++.|+|. ||.||+.||++..+.+. .++++.++++.+||+ .+.+++|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE-GYADKYP 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch-hhhhcCc
Confidence 99999999998886544 3579999999999986 99999999998887653 346789999999997 5899999
Q ss_pred CCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 193 GEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
++|||||||||.|||||+.+|+|||+|||||+|||--+.++.+.|.++.++.++||||||||++++.++.|||.+|++|+
T Consensus 163 ~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ 242 (386)
T COG4175 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGE 242 (386)
T ss_pred ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCe
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEEeeChhhhh-ccCChHHHHHhh
Q 022337 273 IVEVLKPDLLS-EAKHPMALRFLQ 295 (298)
Q Consensus 273 i~~~g~~~~~~-~~~~~~~~~~~~ 295 (298)
|+..|+|+++. .+.+.|...|.+
T Consensus 243 ivQ~Gtp~eIl~~PAndYV~~Fv~ 266 (386)
T COG4175 243 IVQVGTPEEILLNPANDYVRDFVR 266 (386)
T ss_pred EEEeCCHHHHHcCccHHHHHHHHh
Confidence 99999999985 445667777653
No 30
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.2e-56 Score=422.09 Aligned_cols=218 Identities=32% Similarity=0.493 Sum_probs=198.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc--cEEEECCEeCCCCCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS--GTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~--G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++|++++|+ +..+|+|+||+|++||+++|+|||||||||||++|+|+++|++ |+|.++|+++...+. .++.+
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~i 81 (362)
T TIGR03258 5 GIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGL 81 (362)
T ss_pred EEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCE
Confidence 489999999995 5679999999999999999999999999999999999999999 999999999876553 35789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||+||++.+|+. ||+||+.|+...++.. ...+++.++++.++|. ++.++++.+|||||||||+|||||+.+|++||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999985 9999999986543322 1235688999999997 58899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcC-CcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKH-GMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~-g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||++||+..+.++.+.|+++.++. |.|+|+||||++++..+||||++|++|+++..|+++++..
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999998765 7999999999999999999999999999999999998854
No 31
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-56 Score=418.43 Aligned_cols=221 Identities=38% Similarity=0.600 Sum_probs=197.5
Q ss_pred eEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
||+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++.. .+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999952 35799999999999999999999999999999999999999999999999999776543 34
Q ss_pred hcceEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
++++||+||++.+|+ .|++||+.++....+... ..+++.++++.+|+. +..++++.+|||||||||+|||||+.+|
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 678999999999887 599999998754333221 235678899999996 5789999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||+|||+.++..+++.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999976668999999999999999999999999999999999988754
No 32
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=7.3e-56 Score=417.52 Aligned_cols=221 Identities=28% Similarity=0.450 Sum_probs=197.0
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++||+++|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+ ...++.
T Consensus 38 ~~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ 115 (340)
T PRK13536 38 STVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARAR 115 (340)
T ss_pred CceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhcc
Confidence 355799999999995 567999999999999999999999999999999999999999999999999986543 456788
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+++ .|+.||+.+....++... ..+++.++++.+++. +..++++.+||||||||++|||||+++|++|
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999886 599999986433333221 234577889999997 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+||||.+++.+++.|++++++ |+|||++||+++++.++||||++|++|+++..|+++++..
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999764 9999999999999999999999999999999999988743
No 33
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-57 Score=388.37 Aligned_cols=219 Identities=33% Similarity=0.538 Sum_probs=200.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|+++.+++|+|+.-.++++|+||++++||++||+|||||||||+||+|++++.|++|.|++||.|..+. +...|++||.
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGV 79 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGV 79 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcce
Confidence 689999999996544599999999999999999999999999999999999999999999999998764 4568999999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|.+..+|. .|++|||.|...+++... .++++.++.+.+++. +.+++++.+||.||||||+|||||+++|++++||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD 158 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD 158 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence 997777886 599999998876665533 367789999999996 6899999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||..+++.+.+.+++++++ |++||++||+|++++.+||||+++++|+++..|+++.+..
T Consensus 159 EP~sGLDi~~~r~~~dfi~q~k~e-gr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 159 EPTSGLDIRTRRKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CCCCCccHHHHHHHHHHHHHhhcC-CcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 999999999999999999998654 9999999999999999999999999999999999988744
No 34
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-55 Score=397.12 Aligned_cols=229 Identities=45% Similarity=0.749 Sum_probs=202.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 589999999995 5679999999999999999999999999999999999999999999999999876665566788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+||++.+|+.|++||+.++....+ ...+++.++++.++++.++.++++.+||||||||++|||||+.+|++|||||||
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKG--EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcC--cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999888899999987643222 224567889999999634678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHh
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~ 294 (298)
++||+.+++.+.+.|++++++.|.|||++|||++.+..+||++++|++|++++.++++++.. +.+.+...|.
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
T PRK14250 160 SALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFI 232 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 99999999999999999876558999999999999999999999999999999999988754 2344555554
No 35
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-55 Score=420.92 Aligned_cols=221 Identities=35% Similarity=0.573 Sum_probs=200.3
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...+. .++.
T Consensus 16 ~~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 16 LTPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred CCceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 356799999999995 5679999999999999999999999999999999999999999999999999876553 4678
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+|+. ||.||+.|+....+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lL 171 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLL 171 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999985 9999999986533322 2245688999999996 5889999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||++||+..++.+.+.|+++.++.|.|+|+||||++++..+|||+++|++|++++.|+++++..
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 99999999999999999999999877679999999999999999999999999999999999998754
No 36
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.7e-57 Score=397.88 Aligned_cols=232 Identities=33% Similarity=0.634 Sum_probs=206.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ 139 (298)
.+++++++++++| ++-.+++|+||++++||+++||||||||||||+++|+|+++|++|+|.++|++|..+++.++ |..
T Consensus 2 ~~lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 2 TPLLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred Cceeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 3578999999999 57889999999999999999999999999999999999999999999999999999887655 567
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcccc----------C----CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLR----------G----KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~----------~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
|+..||.+.+|+. ||.||++.+...+ . .....+++.++|+.+||. +..+++..+||+|||+|+.
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~LE 159 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRLE 159 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHHH
Confidence 9999999999985 9999999873311 0 112246788999999997 5899999999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+.+|++|+||||.+||.+....++.+.|+++.++.|.||++|.|||+.+..+||||+||+.|+++++|+|+++..
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999999999999999988668999999999999999999999999999999999999876
Q ss_pred cCChHHHHHhh
Q 022337 285 AKHPMALRFLQ 295 (298)
Q Consensus 285 ~~~~~~~~~~~ 295 (298)
+ ....+.|++
T Consensus 240 d-p~VieAYLG 249 (250)
T COG0411 240 N-PRVIEAYLG 249 (250)
T ss_pred C-HHhHHHhcC
Confidence 3 234555543
No 37
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.1e-56 Score=405.94 Aligned_cols=220 Identities=34% Similarity=0.570 Sum_probs=196.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|+++.|+++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+...+++.+|
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 47999999999954457999999999999999999999999999999999999999999999999987666666778899
Q ss_pred EEeCCC--CCCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 142 MLFQIP--ALFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 142 ~v~Q~~--~l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|+||++ .++..||.||+.++....+.. ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999998 456679999999875432222 1235678899999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|||||++||+.++..+++.|++++++ |.|||++|||++.+.++|||+++|++|++++.|+++++.
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999765 899999999999999999999999999999999987653
No 38
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.5e-56 Score=393.93 Aligned_cols=209 Identities=31% Similarity=0.514 Sum_probs=185.1
Q ss_pred eEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 022337 63 KFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~~ 138 (298)
|++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 58999999999543 4699999999999999999999999999999999999999999999999998654432 3567
Q ss_pred ceEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 139 KVGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 139 ~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
.++|+||++.+|+ .|+.||+.++....+.. ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 8999999999887 59999999864332221 1245688899999996 578899999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||||||+|||+.+++.+.+.|++++++ |.|||++|||++.+..+||++++|++|++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999998754 89999999999999999999999999975
No 39
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.4e-55 Score=441.14 Aligned_cols=219 Identities=32% Similarity=0.472 Sum_probs=195.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++++||++.|++++++|+|+||+|++||.+||+||||||||||+++|+|++ |++|+|.+||.++.+++...+|++|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 5999999976655678999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+|++.+|++|++|||.++.. +.+++++.++++.+++++ ....+.+..||||||||++|||||+++
T Consensus 428 v~Q~~~LF~~TI~eNI~~g~~----~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 428 VGQNPQLPHGTLRDNVLLGNP----DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred ecCCCcCCCcCHHHHhhcCCC----CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999731 345678888888877642 233445678999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
|+|||||||||+||+.+++.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++......+
T Consensus 504 ~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G~~~eL~~~~~~y 577 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQGDYAELSQAGGLF 577 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecChHHHH-hCCEEEEEeCCeEeecCCHHHHHhcchHH
Confidence 999999999999999999999999998854 799999999999886 59999999999999999999987643333
No 40
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-55 Score=396.73 Aligned_cols=218 Identities=39% Similarity=0.602 Sum_probs=193.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFG-DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEEeEEEEEC-CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 489999999995 4679999999999999999999999999999999999999999999999999865432 2567999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCC----C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGK----K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|++.+++ .|+.||+.++....+. . ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 5999999986432211 1 1234577889999996 578899999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+.+.|.+++++.|+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 999999999999999999999999976558999999999999999999999999999999999988754
No 41
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.1e-56 Score=393.21 Aligned_cols=216 Identities=30% Similarity=0.530 Sum_probs=191.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++++++|+
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEe
Confidence 47899999995 56799999999999999999999999999999999999999999999999987643 34556789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+++. |++||+.++...++.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999988875 9999998864333322 1245678899999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||++||+.+++.+.+.|.++.++.|+|||++|||++.+..+|||+++|++|++++.++++++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999765589999999999999999999999999999998877653
No 42
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.4e-56 Score=420.41 Aligned_cols=220 Identities=40% Similarity=0.636 Sum_probs=195.9
Q ss_pred EeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----hcceEEEeCCC
Q 022337 72 ESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL----RRKVGMLFQIP 147 (298)
Q Consensus 72 ~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~----~~~ig~v~Q~~ 147 (298)
+| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+..++ ++++||+||++
T Consensus 2 ~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred cc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46 45679999999999999999999999999999999999999999999999999988776655 67899999999
Q ss_pred CCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 148 ALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 148 ~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
.+|+. ||+||+.++....+... ..+++.++++.+||+ .+.++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99985 99999998865444322 245688999999996 689999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHH
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF 293 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~ 293 (298)
|||.+++.+.+.+.++.++.|+|||+||||++++.++||||++|++|++++.|+++++... .+.+...|
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~ 229 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEF 229 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHHH
Confidence 9999999999999999766689999999999999999999999999999999999987543 33444444
No 43
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.9e-56 Score=396.75 Aligned_cols=219 Identities=37% Similarity=0.580 Sum_probs=193.2
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC---HHHHhcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSLRRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~---~~~~~~~i 140 (298)
++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ...+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999953267999999999999999999999999999999999999999999999999987655 34567789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccc--------cCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQL--------RGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~--------~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+|+||++.+|+ .|++||+.++... .+. ....+++.++++.+++. +..++++.+|||||||||+|||||
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHHHHH
Confidence 99999998887 5999999875321 011 11235678899999996 578899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999997655899999999999999999999999999999999988763
No 44
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-55 Score=413.26 Aligned_cols=235 Identities=27% Similarity=0.454 Sum_probs=204.7
Q ss_pred CCeEEEEeEEEEeCC---------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC
Q 022337 61 KPKFRVRELRKESDD---------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL 131 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~---------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~ 131 (298)
+++|+++||++.|.. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++..+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 468999999999952 24699999999999999999999999999999999999999999999999999776
Q ss_pred CHH---HHhcceEEEeCCC--CCCc-ccHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH
Q 022337 132 DVL---SLRRKVGMLFQIP--ALFE-GTVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR 202 (298)
Q Consensus 132 ~~~---~~~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR 202 (298)
+.. .+|++++||||++ .+++ .|+.+++..+.... +.. ...+++.++++.+|+++...++++++||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 543 4567899999998 4666 49999987653322 111 2245688999999996456799999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|+|||||+.+|++||+||||++||+.++..++++|+++.++.|.|+|+||||++.+.++||||++|++|+|++.|+++++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999876799999999999999999999999999999999999887
Q ss_pred hc-cCChHHHHHhh
Q 022337 283 SE-AKHPMALRFLQ 295 (298)
Q Consensus 283 ~~-~~~~~~~~~~~ 295 (298)
.. +.|++.+.++.
T Consensus 243 ~~~p~hpyt~~ll~ 256 (327)
T PRK11308 243 FNNPRHPYTQALLS 256 (327)
T ss_pred hcCCCCHHHHHHHH
Confidence 54 46777776654
No 45
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-55 Score=406.59 Aligned_cols=221 Identities=38% Similarity=0.638 Sum_probs=194.8
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC--HHHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD--VLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~--~~~~ 136 (298)
.++++||++.|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+ ...+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 38999999999632 36999999999999999999999999999999999999999999999999987543 2456
Q ss_pred hcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCC-chhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 137 RRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLD-SSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 137 ~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
++++||+||++ .+|+.||+||+.++....+... ..+++.++++.+|+. .++.++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 78899999998 4567799999998754333221 234678899999995 146789999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++|||||||+|||+.++..++++|++++++.|.|||++|||++++..+||||++|++|++++.|+++++.
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999997656899999999999999999999999999999999988764
No 46
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-55 Score=419.78 Aligned_cols=228 Identities=33% Similarity=0.525 Sum_probs=200.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .++++||
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 589999999995 5679999999999999999999999999999999999999999999999999876553 3567999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+|+. ||+||+.|+....+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999975 9999999876433322 1235688999999996 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||++||+.+++.+.+.|+++.++.|.|+|+||||++++..+||++++|++|++++.|+++++... .+.....|.
T Consensus 159 EPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~ 234 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFI 234 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhc
Confidence 999999999999999999999766689999999999999999999999999999999999887542 333444443
No 47
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.8e-55 Score=422.19 Aligned_cols=220 Identities=30% Similarity=0.455 Sum_probs=199.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+..++++++|
T Consensus 2 ~~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4799999999995 578999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEeCCCCCCc-ccHHHHhHhCcccc----C-C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLR----G-K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~----~-~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
|++|++.++. .|++||+.++...+ . . ..+.+++.++++.+++. ++.++++.+||||||||++|||||+++|+
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999998754 69999999875321 1 1 12345688999999996 68899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.++.+++++|+++++ .|+|||++|||++++.++|||+++|++|++++.|+++++..
T Consensus 160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999986 48999999999999999999999999999999999988654
No 48
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-55 Score=406.58 Aligned_cols=221 Identities=35% Similarity=0.564 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC----CCHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----LDVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~----~~~~ 134 (298)
|++++|+++.|+++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.. ....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 58999999999633 259999999999999999999999999999999999999999999999999853 2234
Q ss_pred HHhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.+++.+||+||++ .+|+.||.||+.|+....+... .++++.++++.+++...+.++++.+||||||||++|||||+
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 5678899999998 5777899999998764333221 23467889999999534778999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++.+..+||||++|++|++++.|+++++..
T Consensus 161 ~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 161 MEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred hCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999999999999999999999998764 8999999999999999999999999999999999988643
No 49
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-55 Score=407.04 Aligned_cols=220 Identities=39% Similarity=0.597 Sum_probs=194.4
Q ss_pred EEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC----CCHHH
Q 022337 64 FRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----LDVLS 135 (298)
Q Consensus 64 l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~----~~~~~ 135 (298)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 8999999999632 469999999999999999999999999999999999999999999999999853 23345
Q ss_pred HhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 136 LRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 136 ~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
.++++||+||++ .+++.||.||+.|+....+... ..+++.++++.++|...+.++++.+|||||||||+|||||+.
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~ 162 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAM 162 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 677899999997 4677799999998754333222 234678899999996456789999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++|||||||+|||+.++..++++|++++++.|.|||++|||++.+..+||||++|++|++++.|+++++.
T Consensus 163 ~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999997666899999999999999999999999999999999988764
No 50
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.2e-55 Score=397.00 Aligned_cols=220 Identities=39% Similarity=0.601 Sum_probs=193.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~~~~ 139 (298)
|++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 57899999999524679999999999999999999999999999999999999999999999999865543 235678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCcccc--------CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
++|+||++.+++ .|++||+.++.... +. ....+++.++++.+++. +..++++.+|||||||||+||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~a 159 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIARA 159 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998887 59999998753211 11 12235678899999996 57889999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|+.+|++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+.++||++++|++|++++.|+++++.
T Consensus 160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 999999999999999999999999999999987655899999999999999999999999999999999988763
No 51
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-55 Score=410.20 Aligned_cols=223 Identities=33% Similarity=0.498 Sum_probs=196.0
Q ss_pred CCCeEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----
Q 022337 60 QKPKFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---- 131 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~---- 131 (298)
..++|+++|+++.|+++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 45689999999999632 3699999999999999999999999999999999999999999999999988542
Q ss_pred ------------CHHHHhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCC
Q 022337 132 ------------DVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEI 195 (298)
Q Consensus 132 ------------~~~~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~L 195 (298)
....+++++|||||++ .+|+.|++||+.++....+... ..+++.++++.++++..+.++.+.+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~L 177 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGL 177 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 2345678899999998 5777899999998753222221 23467889999999635788999999
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|.++.++ |.|||+||||++.+..+|||+++|++|++++
T Consensus 178 SgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~adri~vl~~G~i~~ 256 (320)
T PRK13631 178 SGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLEVADEVIVMDKGKILK 256 (320)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999998754 8999999999999989999999999999999
Q ss_pred eeChhhhh
Q 022337 276 VLKPDLLS 283 (298)
Q Consensus 276 ~g~~~~~~ 283 (298)
.|+++++.
T Consensus 257 ~g~~~~~~ 264 (320)
T PRK13631 257 TGTPYEIF 264 (320)
T ss_pred eCCHHHHh
Confidence 99998764
No 52
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-56 Score=390.27 Aligned_cols=210 Identities=40% Similarity=0.643 Sum_probs=185.9
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..++.++|+
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEEE
Confidence 47899999995 567999999999999999999999999999999999999999999999999986543 235689999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+++ .|++||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99998887 59999998764322221 1234678899999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+++.|++++++.|+|||++|||++++..+||++++|++|++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999987655899999999999999999999999999998654
No 53
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6e-55 Score=436.67 Aligned_cols=225 Identities=38% Similarity=0.593 Sum_probs=200.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++|+|++++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+|+++++...+|++|+
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 35999999999975678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+|||++.+|+.||+|||.++.. ..+++++.++++..++++ ...++.+..||||||||++||||+++
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRP----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred EEcccceeecccHHHHHhcCCC----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999853 245677888877776542 23344567899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
+|++|+||||||+||+.++..+.+.+.++.+ ++|+|+|+|+++.+.. ||+|+||++|++++.|+++++......+.+
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~ 559 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGTHEELLAKGGLYAR 559 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhHHHh-CCEEEEEECCEEEEecCHHHHHHcCCHHHH
Confidence 9999999999999999999999999998864 6899999999999977 999999999999999999999775333444
Q ss_pred HH
Q 022337 292 RF 293 (298)
Q Consensus 292 ~~ 293 (298)
.+
T Consensus 560 l~ 561 (567)
T COG1132 560 LY 561 (567)
T ss_pred HH
Confidence 33
No 54
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.7e-55 Score=392.29 Aligned_cols=214 Identities=51% Similarity=0.779 Sum_probs=188.4
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-----CCCccEEEECCEeCCCCC--HHHH
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-----EPPSGTVFLDGRDITDLD--VLSL 136 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-----~p~~G~I~i~g~~i~~~~--~~~~ 136 (298)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++...+ ...+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 47899999995 567999999999999999999999999999999999999 999999999999986654 3456
Q ss_pred hcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCCchhhcCC--CCCCChhHHHHHHHHHHHcC
Q 022337 137 RRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLDSSFLNKT--GGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkQRv~iAral~~ 211 (298)
+++++|+||++.+|+.|++||+.++....+... .++++.++++.+++. +..++. +.+||||||||++|||||+.
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCC-hHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 778999999998886699999988643322211 235678899999997 455666 59999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+|++|||||||+|||+.+++.+.+.|++++++ +|||++|||++.+..+||++++|++|++++.|++++
T Consensus 159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 159 EPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999753 899999999999999999999999999999988764
No 55
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.5e-55 Score=401.54 Aligned_cols=223 Identities=30% Similarity=0.487 Sum_probs=196.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHh
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLR 137 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~ 137 (298)
+++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.. .++
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 5 ANLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred cceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 45899999999995 56799999999999999999999999999999999999999999999999998755432 346
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCcccc-CCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLR-GKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
++++|+||++.+|+. |+.||+.++.... .... ..+++.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p 162 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEP 162 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 779999999998875 9999998753221 1111 234577889999996 5788999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++.+.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999765589999999999999999999999999999999999887653
No 56
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.5e-55 Score=394.56 Aligned_cols=218 Identities=35% Similarity=0.635 Sum_probs=192.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ig~ 142 (298)
++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.... ++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999995 5679999999999999999999999999999999999999999999999999876655443 467999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCC------------CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGK------------KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+||++.+|+. |++||+.++...... ....+++.++++.++++ +..++++.+|||||||||+|||||
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHHHH
Confidence 9999998885 999999876432211 11234578899999996 578899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+|++|||||||++||+.+++.+++.|+++++ .|+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 999999999999999999999999999999876 48999999999999999999999999999999998887643
No 57
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-55 Score=392.29 Aligned_cols=221 Identities=40% Similarity=0.617 Sum_probs=194.6
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
|++++|++++|++. .++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 58899999999532 1799999999999999999999999999999999999999999999999998765432 34
Q ss_pred hcceEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
++.++|+||++.+|+ .|+.||+.++....+.. ...+++.++++.++++ +..++++.+||||||||++|||||+.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 678999999999987 59999998764322221 1234678899999996 5788999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+++||||||+|||+.++..+.+.|++++++.|+|||++||+++.+..+||++++|++|++++.++++++..
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999876558999999999999999999999999999999998877643
No 58
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.8e-55 Score=407.80 Aligned_cols=220 Identities=28% Similarity=0.440 Sum_probs=194.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+.+++++|++++|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++... ....++++
T Consensus 2 ~~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 2 NVAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred CcEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 34799999999995 56799999999999999999999999999999999999999999999999998643 34567889
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||+||++.+++ .|++||+.+....++... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999887 599999986432222221 134567889999996 57889999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.+++.+++.|++++++ |.|||++|||++++..+||++++|++|+++..|+++++..
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999764 8999999999999999999999999999999999888743
No 59
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-54 Score=442.49 Aligned_cols=215 Identities=36% Similarity=0.578 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|++ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+++...+|++|
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 35999999999953 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|||+|++.+|++|++|||.++.. .+++++.++++.+++++. .....+..||||||||++|||||+
T Consensus 530 ~~v~Q~~~lf~gTI~eNi~~~~~-----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 530 GVVLQNGRLMSGSIFENIAGGAP-----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred EEEccCCccCcccHHHHHhcCCC-----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998732 356788899999888632 122345789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
++|++||||||||+||+.+++++++.|+++ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G~~~~Ll~~~ 675 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQGTYDELMARE 675 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHHH-cCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999876 579999999999886 49999999999999999999987643
No 60
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-55 Score=407.40 Aligned_cols=221 Identities=33% Similarity=0.541 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--------
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD-------- 130 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~-------- 130 (298)
+|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999643 259999999999999999999999999999999999999999999999887521
Q ss_pred ----------------CCHHHHhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcC
Q 022337 131 ----------------LDVLSLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNK 190 (298)
Q Consensus 131 ----------------~~~~~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~ 190 (298)
.+...+++++||+||++ .++..||+||+.|+....+... ..+++.++++.+|+..++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 12345678899999986 4666799999998764433322 245688999999996357899
Q ss_pred CCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 191 TGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 191 ~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++++ .|.|||+||||++.+..+||||++|++
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999975 499999999999999999999999999
Q ss_pred CEEEEeeChhhhhc
Q 022337 271 GEIVEVLKPDLLSE 284 (298)
Q Consensus 271 G~i~~~g~~~~~~~ 284 (298)
|++++.|+++++..
T Consensus 241 G~i~~~g~~~~~~~ 254 (305)
T PRK13651 241 GKIIKDGDTYDILS 254 (305)
T ss_pred CEEEEECCHHHHhc
Confidence 99999999988643
No 61
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-55 Score=392.81 Aligned_cols=232 Identities=39% Similarity=0.646 Sum_probs=200.2
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|++.+.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 46899999995325799999999999999999999999999999999999999999999999998766655667789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||++.+|+ .|++||+.++....+.. ...+++.++++.+++.. .+.++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 99999887 59999998764332222 12356788999999963 3678999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 295 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 295 (298)
|||+|||+.+++.+.+.|++++++.|+|||++||+++.+..+||++++|++|++++.++++++.+. .+++...|.+
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 237 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEFVG 237 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCChHHHHHhC
Confidence 999999999999999999999765589999999999999999999999999999999998877432 3345454443
No 62
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-55 Score=401.44 Aligned_cols=221 Identities=30% Similarity=0.528 Sum_probs=195.7
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++++++|++++|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+...++++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 479999999999532 459999999999999999999999999999999999999999999999999976666667788
Q ss_pred eEEEeCCCC-CC-cccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA-LF-EGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~-l~-~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||+||++. ++ ..||+||+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999983 44 4699999998754333221 235688899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+++.|++++++.|+|||++|||++.+ .+|||+++|++|++++.|+++++..
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999765589999999999998 4799999999999999999887643
No 63
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-55 Score=401.55 Aligned_cols=223 Identities=34% Similarity=0.584 Sum_probs=196.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT--DLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~--~~~~~~~~~ 138 (298)
+++++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 358999999999954567999999999999999999999999999999999999999999999999984 223345678
Q ss_pred ceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 139 KVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 139 ~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
.+||+||++ .+++.|++||+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|+
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999998 3566799999988643222221 235678899999996 57899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.++..+++.|++++++.|.|||++|||++.+..+|||+++|++|++++.|+++++..
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999976558999999999999999999999999999999999887643
No 64
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.8e-55 Score=388.36 Aligned_cols=217 Identities=31% Similarity=0.492 Sum_probs=190.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ig~ 142 (298)
|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.... ++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 47899999995 5679999999999999999999999999999999999999999999999999876654443 567999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHc-CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLA-DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+||++.+|+. |++||+.++..........+++.++++.+ ++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999998885 99999998654322112234566778887 575 56789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||+|||+.+++.+++.|+++++ .|+|||++|||++.+..+||++++|++|++++.++++++.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999876 4899999999999999999999999999999998877653
No 65
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.9e-55 Score=398.19 Aligned_cols=232 Identities=31% Similarity=0.455 Sum_probs=200.5
Q ss_pred eEEEEeEEEEeCC--------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH
Q 022337 63 KFRVRELRKESDD--------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~--------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~ 134 (298)
+++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 6899999999953 35799999999999999999999999999999999999999999999999998765443
Q ss_pred ---HHhcceEEEeCCCC--CCc-ccHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 135 ---SLRRKVGMLFQIPA--LFE-GTVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 135 ---~~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
.+++.++|+||++. +++ .|+.||+.++.... ... ...+++.++++.+++...+.++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 24678999999973 555 59999997653211 111 2345688899999995346789999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
||||+.+|++|||||||++||+.++..+.+.|+++.++.|+|||++|||++.+..+||++++|++|++++.|+++++...
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 241 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSF 241 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCC
Confidence 99999999999999999999999999999999999765589999999999999999999999999999999999998766
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.+++.+.+.
T Consensus 242 ~~~~~~~~~ 250 (265)
T TIGR02769 242 KHPAGRNLQ 250 (265)
T ss_pred CCHHHHHHH
Confidence 676666554
No 66
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-55 Score=402.18 Aligned_cols=222 Identities=33% Similarity=0.549 Sum_probs=194.8
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~ 134 (298)
.++++||+++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999532 3699999999999999999999999999999999999999999999999998542 234
Q ss_pred HHhcceEEEeCCC--CCCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.++++|||+||++ .+|+.|+.||+.++....+.. ...+++.++++.+|+..+..++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 5678899999997 467779999999875432222 123567889999999634678899999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.++..+.++|+++.++.|.|||++|||++.+..+|||+++|++|++++.|+++++..
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999976568999999999999999999999999999999999887643
No 67
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-55 Score=409.32 Aligned_cols=233 Identities=27% Similarity=0.408 Sum_probs=199.7
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC----CCccEEEECCEeCCCCCHHH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE----PPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~----p~~G~I~i~g~~i~~~~~~~ 135 (298)
+|+++||++.|+++ ..+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++..++..+
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999642 369999999999999999999999999999999999998 48999999999998776544
Q ss_pred Hh----cceEEEeCCCC--CCc-ccHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCc--hhhcCCCCCCChhHHHHH
Q 022337 136 LR----RKVGMLFQIPA--LFE-GTVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDS--SFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 136 ~~----~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkQRv 203 (298)
++ +.|+||||++. +++ .|+.+++....... +.. ...+++.++++.+||.+ ...++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 32 46999999984 566 48888776543322 111 23456889999999963 356889999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|||||+.+|++||+||||++||+.++.+++++|++++++.|.|+|+||||++.+..+||||++|++|+|++.|+++++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999998766999999999999999999999999999999999998885
Q ss_pred c-cCChHHHHHhh
Q 022337 284 E-AKHPMALRFLQ 295 (298)
Q Consensus 284 ~-~~~~~~~~~~~ 295 (298)
+ +.|++.+.++.
T Consensus 243 ~~p~hpyt~~ll~ 255 (326)
T PRK11022 243 RAPRHPYTQALLR 255 (326)
T ss_pred hCCCChHHHHHHH
Confidence 4 46777766643
No 68
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.6e-55 Score=372.23 Aligned_cols=216 Identities=37% Similarity=0.497 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|+.+++|.+.|. .. ==.++++|++||++||+||||||||||+++|+|+..|.+|+|+|+|++....++ .+|-+++
T Consensus 1 ~l~L~~V~~~y~-~~--~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSm 75 (231)
T COG3840 1 MLALDDVRFSYG-HL--PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75 (231)
T ss_pred CccccceEEeeC-cc--eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhh
Confidence 467889999994 32 236899999999999999999999999999999999999999999999876554 4578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcccc--CCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLR--GKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||+.+||.. ||.+|+.+|.... -....+++++.++..+|+. .+.++.|.+|||||||||++||+|+++-+||+||
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChh-hHhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence 9999999985 9999999986421 1123467799999999997 5899999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||+|||.-+.+++.++.+++.+++.|++||||.++++.+++|+++++++|+|.+.|+..++..
T Consensus 155 EPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred CchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999988754
No 69
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.1e-55 Score=387.31 Aligned_cols=215 Identities=33% Similarity=0.564 Sum_probs=190.1
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|+++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 4789999999532 6799999999999999999999999999999999999999999999999998653 2456778999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+++ .|++||+.+....++... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 158 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD 158 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 999999886 599999987643333221 235678899999996 5778899999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|||++||+.+++.+.+.|+++++ +.|||++|||++.+..+||++++|++|++++.|+++++
T Consensus 159 EP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 159 EPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999864 58999999999999999999999999999999887654
No 70
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.8e-55 Score=387.61 Aligned_cols=208 Identities=40% Similarity=0.592 Sum_probs=182.8
Q ss_pred EEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---H-H
Q 022337 64 FRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---S-L 136 (298)
Q Consensus 64 l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~-~ 136 (298)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. . .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999642 5799999999999999999999999999999999999999999999999998765432 2 3
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
++.++|+||++.+|+. |++||+.++....+.. ..++++.++++.+|++ +..++++.+|||||||||+|||||+.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 4679999999998875 9999999865433322 1235678899999996 5678999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+. +||++++|++|++
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 160 KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999997645899999999999987 9999999999974
No 71
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=6e-55 Score=386.33 Aligned_cols=212 Identities=31% Similarity=0.545 Sum_probs=187.6
Q ss_pred eEEEEeEEEEeCCCC---cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGA---PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~---~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
|++++|++++|++.. ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....+++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhh
Confidence 478999999995321 69999999999999999999999999999999999999999999999999864 33456788
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++|+||++.+|+. |++||+.+....++.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999998885 9999998754332222 1245678899999996 5788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||||||++||+.+++.+.+.|++++++ |+|+|++|||++.+..+||++++|++|++++.|
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999654 899999999999999999999999999997643
No 72
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-54 Score=415.77 Aligned_cols=214 Identities=41% Similarity=0.628 Sum_probs=188.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----hcceEEEeCCCCCCcc-c
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL----RRKVGMLFQIPALFEG-T 153 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~----~~~ig~v~Q~~~l~~~-t 153 (298)
+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+...+ ++++||+||++.+|+. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 8999999999999999999999999999999999999999999999999977654332 3579999999999974 9
Q ss_pred HHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHH
Q 022337 154 VVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQ 231 (298)
Q Consensus 154 v~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~ 231 (298)
++||+.++....+.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||++||+.+++
T Consensus 123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~ 201 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRT 201 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 999999875433322 2235688899999997 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHH
Q 022337 232 NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRF 293 (298)
Q Consensus 232 ~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~ 293 (298)
.+.+.|.++.++.|+|||++|||++++.++||++++|++|++++.|+++++.. +.+.+...|
T Consensus 202 ~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~ 264 (400)
T PRK10070 202 EMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTF 264 (400)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHH
Confidence 99999999976568999999999999999999999999999999999988754 233444444
No 73
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-54 Score=407.77 Aligned_cols=234 Identities=26% Similarity=0.430 Sum_probs=199.3
Q ss_pred CeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC----CCccEEEECCEeCCCCCHH
Q 022337 62 PKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE----PPSGTVFLDGRDITDLDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~----p~~G~I~i~g~~i~~~~~~ 134 (298)
++|+++||+++|.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++..++..
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999942 2469999999999999999999999999999999999997 5899999999999776654
Q ss_pred HH----hcceEEEeCCCC--CCc-ccHHHHhHhCcc---ccC---C--CccHHHHHHHHHHcCCCc--hhhcCCCCCCCh
Q 022337 135 SL----RRKVGMLFQIPA--LFE-GTVVDNIRYGPQ---LRG---K--KLTENEVYKLLSLADLDS--SFLNKTGGEISV 197 (298)
Q Consensus 135 ~~----~~~ig~v~Q~~~--l~~-~tv~eni~~~~~---~~~---~--~~~~~~~~~~l~~~~l~~--~~~~~~~~~LSg 197 (298)
++ ++.|+||||++. +.+ .||.+|+.+... ..+ . ....+++.++++.+||.+ +..++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 33 347999999986 455 499999975321 111 0 112356889999999963 346889999999
Q ss_pred hHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 198 GqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||||||+|||||+.+|++|||||||++||+.++.+++++|+++.++.|.|+|+||||++.+..+||||++|++|+|++.|
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999998766899999999999999999999999999999999
Q ss_pred Chhhhh-ccCChHHHHHhh
Q 022337 278 KPDLLS-EAKHPMALRFLQ 295 (298)
Q Consensus 278 ~~~~~~-~~~~~~~~~~~~ 295 (298)
+++++. .+.+++.+.|+.
T Consensus 242 ~~~~i~~~p~~~y~~~ll~ 260 (330)
T PRK15093 242 PSKELVTTPHHPYTQALIR 260 (330)
T ss_pred CHHHHHhCCCCHHHHHHHH
Confidence 998875 346777766654
No 74
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.1e-54 Score=388.08 Aligned_cols=218 Identities=31% Similarity=0.567 Sum_probs=192.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ig~ 142 (298)
++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.... ++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 47899999995 5679999999999999999999999999999999999999999999999999876554433 467999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+|+. |++||+.++...++.. ...+++.++++.+++. +..++.+.+||||||||++|||||+.+|++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 9999998885 9999998764322221 1234577899999996 5788999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.++++++..
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999998764 8999999999999999999999999999999999887643
No 75
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.6e-55 Score=384.08 Aligned_cols=207 Identities=28% Similarity=0.569 Sum_probs=185.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..+++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEe
Confidence 47899999995 56899999999999999999999999999999999999999999999999987643 3456789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
||++.+++ .|+.||+.++...++. .++++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 154 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGI--RKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPT 154 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCC--cHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99998886 5999999876432222 356688899999996 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+|||+.+++.+.+.|+++++ .|+|+|++|||++.+..+||++++|++|++++.|
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 155 NGLDPDGIKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999876 4899999999999999999999999999998654
No 76
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-54 Score=388.33 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=189.0
Q ss_pred CCeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH--
Q 022337 61 KPKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-- 135 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-- 135 (298)
+++++++|+++.|+++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+...
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4689999999999632 46999999999999999999999999999999999999999999999999987765432
Q ss_pred -H-hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 136 -L-RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 136 -~-~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+ ++.++|+||++.+|+. |++||+.++....+.. ..++++.++++.+|+. +..++++.+||||||||++|||||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~ 161 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALV 161 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 2 3679999999988875 9999998854322221 2235678899999996 5778999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
.+|++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+.. +|++++|++|++++.++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAELS 228 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999875458999999999999876 57999999999998775
No 77
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-54 Score=407.94 Aligned_cols=236 Identities=28% Similarity=0.400 Sum_probs=202.6
Q ss_pred CCCeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCH
Q 022337 60 QKPKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLDV 133 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~~ 133 (298)
.+++++++|+++.|.. ...+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++..++.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 3568999999999952 236999999999999999999999999999999999999996 9999999999987765
Q ss_pred HHH---h-cceEEEeCCC--CCCc-ccHHHHhHhCccccC-CC--ccHHHHHHHHHHcCCCc--hhhcCCCCCCChhHHH
Q 022337 134 LSL---R-RKVGMLFQIP--ALFE-GTVVDNIRYGPQLRG-KK--LTENEVYKLLSLADLDS--SFLNKTGGEISVGQAQ 201 (298)
Q Consensus 134 ~~~---~-~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkQ 201 (298)
.++ | +.|+||||++ .+++ .|+.+|+......+. .. ...+++.++++.+++++ ...++++++|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 543 3 4799999998 4666 499998876543221 21 12356788999999963 2457899999999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
||+|||||+.+|++||+||||++||+.++..++++|++++++.|.|+|+||||++.+.++||||++|++|+|++.|++++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~ 248 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARD 248 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999987668999999999999999999999999999999999998
Q ss_pred hhc-cCChHHHHHhh
Q 022337 282 LSE-AKHPMALRFLQ 295 (298)
Q Consensus 282 ~~~-~~~~~~~~~~~ 295 (298)
+.. +.|++.+.+..
T Consensus 249 i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 249 VFYQPSHPYSIGLLN 263 (330)
T ss_pred HHhCCCCHHHHHHHH
Confidence 754 46778777654
No 78
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6.1e-55 Score=383.25 Aligned_cols=203 Identities=28% Similarity=0.492 Sum_probs=180.5
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF 144 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~ 144 (298)
+++|++++|++++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...+++++|+|
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 368999999532679999999999999999999999999999999999999999999999998753 34567899999
Q ss_pred CCCC--CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 145 QIPA--LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 145 Q~~~--l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
|++. +++.|+.||+.++....+ ...+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|||||||
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 154 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELD--AGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPT 154 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcC--ccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 9974 456799999988643222 2245688999999997 5789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
+|||+.+++.+.+.|++++++ |.|+|++|||++.+..+||++++|++|+++
T Consensus 155 ~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 155 SGLDYKNMERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred ccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999998754 899999999999999999999999999974
No 79
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-55 Score=398.78 Aligned_cols=233 Identities=34% Similarity=0.534 Sum_probs=203.2
Q ss_pred EEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-C----CccEEEECCEeCCCCCHHH
Q 022337 64 FRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-P----PSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 64 l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p----~~G~I~i~g~~i~~~~~~~ 135 (298)
++++||+.+|... ..+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|+++..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 7899999998643 369999999999999999999999999999999999998 4 5799999999998888654
Q ss_pred ---Hh-cceEEEeCCCC--CCcc-cHHHHhHhCccccCC----CccHHHHHHHHHHcCCCch--hhcCCCCCCChhHHHH
Q 022337 136 ---LR-RKVGMLFQIPA--LFEG-TVVDNIRYGPQLRGK----KLTENEVYKLLSLADLDSS--FLNKTGGEISVGQAQR 202 (298)
Q Consensus 136 ---~~-~~ig~v~Q~~~--l~~~-tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkQR 202 (298)
+| ++|+|+||+|. |-|. ||.+.+.-....+.. .+..+++.++|+.+|+++. ..+.||++||||||||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 33 57999999984 5553 887777655443221 1235678899999999743 6799999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|.||.||+.+|++||+||||++||...+.+++++|++++++.|.|+|+||||+..+.++||||+||..|+|+|.|+.+++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999887
Q ss_pred h-ccCChHHHHHhhh
Q 022337 283 S-EAKHPMALRFLQL 296 (298)
Q Consensus 283 ~-~~~~~~~~~~~~~ 296 (298)
. ++.|+|++.++..
T Consensus 242 ~~~P~HPYT~~Ll~s 256 (316)
T COG0444 242 FKNPKHPYTRGLLNS 256 (316)
T ss_pred hcCCCChHHHHHHHh
Confidence 5 5688999887653
No 80
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-54 Score=397.45 Aligned_cols=222 Identities=32% Similarity=0.545 Sum_probs=196.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++++|
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 46899999999954457999999999999999999999999999999999999999999999999987655556778899
Q ss_pred EEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 142 MLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 142 ~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|+||++. +++.|+.||+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~lli 160 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLV 160 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999984 566799999987643222221 234578899999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.+++.+.+.|++++++.|.|||++||+++++.++|||+++|++|++++.|+++++..
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 161 LDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999976558999999999999999999999999999999999887743
No 81
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-54 Score=418.79 Aligned_cols=223 Identities=35% Similarity=0.513 Sum_probs=200.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++.+|+++.|++++++++|+||++++|+.+||+|+||||||||+++|+|+.+|++|+|.+||.++.+.+...+|++++|
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 35556999999877799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhc----------CCCCCCChhHHHHHHHHHHHcCC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN----------KTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+|+|.+|+.|++||+.++.. +.+++++.++++..++.+ +.+ +.+..|||||+|||++||||+++
T Consensus 400 v~Q~p~lf~gTireNi~l~~~----~~s~e~i~~al~~a~l~~-~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 400 VSQNPYLFAGTIRENILLARP----DASDEEIIAALDQAGLLE-FVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred eCCCCccccccHHHHhhccCC----cCCHHHHHHHHHHhcHHH-hhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999998742 356788899999888753 333 34567999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~ 292 (298)
++++|+|||||+||.++++.+++.|.++++ ++|+|++||++..+.+ ||+|++|++|++++.|+++++.++..-+.+.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l 551 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecCCceeccCCHHHHhhcCcHHHHH
Confidence 999999999999999999999999999976 6899999999999976 8999999999999999999997754444444
Q ss_pred H
Q 022337 293 F 293 (298)
Q Consensus 293 ~ 293 (298)
+
T Consensus 552 ~ 552 (559)
T COG4988 552 L 552 (559)
T ss_pred H
Confidence 3
No 82
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.9e-54 Score=431.45 Aligned_cols=222 Identities=30% Similarity=0.474 Sum_probs=198.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++++|++++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++.+++...+|++|+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 45999999999975567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|+||++.+|+.|++|||.++. +.+++++.++++.+|+++. ...+.+..||||||||++|||||++
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~-----~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGR-----DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred EEccCCccccchHHHHHHhCC-----CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999873 2356778888888887521 2233467899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+....+.+
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~ 570 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTIV-EADTILVLHRGQAVEQGTHQQLLAAQGRYWQ 570 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEEcCHHHHHhCCCHHHH
Confidence 9999999999999999999999999998854 689999999999886 5999999999999999999998765444443
No 83
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-55 Score=386.09 Aligned_cols=211 Identities=38% Similarity=0.605 Sum_probs=186.8
Q ss_pred EEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 64 FRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 4789999999532 579999999999999999999999999999999999999999999999998753 35679
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+|+||++.+++ .|++||+.++...++.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 154 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLL 154 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999887 59999998764332221 1235678899999996 57889999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe--CCEEEEeeChh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--NGEIVEVLKPD 280 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~--~G~i~~~g~~~ 280 (298)
|||||+|||+.+++.+++.|+++.++.|+|||++|||++.+..+||++++|+ +|++++.++.+
T Consensus 155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999866558999999999999999999999999 79999887653
No 84
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7e-55 Score=384.59 Aligned_cols=210 Identities=34% Similarity=0.572 Sum_probs=186.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++++|+
T Consensus 1 i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~--~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP--KDRDIAMV 77 (213)
T ss_pred CEEEeeEEEEC-CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--ccceEEEE
Confidence 47899999995 4689999999999999999999999999999999999999999999999999865432 24679999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+++ .|++||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99998886 49999998864332221 1234578889999996 57899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+++.|++++++.|+|||++|||++++..+||++++|++|++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999997655899999999999999999999999999998764
No 85
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-54 Score=379.25 Aligned_cols=231 Identities=31% Similarity=0.464 Sum_probs=202.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~i 140 (298)
+|++++||+..|+ +.++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.++|+|+...++.+. |..|
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 5899999999994 6789999999999999999999999999999999999999999999999999999877654 6779
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCcc-HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKLT-ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+||||...+|+. ||+||+.++......... ....+++.+.|-.-.+..+++.++|||||||.++|||||+.+|++|+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 999999999985 999999998654322111 122666777775324678899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHHHh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
||||.||-|.-.+++.+.|++++++.|.||++|.++...+.+++||.+||++|+|+.+|+.+++... ....+.|+
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~-~~v~~~yL 235 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD-PDVREAYL 235 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC-HHHHHHhh
Confidence 9999999999999999999999877789999999999999999999999999999999999998763 23445554
No 86
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-54 Score=388.54 Aligned_cols=221 Identities=30% Similarity=0.442 Sum_probs=193.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ 139 (298)
.++++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .++.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 3 KVMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred ccEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 35899999999995 567999999999999999999999999999999999999999999999999987665443 4678
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHc-CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLA-DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
++|+||++.+|+. |+.||+.++..........+++.++++.+ ++. +..++++.+||||||||++|||||+.+|++||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ill 160 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999998884 99999988642211111234466777777 475 46778899999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.+++.+.+.|++++++ |.|||++|||++++.++|||+++|++|++++.|+++++..
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999998764 8999999999999999999999999999999999988754
No 87
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2e-54 Score=388.68 Aligned_cols=219 Identities=37% Similarity=0.589 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC--HHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD--VLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~--~~~~~~~i 140 (298)
|++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++.+
T Consensus 1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 478999999995 567999999999999999999999999999999999999999999999999986532 23456789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++.+++ .|++||+.++.. ..+.. ...+++.++++.+|++ +..++++.+||||||||++|||||+.+|+++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 158 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLM 158 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998887 599999987632 12211 1234578899999996 5778999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.++..+.+.|++++++ |+|+|++|||++.+..+||++++|++|++++.|+++++.+
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 999999999999999999999998754 8999999999999999999999999999999999888754
No 88
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=2.5e-54 Score=389.81 Aligned_cols=228 Identities=44% Similarity=0.658 Sum_probs=196.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----ccEEEECCEeCCCC--CHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITDL--DVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-----~G~I~i~g~~i~~~--~~~~ 135 (298)
+++++|++++|+ +..+++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++... +...
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 478999999995 457999999999999999999999999999999999999998 99999999998643 2345
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
.++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ +..++++.+||||||||++|||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 57789999999988889999999876433221 1 12356788999999952 357889999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CCh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHP 288 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~ 288 (298)
+.+|+++||||||+|||+.++..++++|+++++ ++|+|++|||++.+..+||++++|++|++++.|+++++... .+.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 237 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEK 237 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCh
Confidence 999999999999999999999999999999865 48999999999999999999999999999999999887543 344
Q ss_pred HHHHH
Q 022337 289 MALRF 293 (298)
Q Consensus 289 ~~~~~ 293 (298)
....|
T Consensus 238 ~~~~~ 242 (247)
T TIGR00972 238 RTEDY 242 (247)
T ss_pred HHHHH
Confidence 43333
No 89
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.6e-54 Score=385.66 Aligned_cols=215 Identities=39% Similarity=0.563 Sum_probs=184.5
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~ 136 (298)
+++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999543 279999999999999999999999999999999999999999999999999876553 356
Q ss_pred hcceEEEeCCC--CCCc-ccHHHHhHhCccccCCCcc---HHH-HHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 137 RRKVGMLFQIP--ALFE-GTVVDNIRYGPQLRGKKLT---ENE-VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 137 ~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~---~~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++.++|+||++ .+++ .|++||+.++....+.... .++ +.++++.+++.....++++.+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 77899999998 3554 5999999875432221111 122 247889999953467899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+.+|++|||||||++||+.+++.+.+.|++++++.|.|||++|||++.+..+||++++|++|++++.|
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999997655899999999999999999999999999998653
No 90
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-54 Score=399.32 Aligned_cols=221 Identities=32% Similarity=0.575 Sum_probs=192.9
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~ 134 (298)
+++++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 58999999999632 4699999999999999999999999999999999999999999999999998542 234
Q ss_pred HHhcceEEEeCCC--CCCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
..++.+||+||++ .+|+.|+.||+.++....+.. ...+++.++++.+++...+.++++.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 5567899999997 466679999998764322221 123467889999999534788999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998654 8999999999999999999999999999999999887643
No 91
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=6e-54 Score=430.39 Aligned_cols=223 Identities=32% Similarity=0.494 Sum_probs=197.2
Q ss_pred eEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++++|++++|+++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++.+++...+++.|+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 59999999999653 57999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|+||++.+|+.|++|||.++.. ...+++++.++++.+++++. .....+.+||||||||++|||||++
T Consensus 421 ~v~Q~~~lf~~Ti~~Ni~~~~~---~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVHLFNDTIANNIAYART---EQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCceeecchHHHHHhcCCC---CCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998731 12356788888888886421 1233456799999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
+|++||||||||+||+.++..+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+....+.+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~ 574 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-KADEILVVEDGEIVERGTHAELLAQNGVYAQ 574 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEEeCCHHHHHhCCChHHH
Confidence 9999999999999999999999999998854 799999999998875 5999999999999999999998765443433
No 92
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-54 Score=394.16 Aligned_cols=223 Identities=30% Similarity=0.451 Sum_probs=197.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.
T Consensus 8 ~~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 8 SDTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CCceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 346899999999995 5689999999999999999999999999999999999999999999999999876666667788
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccc-cC----C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQL-RG----K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~-~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
++|+||++.+++ .|+.||+.++... .. . ....+++.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999988776 4999999976321 11 1 11235678899999996 578999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|++|||||||+|||+.+++.+.+.|.+++++.|.|||++||+++++.++||++++|++|++++.|+++++..
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999999999976558999999999999999999999999999999998887643
No 93
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=8.8e-55 Score=384.22 Aligned_cols=208 Identities=35% Similarity=0.548 Sum_probs=184.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~~~ 139 (298)
|++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 588999999995346799999999999999999999999999999999999999999999999998765432 35678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++|+||++.+|+ .|+.||+.++....+.. ..++++.++++.+++. +..++.+.+||||||||++|||||+.+|++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLL 159 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 999999999887 59999998864322221 1245678899999996 5678899999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
||||||+|||+.++..+.+.|++++++ |+|||++|||++++..+||++++|++|+
T Consensus 160 lLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 160 LADEPTGNLDPDLSERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999998654 8999999999999999999999999985
No 94
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3e-54 Score=386.81 Aligned_cols=228 Identities=28% Similarity=0.453 Sum_probs=196.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++.++|
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-~~~~~i~~ 78 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-AALARLGV 78 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-hhhhhEEE
Confidence 478999999995 5679999999999999999999999999999999999999999999999999866543 33458999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+++ .|++||+.+.....+.. ...+++.++++.+|+. +..++++.+||||||||++|||||+.+|+++|||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999998865 59999998764332221 1234578899999996 5788999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc--CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA--KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~--~~~~~~~~~ 294 (298)
|||+|||+.+++.+.+.|++++++.|.|+|++|||++.+.. ||++++|++|++++.++++++... .....+.|.
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 233 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADGAAAELRGALGGADLEAAFL 233 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeCCHHHHHHHcCcccHHHHHH
Confidence 99999999999999999999975458999999999999975 999999999999999998877543 133445554
No 95
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-54 Score=422.39 Aligned_cols=237 Identities=37% Similarity=0.565 Sum_probs=209.5
Q ss_pred CCCeEEEEeEEEEeCC------C----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC-
Q 022337 60 QKPKFRVRELRKESDD------G----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI- 128 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~------~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i- 128 (298)
..|.++++||+++|.. + ..+++||||++.+||++||||+||||||||.|+|+|+++|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 5678999999999963 1 2689999999999999999999999999999999999999999999999872
Q ss_pred -CCCCHHHHhcceEEEeCCCC--CCc-ccHHHHhHhCccccCC---CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH
Q 022337 129 -TDLDVLSLRRKVGMLFQIPA--LFE-GTVVDNIRYGPQLRGK---KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ 201 (298)
Q Consensus 129 -~~~~~~~~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ 201 (298)
........|+++-++||||. |.| .||.++|..++..+.. ...++++.+++++++++..+.+++|++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 21223456788999999995 556 4999999987664432 2234568999999999877899999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
||+|||||+.+|++|++|||||+||+..+..+.++|+++.++.|.|.|+||||++.+..+||||+||++|+|++.|+.++
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhc-cCChHHHHHhhh
Q 022337 282 LSE-AKHPMALRFLQL 296 (298)
Q Consensus 282 ~~~-~~~~~~~~~~~~ 296 (298)
+.+ +.|+|.+.+...
T Consensus 517 v~~~p~h~Ytr~L~~a 532 (539)
T COG1123 517 VFENPQHPYTRKLLAA 532 (539)
T ss_pred HhcCCCChHHHHHHHh
Confidence 765 478898888764
No 96
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-54 Score=389.99 Aligned_cols=222 Identities=27% Similarity=0.520 Sum_probs=194.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ 139 (298)
+++++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +..
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 3 QPLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred CceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 35799999999995 5689999999999999999999999999999999999999999999999999876654443 456
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccc----------cC----C-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQL----------RG----K-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ 201 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~----------~~----~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ 201 (298)
++|+||++.+|+. |+.||+.++... .. . . ...+++.++++.+|+. +..++++.+|||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQR 160 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHHH
Confidence 9999999999885 999999975321 00 0 0 1124577889999996 5789999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
|++|||||+.+|++|||||||+|||+.+++.+.+.|.+++++.|+|||++||+++.+..+||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999999976558999999999999999999999999999999999887
Q ss_pred hhc
Q 022337 282 LSE 284 (298)
Q Consensus 282 ~~~ 284 (298)
+.+
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 754
No 97
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-54 Score=391.57 Aligned_cols=220 Identities=34% Similarity=0.474 Sum_probs=194.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 689999999995 5679999999999999999999999999999999999999999999999999876666566778999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc------CCC
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA------NEP 213 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~------~~p 213 (298)
+||++.+++ .|++||+.++...... ....+++.++++.+++. +..++++.+|||||||||+|||||+ .+|
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p 159 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP 159 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 999998754 6999999886432221 11234578899999996 5789999999999999999999999 599
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||++||+.+++.+.+.|+++.++.|.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 99999999999999999999999999974458999999999999999999999999999999998877643
No 98
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=4.1e-54 Score=388.68 Aligned_cols=219 Identities=37% Similarity=0.557 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC--------HH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD--------VL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~--------~~ 134 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 699999999995 567999999999999999999999999999999999999999999999999886431 23
Q ss_pred HHhcceEEEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.+++.++|+||++.+++ .|+.||+.++.. ..+.. ...+++.++++.+++. ...++++.+|||||||||+|||||+
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~ 160 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALA 160 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHh
Confidence 45678999999998887 599999987532 11211 1234577889999996 5678999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.+++.+.+.|.++.++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 161 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 161 MRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998754 8999999999999999999999999999999999988754
No 99
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-54 Score=389.07 Aligned_cols=231 Identities=40% Similarity=0.617 Sum_probs=197.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~~~ 133 (298)
+++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.. .+.
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 45899999999995 56799999999999999999999999999999999999997 49999999998753 233
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+. . ..++++.++++.+++. .+..++++.+|||||||||+|||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 4567789999999988878999999986533221 1 1235577888888873 13568889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AK 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~ 286 (298)
||+.+|++|||||||+|||+.++..+++.|++++ + +.|+|++|||++.+..+|||+++|++|++++.|+++++.. +.
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 241 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPK 241 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 9999999999999999999999999999999995 3 7899999999999999999999999999999999988753 34
Q ss_pred ChHHHHHh
Q 022337 287 HPMALRFL 294 (298)
Q Consensus 287 ~~~~~~~~ 294 (298)
+.+...|+
T Consensus 242 ~~~~~~~~ 249 (254)
T PRK14273 242 NTKTEEYI 249 (254)
T ss_pred ChHHHHhh
Confidence 55555444
No 100
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.4e-54 Score=401.18 Aligned_cols=217 Identities=33% Similarity=0.528 Sum_probs=195.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++++|++++|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .....++++||
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 489999999995 5679999999999999999999999999999999999999999999999999865 33456788999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+++. |+.||+.+....++.. ...+++.++++.+|+. +..++++.+||||||||++|||||+++|++||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999875 9999998765443322 1235688899999997 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||+|||+.+++.+++.|+++++ ++|||++||+++++.++||||++|++|+++..|+++++..
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999853 7999999999999999999999999999999999988743
No 101
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.2e-54 Score=383.10 Aligned_cols=211 Identities=32% Similarity=0.461 Sum_probs=185.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~~~ 139 (298)
|++++|+++.|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 488999999994346799999999999999999999999999999999999999999999999998765432 35678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++|+||++.+++ .|+.||+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVL 159 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999998765 599999998643332221 234577899999996 5678999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
||||||++||+.+++.+.+.|++++++ +.|+|++|||++++..+||++++|++|+++.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 160 LADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999998754 8999999999999999999999999999863
No 102
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=6.1e-54 Score=439.55 Aligned_cols=215 Identities=30% Similarity=0.468 Sum_probs=193.7
Q ss_pred CeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|++ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|++|
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 35999999999974 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|||||++.+|++|++|||.++.. ..+++++.++++.+++++. ...+.+..||||||||++|||||+
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~~~----~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall 631 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLWDP----TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631 (710)
T ss_pred eEEecCChhhhccHHHHhhCCCC----CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987631 2456778888888887532 223456789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|++||||||||+||+.+++.+++.|++ .++|+|+|||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 632 ~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 632 RNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeCCEEEEecCHHHHHHc
Confidence 99999999999999999999999999975 27999999999998865 999999999999999999998764
No 103
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-54 Score=388.55 Aligned_cols=222 Identities=40% Similarity=0.646 Sum_probs=193.3
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
.+|+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+
T Consensus 3 ~~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 3 SPPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred CCcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 357899999999995 5679999999999999999999999999999999999975 689999999999854 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ ...++++.+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 161 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 34567789999999988888999999886432222 1 12356788899999842 246788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||+.+|++|||||||+|||+.++..+.+.|+++. + ++|||++|||++.+.++||++++|++|++++.|+++++..
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14242 162 RALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFT 237 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999985 3 7899999999999999999999999999999999988754
No 104
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-54 Score=395.03 Aligned_cols=221 Identities=33% Similarity=0.529 Sum_probs=195.5
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+++++++||+++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 357999999999953 3569999999999999999999999999999999999999999999999999977666666788
Q ss_pred eEEEeCCCC-C-CcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA-L-FEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~-l-~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||+||++. + +..|+.||+.++....+... ..+++.++++.+|+. ++.++++.+||||||||++|||||+.+|++
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999983 4 45699999998643332221 235688899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|||||||+|||+.++..+++.|++++++.|.|||++|||++.+. .|||+++|++|++++.|+++++.
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999998756899999999999997 59999999999999999987754
No 105
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.7e-54 Score=402.39 Aligned_cols=210 Identities=31% Similarity=0.537 Sum_probs=187.2
Q ss_pred EEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCC
Q 022337 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF 150 (298)
Q Consensus 71 ~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~ 150 (298)
|+|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. ....+++++||+||++.++
T Consensus 1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 3563 5679999999999999999999999999999999999999999999999999865 3345677899999999988
Q ss_pred cc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCH
Q 022337 151 EG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227 (298)
Q Consensus 151 ~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~ 227 (298)
+. |++||+.+....++.. ...+++.++++.+++. +..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 75 9999998764433322 1235688899999996 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+++.+++.|++++++ |+|||++||+++++.++||+|++|++|+++..|+++++..
T Consensus 158 ~~~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 158 RTRRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999765 8999999999999999999999999999999999887643
No 106
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-54 Score=387.38 Aligned_cols=230 Identities=37% Similarity=0.574 Sum_probs=198.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE---PPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~---p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+...+++.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 589999999995 5679999999999999999999999999999999999984 799999999999977665667788
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCC----CccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGK----KLTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
++|+||++.+|+.|++||+.++....+. ...++++.++++.+++.+ +..++++.+||||||||++|||||+.+
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999999988999999876433221 112345778999999952 346788999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMAL 291 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~ 291 (298)
|+++||||||+|||+.++..+.+.|+++.+ ++|+|++||+++.+..+||++++|++|++++.|+++++... .++...
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 238 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTK 238 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCCcHHHH
Confidence 999999999999999999999999999853 89999999999999999999999999999999999887542 334445
Q ss_pred HHhh
Q 022337 292 RFLQ 295 (298)
Q Consensus 292 ~~~~ 295 (298)
.|.+
T Consensus 239 ~~~~ 242 (246)
T PRK14269 239 AYLS 242 (246)
T ss_pred HHhh
Confidence 4443
No 107
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-54 Score=413.41 Aligned_cols=216 Identities=34% Similarity=0.555 Sum_probs=199.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..|+++||+++|++++++|+++||+|++||.+||+|+|||||||++|+|.++++ ++|+|++||+++++.+.+.+|+.||
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 349999999999766679999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|||||..||+.||..||.+|.. ....+++.++++++++++. ...+++..|||||||||+||||+++
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~----sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNP----SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred EeCCcccccchhHHHHhhcCCC----CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 9999999999999999999842 4567899999999999642 2445677899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|+|+++|||||+||.++++++++.+.+... |+|+|+|-||++.+.+ ||+|+++++|++.+.|+.+++..+
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~~i~~~~~--~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~gth~ell~~ 575 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILDMIMDVMS--GRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEYGTHSELLAP 575 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHHHHHHhcC--CCeEEEEEecchhHhc-CCEEEEEECCeeEEeccHHHHhhh
Confidence 9999999999999999999999999998543 8999999999999975 899999999999999999998773
No 108
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-54 Score=387.37 Aligned_cols=230 Identities=43% Similarity=0.658 Sum_probs=197.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCCCHHHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~~~~~~ 136 (298)
++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+...+
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 2 NKIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred ceEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4699999999995 46799999999999999999999999999999999999984 79999999999876666667
Q ss_pred hcceEEEeCCCCCCc-ccHHHHhHhCccccCC----CccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 137 RRKVGMLFQIPALFE-GTVVDNIRYGPQLRGK----KLTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
++.+||+||++.+++ .|+.||+.++...... ....+++.++++.+++.+ +..++++.+|||||||||+||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 788999999998765 5999999876432211 112356788999999852 34688899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||+|||+.++..+.+.|+++. + +.|+|++|||++.+..+||++++|++|++++.|+++++... .+
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 238 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRH 238 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCCcc
Confidence 999999999999999999999999999999985 3 79999999999999999999999999999999999887543 33
Q ss_pred hHHHHHh
Q 022337 288 PMALRFL 294 (298)
Q Consensus 288 ~~~~~~~ 294 (298)
...+.|.
T Consensus 239 ~~~~~~~ 245 (250)
T PRK14247 239 ELTEKYV 245 (250)
T ss_pred HHHHHHh
Confidence 4444443
No 109
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.2e-54 Score=381.41 Aligned_cols=208 Identities=34% Similarity=0.542 Sum_probs=183.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---LSLRRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~~~~~~i 140 (298)
++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 4789999999544579999999999999999999999999999999999999999999999999876543 2356789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+|+||++.+|+. |++||+.++....+.. ...+++.++++.++++ +..++++.+||||||||++|||||+.+|+++|
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999998884 9999998864332221 1234678899999996 57889999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||||++||+.+++.+.+.|+++.++ |.|+|++|||++.+..+||++++|++|++
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999998654 89999999999999999999999999974
No 110
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.2e-53 Score=426.06 Aligned_cols=218 Identities=29% Similarity=0.561 Sum_probs=198.3
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+.++++|++|+|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|++||.++.+++...+|++|
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 469999999999653 4799999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcC----------CCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK----------TGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkQRv~iAral~ 210 (298)
+||||++.+|+.|++||+.++.. ..+++++.++++.+++++ +.++ .+..||||||||++||||++
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~~~----~~~~~~i~~al~~~~l~~-~i~~p~GldT~vge~g~~LSgGqrqRialARall 491 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLAAP----NASDEALIEVLQQVGLEK-LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491 (574)
T ss_pred eEEcccchhhcccHHHHhhcCCC----ccCHHHHHHHHHHcCCHH-HHcCccccCchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998742 245678899999999863 4433 56789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH 287 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~ 287 (298)
++|++||||||||+||+.+++.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+...
T Consensus 492 ~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~g 565 (574)
T PRK11160 492 HDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRLTGLEQ-FDRICVMDNGQIIEQGTHQELLAQQG 565 (574)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecChhHHHh-CCEEEEEeCCeEEEeCCHHHHHhcCc
Confidence 99999999999999999999999999999853 8999999999999864 99999999999999999999876433
No 111
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-54 Score=388.62 Aligned_cols=232 Identities=40% Similarity=0.641 Sum_probs=197.8
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCCC--
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDLD-- 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~~-- 132 (298)
..++++++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...+
T Consensus 9 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 9 AQPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred cceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 456899999999995 56799999999999999999999999999999999999985 8999999999885432
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
...+++.++|+||++.+|+.|++||+.++....+... ..+++.++++.+++. .+..++++.+|||||||||+|||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 167 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIAR 167 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHH
Confidence 2345678999999998888899999998643322221 124577889999884 23568889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-C
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-K 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~ 286 (298)
||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++|||++++.++|||+++|++|++++.|+++++.+. .
T Consensus 168 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 245 (258)
T PRK14268 168 TLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPR 245 (258)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 99999999999999999999999999999999853 79999999999999999999999999999999999887543 3
Q ss_pred ChHHHHHh
Q 022337 287 HPMALRFL 294 (298)
Q Consensus 287 ~~~~~~~~ 294 (298)
+.+.+.|.
T Consensus 246 ~~~~~~~~ 253 (258)
T PRK14268 246 EKSTEDYI 253 (258)
T ss_pred CHHHHHHh
Confidence 44444443
No 112
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-54 Score=393.14 Aligned_cols=219 Identities=30% Similarity=0.498 Sum_probs=191.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT--DLDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~--~~~~~~~~~~i 140 (298)
||+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+++.+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 589999999995 567999999999999999999999999999999999999999999999999984 22334567789
Q ss_pred EEEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++. ++..++.+|+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|++|
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999986 344589999987543222221 234577899999996 5788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.++..+.+.|++++++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999998754 8999999999999999999999999999999999877643
No 113
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-54 Score=380.67 Aligned_cols=208 Identities=30% Similarity=0.542 Sum_probs=185.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++.++|+
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEe
Confidence 47899999995 457999999999999 99999999999999999999999999999999999887654 5567889999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+. |+.||+.+.....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 156 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998875 9999998754332221 1235678899999996 56789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+.+.|+++++ +.|||++|||++.+..+|||+++|++|++++.|
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999865 589999999999999999999999999998654
No 114
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-54 Score=389.15 Aligned_cols=209 Identities=32% Similarity=0.505 Sum_probs=188.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. .+++.+
T Consensus 10 ~~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 10 GTPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CCcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 46799999999995 568999999999999999999999999999999999999999999999998753 346789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|+||++.+|+ .|++||+.++.. ...++++.++++.+++. +..++++.+||||||||++|||||+.+|++||||
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD 158 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLK----GQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLD 158 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhccc----chHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999888 599999988632 11245688899999996 5788999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~ 280 (298)
|||+|||+.+++.+.+.|+++.++.|+|||++|||++.+..+||++++|++|++++.++.+
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 159 EPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999986655899999999999999999999999999999887654
No 115
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=7.9e-54 Score=391.24 Aligned_cols=233 Identities=25% Similarity=0.397 Sum_probs=197.2
Q ss_pred CCeEEEEeEEEEeCC--------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q 022337 61 KPKFRVRELRKESDD--------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~--------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~ 132 (298)
+++|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 458999999999952 246999999999999999999999999999999999999999999999999986544
Q ss_pred HHHHhcceEEEeCCCC--CCcc-cHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPA--LFEG-TVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~--l~~~-tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
....++.++|+||++. +++. |+.+|+.+..... ... ...+++.++++.+++.....++++.+|||||||||+||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 4444567999999985 4554 9999998753321 111 12356788999999953567888999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||++||+.+++.+.+.|.+++++.|.|||++||+++.+..+||++++|++|++++.|+++++...
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 241 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCC
Confidence 9999999999999999999999999999999999765589999999999999999999999999999999998887543
Q ss_pred CChHHHHH
Q 022337 286 KHPMALRF 293 (298)
Q Consensus 286 ~~~~~~~~ 293 (298)
.+.....+
T Consensus 242 ~~~~~~~~ 249 (267)
T PRK15112 242 LHELTKRL 249 (267)
T ss_pred CCHHHHHH
Confidence 33444433
No 116
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=5.3e-54 Score=381.01 Aligned_cols=210 Identities=33% Similarity=0.573 Sum_probs=183.1
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---H
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS---L 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~---~ 136 (298)
+++++|+++.|+++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... +
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 37899999999532 46999999999999999999999999999999999999999999999999987655432 2
Q ss_pred h-cceEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 R-RKVGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~-~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+ +.++|+||++.+++ .|++||+.++....... ...+++.++++.++++ +..++++.+|||||||||+|||||+.+
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 3 67999999998887 59999998754322211 1234678899999996 578899999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
|++|||||||+|||+.+++.+.+.|++++++.|+|||++|||++.+.. ||++++|++|+++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999976558999999999999865 8999999999975
No 117
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-54 Score=393.90 Aligned_cols=228 Identities=36% Similarity=0.604 Sum_probs=196.6
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----hcce
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL----RRKV 140 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~----~~~i 140 (298)
.++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5678999994 5689999999999999999999999999999999999999999999999999876543322 3579
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+|+||++.+|+ .|+.||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999886 59999998864322221 1235678899999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||+|||+.+++.+.+.|.+++++.|+|||++|||++.+..+||++++|++|++++.|+++++.+. .+.+.+.|.
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 261 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFF 261 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHHHHHH
Confidence 99999999999999999999999765589999999999999999999999999999999999887543 334444444
No 118
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-54 Score=390.94 Aligned_cols=222 Identities=32% Similarity=0.449 Sum_probs=197.0
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..+|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 5 ~~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 45799999999995 56799999999999999999999999999999999999999999999999998766666667789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCcccc-----CC-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLR-----GK-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+|+||++.+++ .|++||+.++.... .. ....+++.++++.+++. +..++++.+||||||||++|||||+.+|
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p 162 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQET 162 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhcCC
Confidence 99999998876 59999998753111 01 11234678899999996 5789999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||+|||+.+++.+.+.|.+++++.|.|||++|||++.+.++||++++|++|++++.|+++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 163 AIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999976558999999999999999999999999999999999887643
No 119
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5.5e-54 Score=383.34 Aligned_cols=217 Identities=32% Similarity=0.514 Sum_probs=190.5
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-HhcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ig~ 142 (298)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 47899999995 568999999999999999999999999999999999999999999999999987665443 3567999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcC-CCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLAD-LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+||++.+|+. |+.||+.++....+.. ..+...++++.++ +. +..++++.+||||||||++|||||+.+|+++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRR-SRKIPDEIYELFPVLK-EMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcc-hHHHHHHHHHHHHhHH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999998885 9999998764322211 2234567777776 44 46789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||+|||+.+++.+.+.|.+++++.|+|+|++||+++.+..+||+++++++|++++.|+++++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 999999999999999999987655899999999999999999999999999999999988773
No 120
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.3e-53 Score=436.95 Aligned_cols=217 Identities=32% Similarity=0.533 Sum_probs=195.2
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++||+|+|++++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++.+++..++|++||
T Consensus 472 ~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 472 GDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred CcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 35999999999975668999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
||+|++.+|++|++|||.++.. ...+++++.++++.+++++. .....+..||||||||++|||||++
T Consensus 552 ~v~Q~~~lf~gTI~eNi~l~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 552 YLPQEPYIFSGSILENLLLGAK---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred EEecCceehhHHHHHHHhccCC---CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999998732 12356778888888877421 2334567899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|++||||||||+||+.+++.+++.|+++ + |+|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~--~~T~IiitHr~~~~~-~~D~i~~l~~G~i~~~G~~~~L~~~ 698 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNL-Q--DKTIIFVAHRLSVAK-QSDKIIVLDHGKIIEQGSHDELLDR 698 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHh-c--CCEEEEEecchHHHH-cCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999875 2 789999999999885 6999999999999999999998764
No 121
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-54 Score=392.41 Aligned_cols=219 Identities=35% Similarity=0.543 Sum_probs=192.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHHhcceE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-VLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-~~~~~~~ig 141 (298)
|++++|++++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++...+ ...+++.+|
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 5889999999954567999999999999999999999999999999999999999999999999986654 345677899
Q ss_pred EEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 142 MLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 142 ~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|+||++. ++..|+.||+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|++||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLI 159 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999985 445799999988653322221 235578889999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|||+.++..+++.|++++++ |.|||++|||++.+. .|||+++|++|++++.|+++++..
T Consensus 160 LDEPt~gLD~~~~~~l~~~l~~l~~~-g~til~~tH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 160 FDEVTSMLDPDSGIAVLERIKKLHEK-GKTIVYITHNLEELH-DADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHh-hCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999998754 899999999999985 699999999999999999887643
No 122
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-54 Score=384.76 Aligned_cols=227 Identities=34% Similarity=0.490 Sum_probs=194.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC------CCHHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD------LDVLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~------~~~~~~ 136 (298)
+++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .....+
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 589999999995 5689999999999999999999999999999999999999999999999998731 122345
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCc-cccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
++.++|+||++.+|+. |+.||+.+.. ...+.. ...+++.++++.+|++ ...++++.+||||||||++|||||+.+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~ 159 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 6789999999998874 9999997532 122211 1234578889999996 578999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~ 292 (298)
|+++||||||+|||+.+++.+.+.|+++.+ .|+|+|++|||++.+..+||++++|++|++++.|+++++..+.+.....
T Consensus 160 p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~ 238 (242)
T PRK11124 160 PQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQTEAFKN 238 (242)
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCcccHHHHH
Confidence 999999999999999999999999999865 4899999999999999999999999999999999988875443333333
No 123
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-55 Score=377.06 Aligned_cols=221 Identities=29% Similarity=0.516 Sum_probs=202.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~i 140 (298)
+++.++|+.|+|+ +++|++++||++++||++|++|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |..|
T Consensus 3 ~~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4689999999994 6789999999999999999999999999999999999999999999999999999887544 4569
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCC----ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKK----LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
||+||++.+|.. ||+|||...++.+..+ ..+++++++++.+++. ++.+++..+||||||+|+.|||||+.+|+.
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 999999999975 9999999877655432 1234577999999996 799999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+||||||||.||.+..++.++++.++.+ |..|+++.|+..+...+|||.+++.+|++.++|+|+++.++
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999764 99999999999999999999999999999999999998764
No 124
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=9.2e-54 Score=387.19 Aligned_cols=229 Identities=36% Similarity=0.560 Sum_probs=197.2
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-----------
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----------- 132 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----------- 132 (298)
++++||+++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999995 568999999999999999999999999999999999999999999999999886432
Q ss_pred --HHHHhcceEEEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 133 --VLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 --~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+ .|+.||+.++.. ..+.. ...+++.++++.++++ +..++.+.+||||||||++||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIA 158 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHH
Confidence 1345778999999999887 599999987532 11111 1234678899999996 578899999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||+|||+.++..+.+.|+++.++.|.|+|++|||++.+..+|||+++|++|++++.|+++++...
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T TIGR03005 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP 238 (252)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999999999999999999999998765589999999999999999999999999999999998887532
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.++....|.
T Consensus 239 ~~~~~~~~~ 247 (252)
T TIGR03005 239 KEERTREFL 247 (252)
T ss_pred CcHHHHHHH
Confidence 344544443
No 125
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-54 Score=393.92 Aligned_cols=221 Identities=38% Similarity=0.590 Sum_probs=192.3
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~ 134 (298)
.++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 38999999999642 3699999999999999999999999999999999999999999999999998643 234
Q ss_pred HHhcceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 135 SLRRKVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 135 ~~~~~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.+++.++|+||++ .+++.|++||+.++....+... ..+++.++++.+++.....++++.+||||||||++|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 5677899999997 4667799999987643222211 23456788999999634678899999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||++||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999764 8999999999999999999999999999999999877643
No 126
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-54 Score=384.93 Aligned_cols=220 Identities=25% Similarity=0.504 Sum_probs=194.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~i 140 (298)
.+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.+
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 2 ATLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred ceEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3799999999995 568999999999999999999999999999999999999999999999999987655433 46789
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccC-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++.+++ .|+.||+.+...... .. ..+.++.++++.+++. +..++++.+||||||||++|||||+.+|++|
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFI 159 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999887 499999987643221 11 1234578899999996 5778899999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||++||+.+++.+.+.+.++++ .|+|+|++||+++.+..+||++++|++|++++.++++++.+
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999865 48999999999999999999999999999999999888754
No 127
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-53 Score=389.61 Aligned_cols=232 Identities=38% Similarity=0.628 Sum_probs=198.1
Q ss_pred CCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--C
Q 022337 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--L 131 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~ 131 (298)
..+++|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.. .
T Consensus 15 ~~~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 15 ATEIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCCceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 4567899999999995 56799999999999999999999999999999999999975 89999999999864 2
Q ss_pred CHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC--C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHH
Q 022337 132 DVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 132 ~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~ 204 (298)
+...+++.++|+||++.+|+.|+.||+.++...++. . ...+++.++++.+++.+ ...++++.+||||||||++
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 173 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC 173 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 334567789999999998878999999976432221 1 12345788999999953 2457889999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFT 251 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999854 6899999999999999999999999999999999888753
Q ss_pred -cCChHHHHH
Q 022337 285 -AKHPMALRF 293 (298)
Q Consensus 285 -~~~~~~~~~ 293 (298)
+.+.....|
T Consensus 252 ~~~~~~~~~~ 261 (267)
T PRK14235 252 NPDDPRTQDY 261 (267)
T ss_pred CCCCHHHHHH
Confidence 234444433
No 128
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-53 Score=386.65 Aligned_cols=230 Identities=40% Similarity=0.615 Sum_probs=196.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCC--CCCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDIT--DLDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~--~~~~~ 134 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++. ..+..
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4799999999995 56799999999999999999999999999999999999987 4999999999986 33444
Q ss_pred HHhcceEEEeCCCCCCcc-cHHHHhHhCccccCC--C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
.++++++|+||++.+|+. |+.||+.++....+. . ...+++.++++.+++.. ...++++.+||||||||++||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 567789999999998875 999999876432221 1 12345778899998742 346788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||+|||+.+++.+.+.|+++.+ ++|||++|||++.+..+||++++|++|++++.|+++++.+.
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999864 68999999999999999999999999999999999887543
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.+++...|.
T Consensus 240 ~~~~~~~~~ 248 (253)
T PRK14267 240 EHELTEKYV 248 (253)
T ss_pred CcHHHHHHh
Confidence 334544443
No 129
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-53 Score=387.76 Aligned_cols=219 Identities=33% Similarity=0.512 Sum_probs=194.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 689999999995 5679999999999999999999999999999999999999999999999998876665566778999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcc----ccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQ----LRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~----~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||++.+++. |+.||+.++.. ..+. ....+++.++++.+++. ++.++++.+||||||||++|||||+.+|++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 159 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPV 159 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999988865 99999998632 1111 11234678899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+.+.|+++.++ |+|+|++|||++.+.++||++++|++|+++..|+++++..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999998654 8999999999999999999999999999999998887643
No 130
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1e-53 Score=384.33 Aligned_cols=219 Identities=27% Similarity=0.448 Sum_probs=193.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~i 140 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... .++.+
T Consensus 1 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3689999999995 467999999999999999999999999999999999999999999999999887655443 34579
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcccc--------CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+|+||++.+|+. |++||+.++.... +. ...++++.++++.+++. +..++++.+|||||||||+|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999985 9999998753211 01 11235678899999996 577899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+|++|||||||+|||+.+++.+++.|+++.+ ++|||++||+++.+.++||++++|++|++++.++++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999864 6899999999999999999999999999999999888754
No 131
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.6e-53 Score=386.78 Aligned_cols=222 Identities=36% Similarity=0.535 Sum_probs=193.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC---------
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL--------- 131 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~--------- 131 (298)
+++++++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 3 ENKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred CccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 45799999999995 56799999999999999999999999999999999999999999999999987531
Q ss_pred ----CHHHHhcceEEEeCCCCCCcc-cHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH
Q 022337 132 ----DVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 132 ----~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv 203 (298)
....+++.++|+||++.+++. |++||+.++.. ..... ...+++.++++.+|+.....++++.+||||||||+
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv 161 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRV 161 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHH
Confidence 123456789999999999874 99999987531 11211 12456788999999964334788999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|||||+.+|++|||||||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+|||+++|++|++++.|+++++.
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 162 SIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 9999999999999999999999999999999999999754 899999999999999999999999999999999988875
Q ss_pred c
Q 022337 284 E 284 (298)
Q Consensus 284 ~ 284 (298)
.
T Consensus 241 ~ 241 (257)
T PRK10619 241 G 241 (257)
T ss_pred h
Confidence 3
No 132
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-53 Score=391.83 Aligned_cols=220 Identities=36% Similarity=0.629 Sum_probs=193.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~--~~~~~~~~~i 140 (298)
+++++|++++|++++.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++.|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 58899999999644579999999999999999999999999999999999999999999999999842 2233567889
Q ss_pred EEEeCCCC--CCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 141 GMLFQIPA--LFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 141 g~v~Q~~~--l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|+||++. +++.|+.||+.++....+.. ...+++.++++.+++. ++.++++.+|||||+||++|||||+.+|++|
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 159 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEII 159 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999973 56679999998764222221 1235678899999996 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.++..+++.|.++.++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 160 llDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 160 VLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999764 8999999999999999999999999999999999887643
No 133
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.7e-54 Score=378.78 Aligned_cols=206 Identities=42% Similarity=0.684 Sum_probs=181.3
Q ss_pred EEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 65 RVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 65 ~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
+++|++++|+++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999532 5799999999999999999999999999999999999999999999999998766555667889999
Q ss_pred eCCCC--CCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPA--LFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~--l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||++. +++.|+.||+.++....+.. ...+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 159 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99984 44569999998754322211 1234678899999996 5788999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
|||+|||+.+++.+.+.|.+++++ |.|||++|||++++..+||++++|++|+
T Consensus 160 EPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 160 EPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999765 8999999999999999999999999985
No 134
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.1e-53 Score=380.87 Aligned_cols=213 Identities=36% Similarity=0.547 Sum_probs=186.0
Q ss_pred CeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---
Q 022337 62 PKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS--- 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~--- 135 (298)
++++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 579999999999642 25999999999999999999999999999999999999999999999999987665432
Q ss_pred H-hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 136 L-RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 136 ~-~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
. +++++|+||++.+++. |+.||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 2 3579999999998875 9999998754322211 2245688899999996 57789999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
+|++|||||||+|||+.+++.+.+.|++++++.|.|||++|||++.+. .||++++|++|++++.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQEE 227 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence 999999999999999999999999999997655899999999999885 5999999999999753
No 135
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-54 Score=378.92 Aligned_cols=207 Identities=30% Similarity=0.559 Sum_probs=183.9
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEe
Confidence 47899999995 5679999999999999999999999999999999999999999999999987642 356789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+++. |++||+.+....++.. ...+++.++++.++++ +..++++.+||||||||++|||||+.+|+++||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDE 154 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999998875 9999998754332221 2245678899999996 57888999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.|
T Consensus 155 P~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 155 PFSGLDPVNVELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999998764 899999999999999999999999999998653
No 136
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.8e-54 Score=382.20 Aligned_cols=217 Identities=32% Similarity=0.473 Sum_probs=189.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 5 ~~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 45899999999995 56799999999999999999999999999999999999999999999999998776666677889
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+|+||++.+|+.|++||+.+...........+++.++++.+++.+...++++.+|||||+||++|||||+.+|+++||||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDE 163 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999888899999987543322222345677899999995346789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe-CCEEEEeeCh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVEVLKP 279 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~-~G~i~~~g~~ 279 (298)
||+|||+.+++.+.+.|.++.++.|.|||++|||++.+. .||++++|+ ++..+++|+.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 164 ITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhhh
Confidence 999999999999999999987655899999999999986 699999995 5555555543
No 137
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-53 Score=393.88 Aligned_cols=222 Identities=30% Similarity=0.505 Sum_probs=192.1
Q ss_pred CeEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC----C-C
Q 022337 62 PKFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----L-D 132 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~----~-~ 132 (298)
..++++|++++|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 469999999999543 249999999999999999999999999999999999999999999999998742 1 2
Q ss_pred HHHHhcceEEEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
...+++.++|++|++. +++.|++||+.++....+... ..+++.++++.+++...+.++++.+||||||||++||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 3456778999999973 556799999998643222211 124567889999995357889999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|+.+|++|||||||+|||+.+++.+++.|+++.++.|+|||++|||++.+.++||++++|++|++++.|+++++.
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999987655899999999999999999999999999999999887753
No 138
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-53 Score=390.62 Aligned_cols=222 Identities=31% Similarity=0.536 Sum_probs=194.2
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.++++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 468999999999952 4579999999999999999999999999999999999999999999999999876555567888
Q ss_pred eEEEeCCCC-CC-cccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA-LF-EGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~-l~-~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|+||++. .| ..|++||+.++....+... ..+++.++++.+++. ++.++++.+||||||||++|||||+.+|++
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999984 44 4699999988643222211 234578899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+++.|++++++.++|||++||+++.+. .||++++|++|++++.|+++++..
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999987654589999999999985 799999999999999998877643
No 139
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-53 Score=387.52 Aligned_cols=232 Identities=37% Similarity=0.613 Sum_probs=197.5
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
..++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 10 ~~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 456899999999995 5679999999999999999999999999999999999987 699999999998753 34
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
...+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++. .+..++++.+||||||||++||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara 168 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence 456677899999999988889999999875433221 1234567788888763 235688899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC-----------CEEEEee
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-----------GEIVEVL 277 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~-----------G~i~~~g 277 (298)
|+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++.+..+||++++|++ |++++.|
T Consensus 169 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~ 246 (269)
T PRK14259 169 IAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFN 246 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeC
Confidence 9999999999999999999999999999999853 68999999999999999999999996 6789999
Q ss_pred Chhhhhc-cCChHHHHHh
Q 022337 278 KPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 278 ~~~~~~~-~~~~~~~~~~ 294 (298)
+++++.. +.+++...|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~ 264 (269)
T PRK14259 247 ETKKIFNSPKQKATQDYI 264 (269)
T ss_pred CHHHHHhCcCChHHHHHH
Confidence 9988754 3445544443
No 140
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=3.5e-53 Score=433.00 Aligned_cols=216 Identities=38% Similarity=0.565 Sum_probs=195.1
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|+++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+++...+|+.+
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 459999999999643 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||+|++.+|++|++|||.++.. ..+++++.++++.+++.+. ...+.+..||||||||++|||||+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAP----YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCC----CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998732 2456788888888887531 223456789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|+++|||||||+||+.+++.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~~-~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLLD-LVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999864 799999999999885 699999999999999999998754
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-53 Score=391.44 Aligned_cols=221 Identities=32% Similarity=0.514 Sum_probs=194.6
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc---cEEEECCEeCCCCCHHHH
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS---GTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~---G~I~i~g~~i~~~~~~~~ 136 (298)
+.+++++|+++.|++. +++|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|+++...+...+
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 4589999999999632 469999999999999999999999999999999999999998 899999999876655566
Q ss_pred hcceEEEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 RRKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~~~ig~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
++++||+||++. +++.|+.||+.++....+... ..+++.++++.+++. ++.++++.+|||||+||++|||||+.+
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 788999999984 345699999988643332221 234578899999996 578999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|++|||||||+|||+.+++.+.+.|++++++.|+|||++||+++.+. +|||+++|++|++++.|+++++.
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999997655899999999999985 79999999999999999988764
No 142
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.8e-53 Score=405.70 Aligned_cols=225 Identities=33% Similarity=0.534 Sum_probs=193.3
Q ss_pred eEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE----eCCCCCHHH---Hh-cc
Q 022337 68 ELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR----DITDLDVLS---LR-RK 139 (298)
Q Consensus 68 ~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~----~i~~~~~~~---~~-~~ 139 (298)
++.++| +...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++...+... .| ++
T Consensus 29 ~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 344566 3567999999999999999999999999999999999999999999999997 454444332 23 57
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++|+||++.+|+ .|++||+.++....+.. ...+++.++++.+|+. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999998 59999999875443322 1235678899999997 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~ 294 (298)
||||||++||+.++..+.+.|.++.++.++|||+||||++++.++||||++|++|++++.|+++++.. +.+.+...|.
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 265 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV 265 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHHh
Confidence 99999999999999999999999977668999999999999999999999999999999999998854 2344555553
No 143
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.9e-53 Score=433.62 Aligned_cols=215 Identities=33% Similarity=0.550 Sum_probs=190.8
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++||+|+|++ ++++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+++...+|++
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 45999999999964 3479999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
|+||+|+|.+|+.|++|||.++.. ..+++++.++++.+++++. ..++.+.+||||||||++||||+
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLT----DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999998742 2346778888888887521 22334568999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+++|+|||||||||+||+.+++.+.+ .. . ..++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~~i~-~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRLSTVE-RADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccHHHHH-hCCEEEEEECCEEEEeeCHHHHHhC
Confidence 99999999999999999999999998 22 2 23799999999999885 5999999999999999999998764
No 144
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-54 Score=445.01 Aligned_cols=219 Identities=39% Similarity=0.634 Sum_probs=198.6
Q ss_pred CCeEEEEeEEEEeCCCC--cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGA--PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~--~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
...++++||+|+|+.+. ++|+|+||+|++|+++||||||||||||++++|.|+|+|++|+|++||.|++.++.+++|+
T Consensus 348 ~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~ 427 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRS 427 (1228)
T ss_pred ccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHh
Confidence 44699999999998654 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHH
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+||.|+|+|.||..|++|||.||.. +.+++++.++++..+..+ .+..+.+.+||||||||||||||
T Consensus 428 ~iglV~QePvlF~~tI~eNI~~G~~----dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARa 503 (1228)
T KOG0055|consen 428 QIGLVSQEPVLFATTIRENIRYGKP----DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARA 503 (1228)
T ss_pred hcCeeeechhhhcccHHHHHhcCCC----cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHH
Confidence 9999999999999999999999853 345677777777766532 23445667899999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
|+++|+|||||||||+||+.+++.+.+.|.+.++ |+|.|+|+|+++.+.+ ||+|++|++|+|+|.|+++|+....
T Consensus 504 lv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~ 578 (1228)
T KOG0055|consen 504 LVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALG 578 (1228)
T ss_pred HHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhcc
Confidence 9999999999999999999999999999999865 8999999999999976 9999999999999999999987643
No 145
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-53 Score=391.25 Aligned_cols=221 Identities=30% Similarity=0.528 Sum_probs=194.6
Q ss_pred CeEEEEeEEEEeCC-----CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHH
Q 022337 62 PKFRVRELRKESDD-----GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-VLS 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-----~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-~~~ 135 (298)
++++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 58999999999963 246999999999999999999999999999999999999999999999999986533 245
Q ss_pred HhcceEEEeCCCC--CCcccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 136 LRRKVGMLFQIPA--LFEGTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 136 ~~~~ig~v~Q~~~--l~~~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+++.+||+||++. ++..|+.+|+.|+....+.. ..++++.++++.+|+. ++.++++.+||||||||++|||||+.
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~ 161 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAM 161 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 6788999999984 55569999999875433322 1235678899999996 57899999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++.+.. ||++++|++|++++.|+++++..
T Consensus 162 ~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 162 RPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999976558999999999999976 99999999999999999888643
No 146
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-53 Score=374.88 Aligned_cols=208 Identities=36% Similarity=0.520 Sum_probs=183.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++. .|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .++.++|+
T Consensus 1 i~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYG-EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeC-CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEE
Confidence 47899999995 433 39999999999999999999999999999999999999999999999876543 35789999
Q ss_pred eCCCCCCcc-cHHHHhHhCcccc-CC-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLR-GK-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+. |++||+.++.... .. ...++++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998875 9999998764321 11 12345688899999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||++||+.++..+++.|++++++.|.|||++|||++.+..+|||+++|++|++++.|
T Consensus 155 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999997655899999999999999999999999999998653
No 147
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=9.5e-53 Score=422.45 Aligned_cols=217 Identities=33% Similarity=0.542 Sum_probs=193.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++|+|++++++|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|++||.++.+++...+|++|+
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975467999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|+||++.+|++|++||+.++.. ..+++++.++++.+++++ ......+..||||||||++|||||++
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~~----~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGRP----DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred EEecCcccccccHHHHHhcCCC----CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998731 234566777777777642 12334456799999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|+++|||||||+||+.+++.+++.|.++.+ ++|+|+||||++.+. .||+|++|++|++++.|+++++...
T Consensus 489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~~~~~-~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRLSTVR-NADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecHHHHH-hCCEEEEEECCEEEEeCCHHHHHHC
Confidence 9999999999999999999999999998753 799999999999875 6999999999999999999888654
No 148
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-54 Score=410.41 Aligned_cols=223 Identities=33% Similarity=0.547 Sum_probs=202.4
Q ss_pred eEEEEeEEEEeCCCC-cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~-~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++++||+|+|+++. ++|+|+||++++||.+||+|+||||||||+.+|.|.++|++|+|.++|.++..++.+.+|+.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 699999999998665 6999999999999999999999999999999999999999999999999999998888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+++|.+++|..|+++|+.++. .+.+++++.++++.+|+++. ..+..+..||||||||++|||+|++
T Consensus 416 vl~Qr~hlF~~Tlr~NL~lA~----~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~ 491 (573)
T COG4987 416 VLTQRVHLFSGTLRDNLRLAN----PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH 491 (573)
T ss_pred hhccchHHHHHHHHHHHhhcC----CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence 999999999999999999874 24578889999999998632 3445578999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
|.+++||||||.|||+.+++++++.|.+-.+ |+|+|||||++..++ .||||+||++|+++++|++.++..+ +..++
T Consensus 492 dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~le-~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~ 567 (573)
T COG4987 492 DAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGTHAELLAN-NGRYK 567 (573)
T ss_pred CCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccHh-hcCEEEEEECCeeeecCCHHhhhcc-ccHHH
Confidence 9999999999999999999999999998765 899999999999996 5899999999999999999999874 44444
Q ss_pred HH
Q 022337 292 RF 293 (298)
Q Consensus 292 ~~ 293 (298)
++
T Consensus 568 ~l 569 (573)
T COG4987 568 RL 569 (573)
T ss_pred HH
Confidence 43
No 149
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4e-53 Score=384.45 Aligned_cols=233 Identities=28% Similarity=0.411 Sum_probs=196.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe-----CCCCCHHH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD-----ITDLDVLS 135 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~-----i~~~~~~~ 135 (298)
.++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|++ +...+...
T Consensus 4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 4 QPLLSVRGLTKLYG-PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CceEEEeeeEEEcC-CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 35799999999995 4679999999999999999999999999999999999999999999999998 76554433
Q ss_pred ----HhcceEEEeCCCC--CCc-ccHHHHhHhCccccCC---CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 136 ----LRRKVGMLFQIPA--LFE-GTVVDNIRYGPQLRGK---KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 136 ----~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
.++.++|+||++. +++ .|+.+|+.+....... ....+++.++++.+++.....++.+.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 2457999999984 444 4899998764321111 11234577899999996336789999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE- 284 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~- 284 (298)
||||+.+|++|||||||++||+.+++.+.+.|+++.++.|.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 242 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDD 242 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999876558999999999999999999999999999999999988753
Q ss_pred cCChHHHHHh
Q 022337 285 AKHPMALRFL 294 (298)
Q Consensus 285 ~~~~~~~~~~ 294 (298)
+.+.+.+.|+
T Consensus 243 ~~~~~~~~~~ 252 (258)
T PRK11701 243 PQHPYTQLLV 252 (258)
T ss_pred CCCHHHHHHH
Confidence 2334444443
No 150
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-53 Score=385.14 Aligned_cols=221 Identities=41% Similarity=0.621 Sum_probs=193.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 133 (298)
.++++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+.
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999995 5579999999999999999999999999999999999986 589999999999853 334
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCcccc-CCCc--cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR-GKKL--TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~-~~~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..++++++|+||++.+|+.|++||+.++.... +... ..+++.++++.+++.. +..++++.+||||||||++|||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 45678899999999988889999998764322 1111 2356788999999741 3568889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++. + +.|||++||+++.+..+||++++|++|++++.|+++++..
T Consensus 170 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 170 GIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999985 3 7899999999999999999999999999999999988754
No 151
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.2e-54 Score=379.23 Aligned_cols=203 Identities=34% Similarity=0.572 Sum_probs=177.8
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF 144 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~ 144 (298)
+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .++++++|+|
T Consensus 1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 3689999995 467999999999999999999999999999999999999999999999998763 3567899999
Q ss_pred CCCCC---CcccHHHHhHhCccccC----C--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 145 QIPAL---FEGTVVDNIRYGPQLRG----K--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 145 Q~~~l---~~~tv~eni~~~~~~~~----~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
|++.+ ++.|++||+.++..... . ....+++.++++.++++ +..++++.+||||||||++|||||+.+|++
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~l 153 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDL 153 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99876 34699999998643211 1 11235678899999996 578899999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
|||||||+|||+.+++.+.+.|+++++ .|.|+|++|||++++.++||++++|++| +++.
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999976 4899999999999999999999999886 5443
No 152
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-53 Score=378.71 Aligned_cols=225 Identities=34% Similarity=0.488 Sum_probs=194.2
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ +.. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|
T Consensus 1 ~l~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 1 MLKLTDITWLYH-HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred CeEEEEEEEEEC-Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 588999999995 333 49999999999999999999999999999999999999999999998865433 2567999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcccc-C-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLR-G-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+|+. |+.||+.++.... . ....++++.++++.++++ +..++++.+||||||||++||||++.+|+++|||
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999998885 9999998763211 1 112345688899999996 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
|||+|||+.+++.+.+.|.++.++.|+|+|++|||++++..+||++++|++|++++.|+++++.... ...+.|.
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~-~~~~~~~ 228 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK-ASASALL 228 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh-hHHHHhh
Confidence 9999999999999999999987655899999999999999999999999999999999988876532 3444443
No 153
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-53 Score=384.45 Aligned_cols=231 Identities=35% Similarity=0.611 Sum_probs=196.5
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--P---PSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--p---~~G~I~i~g~~i~~--~~ 132 (298)
.+++++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+
T Consensus 9 ~~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 9 KQEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred CCceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 356899999999995 5679999999999999999999999999999999999997 3 69999999999853 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ +..++++.+||||||||++||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 34567789999999998888999999876433321 1 11345677889988842 346788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|+|++|||++.+.++|||+++|++|++++.|+++++...
T Consensus 168 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 245 (259)
T PRK14274 168 RALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNP 245 (259)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCC
Confidence 999999999999999999999999999999999853 68999999999999999999999999999999999987542
Q ss_pred CChHHHHH
Q 022337 286 KHPMALRF 293 (298)
Q Consensus 286 ~~~~~~~~ 293 (298)
.+.....|
T Consensus 246 ~~~~~~~~ 253 (259)
T PRK14274 246 DDQRTLDY 253 (259)
T ss_pred CCHHHHHh
Confidence 33444444
No 154
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-53 Score=385.29 Aligned_cols=210 Identities=31% Similarity=0.526 Sum_probs=186.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +..++|
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 589999999995 56799999999999999999999999999999999999999999999999987542 245899
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||++.+++ .|+.||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++||||
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 153 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD 153 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999887 59999998764322222 1235688899999996 5778999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe--CCEEEEeeCh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--NGEIVEVLKP 279 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~--~G~i~~~g~~ 279 (298)
|||+|||+.+++.+.+.|++++++.|+|||++|||++.+..+||++++|+ +|++++.++.
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999865458999999999999999999999998 5999988754
No 155
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4e-53 Score=385.24 Aligned_cols=219 Identities=29% Similarity=0.439 Sum_probs=193.1
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCC-----CH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDL-----DV 133 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~-----~~ 133 (298)
++|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++... ..
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999995 568999999999999999999999999999999999999986 49999999988542 22
Q ss_pred HHHhcceEEEeCCCCCCc-ccHHHHhHhCcccc--------CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH
Q 022337 134 LSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLR--------GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR 202 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~--------~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR 202 (298)
..+++.++|+||++.+|+ .|+.||+.++.... .. ...++++.++++.+++. +..++.+.+||||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr 160 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGGQQQR 160 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHHHHHH
Confidence 345678999999999887 49999998763210 00 11234678899999996 57899999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|+|||||+.+|++|||||||+|||+.+++.+.+.|++++++.|.|||++|||++.+..+||++++|++|++++.|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999999999999999999765589999999999999999999999999999999999886
No 156
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-53 Score=381.63 Aligned_cols=230 Identities=37% Similarity=0.585 Sum_probs=195.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC---CCC--CccEEEECCEeCCCCC--HH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL---WEP--PSGTVFLDGRDITDLD--VL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl---~~p--~~G~I~i~g~~i~~~~--~~ 134 (298)
++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+ ++| ++|+|.++|+++...+ ..
T Consensus 2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999995 56799999999999999999999999999999999997 455 5899999999986432 34
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|+||++.+|+.|+.||+.++....+.. ..++++.++++.+++.+ +..++++.+||||||||++||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 5677899999999988789999998764322211 12345778899999852 35678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||+|||+.+++.+.+.|+++. + ++|||++|||++.+..+|||+++|++|++++.|+++++.+. .+
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~~~ 238 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEK 238 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCCCC
Confidence 999999999999999999999999999999984 3 78999999999999999999999999999999999988543 33
Q ss_pred hHHHHHh
Q 022337 288 PMALRFL 294 (298)
Q Consensus 288 ~~~~~~~ 294 (298)
.....|+
T Consensus 239 ~~~~~~~ 245 (250)
T PRK14245 239 EATQNYI 245 (250)
T ss_pred hHHHHhh
Confidence 3444444
No 157
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-53 Score=386.99 Aligned_cols=222 Identities=30% Similarity=0.457 Sum_probs=195.3
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.++++++|++++|++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 4589999999999643 359999999999999999999999999999999999999999999999999876666677888
Q ss_pred eEEEeCCCC-CCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA-LFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~-l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|+||++. +++ .|+.+|+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSV 163 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999984 454 59999998874332221 1234677899999996 578899999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+.+.|++++++.|+|||++||+++.+.. |||+++|++|++++.|+++++..
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999876558999999999999975 99999999999999999887644
No 158
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.4e-53 Score=376.04 Aligned_cols=207 Identities=43% Similarity=0.665 Sum_probs=182.5
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhcceE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSLRRKVG 141 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~--~~~~~~~~~ig 141 (298)
++++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++.++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFG-DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEEC-CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 47899999995 4679999999999999999999999999999999999999999999999998853 23345678899
Q ss_pred EEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|+||++.+++ .|+.||+.++.. .++.. ...+++.++++.++++ +..++++.+||||||||++|||||+.+|++||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 158 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVML 158 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999887 599999987632 12221 1234678899999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||||+|||+.+++.+.+.|++++++ |+|||++|||++.+.++||++++|++|++
T Consensus 159 lDEP~~~LD~~~~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 159 FDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999764 89999999999999999999999999974
No 159
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-53 Score=439.08 Aligned_cols=281 Identities=31% Similarity=0.507 Sum_probs=233.9
Q ss_pred ccchhHHHHHHHHHHhHHHHHHHHHcccccchh--HHHHHHhhhccCCCCCccc-cc--cCCCCCeEEEEeEEEEeCCC-
Q 022337 3 LTFSPQFIVCGCINLLSVSQIEVIQKMPSTCSL--FRDEVREHLLTVPGEAEAE-DD--NQIQKPKFRVRELRKESDDG- 76 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~l~~~~l~~~y~~~- 76 (298)
|++.-.|-++.++..+.+...+..+..|..... ....++..++..+...... .. .+.-...++++||+|.|+.+
T Consensus 922 ~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP 1001 (1228)
T KOG0055|consen 922 MTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP 1001 (1228)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCC
Confidence 344455667777777888888888887777633 3344666555544221111 11 12223459999999999744
Q ss_pred -CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 -APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 -~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
.+||+|+||+|++|+.+||||||||||||.+.+|-++|+|++|.|.|||+|++++++..+|+++|.|.|+|.||..|++
T Consensus 1002 ~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIr 1081 (1228)
T KOG0055|consen 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIR 1081 (1228)
T ss_pred CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHH
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
|||.||.. ..+++++.++++..+.++ .....++.+||||||||+|||||+++||+||||||.||+|
T Consensus 1082 ENI~YG~~----~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSAL 1157 (1228)
T KOG0055|consen 1082 ENIAYGSE----EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSAL 1157 (1228)
T ss_pred HHHhccCC----CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhh
Confidence 99999921 246778888888887642 2355678899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
|.++++.+.+.|.+.+. |+|.|+|+|+++.+.+ ||.|+|+++|+|+|.|+++++..+...|.
T Consensus 1158 DseSErvVQeALd~a~~--gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~ 1219 (1228)
T KOG0055|consen 1158 DSESERVVQEALDRAME--GRTTIVIAHRLSTIQN-ADVIAVLKNGKVVEQGTHDELLAKRGIYF 1219 (1228)
T ss_pred hhhhHHHHHHHHHHhhc--CCcEEEEecchhhhhc-CCEEEEEECCEEEecccHHHHHhCCCchH
Confidence 99999999999999864 8999999999999965 99999999999999999999987544443
No 160
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-53 Score=384.46 Aligned_cols=230 Identities=35% Similarity=0.589 Sum_probs=195.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 133 (298)
+++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++... +.
T Consensus 19 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 19 EHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 45899999999995 5679999999999999999999999999999999999865 7999999999998542 23
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+.. ..++.+.++++.+++.. +..++++.+||||||||++|||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 34577899999999988889999998764322211 12345677888888742 3567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-C
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-K 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~ 286 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++.+..+|||+++|++|++++.|+++++... .
T Consensus 178 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 255 (268)
T PRK14248 178 TLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPK 255 (268)
T ss_pred HHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999999854 68999999999999999999999999999999999887543 3
Q ss_pred ChHHHHH
Q 022337 287 HPMALRF 293 (298)
Q Consensus 287 ~~~~~~~ 293 (298)
+.....|
T Consensus 256 ~~~~~~~ 262 (268)
T PRK14248 256 QQKTEDY 262 (268)
T ss_pred ChHHHHH
Confidence 3433333
No 161
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-53 Score=401.51 Aligned_cols=213 Identities=31% Similarity=0.527 Sum_probs=190.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHHHHhc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~~~~~ 138 (298)
||++ ||+++|+ ++ .+ |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... +....++
T Consensus 1 ~l~~-~l~k~~~-~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLG-DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeC-CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 5788 9999995 43 33 99999999999999999999999999999999999999999999987542 1234567
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+++|+||++.+|+. |++||+.++.. ....+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llL 151 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMA----KSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLL 151 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhh----hhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 89999999999984 99999998743 12346788999999996 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||++||+.+++.+++.|+++.++.|.|+|+||||++++..+||++++|++|++++.|+++++..
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999999999977668999999999999999999999999999999999988754
No 162
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.2e-53 Score=383.91 Aligned_cols=218 Identities=32% Similarity=0.446 Sum_probs=193.5
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999995 56899999999999999999999999999999999999999999999999998776666667789999
Q ss_pred eCCCCCCc-ccHHHHhHhCcc-c---cCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 144 FQIPALFE-GTVVDNIRYGPQ-L---RGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~-~---~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|++.++. .|+.||+.++.. . ... ....+++.++++.+++. ++.++++.+||||||||++|||||+.+|+++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 159 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLL 159 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99987654 699999987531 1 111 11234678899999996 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.++..+.+.|++++++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 160 LLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999998754 8999999999999999999999999999999999887643
No 163
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-53 Score=380.29 Aligned_cols=231 Identities=36% Similarity=0.609 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~~ 134 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+..
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4799999999995 5689999999999999999999999999999999999997 489999999998753 2234
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|++|++.+|+.|++||+.++....+... .++++.++++.+++. ....++++.+||||||||++||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara 161 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA 161 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence 55778999999999888899999987643222111 234577888999984 134678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~ 287 (298)
|+.+|+++||||||++||+.+++.+.+.|+++.+ +.|||++|||++.+.++||++++|++|++++.++++++.. +.+
T Consensus 162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 239 (251)
T PRK14251 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKK 239 (251)
T ss_pred HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence 9999999999999999999999999999999853 6899999999999999999999999999999999988753 344
Q ss_pred hHHHHHhh
Q 022337 288 PMALRFLQ 295 (298)
Q Consensus 288 ~~~~~~~~ 295 (298)
.+...|.+
T Consensus 240 ~~~~~~~~ 247 (251)
T PRK14251 240 QITSDYLN 247 (251)
T ss_pred HHHHHHHh
Confidence 45555543
No 164
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.1e-53 Score=380.97 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=188.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHH-hcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLSL-RRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-~~~i 140 (298)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++...+.... +..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999995 567999999999999999999999999999999999995 7999999999999876655443 3459
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccC-------CC--ccHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHHHHHH
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRG-------KK--LTENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVALARTL 209 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~-------~~--~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~iAral 209 (298)
+|+||++.+++. |+.||+.+...... .. ...+++.++++.+++.....++++. +||||||||++|||||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 999999998875 99999987532111 01 1134578899999996445677776 5999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||++||+.+++.+.+.|+++++ .|.|||++|||++.+..+ ||++++|++|++++.|+++++.
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999999999999999999999999999975 489999999999999988 8999999999999999887654
No 165
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-53 Score=380.48 Aligned_cols=230 Identities=40% Similarity=0.622 Sum_probs=196.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 2 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 46899999999995 56799999999999999999999999999999999999985 799999999998542 23
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
...++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ +..++++.+||||||||++|||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 3457789999999998888999999976433222 1 12345678899998741 3567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AK 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~ 286 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|+|++||+++.+..+|||+++|++|++++.|+++++.. +.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14270 161 TIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ 238 (251)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCCC
Confidence 99999999999999999999999999999999865 5899999999999999999999999999999999988754 33
Q ss_pred ChHHHHH
Q 022337 287 HPMALRF 293 (298)
Q Consensus 287 ~~~~~~~ 293 (298)
++....|
T Consensus 239 ~~~~~~~ 245 (251)
T PRK14270 239 KKETEDY 245 (251)
T ss_pred ChHHHHh
Confidence 4444444
No 166
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-53 Score=386.37 Aligned_cols=221 Identities=34% Similarity=0.513 Sum_probs=193.9
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++++++|++++|++. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 379999999999632 359999999999999999999999999999999999999999999999999876555567788
Q ss_pred eEEEeCCCC--CCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPA--LFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~--l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||+||++. ++..|+.||+.++....+... ..+++.++++.+++. .+.++++.+||||||||++|||||+.+|++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999984 445699999987643222211 134578899999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||++||+.+++.+++.|.+++++.|.|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999997655899999999999996 699999999999999999887643
No 167
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=8.2e-53 Score=384.84 Aligned_cols=233 Identities=30% Similarity=0.419 Sum_probs=199.6
Q ss_pred CeEEEEeEEEEeCC--------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH
Q 022337 62 PKFRVRELRKESDD--------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~ 133 (298)
++|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47999999999963 4679999999999999999999999999999999999999999999999998876543
Q ss_pred ---HHHhcceEEEeCCCC--CCc-ccHHHHhHhCccc-cCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 134 ---LSLRRKVGMLFQIPA--LFE-GTVVDNIRYGPQL-RGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 134 ---~~~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
..+++.++|+||++. +++ .|+.+|+.+.... .... ....++.++++.+++.....++++.+||||||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 235678999999983 455 5999998764321 1111 123467889999999634678999999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+.+|++|||||||++||+.+++.+.+.|++++++.|.|+|++||+++.+..+||++++|++|++++.|+++++..
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 99999999999999999999999999999999999976558999999999999999999999999999999999988765
Q ss_pred cCChHHHHHh
Q 022337 285 AKHPMALRFL 294 (298)
Q Consensus 285 ~~~~~~~~~~ 294 (298)
..+++...+.
T Consensus 242 ~~~~~~~~~~ 251 (268)
T PRK10419 242 FSSPAGRVLQ 251 (268)
T ss_pred CCCHHHHHHH
Confidence 5556655554
No 168
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-52 Score=378.88 Aligned_cols=221 Identities=38% Similarity=0.619 Sum_probs=190.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CC---CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EP---PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p---~~G~I~i~g~~i~~~--~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++... +.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 3 EPILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred CceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 35799999999995 567999999999999999999999999999999999995 46 599999999998532 22
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++.. +..++.+.+|||||||||+|||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 34567899999999988889999998764322221 12345677888888742 3567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ ++|||++|||++.+..+|||+++|++|++++.|+++++.+
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999854 6899999999999999999999999999999999988754
No 169
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.1e-52 Score=418.14 Aligned_cols=218 Identities=33% Similarity=0.529 Sum_probs=194.3
Q ss_pred CeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+++|++ ++++|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|++||.++.+++..++++++
T Consensus 329 ~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i 408 (571)
T TIGR02203 329 GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQV 408 (571)
T ss_pred CeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhc
Confidence 35999999999964 35799999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchh----------hcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|+||+|.+|++|++|||.++.. ...+++++.++++.+++++.+ ....+..||||||||++||||++
T Consensus 409 ~~v~Q~~~lf~~Ti~~Ni~~~~~---~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall 485 (571)
T TIGR02203 409 ALVSQDVVLFNDTIANNIAYGRT---EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL 485 (571)
T ss_pred eEEccCcccccccHHHHHhcCCC---CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998731 124567788888888875311 22335679999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|+++|||||||+||+.+++.+++.|.++.+ ++|+|+|||+.+.+ ..||+|++|++|++++.|+++++.+.
T Consensus 486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g~~~~l~~~ 557 (571)
T TIGR02203 486 KDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHNELLAR 557 (571)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeCCHHHHHHc
Confidence 99999999999999999999999999998854 79999999999877 56999999999999999999998654
No 170
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=5.3e-53 Score=400.39 Aligned_cols=213 Identities=31% Similarity=0.508 Sum_probs=188.0
Q ss_pred eEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHHHhcceEEE
Q 022337 68 ELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----VLSLRRKVGML 143 (298)
Q Consensus 68 ~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----~~~~~~~ig~v 143 (298)
|++++|+ ++. + |+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ....++.++|+
T Consensus 4 ~l~~~~~-~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLG-DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEEC-CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 8999995 444 5 999999999999999999999999999999999999999999999985432 12456789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
||++.+|+. ||+||+.++..........+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999985 99999998754222112234688999999996 5789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||+.+++.+++.|++++++.|+|+|++|||++++..+||++++|++|++++.|+++++..
T Consensus 160 s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 160 AALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 99999999999999999976668999999999999999999999999999999999888754
No 171
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-52 Score=378.27 Aligned_cols=228 Identities=45% Similarity=0.641 Sum_probs=194.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~~~~~ 135 (298)
+++++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+...
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999995 46799999999999999999999999999999999999863 79999999999864 23345
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++.+ +..++++.+||||||||++|||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 82 LRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 677899999999888889999999864333221 12355777888888742 356788999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CCh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHP 288 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~ 288 (298)
+.+|++|||||||++||+.+++.+.+.|+++. + +.|||++|||++.+..+||++++|++|++++.++++++... .+.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 239 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDK 239 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCCh
Confidence 99999999999999999999999999999985 3 78999999999999999999999999999999998887532 344
Q ss_pred HHHHH
Q 022337 289 MALRF 293 (298)
Q Consensus 289 ~~~~~ 293 (298)
....|
T Consensus 240 ~~~~~ 244 (250)
T PRK14240 240 RTEDY 244 (250)
T ss_pred HHHHh
Confidence 43333
No 172
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.3e-52 Score=379.61 Aligned_cols=233 Identities=26% Similarity=0.396 Sum_probs=195.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe-----CCCCCHHH-
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD-----ITDLDVLS- 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~-----i~~~~~~~- 135 (298)
++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+..+
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4799999999995 4579999999999999999999999999999999999999999999999987 65544332
Q ss_pred ---HhcceEEEeCCCC--CCc-ccHHHHhHhCcc-ccC--CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 136 ---LRRKVGMLFQIPA--LFE-GTVVDNIRYGPQ-LRG--KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 136 ---~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~-~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
+++.++|++|++. ++. .|+.+|+.+... ... .....+++.++++.+++.....++.+.+|||||||||+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 2357999999985 333 488999865321 110 1122456788999999963467899999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-c
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-A 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~ 285 (298)
|||+.+|++|||||||++||+.+++.+++.|.++.++.|.|+|+|||+++.+..+||++++|++|++++.++++++.. +
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~~ 240 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDP 240 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcCC
Confidence 999999999999999999999999999999999876558999999999999999999999999999999999888754 2
Q ss_pred CChHHHHHhh
Q 022337 286 KHPMALRFLQ 295 (298)
Q Consensus 286 ~~~~~~~~~~ 295 (298)
.+.+.+.|+.
T Consensus 241 ~~~~~~~~l~ 250 (253)
T TIGR02323 241 QHPYTQLLVS 250 (253)
T ss_pred CCHHHHHHHH
Confidence 3455555543
No 173
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-52 Score=378.19 Aligned_cols=230 Identities=37% Similarity=0.611 Sum_probs=194.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CccEEEECCEeCCCC--CHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--P---PSGTVFLDGRDITDL--DVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--p---~~G~I~i~g~~i~~~--~~~ 134 (298)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... ...
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 3589999999995 5679999999999999999999999999999999999986 4 699999999998542 233
Q ss_pred HHhcceEEEeCCCCCCc-ccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.+++.++|+||++.+|+ .|+.||+.++....+. . ..++++.++++.+++.. +..++.+.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 56778999999999888 5999999876432221 1 12345778899999852 2457789999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-C
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-K 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~ 286 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++||+++.+..+|||+++|++|++++.|+++++... .
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 239 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999999964 58999999999999999999999999999999999887542 3
Q ss_pred ChHHHHHh
Q 022337 287 HPMALRFL 294 (298)
Q Consensus 287 ~~~~~~~~ 294 (298)
+.....|.
T Consensus 240 ~~~~~~~~ 247 (252)
T PRK14256 240 KKQTEDYI 247 (252)
T ss_pred cHHHHHHH
Confidence 44444443
No 174
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-53 Score=424.98 Aligned_cols=235 Identities=31% Similarity=0.449 Sum_probs=203.1
Q ss_pred CCeEEEEeEEEEeCC----------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC
Q 022337 61 KPKFRVRELRKESDD----------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~----------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~ 130 (298)
.++++++||++.|+. ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 468999999999952 1469999999999999999999999999999999999999999999999999876
Q ss_pred CCHH---HHhcceEEEeCCC--CCCc-ccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH
Q 022337 131 LDVL---SLRRKVGMLFQIP--ALFE-GTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ 201 (298)
Q Consensus 131 ~~~~---~~~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ 201 (298)
.+.. .++++|+|+||++ .+++ .||.+|+.++...++. . ...+++.++++.+|++....++++++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 5432 3467899999998 4776 4999999876432221 1 123568899999999634679999999999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
||+|||||+.+|++|||||||++||+.++..++++|++++++.|.|||+||||++.+..+||||++|++|++++.|++++
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~ 550 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRA 550 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999977668999999999999999999999999999999999988
Q ss_pred hhc-cCChHHHHHhh
Q 022337 282 LSE-AKHPMALRFLQ 295 (298)
Q Consensus 282 ~~~-~~~~~~~~~~~ 295 (298)
+.. +.+++...+..
T Consensus 551 i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 551 VFENPQHPYTRKLMA 565 (623)
T ss_pred HhcCCCCHHHHHHHh
Confidence 753 45667665543
No 175
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-52 Score=392.22 Aligned_cols=232 Identities=38% Similarity=0.605 Sum_probs=197.3
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
..+++++|++++|.+ .+++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++.. .+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 458999999999963 3479999999999999999999999999999999999996 579999999999863 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCcc---HHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLT---ENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~---~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|++||+.|+....+.... ++.+.++++.+++.+ +..++++.+||||||||++||
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 34668889999999999989999999987533222111 123567788888732 346788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-c
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-A 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~ 285 (298)
|||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.++||||++|++|++++.|+++++.. +
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999999864 6899999999999999999999999999999999999754 3
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.+.....|.
T Consensus 316 ~~~~~~~~~ 324 (329)
T PRK14257 316 KNKRTKDYI 324 (329)
T ss_pred CcHHHHHHh
Confidence 444444443
No 176
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-52 Score=376.88 Aligned_cols=220 Identities=43% Similarity=0.673 Sum_probs=191.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----ccEEEECCEeCCCC--CHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITDL--DVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-----~G~I~i~g~~i~~~--~~~ 134 (298)
++++++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|+++... +..
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 5799999999995 567999999999999999999999999999999999999997 69999999988542 234
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|+||++.+|+.|++||+.++...++... .++.+.++++.+++.+ ++.++++.+|||||||||+||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 161 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV 161 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 56788999999999888899999998654322211 1244667788888742 35688999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|+.+|++|||||||+|||+.++..+.++|+++. + ++|||++||+++.+..+||++++|++|++++.|+++++..
T Consensus 162 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 162 LAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999984 3 7999999999999999999999999999999999988754
No 177
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-52 Score=384.18 Aligned_cols=220 Identities=27% Similarity=0.404 Sum_probs=193.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC--------ccEEEECCEeCCCCCHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP--------SGTVFLDGRDITDLDVL 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~--------~G~I~i~g~~i~~~~~~ 134 (298)
||+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++...+..
T Consensus 1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 589999999995 568999999999999999999999999999999999999998 99999999998766666
Q ss_pred HHhcceEEEeCCCCC-CcccHHHHhHhCcccc----CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPAL-FEGTVVDNIRYGPQLR----GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l-~~~tv~eni~~~~~~~----~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.+++.++|+||++.+ ++.|++||+.++.... +. ....+.+.++++.+++. ++.++++.+|||||||||+|||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHH
Confidence 667789999999864 5579999998863211 11 11234578899999996 5788999999999999999999
Q ss_pred HHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 208 TLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 208 al~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||+ .+|++|||||||++||+.+++.+.+.|+++.++.|+|||+||||++.+.++||++++|++|++++.|+
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecC
Confidence 999 59999999999999999999999999999876558999999999999999999999999999999999
Q ss_pred hhhhhc
Q 022337 279 PDLLSE 284 (298)
Q Consensus 279 ~~~~~~ 284 (298)
++++..
T Consensus 239 ~~~~~~ 244 (272)
T PRK13547 239 PADVLT 244 (272)
T ss_pred HHHHcC
Confidence 887744
No 178
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-52 Score=379.84 Aligned_cols=219 Identities=41% Similarity=0.630 Sum_probs=190.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~~~~~ 135 (298)
+++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++.. .+...
T Consensus 4 ~l~i~~v~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYG-SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEEC-CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 699999999995 46799999999999999999999999999999999999974 79999999998843 23345
Q ss_pred HhcceEEEeCCCCCCc-ccHHHHhHhCccccCC---CccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGK---KLTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++.++|+||++.+|+ .|++||+.++....+. ...++++.++++.+++. .+..++++.+|||||||||+||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 6788999999999887 4999999876432221 11234577889999884 135678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe------CCEEEEeeChhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLL 282 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~------~G~i~~~g~~~~~ 282 (298)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++.+.++|||+++|+ +|++++.|+++++
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 9999999999999999999999999999999853 6899999999999999999999997 7999999999887
Q ss_pred hc
Q 022337 283 SE 284 (298)
Q Consensus 283 ~~ 284 (298)
..
T Consensus 241 ~~ 242 (258)
T PRK14241 241 FS 242 (258)
T ss_pred Hh
Confidence 54
No 179
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-52 Score=377.09 Aligned_cols=229 Identities=43% Similarity=0.656 Sum_probs=195.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--DVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~~~ 134 (298)
++++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 2 PIIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred ceEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4799999999995 56799999999999999999999999999999999999984 899999999988542 223
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++.+ ...++++.+||||||||++||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a 160 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA 160 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence 4567899999999988889999998764322211 12345677889888852 24688899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||+|||+.++..+.+.|.++.+ ++|+|++||+++.+..+||++++|++|+++..|+++++.+. .+
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 238 (250)
T PRK14262 161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKN 238 (250)
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCCCC
Confidence 9999999999999999999999999999999864 68999999999999999999999999999999999887543 23
Q ss_pred hHHHHH
Q 022337 288 PMALRF 293 (298)
Q Consensus 288 ~~~~~~ 293 (298)
.+.+.|
T Consensus 239 ~~~~~~ 244 (250)
T PRK14262 239 KLTEEY 244 (250)
T ss_pred hHHHHH
Confidence 344444
No 180
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-52 Score=377.54 Aligned_cols=232 Identities=38% Similarity=0.615 Sum_probs=197.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++... +.
T Consensus 4 ~~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 4 EIILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred cceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 45899999999995 56799999999999999999999999999999999999763 489999999998654 33
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
...++.++|+||++.+|+.|++||+.++...++.. ..++.+.++++.+++.+ +..++.+.+||||||||++|||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 45577899999999988889999999875433221 12345677888888742 2467889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AK 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~ 286 (298)
||+.+|+++||||||+|||+.+++.+.+.|+++++ ++|||++||+++.+..+||++++|++|++++.|+++++.. +.
T Consensus 163 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 240 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCCC
Confidence 99999999999999999999999999999999864 5899999999999999999999999999999999988754 23
Q ss_pred ChHHHHHhh
Q 022337 287 HPMALRFLQ 295 (298)
Q Consensus 287 ~~~~~~~~~ 295 (298)
+++.+.|.+
T Consensus 241 ~~~~~~~~~ 249 (253)
T PRK14261 241 EELTENYIT 249 (253)
T ss_pred cHHHHHHhc
Confidence 456666553
No 181
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.1e-52 Score=374.75 Aligned_cols=214 Identities=33% Similarity=0.535 Sum_probs=184.1
Q ss_pred EEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999953 3579999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHH---------HHHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVY---------KLLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+||++.+|+.|+.||+.++... . ...++. +.++.+ +++ ...++++.+|||||||||+|||||+.
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~--~--~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPG--M--SMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred EcCCchhccchHHHHhhccCCC--C--CHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 9999988888999999875421 1 112222 233333 443 34577899999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|++|||||||++||+.+++.+.+.|++++ + |+|||++|||++.+. .||++++|++|++++.|+++++...
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999999999999985 3 899999999999995 6999999999999999998887654
No 182
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-52 Score=375.95 Aligned_cols=220 Identities=42% Similarity=0.643 Sum_probs=191.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCC-CCCHHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDIT-DLDVLS 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~-~~~~~~ 135 (298)
++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++. ..+...
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 2 NKFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred CeEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 3689999999995 56799999999999999999999999999999999999986 5999999999885 234455
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+++.++|+||++.+|+.|+.||+.++....+.. ..++++.++++.+++.+ +..++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 677899999999988889999998764322211 11345677888888742 356788999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++.+..+|||+++|++|++++.|+++++..
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999864 5899999999999999999999999999999999888753
No 183
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.9e-52 Score=369.70 Aligned_cols=209 Identities=33% Similarity=0.505 Sum_probs=184.4
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ + +++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ .+++.++|+
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 46899999995 2 578999999999999999999999999999999999999999999999986543 356789999
Q ss_pred eCCCCCCc-ccHHHHhHhCcccc-C-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLR-G-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+ .|+.||+.++.... . ....++++.++++.+++. +..++.+.+||||||||++|||||+.+|+++||||
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999887 49999998753211 1 112245678899999996 57899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||++||+.+++.+.+.|.++.++.|.|||++||+++++..+||++++|++|++++.|+
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999876558999999999999999999999999999998764
No 184
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.6e-52 Score=424.18 Aligned_cols=224 Identities=32% Similarity=0.493 Sum_probs=197.6
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|+++ +++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||.++.+++..++|+.+
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 469999999999643 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||+|++.+|+.|++||+.++.. ..+++++.++++.+++++ ...++.+..||||||||++|||||+
T Consensus 534 ~~v~q~~~lf~~ti~eNi~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 534 GVVLQENVLFSRSIRDNIALCNP----GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred eEEccCCeehhhhHHHHHhcCCC----CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998631 234667777777777642 2234456789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
++|++|||||||++||+.+++.+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+....+.
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMREICR--GRTVIIIAHRLSTVR-ACDRIIVLEKGQIAESGRHEELLALQGLYA 686 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC--CCEEEEEeCChHHHH-hCCEEEEEeCCEEEEeCCHHHHHHcCChHH
Confidence 99999999999999999999999999999853 799999999999986 499999999999999999999876544444
Q ss_pred HH
Q 022337 291 LR 292 (298)
Q Consensus 291 ~~ 292 (298)
+.
T Consensus 687 ~l 688 (694)
T TIGR01846 687 RL 688 (694)
T ss_pred HH
Confidence 43
No 185
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-52 Score=378.85 Aligned_cols=222 Identities=35% Similarity=0.584 Sum_probs=193.4
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
..++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+
T Consensus 17 ~~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 17 EEIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred CCeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 345899999999995 5689999999999999999999999999999999999997 589999999999853 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|++||+.++....+. . ..++++.++++.+++.+ +..++++.+||||||||++||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 34567789999999998888999999986432221 1 12345778899998842 356888999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||+.+|++|||||||+|||+.++..+.+.|+++. + +.|||++||+++.+..+||++++|++|++++.|+++++..
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999985 3 7899999999999999999999999999999999988754
No 186
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-52 Score=382.33 Aligned_cols=222 Identities=38% Similarity=0.649 Sum_probs=192.9
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CC
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LD 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~ 132 (298)
..++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+
T Consensus 36 ~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 36 GETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 567899999999995 4679999999999999999999999999999999999997 689999999998853 23
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
...++++++|+||++.+|+.|+.||+.++....+.. ...+++.++++.+++.. +..++++.+|||||||||+||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra 194 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA 194 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence 345678899999999888789999998764332221 12456788999999842 35688999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE-EEeCCEEEEeeChhhhhc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC-LLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~-vl~~G~i~~~g~~~~~~~ 284 (298)
|+.+|++|||||||+|||+.+++.+.+.|+++++ +.|||++|||++.+..+|||++ +|++|++++.|+++++..
T Consensus 195 L~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~ 269 (285)
T PRK14254 195 IAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269 (285)
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999965 4799999999999999999975 679999999999888753
No 187
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-52 Score=380.55 Aligned_cols=231 Identities=37% Similarity=0.578 Sum_probs=193.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 133 (298)
.++++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 22 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 22 KVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred ceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 45899999999995 5679999999999999999999999999999999999997 699999999998853 233
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+... .++.+.++++.+++. .+..++++.+||||||||++|||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 456778999999999888899999987643222111 123456667776432 13567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-C
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-K 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~ 286 (298)
||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++|||++.+..+||++++|++|++++.|+++++... .
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 258 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPS 258 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCC
Confidence 99999999999999999999999999999999864 68999999999999999999999999999999999887543 3
Q ss_pred ChHHHHHh
Q 022337 287 HPMALRFL 294 (298)
Q Consensus 287 ~~~~~~~~ 294 (298)
+.....|.
T Consensus 259 ~~~~~~~~ 266 (271)
T PRK14238 259 DKRTEDYI 266 (271)
T ss_pred CHHHHHHH
Confidence 33444443
No 188
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3e-52 Score=370.65 Aligned_cols=209 Identities=30% Similarity=0.580 Sum_probs=186.9
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|+
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEE
Confidence 47899999995 567999999999999999999999999999999999999999999999999875321 3579999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
||++.+++ .|++||+.++....+. ...++.++++.++++ +..++++.+|||||+||++||||++.+|++|||||||
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~ 152 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGL--PDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPT 152 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCC--CHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99998887 5999999875433222 345788899999996 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+|||+.+++.+.+.|++++++ |.|||++|||++.+..+|||+++|++|++++.|++.+
T Consensus 153 ~~LD~~~~~~l~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 153 NGLDPIGIQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred cCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999998754 8999999999999999999999999999999998764
No 189
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.7e-52 Score=413.83 Aligned_cols=221 Identities=29% Similarity=0.441 Sum_probs=194.6
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++|++++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|+++
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 359999999999643 4799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|++|++.+|+.|++||+.++.. ..+++++.++++..++++ ...++.+..||||||||++|||||+
T Consensus 392 ~~v~q~~~lf~~ti~~Ni~~~~~----~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall 467 (569)
T PRK10789 392 AVVSQTPFLFSDTVANNIALGRP----DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALL 467 (569)
T ss_pred EEEccCCeeccccHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998732 234566777777777642 1233556789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
++|++|||||||++||+.+++.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+++++.+....+
T Consensus 468 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tii~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 543 (569)
T PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALT-EASEILVMQHGHIAQRGNHDQLAQQSGWY 543 (569)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecchhHHH-cCCEEEEEeCCEEEEecCHHHHHHcCChH
Confidence 99999999999999999999999999998853 899999999999885 59999999999999999999886543333
No 190
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-52 Score=373.51 Aligned_cols=227 Identities=36% Similarity=0.595 Sum_probs=197.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++.++|+
T Consensus 1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEE
Confidence 46899999995 5689999999999999999999999999999999999999999999999999875443 35789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+|++.+|+. |+.||+.++...++.. ...+++.++++.+++. ++.++.+.+||+|||||++|||||+.+|+++||||
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999998874 9999998764332221 1234677899999996 57899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||+|||+.+++.+.+.|+++.++.|.|||++||+++++..+|||+++|++|++++.++++++... .+++...|.
T Consensus 157 P~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~~~~~~~~~ 231 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRFVADFI 231 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCchHHHHHhc
Confidence 99999999999999999998765589999999999999999999999999999999988877542 234555443
No 191
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-52 Score=370.46 Aligned_cols=208 Identities=34% Similarity=0.555 Sum_probs=180.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHHHhcc
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----VLSLRRK 139 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----~~~~~~~ 139 (298)
+.+ ||+|+|+ ++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....++.
T Consensus 2 ~~~-~l~~~~~-~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLP-DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecC-Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 344 8999995 4444 99999999 999999999999999999999999999999999999875321 2245678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
++|+||++.+++ .|+.||+.++.........++++.++++.+++. +..++++.+||||||||++|||||+.+|++|||
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999887 599999987643211112345678899999996 578899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||||+|||+.+++.+.+.|++++++.|+|||++|||++++..+||++++|++|++++.|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999997655899999999999999999999999999998754
No 192
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-52 Score=383.39 Aligned_cols=232 Identities=41% Similarity=0.611 Sum_probs=196.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--C
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDL--D 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~--~ 132 (298)
..++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... .
T Consensus 36 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 456899999999995 4579999999999999999999999999999999999864 4999999999987542 2
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iA 206 (298)
...+++.++|+||++.+|+.|+.||+.++....+.. ..++++.++++.+++. .+..++++.+||||||||++||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 234577899999999988789999999864332221 1234567788888873 1356888999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA- 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~- 285 (298)
|||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++.+..+|||+++|++|++++.|+++++...
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~~ 272 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999864 58999999999999999999999999999999998887542
Q ss_pred CChHHHHHh
Q 022337 286 KHPMALRFL 294 (298)
Q Consensus 286 ~~~~~~~~~ 294 (298)
.+.+.+.|.
T Consensus 273 ~~~~~~~~~ 281 (286)
T PRK14275 273 KDRMTEDYI 281 (286)
T ss_pred CcHHHHHHH
Confidence 344444443
No 193
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-52 Score=378.42 Aligned_cols=229 Identities=37% Similarity=0.593 Sum_probs=194.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 133 (298)
.++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.. .+.
T Consensus 8 ~~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 8 ETVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred ceEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 45899999999995 5679999999999999999999999999999999999986 489999999998742 234
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
..++++++|+||++.+|+.|+.||+.++....+.. ...+++.++++.+++.. ...++.+.+||||||||++|||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 45677899999999888789999999865332211 12345667788888732 246788999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe---------CCEEEEeeChh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV---------NGEIVEVLKPD 280 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~---------~G~i~~~g~~~ 280 (298)
+.+|++|||||||+|||+.+++.+.+.|.++.+ +.|||++||+++.+..+|||+++|+ +|++++.|+++
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTE 244 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHH
Confidence 999999999999999999999999999999964 5899999999999999999999998 89999999999
Q ss_pred hhhc-cCChHHHH
Q 022337 281 LLSE-AKHPMALR 292 (298)
Q Consensus 281 ~~~~-~~~~~~~~ 292 (298)
++.. +.+.....
T Consensus 245 ~~~~~~~~~~~~~ 257 (264)
T PRK14243 245 KIFNSPQQQATRD 257 (264)
T ss_pred HHHhCCCcHHHHH
Confidence 8854 33433333
No 194
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.7e-51 Score=413.21 Aligned_cols=221 Identities=29% Similarity=0.512 Sum_probs=193.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975567999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|++|++.+|+.|++||+.++.. ..+++++.++++..++++ ...++.+..||||||||++|||||++
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~----~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGRE----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred EEccCCccCcccHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998732 123455555555554421 23456678999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+|++|||||||++||+.+++.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.+....+
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~--~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~y 563 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRK--NRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKGSFQELIQKDGRF 563 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEEcChHHHH-cCCEEEEEECCEEEEECCHHHHHHCCChH
Confidence 9999999999999999999999999998843 899999999999985 59999999999999999999887644333
No 195
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-52 Score=373.96 Aligned_cols=217 Identities=34% Similarity=0.578 Sum_probs=184.8
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999543 279999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHH-----HHHHHHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTEN-----EVYKLLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+||++.+++.|++||+.++..........+ .+.+.++.+ ++. ...++++.+||||||||++|||||+.+|++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999888899999988643211000000 123444444 554 356778999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+||||||++||+.+++.+.+.|+++. + +.|||++|||++.+.. ||++++|++|++++.++++++..
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 99999999999999999999999985 3 7999999999999976 99999999999999999888754
No 196
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.7e-53 Score=353.72 Aligned_cols=212 Identities=39% Similarity=0.565 Sum_probs=191.8
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~ 136 (298)
.|+++++++..+.+ ..+|++|+|.|++||.+|||||||||||||+-+++||.+|++|+|++.|+++..++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 68999999877533 3699999999999999999999999999999999999999999999999999887643 33
Q ss_pred h-cceEEEeCCCCCCc-ccHHHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 R-RKVGMLFQIPALFE-GTVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~-~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
| +++|||||.+.+.| +|..||+..++.+.+. ......+.+.++.+|+. +.++.+|.+|||||+|||+|||||+..
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCC
Confidence 3 67999999999988 4999999999887773 23345688999999997 578899999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
|++|+.||||.+||..+.+++.+++..+.++.|.|.|+||||...+.+ |+|++-|.+|+++++
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~~ 227 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVED 227 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceeccC
Confidence 999999999999999999999999999999999999999999998865 999999999999753
No 197
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=6.2e-52 Score=375.97 Aligned_cols=218 Identities=27% Similarity=0.431 Sum_probs=189.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHHHHhc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP----PSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p----~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+++++|++++| ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++... ...++
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGR 79 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccc
Confidence 69999999999 35799999999999999999999999999999999999999 999999999988532 22246
Q ss_pred ceEEEeCCCC-CC-c-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch--hhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 139 KVGMLFQIPA-LF-E-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS--FLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 139 ~ig~v~Q~~~-l~-~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
.++|+||++. .| + .|+.+|+.+.....+....++++.++++.+++.+. +.++++.+|||||||||+|||||+.+|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 7999999985 33 4 48888887643222222234678889999999631 468899999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||+|||+.+++.+.+.|++++++.|.|||++||+++.+..+|||+++|++|++++.++++++..
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999876558999999999999999999999999999999999988754
No 198
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-52 Score=371.18 Aligned_cols=214 Identities=35% Similarity=0.610 Sum_probs=183.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++++|++++|++++.+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 37899999999644579999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+||++.+|+.|++||+.++... ....++.++++.+++.. ...++++.+|||||||||+|||||+.+
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPN----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCC----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999998888999999876421 12233444444444321 234566799999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|++|||||||+|||+.+++.+++.|+++. + |+|||++||+++.+. .||++++|++|++++.++.+++.
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999985 3 899999999999986 59999999999999988877654
No 199
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.8e-52 Score=372.08 Aligned_cols=228 Identities=39% Similarity=0.616 Sum_probs=198.2
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ ++++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++.++|+
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~--~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH--ARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC--hhhcCEEEE
Confidence 47899999995 567999999999999999999999999999999999999999999999999986543 236789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+. |+.||+.+....++.. ...+++.++++.+++. .+.++.+.+||+||+||++|||||+.+|+++||||
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999875 9999998765432221 1235678899999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFLQ 295 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~~ 295 (298)
||+|||+.+++.+.+.|.+++++.|+|+|++||+++.+.++||++++|++|++++.++.+++.. +.+++...|.+
T Consensus 157 P~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLG 232 (237)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCCCcHHHHHhcc
Confidence 9999999999999999999876448999999999999999999999999999999999888754 23455555544
No 200
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5e-52 Score=381.01 Aligned_cols=212 Identities=27% Similarity=0.470 Sum_probs=191.0
Q ss_pred eEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++...+...+|++++
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 3789999999953 4579999999999999999999999999999999999997 7999999999998777778889999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCC-----------CChhHHHHHHHHHHHc
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE-----------ISVGQAQRVALARTLA 210 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkQRv~iAral~ 210 (298)
|+||++.+|+.|+++|+.... ....+++.++++.+|+. .+.++++.. ||||||||++|||||+
T Consensus 81 ~v~q~~~lf~~tv~~nl~~~~-----~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 81 VIPQKVFIFSGTFRKNLDPYG-----KWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred EECCCcccchhhHHHHhhhcc-----CCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999996321 12346788899999996 567777766 9999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|+||||||||++||+.+++.+.+.|+++. + ++|||+||||++.+.. ||||++|++|++++.|+++++..
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAF-A-DCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence 9999999999999999999999999999874 3 8999999999999875 99999999999999999999866
No 201
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-52 Score=376.07 Aligned_cols=228 Identities=39% Similarity=0.602 Sum_probs=192.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCCC--HHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDLD--VLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~~--~~~ 135 (298)
.-+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+ ...
T Consensus 5 ~~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 5 HASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 357899999995 5689999999999999999999999999999999999986 47999999999875432 234
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCC--C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK--K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~--~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++.++|+||++.+|+.|++||+.++....+. . ..++++.++++.+++.+ ...++.+.+||||||||++||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lara 163 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARA 163 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHH
Confidence 57789999999998888999999876322221 1 12345778899999853 24577899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||+|||+.+++.+.+.|+++. + |+|||++|||++.+..+|||+++|++|++++.|+++++... .+
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 241 (251)
T PRK14244 164 IAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQS 241 (251)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCCCC
Confidence 999999999999999999999999999999985 3 79999999999999999999999999999999999887543 33
Q ss_pred hHHHHH
Q 022337 288 PMALRF 293 (298)
Q Consensus 288 ~~~~~~ 293 (298)
.....|
T Consensus 242 ~~~~~~ 247 (251)
T PRK14244 242 SKTKRY 247 (251)
T ss_pred hHHHHh
Confidence 444433
No 202
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.9e-52 Score=368.82 Aligned_cols=205 Identities=39% Similarity=0.599 Sum_probs=180.5
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|+++.|+++ +.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 7899999999542 469999999999999999999999999999999999999999999999999866555556778999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCC-----------CCCChhHHHHHHHHHHHcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG-----------GEISVGQAQRVALARTLAN 211 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~~LSgGqkQRv~iAral~~ 211 (298)
+||++.+++.|+.||+.++... ...+++.++++.+++. ++.++.+ .+||||||||++|||||+.
T Consensus 83 ~~q~~~~~~~tv~e~l~~~~~~----~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 83 VPQDVTLFYGTLRDNITLGAPL----ADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred eCCCCccccchHHHHhhcCCCC----CCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 9999998878999999875321 1244567788888885 4556544 6999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
+|++|||||||+|||+.+++.+++.|+++++ ++|||++|||++.+ .+||++++|++|++++.
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999865 48999999999987 69999999999999764
No 203
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-53 Score=358.32 Aligned_cols=232 Identities=35% Similarity=0.528 Sum_probs=203.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC---------
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL--------- 131 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~--------- 131 (298)
++.++++|+.|+| +...+|++||++-++|+++.|||.|||||||+||||+=|.+|+.|+|.++|+.+.-.
T Consensus 4 ~~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 4 ENALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ccceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 3569999999999 467899999999999999999999999999999999999999999999999987421
Q ss_pred -C---HHHHhcceEEEeCCCCCCc-ccHHHHhHhCcc-ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH
Q 022337 132 -D---VLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQ-LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 132 -~---~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~-~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv 203 (298)
+ ...+|.++|+|||+++|++ +||.||+.-.+. ..+.+ ...++++.+|.++|+. +..+.||..|||||+||+
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~ 161 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRV 161 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHH
Confidence 1 2346778999999999998 599999986642 22322 3346788899999997 578899999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|||||+.+|+++|+|||||+|||+..-++++.+++++++ |+|.++|||.|.++.+.+.+|+++++|.|-+.|+|+++.
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence 9999999999999999999999999999999999999876 999999999999999999999999999999999999986
Q ss_pred cc-CChHHHHHhh
Q 022337 284 EA-KHPMALRFLQ 295 (298)
Q Consensus 284 ~~-~~~~~~~~~~ 295 (298)
.+ ..+-.++|+.
T Consensus 241 ~nP~S~RlkqFls 253 (256)
T COG4598 241 GNPQSPRLKQFLS 253 (256)
T ss_pred cCCCCHHHHHHHH
Confidence 54 4445555554
No 204
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-52 Score=371.83 Aligned_cols=227 Identities=36% Similarity=0.591 Sum_probs=195.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
|+++|++++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++|+
T Consensus 1 l~~~~l~~~~~-~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWK-E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeC-C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEE
Confidence 46899999995 3 48999999999999999999999999999999999999999999999999876443 35789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||++.+|+ .|+.||+.++....+.. ...+++.++++.+++. ...++++.+||||||||++||||++.+|++++|||
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 99999887 59999998764322221 1234678899999996 57899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFLQ 295 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 295 (298)
||+|||+.+++.+.+.|+++.++.|.|+|++||+++.+..+||++++|++|++++.++++++.+. .++....+.+
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 231 (235)
T cd03299 156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEFVAEFLG 231 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCcccHHHHHHhC
Confidence 99999999999999999998765589999999999999999999999999999999998877542 2334444443
No 205
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-52 Score=374.31 Aligned_cols=228 Identities=38% Similarity=0.601 Sum_probs=191.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----ccEEEECCEeCCC--CCHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-----~G~I~i~g~~i~~--~~~~~ 135 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++.. .+...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 689999999995 568999999999999999999999999999999999999875 8999999999864 23345
Q ss_pred HhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc---cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL---TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++.++|+||++.+|+. |+.||+.++....+... ..+.+.++++.+++.. +..++++.+||||||||++||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARA 162 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHH
Confidence 67789999999998874 99999987543222111 1234556666676531 34678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~ 287 (298)
|+.+|++|||||||++||+.+++.+.+.|+++++ ++|+|++||+++.+..+|||+++|++|++++.|+++++... .+
T Consensus 163 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 240 (252)
T PRK14272 163 LAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRD 240 (252)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCc
Confidence 9999999999999999999999999999999853 68999999999999999999999999999999999887543 33
Q ss_pred hHHHHH
Q 022337 288 PMALRF 293 (298)
Q Consensus 288 ~~~~~~ 293 (298)
.....|
T Consensus 241 ~~~~~~ 246 (252)
T PRK14272 241 ERTEAY 246 (252)
T ss_pred HHHHHH
Confidence 444444
No 206
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-52 Score=371.83 Aligned_cols=215 Identities=38% Similarity=0.611 Sum_probs=184.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|++++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999995446799999999999999999999999999999999999999999999999998776666677889999
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCC----------chhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
||++.+|+.|+.||+.++... .....+.+.++..++. +...++++.+||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPD----ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred CCCChhhcchHHHHHhhcCCC----CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999988999999886421 1122233333333331 12456678899999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|||||||+|||+.++..+.+.|.++++ |+|||++||+++.+.. ||++++|++|++++.|+.+++.+.
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999854 8999999999999965 999999999999999998877553
No 207
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.7e-52 Score=412.02 Aligned_cols=218 Identities=29% Similarity=0.467 Sum_probs=193.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~i 140 (298)
++++++|++++|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+... .++.+
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 5799999999995 567999999999999999999999999999999999999999999999999986544333 35679
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcccc---C-CCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLR---G-KKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~---~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+|+||++.+++. |++||+.++.... + ... .++++.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFES 160 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999988874 9999999874321 1 111 234678899999996 4678999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
++|||||||++||+.+++.+++.|++++++ |.|||++|||++.+..+||++++|++|++++.++++++
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 161 KVIIMDEPTDALTDTETESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999999999999999999754 89999999999999999999999999999999887765
No 208
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-51 Score=377.05 Aligned_cols=221 Identities=43% Similarity=0.640 Sum_probs=192.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~--~~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45899999999995 5679999999999999999999999999999999999988 489999999999854 233
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++.+ +..++.+.+|||||||||+|||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 181 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR 181 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence 45678899999999988889999998764322221 12345778889888852 3567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|++||+++.+..+|||+++|++|++++.|+++++..
T Consensus 182 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 256 (272)
T PRK14236 182 AIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFT 256 (272)
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhc
Confidence 99999999999999999999999999999999964 6899999999999999999999999999999999888754
No 209
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.5e-52 Score=409.71 Aligned_cols=218 Identities=28% Similarity=0.479 Sum_probs=195.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh-cc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-RK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~-~~ 139 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+....+ +.
T Consensus 9 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 45899999999995 56799999999999999999999999999999999999999999999999998766554443 56
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+||+||++.+++. ||+||+.++... ....++++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK--RQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc--chHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999988875 999999987532 122345688899999997 567899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++.
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 9999999999999999999999764 899999999999999999999999999999999887763
No 210
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-52 Score=411.86 Aligned_cols=220 Identities=25% Similarity=0.484 Sum_probs=194.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHH-Hh
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLS-LR 137 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~~ 137 (298)
+++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+... .+
T Consensus 3 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 3 EYLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred CceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 35899999999995 56799999999999999999999999999999999999996 8999999999987655443 35
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCcccc--C-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLR--G-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~--~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+.+||+||++.+++. |++||+.++...+ + .. ...+++.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhc
Confidence 779999999988874 9999999875432 1 11 1234678899999996 57889999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++|||||||++||+.++..+++.|.++++ .|+|||++|||++.+..+||++++|++|+++..|+++++.
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999999999975 4899999999999999999999999999999999887653
No 211
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-52 Score=411.38 Aligned_cols=220 Identities=27% Similarity=0.423 Sum_probs=194.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ 139 (298)
.++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+... .++.
T Consensus 3 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 3 TPYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred CceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 35899999999995 567999999999999999999999999999999999999999999999999987666443 3467
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccc----cCC---C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQL----RGK---K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~----~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++|+||++.+++. ||+||+.++... ++. . ...+++.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHH
Confidence 9999999988874 999999876421 121 1 1234678899999996 568999999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||+|||+.++..+++.|++++++ |+|||+||||++.+..+||++++|++|+++..|+++++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999765 899999999999999999999999999999999887753
No 212
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=2.6e-51 Score=410.78 Aligned_cols=217 Identities=35% Similarity=0.557 Sum_probs=193.1
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++|++++|+++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|++||.++.+++...++++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 359999999999642 479999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
++|+||++.+|++|++|||.++.. ..+++++.++++.+++.+. ...+.+..||||||||++||||+
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~----~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRP----DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCC----CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999998632 2345678888888776421 12334668999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+++|++||||||||+||+.+++.+++.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~~~~~-~~d~vi~l~~g~~~~~g~~~~l~~~ 564 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRLATVL-KADRIVVMDQGRIVAQGTHAELIAK 564 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEECCEEEeeecHHHHHHc
Confidence 999999999999999999999999999999853 799999999998875 6999999999999999999988654
No 213
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-51 Score=378.81 Aligned_cols=222 Identities=38% Similarity=0.569 Sum_probs=192.8
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCCC-H
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDLD-V 133 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~~-~ 133 (298)
..++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+ .
T Consensus 18 ~~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 18 AAPAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cCcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 356899999999995 56899999999999999999999999999999999999986 7999999999986543 2
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccC-CCc--cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG-KKL--TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~-~~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|+++|+.++..... ... ..+.+.++++.+++.. +..++.+.+||||||||++|||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAr 176 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLAR 176 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHH
Confidence 356778999999999888899999987643211 111 1234567888889853 2457889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++||+++.+..+|||+++|++|++++.|+++++.+
T Consensus 177 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 177 TLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999864 4899999999999999999999999999999999988754
No 214
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3e-52 Score=405.38 Aligned_cols=235 Identities=35% Similarity=0.540 Sum_probs=203.1
Q ss_pred CeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC----ccEEEECCEeCCCCCHH
Q 022337 62 PKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP----SGTVFLDGRDITDLDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~----~G~I~i~g~~i~~~~~~ 134 (298)
++++++||++.|... ..+++||||+|.+||++||+|+|||||||+.+.|+|++++. +|+|.++|+++..++..
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999998533 25999999999999999999999999999999999999987 89999999998877654
Q ss_pred HH---h-cceEEEeCCCC--CCc-ccHHHHhHhCccccCC---CccHHHHHHHHHHcCCCchhh-cCCCCCCChhHHHHH
Q 022337 135 SL---R-RKVGMLFQIPA--LFE-GTVVDNIRYGPQLRGK---KLTENEVYKLLSLADLDSSFL-NKTGGEISVGQAQRV 203 (298)
Q Consensus 135 ~~---~-~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGqkQRv 203 (298)
+. | +.|+|+||+|. |-| .||.+.|.-....++. .+..+++.++++++|+++... +++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 33 3 57999999984 335 4887777654444331 234567889999999975433 469999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
.||+||+.+|++||+||||++||+..+.+++++|+++.++.|.++|+||||++.+.++||||+||++|+++|.|+++++.
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999985
Q ss_pred -ccCChHHHHHhhh
Q 022337 284 -EAKHPMALRFLQL 296 (298)
Q Consensus 284 -~~~~~~~~~~~~~ 296 (298)
++.|+|.+.+...
T Consensus 244 ~~p~hpYT~~Ll~a 257 (539)
T COG1123 244 SNPQHPYTRGLLAA 257 (539)
T ss_pred hccCCcccHHHHhh
Confidence 4578888776543
No 215
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.6e-51 Score=408.72 Aligned_cols=216 Identities=33% Similarity=0.557 Sum_probs=189.4
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++|++++|+++ +++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 469999999999643 5799999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCC----------chhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD----------SSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|+||++.+|+.|++||+.++.. ..+++++.++++..+++ +...++.+..||||||||++||||++
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGE----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred EEecCCcccccccHHHHHhccCC----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999986431 12345555555555442 13455667899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
++|++|||||||++||+.+++.+.+.|.++.+ .|+|+|++||+++.+ +.||+|++|++|++++.|+++++.
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLL-GCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999998853 389999999999977 569999999999999999988764
No 216
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.8e-52 Score=413.41 Aligned_cols=236 Identities=29% Similarity=0.454 Sum_probs=200.6
Q ss_pred CCCeEEEEeEEEEeCC----------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 60 QKPKFRVRELRKESDD----------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~----------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
..++++++|+++.|++ ++.+|+|+||+|++||++||+||||||||||+|+|+|++ |++|+|+++|+++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEcc
Confidence 3468999999999952 357999999999999999999999999999999999999 59999999999986
Q ss_pred CCCHH---HHhcceEEEeCCC--CCCc-ccHHHHhHhCccccC--CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhH
Q 022337 130 DLDVL---SLRRKVGMLFQIP--ALFE-GTVVDNIRYGPQLRG--KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQ 199 (298)
Q Consensus 130 ~~~~~---~~~~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 199 (298)
..+.. .+++++||+||++ .+++ .||.||+.++...+. .. ..++++.++++.+++.....++++.+|||||
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~ 430 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQ 430 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHH
Confidence 55432 2366799999997 3676 499999988643221 11 1235678899999996346789999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
||||+|||||+.+|++|||||||+|||+.+++.+++.|++++++.|+|||+||||++.+..+|||+++|++|++++.|++
T Consensus 431 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 510 (529)
T PRK15134 431 RQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999765589999999999999999999999999999999999
Q ss_pred hhhhc-cCChHHHHHhhh
Q 022337 280 DLLSE-AKHPMALRFLQL 296 (298)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~ 296 (298)
+++.+ +.+.+.+.+...
T Consensus 511 ~~~~~~~~~~~~~~~~~~ 528 (529)
T PRK15134 511 ERVFAAPQQEYTRQLLAL 528 (529)
T ss_pred HHHhcCCCChHHHHHhhc
Confidence 88754 345566666543
No 217
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-51 Score=377.25 Aligned_cols=231 Identities=37% Similarity=0.588 Sum_probs=194.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--C
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--D 132 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~ 132 (298)
..++|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... .
T Consensus 17 ~~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 17 DHSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 456899999999995 56799999999999999999999999999999999999863 699999999988532 2
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHHH
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
...+++.++|+||++.+|+.|+.||+.++....+.. ..++.+.++++.+++. .+..++++.+|||||||||+||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra 175 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARA 175 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHH
Confidence 334577899999999988779999998864322211 1234466778888863 135678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe---------CCEEEEeeCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV---------NGEIVEVLKP 279 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~---------~G~i~~~g~~ 279 (298)
|+.+|++|||||||+|||+.++..+.+.|.++++ +.|||++|||++.+.++|||+++|+ +|++++.|++
T Consensus 176 L~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 176 IAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 9999999999999999999999999999999864 6899999999999999999999998 8999999999
Q ss_pred hhhhc-cCChHHHHH
Q 022337 280 DLLSE-AKHPMALRF 293 (298)
Q Consensus 280 ~~~~~-~~~~~~~~~ 293 (298)
+++.. +.+.....|
T Consensus 254 ~~~~~~~~~~~~~~~ 268 (274)
T PRK14265 254 EQMFGSPQTKEAREY 268 (274)
T ss_pred HHHHhCCCCHHHHHH
Confidence 88754 334443444
No 218
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-51 Score=375.04 Aligned_cols=222 Identities=37% Similarity=0.574 Sum_probs=193.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-----ccEEEECCEeCCC--CCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-----~G~I~i~g~~i~~--~~~~ 134 (298)
++++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+..
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 4799999999995 457999999999999999999999999999999999999985 8999999998742 2334
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.+++.++|+||++.+|+.|++||+.++....+. . ...+++.++++.+++.+ +..++++.+||||||||++||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 567789999999998888999999875322221 1 12345778889998742 35678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC-----CEEEEeeChhhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-----GEIVEVLKPDLLS 283 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~-----G~i~~~g~~~~~~ 283 (298)
|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++|||++.+.++||++++|++ |++++.|+++++.
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 99999999999999999999999999999998654589999999999999999999999999 9999999999885
Q ss_pred c
Q 022337 284 E 284 (298)
Q Consensus 284 ~ 284 (298)
+
T Consensus 245 ~ 245 (261)
T PRK14258 245 N 245 (261)
T ss_pred h
Confidence 4
No 219
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-51 Score=371.51 Aligned_cols=221 Identities=39% Similarity=0.614 Sum_probs=189.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC--C---CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--P---PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--p---~~G~I~i~g~~i~~~--~~ 133 (298)
.++++++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 35799999999995 5679999999999999999999999999999999999975 5 599999999988532 23
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc---cHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL---TENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~---~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
..+++.++|+||++.+|+.|+++|+.++....+... .++++.+.++.+++. .+..++.+.+||||||||++|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 345678999999999888899999987643222111 124466778888763 13567889999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|+|++|||++.+.++||++++|++|++++.|++.++..
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999864 5899999999999999999999999999999999887754
No 220
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=5.9e-52 Score=372.00 Aligned_cols=213 Identities=39% Similarity=0.668 Sum_probs=181.9
Q ss_pred EEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 64 FRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 64 l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999953 246999999999999999999999999999999999999999999999999987666556677899
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHc-----------CCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLA-----------DLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|+||++.+++.|++||+.++.... ..++..+.++.. +++ ...++++.+|||||||||+|||||+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~ 155 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDA----TDEEVEEAAKKANIHDFIMSLPDGYD-TLVGERGSQLSGGQKQRIAIARALL 155 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCC----CHHHHHHHHHHcChHHHHHhhccccc-eeeccCCccCCHHHHHHHHHHHHHh
Confidence 999999888789999998864321 112222223322 332 2456778999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+|++|||||||+|||+.+++.+.+.|+++. + |+|||++||+++++. +||++++|++|++++.++.+++..
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQEALDRAM-K-GRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999999999985 3 899999999999996 899999999999999998877754
No 221
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-52 Score=359.77 Aligned_cols=219 Identities=31% Similarity=0.441 Sum_probs=199.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+.+|++++-. ++.+|+++||++++||++||+||||||||||||.|+|-+.|++|++.++|.++..++..++.++-+.
T Consensus 1 mi~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 689999999984 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC-CcccHHHHhHhCccccCC--Cc-cH-HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC------
Q 022337 143 LFQIPAL-FEGTVVDNIRYGPQLRGK--KL-TE-NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN------ 211 (298)
Q Consensus 143 v~Q~~~l-~~~tv~eni~~~~~~~~~--~~-~~-~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~------ 211 (298)
+||+..+ |+.||.|.+.+|...++. .. .+ +-++++|...++. .+..+...+|||||||||.+||+|++
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 9999986 889999999999654432 21 22 2378899999996 68999999999999999999999975
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++++|+||||||+||...+...+++.++++++ |..|+.|-||++.+..|||||++|++||+++.|+|++...
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred CCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 44599999999999999999999999999986 8999999999999999999999999999999999998765
No 222
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-51 Score=373.80 Aligned_cols=229 Identities=35% Similarity=0.565 Sum_probs=193.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~--~~~~ 134 (298)
++++++|++++|+ ++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++.. ....
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 4799999999995 56799999999999999999999999999999999999985 48999999998853 2334
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHH
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAra 208 (298)
.++++++|+||++.+|+.|++||+.++....+. . ...+.+.++++.+++.+ +..++++.+||||||||++||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 567789999999998888999999876432221 1 12345678888888731 35678899999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe-----CCEEEEeeChhhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-----NGEIVEVLKPDLLS 283 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~-----~G~i~~~g~~~~~~ 283 (298)
|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++.+..+||++++|+ +|++++.|+++++.
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 9999999999999999999999999999999864 5899999999999999999999998 59999999999875
Q ss_pred cc-CChHHHHH
Q 022337 284 EA-KHPMALRF 293 (298)
Q Consensus 284 ~~-~~~~~~~~ 293 (298)
+. .+.....|
T Consensus 243 ~~~~~~~~~~~ 253 (259)
T PRK14260 243 SNPLDSRTRDY 253 (259)
T ss_pred cCCCChHHHHh
Confidence 42 33343433
No 223
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2e-51 Score=444.98 Aligned_cols=218 Identities=33% Similarity=0.515 Sum_probs=195.5
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----------------------
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP----------------------- 116 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p----------------------- 116 (298)
..|+++||+|+|++ +.++|+|+||+|++|+++||+||||||||||+++|+|+|+|
T Consensus 1164 g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred ceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence 35999999999964 34799999999999999999999999999999999999999
Q ss_pred -------------------------------CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 117 -------------------------------PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 117 -------------------------------~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
++|+|++||.++++++...+|++||||+|+|.||++|++|||.++..
T Consensus 1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-- 1321 (1466)
T PTZ00265 1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-- 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC--
Confidence 69999999999999999999999999999999999999999999842
Q ss_pred CCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 166 GKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 166 ~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
..+++++.++++..++++. .....+..||||||||++|||||+++|+|||||||||+||+.+++.+.+
T Consensus 1322 --~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1322 --DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred --CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 3456788899998887531 2334567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC----CEEE-EeeChhhhhc
Q 022337 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN----GEIV-EVLKPDLLSE 284 (298)
Q Consensus 236 ~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~----G~i~-~~g~~~~~~~ 284 (298)
.|.++....++|+|+|||+++.+. .||+|++|++ |+++ +.|+++++..
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999885223899999999999986 5999999999 9955 8999999976
No 224
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-51 Score=373.15 Aligned_cols=231 Identities=39% Similarity=0.614 Sum_probs=196.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC------EeCCCCCH
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG------RDITDLDV 133 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g------~~i~~~~~ 133 (298)
.+|+++++|++++|+ ++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++| .++...+.
T Consensus 7 ~~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 7 AEDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hhhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 467899999999995 67899999999999999999999999999999999999999997776665 45544455
Q ss_pred HHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCC-Cc--cHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK-KL--TENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-~~--~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iA 206 (298)
..+++.++|+||++.+|+. |++||+.++....+. .. ..+++.++++.+++.. +..++.+..||+|||||++||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 165 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHH
Confidence 5667889999999998875 999999976432221 11 1245778899999852 356788999999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-c
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-A 285 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~ 285 (298)
|||+.+|+++||||||++||+.+++.+.+.|.++.+ +.|||++||+++.+..+||++++|++|++++.|+++++.. +
T Consensus 166 ral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~ 243 (257)
T PRK14246 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243 (257)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999999854 6899999999999999999999999999999999988754 3
Q ss_pred CChHHHHH
Q 022337 286 KHPMALRF 293 (298)
Q Consensus 286 ~~~~~~~~ 293 (298)
.+++.+.|
T Consensus 244 ~~~~~~~~ 251 (257)
T PRK14246 244 KNELTEKY 251 (257)
T ss_pred CcHHHHHH
Confidence 44565555
No 225
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.3e-51 Score=364.06 Aligned_cols=206 Identities=32% Similarity=0.551 Sum_probs=181.8
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 7899999999643 479999999999999999999999999999999999999999999999999877676677889999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHHHcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+||++.+++.|++||+.+... ...+++.++++.+++.+ .. ++++.+||+|||||++|||||+.
T Consensus 83 ~~q~~~l~~~tv~enl~~~~~-----~~~~~~~~~~~~~~l~~-~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~ 156 (221)
T cd03244 83 IPQDPVLFSGTIRSNLDPFGE-----YSDEELWQALERVGLKE-FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLR 156 (221)
T ss_pred ECCCCccccchHHHHhCcCCC-----CCHHHHHHHHHHhCcHH-HHHhcccccccccccCCCcCCHHHHHHHHHHHHHhc
Confidence 999999888899999975421 12445666777777642 33 46789999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
+|+++||||||++||+.+++.+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.|+
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 157 KSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999853 6899999999999975 99999999999988765
No 226
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-53 Score=360.15 Aligned_cols=221 Identities=32% Similarity=0.461 Sum_probs=205.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++|+| +++.+++++|++|++|.+++|||||||||||||.++++|+++++|+|+++|.++..++.+++.++++.
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 68999999999 46789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCc-ccHHHHhHhCcccc--CC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLR--GK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~--~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+-|+.++-. .||+|-+.||...+ |. .+++..+.++++.++|. ++.+++..+||||||||..||+.++++.++++
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvl 158 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVL 158 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcEEE
Confidence 999998765 59999999996433 22 23456689999999997 69999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
||||.++||-++...+|+.|++++++.|+||++|-||++++..|+|+|+-|++|+++..|+|+++.++
T Consensus 159 LDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred ecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999998653
No 227
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.3e-51 Score=443.71 Aligned_cols=216 Identities=30% Similarity=0.500 Sum_probs=196.3
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..|+++||+++|+++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.|||.|+.+++..++|++|
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 369999999999654 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
++|||+|.+|++|++|||.++. ..+++++.++++.+++.+. ...+.+..||||||||++|||||+
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~-----~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALL 1390 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFN-----EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALL 1390 (1622)
T ss_pred EEECCCCccccccHHHHhCcCC-----CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998653 2356788899998887531 223346689999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|+|||||||||+||+.+.+.+.+.|++..+ ++|+|+|+|+++.+.. ||||+||++|+|++.|+++++.+.
T Consensus 1391 r~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~--~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt~~eLl~~ 1462 (1622)
T PLN03130 1391 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSN 1462 (1622)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999998754 8999999999999976 899999999999999999998764
No 228
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.3e-51 Score=364.44 Aligned_cols=208 Identities=31% Similarity=0.510 Sum_probs=182.9
Q ss_pred EEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHh
Q 022337 64 FRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLR 137 (298)
Q Consensus 64 l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~---~~~ 137 (298)
++++|+++.|+++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999532 5699999999999999999999999999999999999999999999999998655432 356
Q ss_pred cceEEEeCCCCCCc-ccHHHHhHhCccccC-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 138 RKVGMLFQIPALFE-GTVVDNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+.++|+||++.+|+ .|+.||+.++..... .. ...+++.++++.+++. +..++++.+||+|||||++|||||+.+|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 78999999999887 599999997643321 11 1234688899999996 5788999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
++|||||||+|||+.+++.+.+.|+++.++.++|+|++|||++.. ++||++++|++|++
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999999998765589999999999854 79999999999986
No 229
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-50 Score=369.75 Aligned_cols=230 Identities=36% Similarity=0.534 Sum_probs=195.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~--~~ 133 (298)
++.+.+++++++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++... ..
T Consensus 6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 45689999999994 56899999999999999999999999999999999999987 799999999998542 22
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC-ccHHHHHHHHHHcCCCch---hhcCCCCCCChhHHHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK-LTENEVYKLLSLADLDSS---FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkQRv~iAral 209 (298)
..+++.++|+||++.+|..|+.||+.++....... ...+++.++++.+++... ..++++.+|||||+||++|||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral 164 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI 164 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 34567899999999988789999999875332211 223568889999998532 34577889999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe--------CCEEEEeeChhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV--------NGEIVEVLKPDL 281 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~--------~G~i~~~g~~~~ 281 (298)
+.+|++|||||||+|||+.++..+.+.|+++. + +.|+|++||+++.+.++|||+++|+ +|++++.|++++
T Consensus 165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~ 242 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQ 242 (261)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHH
Confidence 99999999999999999999999999999985 3 7899999999999999999999996 899999999988
Q ss_pred hhcc-CChHHHHH
Q 022337 282 LSEA-KHPMALRF 293 (298)
Q Consensus 282 ~~~~-~~~~~~~~ 293 (298)
+.+. .++..+.|
T Consensus 243 ~~~~~~~~~~~~~ 255 (261)
T PRK14263 243 IFQNPREQLTSDY 255 (261)
T ss_pred HHhCCCcHHHHHH
Confidence 7542 33344433
No 230
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=5.5e-51 Score=368.67 Aligned_cols=220 Identities=29% Similarity=0.450 Sum_probs=188.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+++++++|+++.|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|+++|.++...+....++
T Consensus 5 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 45799999999995 45799999999999999999999999999999999998 6899999999999987665444333
Q ss_pred -ceEEEeCCCCCCcc-cHHHHhHhCcccc----CCC-c----cHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHHH
Q 022337 139 -KVGMLFQIPALFEG-TVVDNIRYGPQLR----GKK-L----TENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVALA 206 (298)
Q Consensus 139 -~ig~v~Q~~~l~~~-tv~eni~~~~~~~----~~~-~----~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~iA 206 (298)
.++|+||++.+++. |+.+|+.+..... ... . ..+++.++++.+++.+...++++. +|||||||||+||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 48999999998875 9999988653211 100 0 124567889999996346778887 5999999999999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhhh
Q 022337 207 RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|||+.+|++|||||||+|||+.+++.+.+.|+++++ .|.|||++|||++.+..+ ||++++|++|++++.|+++..
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999999875 489999999999999876 899999999999999988743
No 231
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-51 Score=373.95 Aligned_cols=216 Identities=26% Similarity=0.387 Sum_probs=185.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...++.++
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 369999999999645679999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEeCCCCC---CcccHHHHhHhCccc----cCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 142 MLFQIPAL---FEGTVVDNIRYGPQL----RGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 142 ~v~Q~~~l---~~~tv~eni~~~~~~----~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+||++.+ ++.++.+|+.++... ... ....+++.++++.+++. +..++++.+||||||||++|||||+.+
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~ 160 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQ 160 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999865 234789998764210 011 11234577889999996 578899999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|++|||||||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||+++++ +|++++.|+++++.
T Consensus 161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 161 GQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999754 899999999999999999999877 89999999988764
No 232
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-50 Score=369.06 Aligned_cols=231 Identities=35% Similarity=0.573 Sum_probs=195.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCC----
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD---- 130 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~---- 130 (298)
..++|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 13 ~~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 13 TQQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CCceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 356799999999995 56799999999999999999999999999999999999985 79999999987642
Q ss_pred CCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC---ccHHHHHHHHHHcCCC---chhhcCCCCCCChhHHHHHH
Q 022337 131 LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK---LTENEVYKLLSLADLD---SSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 131 ~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~l~~~~l~---~~~~~~~~~~LSgGqkQRv~ 204 (298)
.....+++.++|+||++.+|+.|++||+.++....+.. ..++++.++++.+++. .+..++.+.+||||||||++
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~ 171 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC 171 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence 22345677899999999988889999998764322211 1235577788888773 13567889999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+.+|+++||||||+|||+.+++.+.+.|+++++ +.|||+|||+++++..+|||+++|++|++++.|+.+++..
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI 249 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999864 6899999999999999999999999999999999988753
Q ss_pred -cCChHHHHH
Q 022337 285 -AKHPMALRF 293 (298)
Q Consensus 285 -~~~~~~~~~ 293 (298)
+.+++.+.|
T Consensus 250 ~~~~~~~~~~ 259 (265)
T PRK14252 250 KPKNKQTEDY 259 (265)
T ss_pred CCCCHHHHHH
Confidence 334444444
No 233
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=366.13 Aligned_cols=228 Identities=44% Similarity=0.689 Sum_probs=193.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--CHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDL--DVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~--~~~~ 135 (298)
+++++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... +...
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 589999999995 5679999999999999999999999999999999999974 4899999999998642 2345
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCC-C--ccHHHHHHHHHHcCCCc---hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK-K--LTENEVYKLLSLADLDS---SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~-~--~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++++++|+||++.+|+.|+.||+.++....+. . ..++++.++++.+++.+ ...++++.+||||||||++|||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 67889999999998888999999876432221 1 12345778889988742 346788999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CCh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHP 288 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~ 288 (298)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++.+..+||++++|++|++++.|+++++.+. .++
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~~~ 239 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDK 239 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCCCh
Confidence 999999999999999999999999999999853 78999999999999999999999999999999999887533 334
Q ss_pred HHHHH
Q 022337 289 MALRF 293 (298)
Q Consensus 289 ~~~~~ 293 (298)
....|
T Consensus 240 ~~~~~ 244 (250)
T PRK14266 240 RTEDY 244 (250)
T ss_pred HHHHH
Confidence 43334
No 234
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-51 Score=414.01 Aligned_cols=224 Identities=28% Similarity=0.397 Sum_probs=192.9
Q ss_pred CCeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--------
Q 022337 61 KPKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-------- 129 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~-------- 129 (298)
+++|+++|+++.|++ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 468999999999953 236999999999999999999999999999999999999999999999997542
Q ss_pred --CCCHH---HHh-cceEEEeCCC--CCCc-ccHHHHhHhCcccc-CCC--ccHHHHHHHHHHcCCCc--hhhcCCCCCC
Q 022337 130 --DLDVL---SLR-RKVGMLFQIP--ALFE-GTVVDNIRYGPQLR-GKK--LTENEVYKLLSLADLDS--SFLNKTGGEI 195 (298)
Q Consensus 130 --~~~~~---~~~-~~ig~v~Q~~--~l~~-~tv~eni~~~~~~~-~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~L 195 (298)
..+.. .+| +.||||||++ .+++ .||.||+.++...+ +.. ...+++.++++.+|+.+ +..++++.+|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 11222 233 4799999998 5777 59999999875432 222 12356888999999952 3578999999
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
||||||||+|||||+.+|++|||||||++||+.+++++.++|++++++.|+|||+||||++.+..+||||++|++|++++
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~~ 249 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeecc
Confidence 99999999999999999999999999999999999999999999976668999999999999999999999999999999
Q ss_pred eeChhhhhc
Q 022337 276 VLKPDLLSE 284 (298)
Q Consensus 276 ~g~~~~~~~ 284 (298)
.|+++++..
T Consensus 250 ~g~~~~~~~ 258 (623)
T PRK10261 250 TGSVEQIFH 258 (623)
T ss_pred cCCHHHhhc
Confidence 999887743
No 235
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=2.5e-51 Score=365.24 Aligned_cols=210 Identities=33% Similarity=0.526 Sum_probs=180.7
Q ss_pred CCCeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 60 QKPKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
..++++++|++++|++. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45689999999999642 3699999999999999999999999999999999999999999999999988665555567
Q ss_pred cceEEEeCCCCCCcccHHHHhHhCccccCCCc-cH----HHHHHHHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL-TE----NEVYKLLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~-~~----~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+.++|+||++.+|+.|++||+.++........ .+ ..+.+.++.+ |+. +..++++.+|||||||||+|||||+
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCCcCCHHHHHHHHHHHHHh
Confidence 78999999998888899999987643211100 00 1245667777 775 4678889999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|++|||++++. .||++++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999854 589999999999996 5999999999974
No 236
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.8e-51 Score=357.35 Aligned_cols=202 Identities=32% Similarity=0.512 Sum_probs=177.1
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++|++++|++. ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++++.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 469999999999642 4799999999999999999999999999999999999999999999999998766666677889
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+|+||++.+|+.|++||+.+... ...+++.+.++ .++++.+|||||+||++|||||+.+|+++||||
T Consensus 85 ~~v~q~~~~~~~tv~~~l~~~~~-----~~~~~~~~~l~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDE 151 (207)
T cd03369 85 TIIPQDPTLFSGTIRSNLDPFDE-----YSDEEIYGALR--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDE 151 (207)
T ss_pred EEEecCCcccCccHHHHhcccCC-----CCHHHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 99999999888899999975321 12333444444 246788999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
||++||+.+++.+.+.|+++. + |.|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 152 P~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 152 ATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999984 3 8999999999999875 999999999999887753
No 237
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-50 Score=440.52 Aligned_cols=217 Identities=27% Similarity=0.469 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..|+++||+++|+++ +++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 359999999999644 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
++|||+|.+|++|++|||.++. ..+++++.++++.+++.+. ...+.+..||||||||++|||||+
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~-----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALL 1387 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFS-----EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALL 1387 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCC-----CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998652 2456788889998887531 223446789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
++|+|||||||||+||+.+.+.+.+.|++..+ ++|+|+|+|+++.+.+ ||||+||++|+|++.|+++++.+..
T Consensus 1388 r~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt~~eLl~~~ 1460 (1495)
T PLN03232 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFK--SCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRD 1460 (1495)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999998753 7999999999999976 9999999999999999999987644
No 238
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.5e-51 Score=405.12 Aligned_cols=224 Identities=28% Similarity=0.449 Sum_probs=192.1
Q ss_pred CCeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCCC
Q 022337 61 KPKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDLD 132 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~~ 132 (298)
+++++++|+++.|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++...+
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 458999999999953 24799999999999999999999999999999999999987 7999999999987654
Q ss_pred HHH---Hh-cceEEEeCCCC--CCc-ccHHHHhHhCccc-cCCC--ccHHHHHHHHHHcCCCc--hhhcCCCCCCChhHH
Q 022337 133 VLS---LR-RKVGMLFQIPA--LFE-GTVVDNIRYGPQL-RGKK--LTENEVYKLLSLADLDS--SFLNKTGGEISVGQA 200 (298)
Q Consensus 133 ~~~---~~-~~ig~v~Q~~~--l~~-~tv~eni~~~~~~-~~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqk 200 (298)
... .+ +++||+||++. +++ .++.+|+.+.... .+.. ...+++.++++.+++.+ ...++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 332 33 57999999985 555 4999998754221 1211 22456889999999963 246889999999999
Q ss_pred HHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChh
Q 022337 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 201 QRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~ 280 (298)
|||+|||||+.+|++|||||||++||+.+++.++++|++++++.|+|||+||||++.+..+||||++|++|++++.|+++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 242 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAA 242 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999997655899999999999999999999999999999999988
Q ss_pred hhhc
Q 022337 281 LLSE 284 (298)
Q Consensus 281 ~~~~ 284 (298)
++..
T Consensus 243 ~~~~ 246 (529)
T PRK15134 243 TLFS 246 (529)
T ss_pred HHhh
Confidence 7743
No 239
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-50 Score=375.74 Aligned_cols=221 Identities=42% Similarity=0.666 Sum_probs=191.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--CH
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDL--DV 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-----p~~G~I~i~g~~i~~~--~~ 133 (298)
+++|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 43 ~~~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 43 DAKLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CceEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 45799999999995 4679999999999999999999999999999999999986 6899999999988542 33
Q ss_pred HHHhcceEEEeCCCCCCcccHHHHhHhCcccc------------CCC---ccHHHHHHHHHHcCCCc---hhhcCCCCCC
Q 022337 134 LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR------------GKK---LTENEVYKLLSLADLDS---SFLNKTGGEI 195 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~------------~~~---~~~~~~~~~l~~~~l~~---~~~~~~~~~L 195 (298)
..+++.++|+||++.+|+.|++||+.++.... +.. ..++++.++++.+++.. +..++++.+|
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 201 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL 201 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC
Confidence 45677899999999988889999999764211 111 11345778889888842 3567889999
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEE-EEEeCCEEE
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV-CLLVNGEIV 274 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v-~vl~~G~i~ 274 (298)
||||||||+|||||+++|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++.+..+||++ ++|++|+++
T Consensus 202 SgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 99999999999999999999999999999999999999999999965 489999999999999999996 578999999
Q ss_pred EeeChhhhhc
Q 022337 275 EVLKPDLLSE 284 (298)
Q Consensus 275 ~~g~~~~~~~ 284 (298)
+.|+++++..
T Consensus 280 ~~g~~~~~~~ 289 (305)
T PRK14264 280 EYDDTDKIFE 289 (305)
T ss_pred EeCCHHHHHh
Confidence 9999988754
No 240
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.5e-51 Score=363.42 Aligned_cols=210 Identities=30% Similarity=0.424 Sum_probs=182.6
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHH
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE---PPSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 136 (298)
.+.++|++++|.+. +++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++. ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~ 79 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQF 79 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHh
Confidence 46799999999654 579999999999999999999999999999999999999 99999999999874 2356
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCC---Cc--cHHHHHH-HHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK---KL--TENEVYK-LLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~---~~--~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++.++|+||++.+|+. |++||+.++...... .. ...++.+ .++.+++. ++.++.+.+|||||+||++|||||
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-hhhcccccCcCHHHHHHHHHHHHH
Confidence 7789999999998885 999999976432211 11 1123445 78889986 567889999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH-HHHHhhcCEEEEEeCCEEEEee
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~-~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+.+|++|||||||+|||+.++..+.+.|++++++ |.|+|++||++ +.+..+||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998754 89999999998 5888999999999999998754
No 241
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.1e-51 Score=366.94 Aligned_cols=204 Identities=31% Similarity=0.502 Sum_probs=175.5
Q ss_pred EEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe-CCCCC
Q 022337 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF-QIPAL 149 (298)
Q Consensus 71 ~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~-Q~~~l 149 (298)
+.| +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ...++++++|++ |++.+
T Consensus 29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCcccc
Confidence 344 345799999999999999999999999999999999999999999999999986542 234567899998 55667
Q ss_pred Cc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCC
Q 022337 150 FE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 150 ~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD 226 (298)
++ .|++||+.+....++... ..+++.++++.++++ +..++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 65 599999987543332211 234567889999996 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+.+++.+.+.|++++++.+.|||++||+++++..+||++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999997655899999999999999999999999999998653
No 242
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-50 Score=400.48 Aligned_cols=215 Identities=27% Similarity=0.450 Sum_probs=189.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~i 140 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ..+++++
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5899999999995 5679999999999999999999999999999999999999999999999999865443 3456789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcc--ccC-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQ--LRG-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~--~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
||+||++.+++. |+.||+.++.. ..+ .. ...+++.++++.+++. ...++++.+|||||||||+|||||+.+|+
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNAR 160 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999988875 99999998642 111 11 1235678899999996 46788999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
+|||||||++||+.+++.+.+.|++++++ |+|||+||||++.+..+|||+++|++|+++..++.
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 161 VIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999754 89999999999999999999999999999876653
No 243
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=7.1e-51 Score=401.71 Aligned_cols=218 Identities=25% Similarity=0.470 Sum_probs=189.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHH-Hhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLS-LRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~-~~~~ 139 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+... .++.
T Consensus 1 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 478999999995 56799999999999999999999999999999999999987 7999999999987665433 3567
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcccc--C--CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLR--G--KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~--~--~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+||+||++.+++. |+.||+.++.... + .. ...+++.++++.+++.....++++.+|||||||||+|||||+.+
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~ 159 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhC
Confidence 9999999988874 9999999875321 1 11 12346788999999963223577999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|++|||||||+|||+.+++.+.+.|++++++ |.|||+||||++.+..+||++++|++|+++..++++++
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999754 89999999999999999999999999999998877654
No 244
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.6e-50 Score=400.00 Aligned_cols=200 Identities=35% Similarity=0.576 Sum_probs=179.2
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..++++||+|+|+++ +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||.++.+++..++|+++
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 369999999999754 3799999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||+|++.+|++|++||+.++.. ..+++++.++++.+++.+ ....+.+.+||||||||++|||||+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~----~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARP----DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCC----CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999998632 234577888888888752 1233456789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
++|+++|||||||+||+.+++.+++.|.++.+ ++|+|+|||+++.+. .||+|++|
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQ--GRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcC--CCEEEEEecCHHHHH-hCCEEEeC
Confidence 99999999999999999999999999998853 899999999999885 69999875
No 245
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-52 Score=364.15 Aligned_cols=215 Identities=27% Similarity=0.525 Sum_probs=198.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++++|+|+| +++.|++|+||++++|++.|++|||||||||.+|+|+|++.|++|+|.|+|.++.. ..+.+|||
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGY 76 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhccc
Confidence 58999999999 57889999999999999999999999999999999999999999999999998753 34678999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCcc--HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLT--ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|.+..||+. ||.|.+.|.+.+++.+.. ..++..+|+++++. ....+++.+||.|++|++.+..|++++|+++|||
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 9999999985 999999998888877543 45688899999997 4688999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||||.+.+.+.+.+.+++++ |+|||++||.|+.++++||+++.|++|+.|..|+.+++..
T Consensus 156 EPFSGLDPVN~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 156 EPFSGLDPVNVELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred CCccCCChhhHHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999765 9999999999999999999999999999999999988754
No 246
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=5.1e-51 Score=357.95 Aligned_cols=199 Identities=37% Similarity=0.526 Sum_probs=173.5
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHHhcceE
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSLRRKVG 141 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~~~~ig 141 (298)
++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++. ...++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 468999995 5679999999999999999999999999999999999999999999999999654321 23467899
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|++|++.+|+ .|++||+.++....+.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999887 59999999864322221 1245678899999996 578899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
||||+|||+.+++.+.+.|+++.++ |.|+|++||+++.+ .+||++++|
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 159 DEPTGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred eCCcCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEeC
Confidence 9999999999999999999998764 89999999999976 589999875
No 247
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.5e-50 Score=401.68 Aligned_cols=187 Identities=38% Similarity=0.623 Sum_probs=168.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++||+|+|++++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.++ ..++|++|+
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheE
Confidence 3599999999997656799999999999999999999999999999999999999999999999999999 889999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
||||+|.+|++|++|||.++.. ..+++++.++++.+++++. ...+.+..||||||||++|||||++
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRP----DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred EEccCcccccccHHHHHhccCC----CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999732 2456788899999888532 1223466899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
+|++||||||||+||+.+++.+.+.|.++.+ ++|+|+|||++
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~--~~TvIiItHrl 529 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALS--GKTVVVITHHL 529 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEecCC
Confidence 9999999999999999999999999998743 79999999984
No 248
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3.5e-50 Score=365.21 Aligned_cols=216 Identities=30% Similarity=0.489 Sum_probs=185.4
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.+.++++|++++|++. +.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+++...+...+++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 4579999999999642 479999999999999999999999999999999999999999999999999877776677888
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHH---------Hc--CCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLS---------LA--DLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
++|+||++.+|+.|++||+..... ...+++.++++ .+ +++ ...++.+.+||+|||||++||||
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~l~-~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECK-----CTDDRLWEALEIAQLKNMVKSLPGGLD-AVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCC-----CCHHHHHHHHHHhCcHHHHhhcccccC-cEeccCCCcCCHHHHHHHHHHHH
Confidence 999999999888899999865321 11222333333 33 443 24456678999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
|+.+|++|||||||+|||+.+++.+++.++++. + +.|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQKVVMTAF-A-DRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-C-CCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHhc
Confidence 999999999999999999999999999999874 3 8999999999999975 999999999999999999887654
No 249
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-50 Score=355.99 Aligned_cols=201 Identities=26% Similarity=0.409 Sum_probs=178.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++++++|
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 589999999995 567999999999999999999999999999999999999999999999999986543 345678999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+++ .|+.||+.++...++. ...+++.++++.+|+. +..++++.+||||||||++|||||+++|+++|||||
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGP-GDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCc-cHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999998887 4999999886533221 2346788899999996 578899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
|++||+.+++.+.+.|++++++ |.|||++|||++++..+.+|++++
T Consensus 157 t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQHAEQ-GGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CccCCHHHHHHHHHHHHHHHHC-CCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999998754 899999999999998877888776
No 250
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-51 Score=365.63 Aligned_cols=202 Identities=35% Similarity=0.561 Sum_probs=184.7
Q ss_pred CCeEEEEeEEEEeCCC--------CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q 022337 61 KPKFRVRELRKESDDG--------APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~--------~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~ 132 (298)
.++++++|++++|.-+ ..+++||||+|++||++||||+||||||||-|+|+||++|++|+|+++|+++..++
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS 81 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc
Confidence 3579999999999532 26999999999999999999999999999999999999999999999999976543
Q ss_pred HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 133 VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 133 ~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
.....+++.++|+.+|+.++..+++|++|||||+||++|||||+.+
T Consensus 82 ----------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 82 ----------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred ----------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 1223567999999999988889999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh-ccCChHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAKHPMAL 291 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~-~~~~~~~~ 291 (298)
|+++++|||+|+||...+.++.++|.++.++.|.|.++||||++.+..+||||.||..|+|++.|+.+++. ++.|+|++
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk 207 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTK 207 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999998875 56788988
Q ss_pred HHhhh
Q 022337 292 RFLQL 296 (298)
Q Consensus 292 ~~~~~ 296 (298)
.++..
T Consensus 208 ~Ll~a 212 (268)
T COG4608 208 ALLSA 212 (268)
T ss_pred HHHHh
Confidence 87664
No 251
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-50 Score=401.11 Aligned_cols=224 Identities=31% Similarity=0.525 Sum_probs=190.5
Q ss_pred CCCeEEEEeEEEEeCC----CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC-CEe---CCCC
Q 022337 60 QKPKFRVRELRKESDD----GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD-GRD---ITDL 131 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~----~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~-g~~---i~~~ 131 (298)
..++++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +...
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 3568999999999942 2469999999999999999999999999999999999999999999996 643 3222
Q ss_pred C---HHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCC-CccHHHHHHHHHHcCCCc----hhhcCCCCCCChhHHHH
Q 022337 132 D---VLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK-KLTENEVYKLLSLADLDS----SFLNKTGGEISVGQAQR 202 (298)
Q Consensus 132 ~---~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-~~~~~~~~~~l~~~~l~~----~~~~~~~~~LSgGqkQR 202 (298)
+ ...+++++||+||++.+++. ||.||+.++...... ...++++.++++.+++.. ++.++++.+||||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 2 12345679999999988874 999999865321111 112346788999999963 25789999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|+|||||+.+|++|||||||+|||+.+++.+++.|++++++.|.|||+||||++.+..+|||+++|++|++++.|+++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999766689999999999999999999999999999999988765
Q ss_pred h
Q 022337 283 S 283 (298)
Q Consensus 283 ~ 283 (298)
.
T Consensus 516 ~ 516 (520)
T TIGR03269 516 V 516 (520)
T ss_pred H
Confidence 4
No 252
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.3e-50 Score=356.87 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=180.0
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+++++++|++++|+ ++.+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ..++.+
T Consensus 9 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 9 PPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred cceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 46899999999995 56799999999999999999999999999999999999999999999999988642 335679
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|++|++.+++. |++||+.+....++. ..++.+.++++.+++. +..++++.+||||||||++||||++.+|++||||
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGR-RAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD 162 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCC-cHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999988875 999999875433222 2345577889999996 5678999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
|||++||+.+++.+.+.|+++.++ |.|+|++|||++++.++||++++++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 163 EPYANLDLEGITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999998764 89999999999999999999999863
No 253
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-50 Score=401.12 Aligned_cols=222 Identities=21% Similarity=0.347 Sum_probs=191.3
Q ss_pred CCeEEEEeEEEEeC--CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCccEEEECCEeCCCCCH-HHH
Q 022337 61 KPKFRVRELRKESD--DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLDGRDITDLDV-LSL 136 (298)
Q Consensus 61 ~~~l~~~~l~~~y~--~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p~~G~I~i~g~~i~~~~~-~~~ 136 (298)
.++++++|+++.|+ +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++...+. ...
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 45899999999984 23579999999999999999999999999999999999999 599999999999864433 334
Q ss_pred hcceEEEeCCC---CCCc-ccHHHHhHhCcc--ccC---CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 137 RRKVGMLFQIP---ALFE-GTVVDNIRYGPQ--LRG---KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 137 ~~~ig~v~Q~~---~l~~-~tv~eni~~~~~--~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
++.++|+||++ .+++ .|+.||+.++.. ... .. ...+++.++++.+++..+..++++.+|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 66799999996 3665 599999987631 111 11 1234578899999995335789999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||||+.+|++|||||||+|||+.+++.++++|.+++++ |+|||++|||++++.++|||+++|++|+++..++++++.
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999999999999999999999999999765 999999999999999999999999999999999887763
No 254
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.1e-50 Score=362.74 Aligned_cols=197 Identities=36% Similarity=0.534 Sum_probs=173.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHh
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNI 158 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni 158 (298)
|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+|+||++.+++ .|+.||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999865432 2489999999887 5999999
Q ss_pred HhCcc--ccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHH
Q 022337 159 RYGPQ--LRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 159 ~~~~~--~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~ 234 (298)
.++.. ..... ...+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+|||+.+++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 154 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ 154 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence 87532 11111 1234578899999996 5788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 235 ~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+.|.+++++.|+|||++|||++.+..+||++++|++|++++.|++.++
T Consensus 155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 155 EELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999998765589999999999999999999999999999988876544
No 255
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.1e-50 Score=364.96 Aligned_cols=212 Identities=26% Similarity=0.386 Sum_probs=184.9
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF 144 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~ 144 (298)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|+++...+...+++.++|+|
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEec
Confidence 57788874 27999999999999999999999999999999999985 5999999999987766666677899999
Q ss_pred CCCCCCc-ccHHHHhHhCccccCC-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC-------CCCe
Q 022337 145 QIPALFE-GTVVDNIRYGPQLRGK-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN-------EPEV 215 (298)
Q Consensus 145 Q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~-------~p~i 215 (298)
|++.+++ .|+++|+.++...... ....+++.++++.+++. +..++++.+||||||||++|||||+. +|++
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l 154 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL 154 (248)
T ss_pred ccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE
Confidence 9987654 6999999986422111 11245678899999996 57789999999999999999999997 6799
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||||+|||+.+++.+.++|++++++ |.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 155 lllDEPt~~LD~~~~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 155 LLLDEPMNSLDVAQQAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999999999999999998754 8999999999999999999999999999999999887643
No 256
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.2e-50 Score=399.11 Aligned_cols=212 Identities=23% Similarity=0.307 Sum_probs=188.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.+||
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 699999999995 5579999999999999999999999999999999999999999999999988765555555677999
Q ss_pred EeCCCCC--C-------cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 143 LFQIPAL--F-------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 143 v~Q~~~l--~-------~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+||++.+ + ..|+++|+.++. ..++++.++++.+++. ++.++++.+|||||||||+|||||+.+|
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV------KDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch------hHHHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9998753 1 348888875431 2345688999999996 5789999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
++|||||||+|||+.+++.+.+.|++++++ |+|||++|||++.+.++||++++|++|+++..|+++++.
T Consensus 155 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 155 DLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999765 899999999999999999999999999999999887754
No 257
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=7.4e-50 Score=435.69 Aligned_cols=217 Identities=29% Similarity=0.445 Sum_probs=195.3
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..|+++||+++|+++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 459999999999654 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
++|||+|.+|++|+++||... + ..+++++.++++.+++.+. .....+..||||||||++|||||+
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~----~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPF----S-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred eEECCCCcccCccHHHHcCcc----c-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999732 1 2456778889998887521 223445789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
++|+|||||||||+||+.+.+.+.+.|++..+ ++|+|+|+|+++.+.. ||||+||++|+|++.|+++++.+..
T Consensus 1438 r~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~--~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~G~~~eLl~~~ 1510 (1522)
T TIGR00957 1438 RKTKILVLDEATAAVDLETDNLIQSTIRTQFE--DCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEFGAPSNLLQQR 1510 (1522)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999998754 7999999999999976 8999999999999999999987643
No 258
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-50 Score=398.90 Aligned_cols=214 Identities=25% Similarity=0.429 Sum_probs=188.2
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcceEEEe
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRKVGMLF 144 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ig~v~ 144 (298)
++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+++.++|+|
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 368999995 56799999999999999999999999999999999999999999999999998655433 3467899999
Q ss_pred CCCCCCc-ccHHHHhHhCcc-ccCC--Cc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 145 QIPALFE-GTVVDNIRYGPQ-LRGK--KL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 145 Q~~~l~~-~tv~eni~~~~~-~~~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|++.+++ .||+||+.++.. ..+. .. ..+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9998776 599999997642 1111 11 134578899999996 467889999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||||+|||+.+++.+.+.|++++++ |.|||++|||++++..+||++++|++|++++.++++++
T Consensus 159 DEPt~~LD~~~~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 159 DEPTSSLTEKEVNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999998754 89999999999999999999999999999999987765
No 259
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.2e-50 Score=363.85 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=181.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| +..++
T Consensus 3 ~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 3 SLVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred cEEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4799999999995 56799999999999999999999999999999999999999999999986 23699
Q ss_pred EEeCCCCCCc---ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFE---GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
|+||++.+++ .|+.+|+.+.. ....+++.++++.+++. +..++++.+||||||||++|||||+.+|++|||
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 144 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRP-----GTKKEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144 (251)
T ss_pred EeccccccccccChhHHHHHhccc-----cccHHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987764 37888876532 11345678899999996 578899999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||+|||+.++..+++.|+++.++.|.|||++|||++.+..+||++++|++ ++++.|+++++..
T Consensus 145 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 9999999999999999999998765589999999999999999999999965 7999999887643
No 260
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3e-50 Score=359.68 Aligned_cols=204 Identities=29% Similarity=0.418 Sum_probs=177.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHHHHhcceEEEeCCCC--CCc-
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP----PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA--LFE- 151 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p----~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~--l~~- 151 (298)
+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|+++|+++... ...++.++|++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999988543 222357999999985 444
Q ss_pred ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCc--hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCH
Q 022337 152 GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDS--SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227 (298)
Q Consensus 152 ~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~ 227 (298)
.|+.+|+.+.....+.. ...+++.++++.+++++ +..++.+.+|||||||||+|||||+.+|++|||||||+|||+
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~ 158 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDV 158 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 49999987653222211 12356888999999962 467889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.++..+.+.|++++++.|+|||++||+++.+..+||++++|++|++++.|+++++..
T Consensus 159 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 159 VNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999976558999999999999999999999999999999999988754
No 261
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=4.8e-50 Score=361.55 Aligned_cols=218 Identities=26% Similarity=0.381 Sum_probs=182.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHHh-cc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLSLR-RK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~~~-~~ 139 (298)
|++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+....+ +.
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 589999999995 567999999999999999999999999999999999995 69999999999988766554443 57
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcc---cc-CC---C--ccHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQ---LR-GK---K--LTENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~---~~-~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~iAra 208 (298)
++|++|++.+++. +..+++.+... .. .. . ...+.+.+.++.+++++.+.++.+. +|||||||||+||||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lara 159 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 159 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHH
Confidence 9999999987764 66665543211 00 00 0 0134567788999996446667775 799999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhhh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|+++|++|||||||++||+.+++.+.+.|+++++ .|+|||++|||++.+..+ ||++++|++|++++.|+++..
T Consensus 160 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 160 AVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999865 489999999999999887 899999999999999987744
No 262
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=2.7e-50 Score=345.25 Aligned_cols=172 Identities=39% Similarity=0.612 Sum_probs=159.8
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|+++ .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999642 469999999999999999999999999999999999999999999999999877776677788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
++|++.+|+.|++||+ ||||||||++|||||+.+|++|||||||
T Consensus 81 ~~q~~~~~~~tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt 124 (173)
T cd03246 81 LPQDDELFSGSIAENI------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPN 124 (173)
T ss_pred ECCCCccccCcHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 9999988888999997 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
++||+.++..+++.|++++++ |+|+|++|||++.+ .+||++++|++|++
T Consensus 125 ~~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 125 SHLDVEGERALNQAIAALKAA-GATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred cccCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 999999999999999998754 89999999999988 57999999999974
No 263
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.3e-50 Score=357.55 Aligned_cols=205 Identities=26% Similarity=0.423 Sum_probs=174.5
Q ss_pred eEEEEeEEEEeCC------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC--CE--eCCCCC
Q 022337 63 KFRVRELRKESDD------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD--GR--DITDLD 132 (298)
Q Consensus 63 ~l~~~~l~~~y~~------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~--g~--~i~~~~ 132 (298)
|++++|++++|++ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++...+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5899999999952 1369999999999999999999999999999999999999999999998 43 554444
Q ss_pred HHH---H-hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 133 VLS---L-RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 133 ~~~---~-~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
... + ++.++|+||++.+++. |+.||+.+.....+.. ...+++.++++.+++.+.+.++++.+||||||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 332 2 4579999999988874 9999998753322221 1235678899999996435578899999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
||||+.+|++|||||||++||+.+++.+.+.|++++++ |+|||++||+++.+..+||+++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999998654 899999999999999999999876
No 264
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.8e-49 Score=432.36 Aligned_cols=215 Identities=29% Similarity=0.470 Sum_probs=194.5
Q ss_pred eEEEEeEEEEeCCCC-cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~-~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.|+++||+++|+++. ++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+++..++|++||
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 599999999997554 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
||||+|.+|++||++||.... ..+++++.++++.+++++. .....+..||||||||++|||||++
T Consensus 1388 iVpQdp~LF~gTIreNIdp~~-----~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1388 MIPQDPVLFDGTVRQNVDPFL-----EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred EECCCCccccccHHHHhCccc-----CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999996431 2456889999999988532 1223457899999999999999999
Q ss_pred C-CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 E-PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~-p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+ |+|||||||||+||+.+.+.+.+.|++..+ ++|+|+|+|+++.+.. ||+|+||++|+|++.|+++++...
T Consensus 1463 ~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1463 KGSGFILMDEATANIDPALDRQIQATVMSAFS--AYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC--CCEEEEEeccHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 6 899999999999999999999999998754 7999999999999965 999999999999999999998753
No 265
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2e-50 Score=400.32 Aligned_cols=218 Identities=33% Similarity=0.540 Sum_probs=186.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEEC-----------------
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLD----------------- 124 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~----------------- 124 (298)
|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 47899999995 567999999999999999999999999999999999997 7999999997
Q ss_pred ------CEeCC-------CCCH---HHHhcceEEEeCC-CCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCC
Q 022337 125 ------GRDIT-------DLDV---LSLRRKVGMLFQI-PALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLD 184 (298)
Q Consensus 125 ------g~~i~-------~~~~---~~~~~~ig~v~Q~-~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~ 184 (298)
|.++. ..+. ..+++.++|+||+ +.+++ .|++||+.++....+.. ..++++.++++.+|++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 33221 1111 2346679999998 56776 59999999864332322 1235688899999996
Q ss_pred chhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 185 ~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
++.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+++.|++++++.|+|||+||||++.+..+||+
T Consensus 160 -~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 160 -HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred -hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 5788999999999999999999999999999999999999999999999999999765689999999999999999999
Q ss_pred EEEEeCCEEEEeeChhhhh
Q 022337 265 VCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 265 v~vl~~G~i~~~g~~~~~~ 283 (298)
+++|++|+++..|+++++.
T Consensus 239 i~~l~~G~i~~~g~~~~~~ 257 (520)
T TIGR03269 239 AIWLENGEIKEEGTPDEVV 257 (520)
T ss_pred EEEEeCCEEeeecCHHHHH
Confidence 9999999999988887653
No 266
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.7e-49 Score=395.83 Aligned_cols=206 Identities=30% Similarity=0.407 Sum_probs=182.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++|+|+++.++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+...+|++++
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 36999999999975557999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcC-----CCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK-----TGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|++|++.+|+.|+++| + ...+++++.++++.+++.. ..+. .+.+||||||||++||||++++|++|
T Consensus 401 ~v~q~~~lf~~ti~~n---~-----~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~il 471 (547)
T PRK10522 401 AVFTDFHLFDQLLGPE---G-----KPANPALVEKWLERLKMAH-KLELEDGRISNLKLSKGQKKRLALLLALAEERDIL 471 (547)
T ss_pred EEecChhHHHHhhccc---c-----CchHHHHHHHHHHHcCCch-hhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999988 2 1234567888999998863 2221 14689999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
|||||||+||+.+++.+.+.+.+..++.++|+|+|||+++.+. .||+|++|++|++++..
T Consensus 472 ilDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 472 LLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELT 531 (547)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEec
Confidence 9999999999999999999998765434899999999998764 69999999999999764
No 267
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-50 Score=345.51 Aligned_cols=212 Identities=34% Similarity=0.565 Sum_probs=191.4
Q ss_pred CeEEEEeEEEEeCCCCc--ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDGAP--ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~--vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+++.+++++..|. +++ +|+|+|++|.+||+++++|||||||||||++++|+.+|+.|+|.+||+.|..-. ..
T Consensus 2 ~~l~~~~~sl~y~-g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----ae 75 (259)
T COG4525 2 CMLNVSHLSLSYE-GKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AE 75 (259)
T ss_pred ceeehhheEEecC-CcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----cc
Confidence 4688899999995 455 999999999999999999999999999999999999999999999999987533 23
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
-|.|||++.++|. ++.||++|++...+... ..+.+.+.+..+|+. +..++++-+|||||||||.|||||+.+|++|
T Consensus 76 rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~L 154 (259)
T COG4525 76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLL 154 (259)
T ss_pred ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc-cccccceEeecchHHHHHHHHHHhhcCcceE
Confidence 4999999999985 99999999998877643 345678899999997 5779999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPD 280 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~ 280 (298)
+||||+++||.-+++++.++|.++.++.|+.+++||||++++.-+|+|++||+. |+|++.-+++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 999999999999999999999999888899999999999999999999999984 7998765543
No 268
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-50 Score=343.93 Aligned_cols=172 Identities=40% Similarity=0.696 Sum_probs=159.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ +.++|+++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEE
Confidence 46899999995 457999999999999999999999999999999999999999999999999986554 4567789999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
||++.+++. |+.||+. |||||+||++|||||+.+|+++||||||
T Consensus 79 ~q~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~illlDEPt 123 (173)
T cd03230 79 PEEPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILDEPT 123 (173)
T ss_pred ecCCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 999988875 9999974 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
++||+.+++.+.+.|+++.++ |.|+|++|||++.+..+||++++|++|++
T Consensus 124 ~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 124 SGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred cCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999765 89999999999999999999999999974
No 269
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-50 Score=345.52 Aligned_cols=175 Identities=48% Similarity=0.802 Sum_probs=161.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC--HHHHhcceE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD--VLSLRRKVG 141 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~--~~~~~~~ig 141 (298)
++++|++++|+ ++++++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ...+++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 47899999995 567999999999999999999999999999999999999999999999999987654 445678899
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
|++|++.+++ .|++||+.+. ||||||||++|||||+.+|+++||||
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~llilDE 126 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLLDE 126 (178)
T ss_pred EEecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 9999998886 4999998653 99999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
||+|||+.++..+.+.|++++++.|.|+|++|||++.+..+||++++|++|+
T Consensus 127 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 127 PTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999976547999999999999998999999999984
No 270
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.5e-50 Score=372.23 Aligned_cols=236 Identities=33% Similarity=0.474 Sum_probs=211.3
Q ss_pred CCCeEEEEeEEEEeCCC----------CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 60 QKPKFRVRELRKESDDG----------APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~----------~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
..+.++.+++...|+-+ ..+++++||++++||.+||||+||||||||-..|.+|++++ |+|.++|+++.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 45679999999888421 24899999999999999999999999999999999999876 99999999998
Q ss_pred CCCHH---HHhcceEEEeCCCC--CCc-ccHHHHhHhCccccCCC----ccHHHHHHHHHHcCCCchhhcCCCCCCChhH
Q 022337 130 DLDVL---SLRRKVGMLFQIPA--LFE-GTVVDNIRYGPQLRGKK----LTENEVYKLLSLADLDSSFLNKTGGEISVGQ 199 (298)
Q Consensus 130 ~~~~~---~~~~~ig~v~Q~~~--l~~-~tv~eni~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 199 (298)
.++.+ .+|+++-.|||||+ |-| +||.+-|.-|+..+... +.++++.++|+.+|++..-+++||+++||||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 87755 45789999999996 556 59999999998766532 2346789999999999888999999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
|||+|||||++.+|++++||||||+||..-+.++.++|+++.+++|.+-+|||||+..+..+||+|+||++|+|+|.|+.
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~ 511 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc-cCChHHHHHhhh
Q 022337 280 DLLSE-AKHPMALRFLQL 296 (298)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~ 296 (298)
+++.+ +.++|.+.+..+
T Consensus 512 ~~if~~P~~~YT~~L~~a 529 (534)
T COG4172 512 EAVFANPQHEYTRALLAA 529 (534)
T ss_pred HHHhcCCCcHHHHHHHHh
Confidence 98764 577888887654
No 271
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-50 Score=398.03 Aligned_cols=215 Identities=23% Similarity=0.420 Sum_probs=186.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~ 139 (298)
.++++++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...+++
T Consensus 263 ~~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 263 ETVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred CcEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 45899999998762 38999999999999999999999999999999999999999999999999865443 345678
Q ss_pred eEEEeCCC---CCCc-ccHHHHhHhCcccc--------CC-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 140 VGMLFQIP---ALFE-GTVVDNIRYGPQLR--------GK-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 140 ig~v~Q~~---~l~~-~tv~eni~~~~~~~--------~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
+||+||++ .+++ .|++||+.++...+ +. . ...+++.++++.+++..+..++++.+|||||||||+
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 419 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVL 419 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHH
Confidence 99999984 5776 49999998763211 10 1 122457789999999524678999999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
|||||+.+|++|||||||+|||+.+++.++++|++++++ |.|||++|||++.+..+|||+++|++|++++.++.
T Consensus 420 lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999999764 89999999999999999999999999999988765
No 272
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=5e-50 Score=351.48 Aligned_cols=197 Identities=29% Similarity=0.438 Sum_probs=176.4
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..++++++|+
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEe
Confidence 47899999995 567999999999999999999999999999999999999999999999999875433 3567789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+|++.+++ .|++||+.+.... ..++++.++++.+++. ++.++++.+||||||||++|||||+.+|+++||||||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHAD----HSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred ccccccCCCcCHHHHHHhhccc----ccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99998876 5999999875321 1356788899999996 5678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
++||+.+++.+.+.|++++++ |.|+|++|||......+|++++++
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence 999999999999999998754 899999999999888999999887
No 273
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.1e-50 Score=345.50 Aligned_cols=177 Identities=33% Similarity=0.563 Sum_probs=161.5
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 4789999999643 3699999999999999999999999999999999999999999999999987544 3456778999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+||++.+++.|++||+ +.+||||||||++||||++.+|++|||||||
T Consensus 80 ~~q~~~~~~~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 80 LNQRPYLFDTTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred EccCCeeecccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 9999988888999987 5689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
++||+.+++.+++.|.++. + +.|+|++||+++.+. .||++++|++|++++.|
T Consensus 127 ~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 127 VGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTGIE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred ccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEEecC
Confidence 9999999999999999984 3 899999999999986 69999999999998653
No 274
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-50 Score=387.27 Aligned_cols=219 Identities=29% Similarity=0.485 Sum_probs=195.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ 139 (298)
.+.++++|++|+|+ +.++|+++||++.+||++||+|+||||||||+|+|+|.++|++|+|+++|+.+...++.+ ....
T Consensus 6 ~~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 45799999999995 679999999999999999999999999999999999999999999999999997666654 4567
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccC---C-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRG---K-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~---~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+.|+|+.+|+|. ||.|||.++..... . + .-.+++.++++.+++..+ .+.++.+||.||||.|+||||+..+
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999999985 99999998865332 1 1 123567889999998533 7889999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC-hhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK-PDLL 282 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~-~~~~ 282 (298)
+++||||||||+|+....+.+++.+++++++ |.+||+|||+++++.++||||.||+||+.+...+ ..++
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence 9999999999999999999999999999764 9999999999999999999999999999998887 3544
No 275
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.4e-51 Score=342.87 Aligned_cols=210 Identities=35% Similarity=0.531 Sum_probs=194.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++++.+.- ++.++|+++||++.+||+++|+||||||||||+|+++-|..|++|.+++.|++++.+.++.+|..|+|+
T Consensus 4 le~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~ 82 (223)
T COG4619 4 LELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYC 82 (223)
T ss_pred hHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHH
Confidence 4556665544 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS 223 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts 223 (298)
.|.|.||+.||+||+.|+...+....+...+.+.++++++++.++++.+.+||||||||++|+|-|..-|+|||||||||
T Consensus 83 ~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts 162 (223)
T COG4619 83 AQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS 162 (223)
T ss_pred HcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence 99999999999999999977666555677888999999999888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 224 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 224 ~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
+||+.+++.+-++|.++.+++..+++.||||.+.+.+.+|+++-+..|++-
T Consensus 163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred hcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 999999999999999998777999999999999988999999999999763
No 276
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=9.7e-50 Score=344.52 Aligned_cols=176 Identities=31% Similarity=0.505 Sum_probs=160.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~ 139 (298)
+++++++|++++| +|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...+++
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 3579999999988 8999999999999999999999999999999999999999999999999876653 345678
Q ss_pred eEEEeCCC---CCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIP---ALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~---~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|+||++ .+++ .|++||+.++.. ||||||||++|||||+.+|++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~p~l 125 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARDPRV 125 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccCCCE
Confidence 99999995 3565 599999976421 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||||||++||+.+++.+.+.|+++.++ |.|+|++||+++++.++||++++|++|++
T Consensus 126 lllDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 126 LILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred EEECCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999998754 89999999999999999999999999974
No 277
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.8e-50 Score=345.30 Aligned_cols=179 Identities=42% Similarity=0.652 Sum_probs=164.5
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF 144 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~ 144 (298)
+++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.++|+|
T Consensus 1 ~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYG-GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEEC-CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 4789999995 467999999999999999999999999999999999999999999999999997766666677899999
Q ss_pred CCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 145 QIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 145 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
| +++.+++. +..++.+.+||||||||++|||||+.+|+++||||||++
T Consensus 80 q-------------------------------~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 127 (180)
T cd03214 80 Q-------------------------------ALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSH 127 (180)
T ss_pred H-------------------------------HHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 8 67778886 467888999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
||+.+++.+.+.|.+++++.+.|+|++||+++.+.++||++++|++|++++.
T Consensus 128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 128 LDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999998764478999999999999999999999999999764
No 278
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-49 Score=349.18 Aligned_cols=192 Identities=22% Similarity=0.293 Sum_probs=167.3
Q ss_pred eEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHH
Q 022337 63 KFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE---PPSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~---p~~G~I~i~g~~i~~~~~~~~ 136 (298)
.+.++|++|.|+. ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 5789999999963 3579999999999999999999999999999999999999 89999999999987543 345
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++.++|+||++.+++. ||+||+.++.... .++++.+||||||||++|||||+.+|++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~l 139 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASV 139 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 6789999999988874 9999998753210 3457789999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM-VSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~-itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
|||||||++||+.+++.+++.|++++++.+.|+|+ ++|+.+.+.++||++++|++|++++.|
T Consensus 140 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 140 LCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999997654566555 566678888999999999999998653
No 279
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.8e-50 Score=393.57 Aligned_cols=221 Identities=21% Similarity=0.310 Sum_probs=189.5
Q ss_pred CCeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCCCCCH-HHH
Q 022337 61 KPKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDITDLDV-LSL 136 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~~~~~-~~~ 136 (298)
.++++++|++++|++ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...+. ..+
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 458999999998842 35799999999999999999999999999999999999996 89999999999864433 345
Q ss_pred hcceEEEeCCC---CCCc-ccHHHHhHhCcc--cc---CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 137 RRKVGMLFQIP---ALFE-GTVVDNIRYGPQ--LR---GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 137 ~~~ig~v~Q~~---~l~~-~tv~eni~~~~~--~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
++++||+||++ .+++ .|+++|+.++.. .. ... ..++++.++++.+++.....++++.+|||||||||+|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 77899999996 4676 599999987531 11 111 1234578899999995335788999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||||+.+|++|||||||+|||+.+++.++++|.+++++ |.|||++|||++++.++|||+++|++|+++...+.+++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999999999999765 89999999999999999999999999999988765543
No 280
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.1e-49 Score=346.01 Aligned_cols=182 Identities=34% Similarity=0.505 Sum_probs=164.3
Q ss_pred eEEEEeEEEEeCC-----CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHH
Q 022337 63 KFRVRELRKESDD-----GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~-----~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~ 135 (298)
.++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 5899999999964 267999999999999999999999999999999999999 9999999999998864 24
Q ss_pred HhcceEEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 136 LRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+++.++|+||++.+++ .|++||+.++... .+||||||||++|||||+.+|+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~----------------------------~~LS~G~~qrv~laral~~~p~ 131 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAKL----------------------------RGLSGGERKRVSIALELVSNPS 131 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHHh----------------------------ccCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999998887 4999999754210 0899999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEe
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~ 276 (298)
++||||||++||+.+++.+.+.|+++.++ |+|+|++|||++ .+..+||++++|++|++++.
T Consensus 132 illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 132 LLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999998754 899999999996 68889999999999999764
No 281
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.2e-49 Score=424.76 Aligned_cols=208 Identities=28% Similarity=0.532 Sum_probs=182.6
Q ss_pred eEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE-CCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL-DGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i-~g~~i~~~~~~~~~~~ 139 (298)
.|+++||+|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++..++...+|++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 59999999999643 36999999999999999999999999999999999999999999999 5789888888888999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCcccc-C----------------------------------------------------
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLR-G---------------------------------------------------- 166 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~-~---------------------------------------------------- 166 (298)
||||+|++.+|+.|++|||.++.... .
T Consensus 462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 99999999999999999999974210 0
Q ss_pred CCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHH
Q 022337 167 KKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236 (298)
Q Consensus 167 ~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~ 236 (298)
....++++.++++.+++++. ..++.+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~ 621 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 01234678888888888532 12456789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 237 l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
|+++.++.|+|+|+|||+++.+ +.||+|++|++|
T Consensus 622 L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 622 INNLKGNENRITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 9998754589999999999998 579999999986
No 282
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.4e-48 Score=390.03 Aligned_cols=206 Identities=24% Similarity=0.370 Sum_probs=181.1
Q ss_pred CeEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 62 PKFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
..++++||+|+|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..++|
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 359999999999642 2599999999999999999999999999999999999999999999999999998888899
Q ss_pred cceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCC------CCCCChhHHHHHHHHHHHcC
Q 022337 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKT------GGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LSgGqkQRv~iAral~~ 211 (298)
+.++||+|++.+|+.|+++|.. ...+++++.++++.+++++ ..++. ...||||||||++||||+++
T Consensus 416 ~~i~~v~q~~~lf~~ti~~n~~-------~~~~~~~~~~~~~~~~l~~-~~~~lp~g~~t~~~LSgGq~qRlalaRall~ 487 (555)
T TIGR01194 416 DLFSAIFADFHLFDDLIGPDEG-------EHASLDNAQQYLQRLEIAD-KVKIEDGGFSTTTALSTGQQKRLALICAWLE 487 (555)
T ss_pred hhCcEEccChhhhhhhhhcccc-------cchhHHHHHHHHHHcCCch-hhcccccccCCcccCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999941 1234667889999999964 33332 35799999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHH-HHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLV-KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~-~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+|++|||||||++||+.+++.+.+.+. .+.. .|+|+|+|||+++.+ ..||+|++|++|++++.-
T Consensus 488 ~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT 552 (555)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence 999999999999999999999998765 3433 489999999999877 579999999999998753
No 283
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-50 Score=332.01 Aligned_cols=227 Identities=34% Similarity=0.506 Sum_probs=199.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC--CCCC----HHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI--TDLD----VLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i--~~~~----~~~~ 136 (298)
.|+++|+++.| +..++|-||+|+.++||.+.++||||||||||+|.|.-+.-|.+|+..|.|... ...+ ..++
T Consensus 2 sirv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 37899999999 467899999999999999999999999999999999999999999999988643 2222 2367
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCc-cccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGP-QLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~-~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
|+++|+|||..+++|. ||.||+.-.+ +..+.+. ...++.++++++.+. ++.|+.|-.|||||+|||+|||||+.+
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-~~adr~plhlsggqqqrvaiaralmmk 159 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMME 159 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc-cccccCceecccchhhhHHHHHHHhcC
Confidence 8999999999999995 9999998653 3334332 345678899999997 589999999999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHHHH
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMALR 292 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~~~ 292 (298)
|++|++||||++|||+-..++.++++++.. .|.|=++|||..+.+.+.|.||+.|++|+|++.|+.+-+.++.......
T Consensus 160 pqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~p~te~f~~ 238 (242)
T COG4161 160 PQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKN 238 (242)
T ss_pred CcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccCccHHHHHH
Confidence 999999999999999999999999999976 4999999999999999999999999999999999998887665443333
No 284
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.2e-49 Score=346.34 Aligned_cols=196 Identities=24% Similarity=0.401 Sum_probs=171.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEe
Confidence 47899999995 568999999999999999999999999999999999999999999999999986654 3456789999
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+|++.+++ .|+.||+.+.....+ ..++++.++++.+++. +..++++.+||||||||++||||++.+|+++||||||
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 155 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHG--GAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPT 155 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcC--CcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99988887 599999987543222 1234678899999996 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
++||+.+++.+.+.|.+++++ |.|+|++||+...+ .|++++.
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~-~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 156 TALDKAGVALLAGLLRAHLAR-GGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred cCCCHHHHHHHHHHHHHHHhC-CCEEEEEEcccccc--cceEEee
Confidence 999999999999999998654 89999999998655 4787764
No 285
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-49 Score=343.80 Aligned_cols=182 Identities=29% Similarity=0.409 Sum_probs=162.8
Q ss_pred eEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHHh
Q 022337 63 KFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 63 ~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
.++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 5899999999964 257999999999999999999999999999999999986 489999999999874 3456
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++++|++|++.+++. |++||+.++.. ++ +||||||||++|||||+.+|++|
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~--------------~~--------------~LSgGe~qrv~la~al~~~p~vl 130 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL--------------LR--------------GLSVEQRKRLTIGVELAAKPSIL 130 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH--------------Hh--------------cCCHHHhHHHHHHHHHhcCCcEE
Confidence 789999999988875 99999986421 00 89999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeC-CEEEEee
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN-GEIVEVL 277 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~-G~i~~~g 277 (298)
||||||++||+.+++.+++.|++++++ |+|+|++||+++ .+..+||++++|++ |++++.|
T Consensus 131 llDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 131 FLDEPTSGLDSQAAYNIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999998754 899999999998 47789999999999 9998754
No 286
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-49 Score=347.17 Aligned_cols=198 Identities=28% Similarity=0.384 Sum_probs=174.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . ..++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~--~~~~~~~~ 77 (207)
T PRK13539 2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P--DVAEACHY 77 (207)
T ss_pred EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h--hhHhhcEE
Confidence 689999999995 4679999999999999999999999999999999999999999999999998642 1 26778999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+++ .|+.||+.+.....+ ...+++.++++.+|+. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 154 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLG--GEELDIAAALEAVGLA-PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEP 154 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcC--CcHHHHHHHHHHcCCH-HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999888765 599999987543322 2245688999999996 467889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
|+|||+.+++.+++.|++++++ |.|||++||+++++.. |+++.++.
T Consensus 155 t~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 155 TAALDAAAVALFAELIRAHLAQ-GGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred cccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999999999999998664 8999999999999875 99887744
No 287
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.7e-50 Score=377.92 Aligned_cols=218 Identities=34% Similarity=0.572 Sum_probs=197.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
...++++||+|.|..++++|+||||++.+|+.+||+||||+||||++|+|.++++.++|.|.|||+||+......+|+.|
T Consensus 535 ~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred CCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 44699999999999999999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|.||||..+|+.|+..||.|+.. ....+++.++.+..++++ ....+++-.|||||||||||||+++
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKP----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred CcccCcceeecceeeeheeecCC----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 99999999999999999998742 345567777776666642 2344567789999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|.+++|||.||+||..+++.+...|.++++ +.|.|+|.|+++.+-. ||.|+++++|+|+|.|.++++...
T Consensus 691 K~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 691 KAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred cCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEeCCeEeecCcHHHHHhc
Confidence 99999999999999999999999999999986 7899999999999965 999999999999999999998653
No 288
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.9e-49 Score=343.78 Aligned_cols=185 Identities=31% Similarity=0.526 Sum_probs=164.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHH-hcce
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSL-RRKV 140 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-~~~i 140 (298)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 47899999995 56799999999999999999999999999999999999 58999999999999977654433 4569
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|+||++.+++. ++.+++ +..+.+|||||+||++|||||+.+|+++|||
T Consensus 80 ~~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~illlD 129 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILD 129 (200)
T ss_pred EEeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999988875 666665 1123589999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh-hcCEEEEEeCCEEEEeeChh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR-IADVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~-~~d~v~vl~~G~i~~~g~~~ 280 (298)
|||++||+.++..+.+.|++++++ ++|+|++||+++.+.. +||++++|++|++++.|+.+
T Consensus 130 EPt~~LD~~~~~~l~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 130 EPDSGLDIDALRLVAEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 999999999999999999998754 8999999999999987 79999999999999998543
No 289
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-49 Score=345.30 Aligned_cols=196 Identities=25% Similarity=0.416 Sum_probs=172.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.. ....+++.++|
T Consensus 1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 589999999995 5679999999999999999999999999999999999999999999999998864 33456788999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+++ .|++||+.++.... ....++.++++.+++. +..++++.+||||||||++||||++.+|++||||||
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP 154 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFS---PGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP 154 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcC---cchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999998876 59999999864221 1235688899999996 467888999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
|++||+.+++.+.+.|++++++ |.|+|++||+.+.+.. ||.-.
T Consensus 155 ~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~-~d~~~ 197 (200)
T PRK13540 155 LVALDELSLLTIITKIQEHRAK-GGAVLLTSHQDLPLNK-ADYEE 197 (200)
T ss_pred CcccCHHHHHHHHHHHHHHHHc-CCEEEEEeCCchhccc-cchhh
Confidence 9999999999999999998654 8999999999998855 88754
No 290
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-49 Score=336.90 Aligned_cols=170 Identities=43% Similarity=0.713 Sum_probs=157.4
Q ss_pred EEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++|++++|+++ ..+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999643 279999999999999999999999999999999999999999999999999876666667788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+||++.+|+.|+.||+ ||||||||++|||||+.+|++|||||||
T Consensus 81 ~~~~~~~~~~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~ 124 (171)
T cd03228 81 VPQDPFLFSGTIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDEAT 124 (171)
T ss_pred EcCCchhccchHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9999988888999887 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
++||+.+++.+.+.|.++.+ ++|+|++|||++.+.. ||++++|++|+
T Consensus 125 ~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 125 SALDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred cCCCHHHHHHHHHHHHHhcC--CCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999853 6999999999999987 99999999985
No 291
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.2e-49 Score=347.11 Aligned_cols=201 Identities=27% Similarity=0.405 Sum_probs=168.9
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHHhcce
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSLRRKV 140 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~~~~i 140 (298)
.+.|+++.|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...++.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 578999999756689999999999999999999999999999999999999999999999998754331 2345679
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|++|++.+|+.|++||+.++... ..++..++++.+++.+. ..++++.+||||||||++|||||+
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPF-----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcC-----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 999999998878999999876321 12334455666665321 134578899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHH--HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIED--VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~--~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
.+|++|||||||++||+.+++.+++ +++.+.+ .|.|+|++||+++.+. .||++++|++|.
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 9999999999999999999999998 5666544 4899999999999985 699999999884
No 292
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=7e-49 Score=387.72 Aligned_cols=216 Identities=25% Similarity=0.432 Sum_probs=187.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ 139 (298)
.++++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .++++
T Consensus 255 ~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 255 EVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred CcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 45799999984 379999999999999999999999999999999999999999999999998765442 35678
Q ss_pred eEEEeCCC---CCCc-ccHHHHhHhCcc--cc---C-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 140 VGMLFQIP---ALFE-GTVVDNIRYGPQ--LR---G-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 140 ig~v~Q~~---~l~~-~tv~eni~~~~~--~~---~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
+||+||++ .+++ .|+.||+.++.. .. + .. ..++++.++++.+++.....++++.+|||||||||+|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~ 408 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIAR 408 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHH
Confidence 99999997 4565 599999987531 10 1 11 123457889999999424678999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++.+..+||++++|++|+++..++++++.
T Consensus 409 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 409 GLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred HHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 999999999999999999999999999999999765 999999999999999999999999999999999887653
No 293
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.8e-49 Score=343.41 Aligned_cols=181 Identities=36% Similarity=0.640 Sum_probs=156.7
Q ss_pred CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhcceEEEeCCC--CCC
Q 022337 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIP--ALF 150 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~--~~~~~~~~~ig~v~Q~~--~l~ 150 (298)
+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++.++|+||++ .++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 45679999999999999999999999999999999999999999999999999842 12234567899999998 356
Q ss_pred cccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH
Q 022337 151 EGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228 (298)
Q Consensus 151 ~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~ 228 (298)
+.|++||+.++....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||+|||+.
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 161 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA 161 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 6799999988643222221 234678899999996 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEccCHHH
Q 022337 229 STQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 229 ~~~~~~~~l~~l~~~~g~tii~itHd~~~ 257 (298)
+++.+.+.|++++++ |+|||++|||+++
T Consensus 162 ~~~~~~~~l~~~~~~-~~tili~sH~~~~ 189 (190)
T TIGR01166 162 GREQMLAILRRLRAE-GMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHc-CCEEEEEeecccc
Confidence 999999999999764 8999999999875
No 294
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=9.9e-49 Score=343.57 Aligned_cols=189 Identities=33% Similarity=0.536 Sum_probs=161.6
Q ss_pred EEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 64 FRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 64 l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 4789999999643 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++|+||++.+++.|++||+.++... ..++..++++.+++.+ ...++.+.+||+|||||++|||||
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral 142 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPF-----DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAV 142 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCc-----CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999988999999986432 1223334444444321 234566789999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~-l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+.+|+++||||||++||+.+++.+.+. ++++.++ |.|||++||+++.+.. ||++++|++|+
T Consensus 143 ~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 143 YSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999999999999999984 5666554 8999999999999987 99999999985
No 295
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.3e-49 Score=350.25 Aligned_cols=199 Identities=31% Similarity=0.413 Sum_probs=171.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
+.++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... .
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~------ 90 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----G------ 90 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----c------
Confidence 78889999995 57899999999999999999999999999999999999999999999999875311 1
Q ss_pred eCCCCCCc-ccHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 144 FQIPALFE-GTVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 144 ~Q~~~l~~-~tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
+...+++ .|+.||+.++...++.. ...+++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||
T Consensus 91 -~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 91 -LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred -ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1122333 59999998764332221 1234577889999996 57889999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||+|||+.+++.+.+.|++++++ |+|||++||+++++..+||++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999998765 899999999999999999999999999998654
No 296
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-49 Score=387.88 Aligned_cols=217 Identities=22% Similarity=0.391 Sum_probs=186.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~ 139 (298)
.+.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...+++
T Consensus 255 ~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 255 EVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred CcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 346899999832 48999999999999999999999999999999999999999999999998864433 334678
Q ss_pred eEEEeCCCC---CCc-ccHHHHhHhCcccc----C---CC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 140 VGMLFQIPA---LFE-GTVVDNIRYGPQLR----G---KK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 140 ig~v~Q~~~---l~~-~tv~eni~~~~~~~----~---~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++|+||++. +|+ .|+.||+.++.... + .. ..++++.++++.+++..+..++++.+|||||||||+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~ 409 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGR 409 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHH
Confidence 999999973 666 59999998754211 1 01 123457889999999434678999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||+.+|++|||||||+|||+.+++.++++|.+++++ |.|||++|||++++..+||++++|++|++++.|+++++.
T Consensus 410 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 410 WLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999999765 899999999999999999999999999999999887653
No 297
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.7e-48 Score=425.45 Aligned_cols=221 Identities=22% Similarity=0.370 Sum_probs=197.9
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+.+++++||+|+|+++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. +..+.+++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 4579999999999642 579999999999999999999999999999999999999999999999999864 34456778
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
|||+||++.+++ .|++||+.+....++... .++.+.++++.+++. +..++++++||||||||++||+||+.+|+||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999887 499999998655444322 234577889999996 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+||||.+++.+++.|++++++ |+|||++||++++++.+|||+++|++|+++..|+++++..
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999998765 8999999999999999999999999999999999988743
No 298
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.3e-48 Score=371.91 Aligned_cols=214 Identities=30% Similarity=0.511 Sum_probs=193.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~i 140 (298)
+.+++++++|+|+ +..+++||||+|++||+.||+|+||||||||+|+|.|+|+|++|+|+++|+++.-.++. ..+..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5699999999996 77899999999999999999999999999999999999999999999999998765554 567789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCcccc-C----CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLR-G----KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~-~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
|+|+|++.|++. ||.|||.++.... + .....+++.++.+.+|++- -.++++.+||-||||||.|.+||+++|+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVEIlKaLyr~a~ 160 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVEILKALYRGAR 160 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHHHHHHHhcCCC
Confidence 999999999985 9999999986421 1 1223567889999999974 4688999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
+||||||||-|-|...+++++.+++++++ |+|||+|||.++++.++|||+-||++|+++...+
T Consensus 161 iLILDEPTaVLTP~E~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 161 LLILDEPTAVLTPQEADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999875 9999999999999999999999999999876655
No 299
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-49 Score=353.20 Aligned_cols=201 Identities=33% Similarity=0.534 Sum_probs=183.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHHHHhcceEEEeCCCCCCcc-
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL----DVLSLRRKVGMLFQIPALFEG- 152 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~----~~~~~~~~ig~v~Q~~~l~~~- 152 (298)
.+| ++||+.+.-.++||.|+||||||||+|+|+|+.+|++|.|.+||+-+.+. .....+|+|||||||..|||.
T Consensus 13 ~~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 13 FAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred eEE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 344 79999988679999999999999999999999999999999999877442 223457899999999999995
Q ss_pred cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHH
Q 022337 153 TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232 (298)
Q Consensus 153 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~ 232 (298)
||+.|+.|+.+.. .....+++.+.+|+. ++++++|.+|||||||||+|+|||+.+|++||||||.|+||...+++
T Consensus 92 tVrgNL~YG~~~~----~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~E 166 (352)
T COG4148 92 TVRGNLRYGMWKS----MRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166 (352)
T ss_pred EEecchhhhhccc----chHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhH
Confidence 9999999997532 456788999999996 79999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 233 IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++-+|.++.++.+.-|++|||.++++.++||+|++|++|++.+.|..+++..
T Consensus 167 ilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999989999999999999999999999999999999999888754
No 300
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=3.9e-48 Score=422.69 Aligned_cols=220 Identities=30% Similarity=0.502 Sum_probs=197.9
Q ss_pred CCeEEEEeEEEEeC-CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESD-DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~-~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.+.++++||+|.|+ +++.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.|+.
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 34799999999995 34679999999999999999999999999999999999999999999999999864 34556788
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+++. ||+||+.++.+.++.. ..++++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkVL 1083 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999998874 9999999876544432 2245688999999997 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.+++.++++|++++ + |+|||++||+++++..+||||++|++|+++..|++..+..
T Consensus 1084 LLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1084 VLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999984 3 8999999999999999999999999999999999887753
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.6e-48 Score=327.43 Aligned_cols=161 Identities=34% Similarity=0.669 Sum_probs=150.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ig~ 142 (298)
++++|+++.|+ ++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..++.++|
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 47899999995 56799999999999999999999999999999999999999999999999998766543 35678999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
+|| ||||||||++|||||+.+|++|||||||
T Consensus 80 ~~q-------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 80 VYQ-------------------------------------------------LSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred EEe-------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
++||+.+++.+.+.|++++++ |.|+|++|||++.+..+||++++|++|++++
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999754 8999999999999999999999999999874
No 302
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.5e-47 Score=350.05 Aligned_cols=226 Identities=25% Similarity=0.402 Sum_probs=179.4
Q ss_pred hhHHHHHHhhhccCCCCCccccccCCCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 34 SLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
..|.+.+.+.+.+..+ .......+...+.|+++|+++. ++++|+++||+|++||+++|+||||||||||+++|+|+
T Consensus 11 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 11 AFWDEGFGELLEKAKQ-ENNDRKHSSDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHHHHHhcccc-cccccccCCCCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4455555554444322 1112222345567999999985 35699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch-------
Q 022337 114 WEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS------- 186 (298)
Q Consensus 114 ~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~------- 186 (298)
++|++|+|.++| .++|++|++.+++.|++||+.++... ...++.+.++.+++.+.
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~-----~~~~~~~~l~~~~l~~~l~~~~~~ 148 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY-----DEYRYKSVVKACQLEEDITKFPEK 148 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc-----CHHHHHHHHHHhCCHHHHHhcccc
Confidence 999999999987 38999999998888999999876421 11223344444454211
Q ss_pred ---hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 187 ---FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 187 ---~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l-~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
..++.+.+||||||||++|||||+.+|++|||||||++||+.++..+++.+ .++. + +.|||++||+++.+. .|
T Consensus 149 ~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-~~ 225 (282)
T cd03291 149 DNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KA 225 (282)
T ss_pred ccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-hC
Confidence 123446799999999999999999999999999999999999999999865 5554 3 789999999999984 79
Q ss_pred CEEEEEeCCEEEEeeChhhhhc
Q 022337 263 DVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 263 d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|++++|++|++++.|+++++..
T Consensus 226 d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 226 DKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999888754
No 303
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.5e-47 Score=413.87 Aligned_cols=214 Identities=26% Similarity=0.428 Sum_probs=192.6
Q ss_pred CeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..|+++||+++|+++ +++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.|+..++...+|+++
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~i 1294 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAF 1294 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhce
Confidence 369999999999743 579999999999999999999999999999999999997 899999999999999999999999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||||+|.+|++|+++||.... ..+++++.++++.+++.+. .....+..||||||||++|||||+
T Consensus 1295 s~IpQdp~LF~GTIR~NLdp~~-----~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALL 1369 (1490)
T TIGR01271 1295 GVIPQKVFIFSGTFRKNLDPYE-----QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSIL 1369 (1490)
T ss_pred EEEeCCCccCccCHHHHhCccc-----CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999996431 2357789999999888532 122234579999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|+|||||||||+||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|+|++.|+|.++..
T Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1370 SKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS--NCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999998754 7999999999999975 99999999999999999999875
No 304
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4e-48 Score=383.14 Aligned_cols=217 Identities=22% Similarity=0.394 Sum_probs=186.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRR 138 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~ 138 (298)
..++++++|+++ .+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+... .++
T Consensus 265 ~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 265 GAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred CCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 345899999983 2699999999999999999999999999999999999999999999999987655443 356
Q ss_pred ceEEEeCCC---CCCc-ccHHHHhHhCcc----ccCCC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 139 KVGMLFQIP---ALFE-GTVVDNIRYGPQ----LRGKK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 139 ~ig~v~Q~~---~l~~-~tv~eni~~~~~----~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+++|+||++ .+|+ .|+.+|+..... ..... ..++++.++++.+++.....++++.+|||||||||+|||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 799999985 4676 499999864211 11111 12345788999999952357899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||+|||+.+++.+.+.|++++++ |.|||++|||++++.++|||+++|++|+++..++++++.
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999764 899999999999999999999999999999999887654
No 305
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=6.9e-48 Score=343.20 Aligned_cols=192 Identities=33% Similarity=0.495 Sum_probs=168.3
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCC---cccHHHHhHhC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF---EGTVVDNIRYG 161 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~---~~tv~eni~~~ 161 (298)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||++.++ +.|+.+|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 2457899999998763 35999999876
Q ss_pred cccc----CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 162 PQLR----GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 162 ~~~~----~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
.... ... ..++++.++++.+++. +..++++.+||||||||++|||||+.+|+++||||||++||+.+++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 3211 111 1234678899999997 57888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 236 ~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.|++++++ |+|+|++|||++.+.++||+++++ +|+++..|+++++.+
T Consensus 155 ~l~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 155 LFIELAGA-GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 99998754 899999999999999999999999 899999999888754
No 306
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-47 Score=347.76 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=177.4
Q ss_pred eEEEEeEEEEeCC-------------------CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 63 KFRVRELRKESDD-------------------GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 63 ~l~~~~l~~~y~~-------------------~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
.++++||++.|.. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3677777776632 224899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHH
Q 022337 124 DGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQA 200 (298)
Q Consensus 124 ~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 200 (298)
+|. +++++|++.+++ .|+.+|+.++....+... ..+.+.++++.+++. +..++++.+|||||+
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~ 149 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-EFIYQPVKKYSSGMR 149 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHH
Confidence 984 356777776665 499999987533222221 123456778888996 578899999999999
Q ss_pred HHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChh
Q 022337 201 QRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 201 QRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~ 280 (298)
||++|||||+.+|++|||||||+|||+.+++.+++.|.++.+ .|.|||++||+++.+..+||++++|++|++++.|+++
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~ 228 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELD 228 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999865 4899999999999999999999999999999999988
Q ss_pred hhhcc
Q 022337 281 LLSEA 285 (298)
Q Consensus 281 ~~~~~ 285 (298)
++.+.
T Consensus 229 ~~~~~ 233 (264)
T PRK13546 229 DVLPK 233 (264)
T ss_pred HHHHH
Confidence 77553
No 307
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-48 Score=379.03 Aligned_cols=218 Identities=22% Similarity=0.375 Sum_probs=184.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ 139 (298)
+++|+++|+++.| +.+|+++||+|++||++||+||||||||||+|+|+|+.+|++|+|+++|+++...+.. ..++.
T Consensus 248 ~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 248 EVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred CcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 4589999999874 3599999999999999999999999999999999999999999999999998765543 34677
Q ss_pred eEEEeCCCC---CCc-ccHHHHh-----HhCccccCC-C--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 140 VGMLFQIPA---LFE-GTVVDNI-----RYGPQLRGK-K--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 140 ig~v~Q~~~---l~~-~tv~eni-----~~~~~~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++|+||++. +|+ .|+.+|+ .+.....+. . ..++++.++++.+++.....++++.+|||||||||+|||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 404 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGR 404 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHH
Confidence 999999853 565 4777663 322111111 1 123457788999999533578999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
|++.+|+||||||||+|||+.+++.+++.|.++.++ |.|||++|||++++..+|||+++|++|+++..++.+++
T Consensus 405 al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 405 WLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred HHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999998764 89999999999999999999999999999988876543
No 308
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-47 Score=371.87 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=180.2
Q ss_pred CCCeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 60 QKPKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
..++++++|++++|+++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--------- 88 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--------- 88 (549)
T ss_pred ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---------
Confidence 45689999999999654 3699999999999999999999999999999999999999999999999751
Q ss_pred cceEEEeCCCCCCc-ccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
++.+.+.+++ .|++||+.+.....+... ..+++.++++.+++. +..++++.+||||||||++|||||+.+|+
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~-~~ld~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 1222334444 499999987543222221 124467789999996 57889999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+++.|.++++ .|.|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999865 48999999999999999999999999999999999887654
No 309
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=7.9e-48 Score=358.30 Aligned_cols=236 Identities=33% Similarity=0.524 Sum_probs=204.5
Q ss_pred CCCeEEEEeEEEEeCC---CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-----CccEEEECCEeCCCC
Q 022337 60 QKPKFRVRELRKESDD---GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITDL 131 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~---~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-----~~G~I~i~g~~i~~~ 131 (298)
.++.++++|++..|.. ...++++|||+|++||.+||||+||||||-..+.++||++- -+|+|.++|+++-..
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3568999999999852 24799999999999999999999999999999999999964 379999999999887
Q ss_pred CHHHHh----cceEEEeCCCC--CCcc-cHHHHhHhCcccc-CC--CccHHHHHHHHHHcCCCc--hhhcCCCCCCChhH
Q 022337 132 DVLSLR----RKVGMLFQIPA--LFEG-TVVDNIRYGPQLR-GK--KLTENEVYKLLSLADLDS--SFLNKTGGEISVGQ 199 (298)
Q Consensus 132 ~~~~~~----~~ig~v~Q~~~--l~~~-tv~eni~~~~~~~-~~--~~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGq 199 (298)
+..++| .+|+++||+|. |-|. |+...+.-..+.+ +. ...++++.++|+.+|+.+ ...+.||++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 766554 37999999995 4454 7766666544332 22 234678899999999963 35688999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
||||.||+||+++|++||.||||++||...+.+++++|+++.++.|.++++||||+..+.++||||+||.+|++++.|+.
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t 242 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTT 242 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhh-ccCChHHHHHhh
Q 022337 280 DLLS-EAKHPMALRFLQ 295 (298)
Q Consensus 280 ~~~~-~~~~~~~~~~~~ 295 (298)
+.+. .+.|+|++.++.
T Consensus 243 ~~lF~~PqHpYTr~Ll~ 259 (534)
T COG4172 243 ETLFAAPQHPYTRKLLA 259 (534)
T ss_pred HHHhhCCCChHHHHHHh
Confidence 8875 567889887765
No 310
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.2e-47 Score=365.46 Aligned_cols=220 Identities=35% Similarity=0.551 Sum_probs=194.2
Q ss_pred CCCCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 59 IQKPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
..+..+.++++++..++. +++++++||++.+||.+|||||||||||||.|+|.|.++|.+|.|++||-++..|+.+.+-
T Consensus 330 ~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 330 APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 345579999999977654 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHH
Q 022337 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++|||+||+-.||++||.|||.-. ..+.+.+++.++.+..|.++ ......+..||||||||+++||
T Consensus 410 ~hiGYLPQdVeLF~GTIaeNIaRf----~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLAR 485 (580)
T COG4618 410 RHIGYLPQDVELFDGTIAENIARF----GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALAR 485 (580)
T ss_pred cccCcCcccceecCCcHHHHHHhc----cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHH
Confidence 999999999999999999999722 11345566777777777642 1233346799999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+.+|.+++||||-|+||...+..+.+.|.+.+++ |.|+|+|||+++.+. .+|+|++|++|++...|+.+++..
T Consensus 486 AlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~r-G~~vvviaHRPs~L~-~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 486 ALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR-GGTVVVIAHRPSALA-SVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred HHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHc-CCEEEEEecCHHHHh-hcceeeeecCChHHhcCCHHHHHH
Confidence 999999999999999999999999999999998765 999999999999774 699999999999999999888754
No 311
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.5e-47 Score=359.34 Aligned_cols=196 Identities=36% Similarity=0.607 Sum_probs=171.1
Q ss_pred EEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cH
Q 022337 95 IIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TE 171 (298)
Q Consensus 95 iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~ 171 (298)
|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++++|+||++.+|+. ||+||+.|+....+... ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876543 36789999999999975 99999998754333221 23
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~i 251 (298)
+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.+.|+++.++.|+|+|+|
T Consensus 79 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv 157 (325)
T TIGR01187 79 PRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV 157 (325)
T ss_pred HHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5678899999996 578999999999999999999999999999999999999999999999999999977668999999
Q ss_pred ccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHH
Q 022337 252 SHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF 293 (298)
Q Consensus 252 tHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~ 293 (298)
|||++++..+|||+++|++|++++.|+++++... .+.....|
T Consensus 158 THd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~ 200 (325)
T TIGR01187 158 THDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARF 200 (325)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHh
Confidence 9999999999999999999999999999887543 23344444
No 312
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=9.6e-48 Score=378.56 Aligned_cols=217 Identities=22% Similarity=0.329 Sum_probs=180.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCCC-CCHHHHh
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDITD-LDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~~-~~~~~~~ 137 (298)
..++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++.. .+....+
T Consensus 257 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 257 NEPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred CCceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 356899999999995 45799999999999999999999999999999999998876 79999999987632 2223456
Q ss_pred cceEEEeCCCCCC-c--ccHHHHhHhCcc----ccC-CC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 138 RKVGMLFQIPALF-E--GTVVDNIRYGPQ----LRG-KK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 138 ~~ig~v~Q~~~l~-~--~tv~eni~~~~~----~~~-~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++||++|++.++ . .++.+++.++.. .+. .. ..++++.++++.+++.....++++.+|||||||||+||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a 415 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence 7899999998653 2 367777654321 111 11 1234678899999996326789999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh-hcCEEEEEeCCEEEEee
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR-IADVVCLLVNGEIVEVL 277 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~-~~d~v~vl~~G~i~~~g 277 (298)
|+.+|++|||||||+|||+.+++.+++.|++++++.+.|||++|||++++.. +||++++|++|++++..
T Consensus 416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999999999976534579999999999987 59999999999998754
No 313
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-47 Score=379.58 Aligned_cols=205 Identities=28% Similarity=0.384 Sum_probs=177.2
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++||
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~ 68 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGK 68 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEE
Confidence 589999999995 568999999999999999999999999999999999999999999999872 35999
Q ss_pred EeCCCCCCcc-cHHHHhHhCcc-c----------cCC-----------------------CccHHHHHHHHHHcCCCchh
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQ-L----------RGK-----------------------KLTENEVYKLLSLADLDSSF 187 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~-~----------~~~-----------------------~~~~~~~~~~l~~~~l~~~~ 187 (298)
++|++.+++. |++||+.++.. . ... ...++++.++++.+|+.+..
T Consensus 69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 148 (530)
T PRK15064 69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ 148 (530)
T ss_pred EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence 9999988764 99999987531 0 000 01134577899999996433
Q ss_pred hcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .|.|||+||||++.+..+||++++
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d~i~~ 224 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDRHFLNSVCTHMAD 224 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCHHHHHhhcceEEE
Confidence 4578899999999999999999999999999999999999999999999864 378999999999999999999999
Q ss_pred EeCCEEE-EeeChhhhh
Q 022337 268 LVNGEIV-EVLKPDLLS 283 (298)
Q Consensus 268 l~~G~i~-~~g~~~~~~ 283 (298)
|++|+++ ..|+++++.
T Consensus 225 l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 225 LDYGELRVYPGNYDEYM 241 (530)
T ss_pred EeCCEEEEecCCHHHHH
Confidence 9999994 788887664
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.1e-47 Score=325.60 Aligned_cols=163 Identities=36% Similarity=0.489 Sum_probs=149.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|++++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++++|+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEE
Confidence 468999999964467999999999999999999999999999999999999999999999873 579999
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS 223 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts 223 (298)
+|++.+++.|++||+.++ .+.+||||||||++|||||+.+|+++||||||+
T Consensus 70 ~q~~~~~~~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~ 120 (166)
T cd03223 70 PQRPYLPLGTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATS 120 (166)
T ss_pred CCCCccccccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 999988777999999753 356899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 224 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 224 ~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
+||+.+++.+.+.|+++ +.|+|++|||++.+ .+||++++|++|
T Consensus 121 ~LD~~~~~~l~~~l~~~----~~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 121 ALDEESEDRLYQLLKEL----GITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred ccCHHHHHHHHHHHHHh----CCEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 99999999999999876 57999999999876 689999999876
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-47 Score=376.12 Aligned_cols=205 Identities=27% Similarity=0.331 Sum_probs=180.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ +++
T Consensus 317 ~~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 317 RNALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred CceEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 45899999999995 567999999999999999999999999999999999999999999999873 469
Q ss_pred EEEeCCCC--CCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPA--LFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||++|++. +++ .|+.+|+.+... ....++++.++++.+++..+..++++.+|||||||||+|||||+.+|++||
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll 461 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQ---EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV 461 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhcc---CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999974 444 499999875211 112346688999999995346789999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~~~ 284 (298)
|||||++||+.+++.+.+.|+++ +.|||+||||++++..+|||+++|++|+++ ..|++.++.+
T Consensus 462 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 462 MDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999999999999876 349999999999999999999999999998 7788877654
No 316
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=381.66 Aligned_cols=219 Identities=32% Similarity=0.492 Sum_probs=193.4
Q ss_pred CeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH--
Q 022337 62 PKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-- 136 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-- 136 (298)
++++++|++++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999532 469999999999999999999999999999999999999999999999999987665443
Q ss_pred --hcceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 137 --RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 137 --~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
++.++|+||++.+|+. |+.||+.+.....+.. ..++++.++++.+++. +..++.+.+||+||+||++|||||+.
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 4689999999999875 9999998754322221 2235678899999996 57899999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++|||||||+|||+.+++.+.+.|++++++ |.|+|++||+++.+. .|||+++|++|++++.|++++..
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~-g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRDR-GHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHH-hCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999998754 899999999999885 69999999999999999987653
No 317
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.3e-47 Score=379.31 Aligned_cols=205 Identities=27% Similarity=0.313 Sum_probs=178.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.+||+++||+++|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ ...+
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 46899999999995246899999999999999999999999999999999999999999999874 1469
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccc-c-------------CCC------------------------ccHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQL-R-------------GKK------------------------LTENEVYKLLSLA 181 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~-~-------------~~~------------------------~~~~~~~~~l~~~ 181 (298)
||+||++.+++. |+.||+.++... . ... ...+++.++++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999998875 999999875310 0 000 0124577889999
Q ss_pred CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 182 DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 182 ~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
|++ . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+
T Consensus 153 gl~-~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~~~~ 226 (556)
T PRK11819 153 RCP-P-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFLDNV 226 (556)
T ss_pred CCC-c-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhh
Confidence 995 3 68899999999999999999999999999999999999999999999999986 24999999999999999
Q ss_pred cCEEEEEeCCEEE-EeeChhhh
Q 022337 262 ADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 262 ~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
||+|++|++|+++ ..|+.+++
T Consensus 227 ~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 227 AGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred cCeEEEEeCCEEEEecCCHHHH
Confidence 9999999999986 67877665
No 318
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.1e-47 Score=329.89 Aligned_cols=191 Identities=21% Similarity=0.369 Sum_probs=164.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++.++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ++.++|
T Consensus 1 ~l~~~~l~~~~~-~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 1 MLSLHQLQFNIE-QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred CeEEEEeeEEEC-CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 478999999995 44455 599999999999999999999999999999999999999999999875432 356999
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+++ .|+.||+.+...... ..+++.++++.+++. +..++++.+||||||||++||||++.+|+++|||||
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYN---SAETLYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcc---cHHHHHHHHHHcCCH-hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999986654 699999987543221 345678889999996 567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEE
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v 265 (298)
|++||+.+++.+.+.|++..+ .|.|+|++||+++.+.. ||-+
T Consensus 151 ~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 151 ETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCccccch-hhee
Confidence 999999999999999987654 48999999999998865 7765
No 319
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-46 Score=339.66 Aligned_cols=195 Identities=24% Similarity=0.315 Sum_probs=164.2
Q ss_pred EeCCCCcceeeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCC
Q 022337 72 ESDDGAPILKGVNMEIP-----KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI 146 (298)
Q Consensus 72 ~y~~~~~vL~~isl~i~-----~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~ 146 (298)
+|++..+.+++++|++. +||+++|+||||||||||+|+|+|+++|++|+|.++|. .++|++|+
T Consensus 2 ~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~ 69 (246)
T cd03237 2 TYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQY 69 (246)
T ss_pred CCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEeccc
Confidence 45544557778888876 79999999999999999999999999999999999884 58999999
Q ss_pred CCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 147 PALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 147 ~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
+..+ ..||.||+.+...... .......++++.+++. +..++++.+|||||||||+|||||+.+|+++||||||++|
T Consensus 70 ~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 70 IKADYEGTVRDLLSSITKDFY--THPYFKTEIAKPLQIE-QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred ccCCCCCCHHHHHHHHhhhcc--ccHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 8754 5699999976432111 1223467789999996 5788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE--EeeChhh
Q 022337 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV--EVLKPDL 281 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~--~~g~~~~ 281 (298)
|+.++..+.+.|++++++.|+|||+||||++.+..+||++++|+++..+ ..+++.+
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 9999999999999997666899999999999999999999999765433 3344444
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2e-46 Score=374.29 Aligned_cols=205 Identities=27% Similarity=0.307 Sum_probs=175.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +..||
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~ 71 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVG 71 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEE
Confidence 4899999999995356799999999999999999999999999999999999999999999874 14699
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccc-c-------------CCCcc------------------------HHHHHHHHHHcC
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQL-R-------------GKKLT------------------------ENEVYKLLSLAD 182 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~-~-------------~~~~~------------------------~~~~~~~l~~~~ 182 (298)
|+||++.+++. |+.||+.++... . ..... ..++.++++.++
T Consensus 72 ~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 151 (552)
T TIGR03719 72 YLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR 151 (552)
T ss_pred EEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC
Confidence 99999988874 999999875321 0 00000 123556777788
Q ss_pred CCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 183 LDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 183 l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
++ . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++.+..+|
T Consensus 152 l~-~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 152 CP-P-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred CC-c-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhc
Confidence 84 3 57889999999999999999999999999999999999999999999999876 349999999999999999
Q ss_pred CEEEEEeCCEEE-EeeChhhhh
Q 022337 263 DVVCLLVNGEIV-EVLKPDLLS 283 (298)
Q Consensus 263 d~v~vl~~G~i~-~~g~~~~~~ 283 (298)
|++++|++|+++ ..|+.+++.
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHH
Confidence 999999999976 678877653
No 321
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=7.9e-47 Score=382.98 Aligned_cols=211 Identities=29% Similarity=0.370 Sum_probs=180.8
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC--ccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP--SGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~--~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++|++++|+ ++.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||+++.. ..++++|||
T Consensus 71 ~~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv 145 (659)
T PLN03211 71 ISDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFV 145 (659)
T ss_pred cccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEE
Confidence 445666663 567999999999999999999999999999999999999985 8999999998742 345679999
Q ss_pred eCCCCCCcc-cHHHHhHhCccccC---CCc--cHHHHHHHHHHcCCCchhh-----cCCCCCCChhHHHHHHHHHHHcCC
Q 022337 144 FQIPALFEG-TVVDNIRYGPQLRG---KKL--TENEVYKLLSLADLDSSFL-----NKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 144 ~Q~~~l~~~-tv~eni~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~-----~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+|++.+++. ||+||+.+....+. ... ..++++++++.+|+. +.. ++.+.+||||||||++|||||+.+
T Consensus 146 ~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~ 224 (659)
T PLN03211 146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT-KCENTIIGNSFIRGISGGERKRVSIAHEMLIN 224 (659)
T ss_pred CcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhcCceeCCCCCCCcChhhhhHHHHHHHHHhC
Confidence 999999874 99999998643321 111 124578899999996 343 345778999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+.++||++++|++|++++.|+++++.
T Consensus 225 P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 225 PSLLILDEPTSGLDATAAYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred CCEEEEeCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 9999999999999999999999999999764 999999999998 588899999999999999999988763
No 322
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.3e-46 Score=372.11 Aligned_cols=208 Identities=28% Similarity=0.359 Sum_probs=178.7
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ + .++
T Consensus 322 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 322 DKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred CeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 46899999999995 56799999999999999999999999999999999999999999999853 2 159
Q ss_pred EEEeCCC-CCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 141 GMLFQIP-ALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 141 g~v~Q~~-~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||+||++ .+++ .|+.||+.++....+......+..++++.+++.....++++.+|||||||||+|||||+.+|++|||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999997 5666 4999999986432222222344567899999963356889999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC-CEEE-EeeChhhhhc
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-GEIV-EVLKPDLLSE 284 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~-G~i~-~~g~~~~~~~ 284 (298)
||||+|||+.+++.+.+.|.++. + |||+||||++++..+||++++|++ |++. ..|+.+++.+
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~ 533 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEFP---G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEE 533 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHH
Confidence 99999999999999999999872 4 899999999999999999999996 7876 4677776644
No 323
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.8e-46 Score=371.53 Aligned_cols=208 Identities=28% Similarity=0.361 Sum_probs=177.7
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ + .+
T Consensus 319 ~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~ 386 (552)
T TIGR03719 319 GDKVIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VK 386 (552)
T ss_pred CCeEEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eE
Confidence 356899999999995 56799999999999999999999999999999999999999999999854 2 15
Q ss_pred eEEEeCCCC-CCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 140 VGMLFQIPA-LFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 140 ig~v~Q~~~-l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
|||+||++. +++ .|+.||+.++....+....+.++.++++.+++.....++++.+|||||||||+|||||+.+|++||
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 999999974 665 499999998653222221233466789999996335688999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC-CEEE-EeeChhhhh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN-GEIV-EVLKPDLLS 283 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~-G~i~-~~g~~~~~~ 283 (298)
|||||+|||+.+++.+.+.|.++. + |||+||||++++..+||++++|++ |+++ ..|+.+++.
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 999999999999999999999872 4 899999999999999999999997 5876 456666553
No 324
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2e-46 Score=340.55 Aligned_cols=204 Identities=25% Similarity=0.323 Sum_probs=172.0
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEE-----------ECCEeCCCCCHHH
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-----------LDGRDITDLDVLS 135 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~-----------i~g~~i~~~~~~~ 135 (298)
.|++++|++++.+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|+ ++|+++.......
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 3788999644469999995 999999999999999999999999999999999996 7888875442222
Q ss_pred Hh--cceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 136 LR--RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 136 ~~--~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
.+ ..++|++|++.+++.++.+++.+... ....++.+.++++.+++. +..++.+.+||||||||++|||||+.+|
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLK---KKDERGKLDELVDQLELR-HVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhc---hhHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 22 24799999988777777777776432 112345688999999996 5678999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+++||||||++||+.+++.+.+.|+++.++ ++|||++|||++.+..+||+|++|+ |++.+.|
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999998764 8999999999999999999999994 6666543
No 325
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.9e-45 Score=396.81 Aligned_cols=203 Identities=27% Similarity=0.444 Sum_probs=175.7
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++|++|+|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|.+. .+++.
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCc
Confidence 35999999999964 35799999999999999999999999999999999999999998763 24568
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
|+||+|+|.+|+.|++|||.|+.. .++++..++++.+++.++ .....+..||||||||++||||+
T Consensus 681 Iayv~Q~p~Lf~gTIreNI~fg~~-----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl 755 (1495)
T PLN03232 681 VAYVPQVSWIFNATVRENILFGSD-----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV 755 (1495)
T ss_pred EEEEcCccccccccHHHHhhcCCc-----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence 999999999999999999999842 346677788887777432 23345678999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHH-HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~-l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+++|+|+|||||||+||+.+.+++++. +.... .++|+|+|||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 756 y~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 756 YSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFLP-LMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhHH-hCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999988765 45443 3899999999999875 699999999999999999988754
No 326
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.7e-45 Score=367.70 Aligned_cols=199 Identities=26% Similarity=0.338 Sum_probs=176.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|+++.|+ + ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ .+
T Consensus 337 ~~~~l~~~~ls~~~~-~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~ 401 (590)
T PRK13409 337 RETLVEYPDLTKKLG-D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LK 401 (590)
T ss_pred CceEEEEcceEEEEC-C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------ee
Confidence 356899999999995 3 35999999999999999999999999999999999999999999885 14
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
++|+||++.++. .||+||+.++.... . ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~~--~-~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLL 477 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDDL--G-SSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQRVAIAACLSRDADLYLL 477 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhhc--C-hHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999987655 59999998753211 1 233567899999996 678999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||||++||+.++..+.+.|++++++.|+|+|+||||++++..+|||+++|+ |++...|.
T Consensus 478 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 478 DEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 999999999999999999999987668999999999999999999999996 48877665
No 327
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-45 Score=345.66 Aligned_cols=217 Identities=37% Similarity=0.557 Sum_probs=195.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..+.++|++|.|.+++++|+++||++++|+.+|++||+|+||||++++|.+++++++|.|.+||+|++......+|+-||
T Consensus 261 g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg 340 (497)
T COG5265 261 GAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIG 340 (497)
T ss_pred ceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhC
Confidence 35889999999988889999999999999999999999999999999999999999999999999999887788999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
+|||+..||+.|+..|+.++.. ...++++..+++.+.+.+ ....+++-.|||||||||+|||++++
T Consensus 341 ~VPQDtvLFNDti~yni~ygr~----~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 341 IVPQDTVLFNDTIAYNIKYGRP----DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred cCcccceehhhhHHHHHhccCc----cccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 9999999999999999999842 345566666666665532 12334566899999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
+|+||+|||.||+||..+++++...|++..+ |.|.++|.|+++.+.. ||.|+||++|+|+|.|+++++...
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~~--~rttlviahrlsti~~-adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVSA--GRTTLVIAHRLSTIID-ADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHhC--CCeEEEEeehhhhccC-CceEEEeeCCEEEecCcHHHHHHc
Confidence 9999999999999999999999999999874 8999999999999976 999999999999999999998765
No 328
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-44 Score=395.41 Aligned_cols=202 Identities=28% Similarity=0.462 Sum_probs=176.3
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc-cEEEECCEeCCCCCHHHHhc
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-GTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~-G~I~i~g~~i~~~~~~~~~~ 138 (298)
+.++++|++|+|++ ++++|+|+||+|++||.++|+||||||||||+++|+|.++|++ |+|.+ +.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~ 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RG 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cC
Confidence 36999999999964 2579999999999999999999999999999999999999999 89974 45
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHH
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAra 208 (298)
+|+||+|+|.+|+.|++|||.|+.. .++++..++++.+++.++ ..+..+..|||||||||+||||
T Consensus 680 ~Iayv~Q~p~LfngTIreNI~fg~~-----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA 754 (1622)
T PLN03130 680 TVAYVPQVSWIFNATVRDNILFGSP-----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA 754 (1622)
T ss_pred eEEEEcCccccCCCCHHHHHhCCCc-----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999999843 346778888888877432 2345577899999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~-~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++++|+|+|||||||+||+.+.+++++ .+....+ |+|+|+|||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 755 ly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~--~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 755 VYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELR--GKTRVLVTNQLHFLS-QVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhc--CCEEEEEECCHhHHH-hCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999988865 4555533 899999999999875 599999999999999999988754
No 329
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.7e-46 Score=316.49 Aligned_cols=220 Identities=26% Similarity=0.424 Sum_probs=198.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC-EeCCCCCHHHH-hcc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG-RDITDLDVLSL-RRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g-~~i~~~~~~~~-~~~ 139 (298)
+.++++|++++| ++-.+|+++||++.+||.-+|||||||||||++..|+|-.+|++|+|+++| .++.+++..++ |..
T Consensus 4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 579999999999 477899999999999999999999999999999999999999999999999 89988876555 567
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccC---------C-CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRG---------K-KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~---------~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
||--||.|..|.. ||+||+.+...... . ...+++++++|...||. +..++....||-||||++.|++.
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~-~~~~~~A~~LSHGqKQwLEIGMl 161 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-DERDRLAALLSHGQKQWLEIGML 161 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc-hhhhhhhhhhccchhhhhhhhee
Confidence 9999999999975 99999998753211 1 12345799999999997 57889999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++++|++|+||||++|+-.......-++|+.++. +.+|++|.|||.++..+|++|-||+.|.+..+|+.+++..+
T Consensus 162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 9999999999999999999999999999999975 68999999999999999999999999999999999988653
No 330
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8e-45 Score=368.00 Aligned_cols=207 Identities=26% Similarity=0.328 Sum_probs=177.1
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++||++.|+ ++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+ |.++ +
T Consensus 316 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~ 383 (635)
T PRK11147 316 GKIVFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------E 383 (635)
T ss_pred CCceEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------E
Confidence 456899999999995 567999999999999999999999999999999999999999999998 5322 5
Q ss_pred eEEEeCCC-CCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 140 VGMLFQIP-ALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 140 ig~v~Q~~-~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
+||++|++ .+++. ||.||+.++...........++.++++.+++..+..++++.+|||||||||+|||||+.+|++||
T Consensus 384 i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 384 VAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred EEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999986 46664 99999987532111111234678889999996446788999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe-CCEEEE-eeChhhh
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV-NGEIVE-VLKPDLL 282 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~-~G~i~~-~g~~~~~ 282 (298)
|||||++||+.+++.+.+.|+++ +.|||+||||.+++..+||++++|+ +|++.. .|+.+++
T Consensus 464 LDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999876 3499999999999999999999998 899875 4555554
No 331
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=4.6e-45 Score=323.17 Aligned_cols=189 Identities=21% Similarity=0.238 Sum_probs=158.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEE-ECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-LDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVV 155 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~-i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~ 155 (298)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+. +.+++.+++. |+.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~-------------~~~~~~l~~~ltv~ 67 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP-------------LGANSFILPGLTGE 67 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec-------------cccccccCCcCcHH
Confidence 379999999999999999999999999999999999999999997 7765321 2245667775 999
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
||+.+....++.. ..+....+.+.++++ ...++++.+||+|||||++|||||+.+|+++||||||+++|+.+++.+.+
T Consensus 68 enl~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~ 145 (213)
T PRK15177 68 ENARMMASLYGLD-GDEFSHFCYQLTQLE-QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA 145 (213)
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHhChh-HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence 9999865433322 122223344667786 46788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 236 VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 236 ~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
.+.+..+ ++|+|++||+++.+..+||++++|++|++++.++.++..
T Consensus 146 ~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 146 ALACQLQ--QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHhh--CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 8876544 468999999999999999999999999999999887763
No 332
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2e-44 Score=366.29 Aligned_cols=192 Identities=25% Similarity=0.402 Sum_probs=167.5
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +++++
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~ 518 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLF 518 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEE
Confidence 4799999999996556799999999999999999999999999999999999999999998753 45799
Q ss_pred EEeCCCCCCcccHHHHhHhCccccC---CCccHHHHHHHHHHcCCCchhhcCC---------CCCCChhHHHHHHHHHHH
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRG---KKLTENEVYKLLSLADLDSSFLNKT---------GGEISVGQAQRVALARTL 209 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkQRv~iAral 209 (298)
|+||++.+++.|++||+.++..... ....++++.++++.++++ ++.+++ +.+||||||||++|||||
T Consensus 519 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~-~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal 597 (659)
T TIGR00954 519 YVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLT-HILEREGGWSAVQDWMDVLSGGEKQRIAMARLF 597 (659)
T ss_pred EECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCH-HHHhhcCCcccccccccCCCHHHHHHHHHHHHH
Confidence 9999999998899999998753211 112456788999999996 445543 379999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+++|+++||||||++||+.+++.+.+.+++. |.|+|+||||++.+ ++||++++|+.
T Consensus 598 ~~~p~illLDEpts~LD~~~~~~l~~~l~~~----~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 598 YHKPQFAILDECTSAVSVDVEGYMYRLCREF----GITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 9999999999999999999999999988752 78999999999987 67999999963
No 333
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.1e-45 Score=309.52 Aligned_cols=234 Identities=26% Similarity=0.416 Sum_probs=199.6
Q ss_pred CeEEEEeEEEEeCCC--------CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH
Q 022337 62 PKFRVRELRKESDDG--------APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV 133 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--------~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~ 133 (298)
+.++++|++|.|... ..+++.|||++++|+.+||||.||||||||.|+|+|+++|++|+|.+||+.+.-.+.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 468899999877421 258999999999999999999999999999999999999999999999998864443
Q ss_pred HHHhcceEEEeCCCCC-C-cc-cHHHHhHhCccccC-CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LSLRRKVGMLFQIPAL-F-EG-TVVDNIRYGPQLRG-KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~l-~-~~-tv~eni~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
....++|-++||+|+- | |. .+.+-+..+++... .. ...+++.+-++++|+.++..+-++..||-||||||++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 3344679999999972 3 43 66666666654322 11 234568889999999877889999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh-ccC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS-EAK 286 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~-~~~ 286 (298)
||+.+|+|+|.||..++||..-+.++.++..++.++.|.+.|+|+.++..+..++|.|+||++|++++.|++.++. .+.
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~ 242 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPL 242 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988875 456
Q ss_pred ChHHHHHhh
Q 022337 287 HPMALRFLQ 295 (298)
Q Consensus 287 ~~~~~~~~~ 295 (298)
++..+.+.+
T Consensus 243 ~~~TkRlie 251 (267)
T COG4167 243 HELTKRLIE 251 (267)
T ss_pred cHHHHHHHH
Confidence 776665543
No 334
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=367.05 Aligned_cols=203 Identities=24% Similarity=0.351 Sum_probs=176.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++|+++|+++.|+ ++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++. .+
T Consensus 309 ~~~~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 376 (638)
T PRK10636 309 PNPLLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IK 376 (638)
T ss_pred CCceEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EE
Confidence 456899999999995 567999999999999999999999999999999999999999999999641 25
Q ss_pred eEEEeCCC--CCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIP--ALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||++|++ .+.+ .|+.+++.... .....+++.++++.+++..+..++++.+|||||||||+|||+|+.+|++|
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL 452 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLARLA----PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL 452 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHHhC----chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999975 3444 38888764211 11234568899999999644678999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
||||||++||+.++..+.+.|.++ . | |||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 453 lLDEPt~~LD~~~~~~l~~~L~~~--~-g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 453 LLDEPTNHLDLDMRQALTEALIDF--E-G-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHc--C-C-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 999999999999999999999987 2 5 9999999999999999999999999997 67887776
No 335
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-45 Score=322.78 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=188.8
Q ss_pred CCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHh
Q 022337 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLR 137 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~ 137 (298)
..++.|+++|++.+| +++++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+.....+. .++|
T Consensus 27 ~~~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elr 105 (257)
T COG1119 27 INEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105 (257)
T ss_pred CCcceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHH
Confidence 345679999999999 47899999999999999999999999999999999999999999999999999876555 7899
Q ss_pred cceEEEeCCCC--CCc-ccHHHHhHhCcc----ccCCC---ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 138 RKVGMLFQIPA--LFE-GTVVDNIRYGPQ----LRGKK---LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 138 ~~ig~v~Q~~~--l~~-~tv~eni~~~~~----~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
++||+|.-.-. +.+ .+++|-+.-+.. ++... ...+++..+++.+|+. ++.+++..+||-||||||.|||
T Consensus 106 k~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~-~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK-HLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh-hhccCchhhcCHhHHHHHHHHH
Confidence 99999975432 233 388888875532 11111 1235678899999996 6899999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKK-HGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~-~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||+.+|++|||||||+|||..+++.+.+.|.+++.. .+.++|+|||..+++....++++.+++|+++..|.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999998743 36789999999999999999999999999998763
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2e-44 Score=367.88 Aligned_cols=205 Identities=24% Similarity=0.305 Sum_probs=172.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|++++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++ +.++
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 46899999999995445699999999999999999999999999999999999999999999864 2369
Q ss_pred EEEeCCCCCCcccHHHHhHhCc-cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFEGTVVDNIRYGP-QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||++|++. ...++.+|..+.. ... ....++++.++++.+++.....++++.+|||||||||+|||||+.+|++||||
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~-~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLD 652 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD 652 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhc-CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999862 2234544533211 111 11235678899999999644678899999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
|||++||+.+++.+.+.|.++ + | |||+||||++++..+||++++|++|+++ ..|+.+++
T Consensus 653 EPT~~LD~~s~~~l~~~L~~~--~-g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 653 EPSNHLDLDAVEALIQGLVLF--Q-G-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCCCHHHHHHHHHHHHHc--C-C-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999988765 2 4 9999999999999999999999999998 56766554
No 337
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.4e-43 Score=386.43 Aligned_cols=203 Identities=27% Similarity=0.429 Sum_probs=174.1
Q ss_pred eEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++++|+++.|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~ 702 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVA 702 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEE
Confidence 69999999999643 4799999999999999999999999999999999999999999999987 499
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|++|+|.+++.|++|||.++... ++++..++++.+++.+ ...++++.+||||||||++||||++.
T Consensus 703 yv~Q~~~l~~~Ti~eNI~~g~~~-----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~ 777 (1522)
T TIGR00957 703 YVPQQAWIQNDSLRENILFGKAL-----NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 777 (1522)
T ss_pred EEcCCccccCCcHHHHhhcCCcc-----CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999997432 2233344444333321 23456788999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLK-KKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~-~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|+++|||||||+||+.+++.+++.+.+.. ...++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 778 ~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 778 NADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeCCHHHHHh
Confidence 999999999999999999999999997531 1237999999999999865 99999999999999999988754
No 338
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.8e-44 Score=364.28 Aligned_cols=202 Identities=29% Similarity=0.410 Sum_probs=178.2
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG 152 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~ 152 (298)
++++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.+||.++. ...+++.+||++|++.+++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 467999999999999999999999999999999999999885 899999999874 24567889999999998875
Q ss_pred -cHHHHhHhCccccCC---C--ccHHHHHHHHHHcCCCchhhcCCCC------CCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 153 -TVVDNIRYGPQLRGK---K--LTENEVYKLLSLADLDSSFLNKTGG------EISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 153 -tv~eni~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
||+||+.|+...+.. . ..+++++++++.+|+. +..+..++ .|||||||||+|||||+.+|++++|||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 999999987644321 1 1234588999999996 45666665 599999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||+|||+.++..+++.|++++++ |+|+|+++|+++ .+.++||++++|++|++++.|+++++
T Consensus 193 PtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 193 PTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred CCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 99999999999999999999764 999999999995 78889999999999999999998875
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-44 Score=361.99 Aligned_cols=204 Identities=22% Similarity=0.273 Sum_probs=167.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
||+++||+++|+ ++.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++|
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~ 68 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAW 68 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEE
Confidence 589999999994 5689999999999999999999999999999999999999999999998742 3677
Q ss_pred EeCCCCCCcccHHHHhHhCc-----------------------ccc------CCCccHHHHHHHHHHcCCCchhhcCCCC
Q 022337 143 LFQIPALFEGTVVDNIRYGP-----------------------QLR------GKKLTENEVYKLLSLADLDSSFLNKTGG 193 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~-----------------------~~~------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 193 (298)
++|++..+..++.+++.... ... +....+.++.++++.+|+..+..++++.
T Consensus 69 ~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 69 VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred EecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 77754333234333322100 000 0011235688899999996345788999
Q ss_pred CCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 194 EISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||.+++..+||++++|++|++
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999998875 46999999999999999999999999999
Q ss_pred EE-eeChhhh
Q 022337 274 VE-VLKPDLL 282 (298)
Q Consensus 274 ~~-~g~~~~~ 282 (298)
+. .|+.+.+
T Consensus 225 ~~~~g~~~~~ 234 (638)
T PRK10636 225 FEYTGNYSSF 234 (638)
T ss_pred EEecCCHHHH
Confidence 64 5666554
No 340
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=6.9e-44 Score=297.34 Aligned_cols=144 Identities=35% Similarity=0.547 Sum_probs=135.7
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
++++|++++|+ +.++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ +.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYG-GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYF 68 (144)
T ss_pred CEEEEEEEEEC-CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEE
Confidence 47899999995 457999999999999999999999999999999999999999999999984 368999
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS 223 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts 223 (298)
|| ||+||+||++|||||+.+|+++||||||+
T Consensus 69 ~~-------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 69 EQ-------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred cc-------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 98 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 224 ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 224 ~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+||+.++..+.+.|+++ +.|+|++||+++.+..+||++++|++|+
T Consensus 100 ~LD~~~~~~l~~~l~~~----~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 100 HLDLESIEALEEALKEY----PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999876 4699999999999999999999999985
No 341
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-44 Score=311.04 Aligned_cols=216 Identities=29% Similarity=0.427 Sum_probs=185.7
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
|+++.|+.+.|..+ +++|+++|++|++|+++.|+|.||||||||++.|+|-+.|++|+|.|+|.++.+++......
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 46677787777544 46999999999999999999999999999999999999999999999999999998877777
Q ss_pred ceEEEeCCCC--CCc-ccHHHHhHhCccc---cCCCc-----cHHHHHHHHHHcC--CCchhhcCCCCCCChhHHHHHHH
Q 022337 139 KVGMLFQIPA--LFE-GTVVDNIRYGPQL---RGKKL-----TENEVYKLLSLAD--LDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 139 ~ig~v~Q~~~--l~~-~tv~eni~~~~~~---~~~~~-----~~~~~~~~l~~~~--l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
.++-|||+|. .++ .|+.||+.+.... ++... ..+...+.+..++ ++ ..++.+..-|||||||-+++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhccchHHHHHHH
Confidence 8999999995 455 5999999986321 11111 1233455566654 44 46778899999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeCh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~ 279 (298)
+.|-++.|+||+|||-|++|||+....+++.=.++.++.+.|.+||||.|+.+.+|.+|.++|++|+|+.+-+.
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g 233 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTG 233 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEccc
Confidence 99999999999999999999999999999999999888899999999999999999999999999999987543
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.6e-44 Score=386.39 Aligned_cols=214 Identities=27% Similarity=0.411 Sum_probs=185.2
Q ss_pred CeEEEEeEEEEeC---CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHH
Q 022337 62 PKFRVRELRKESD---DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE---PPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 62 ~~l~~~~l~~~y~---~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~---p~~G~I~i~g~~i~~~~~~~ 135 (298)
.+++++||++.|+ +++.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++.. .
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----~ 833 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----S 833 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh----h
Confidence 3589999999984 23579999999999999999999999999999999999998 789999999999742 4
Q ss_pred HhcceEEEeCCCCCCc-ccHHHHhHhCccccC---CC--ccHHHHHHHHHHcCCCchhhcCCCC----CCChhHHHHHHH
Q 022337 136 LRRKVGMLFQIPALFE-GTVVDNIRYGPQLRG---KK--LTENEVYKLLSLADLDSSFLNKTGG----EISVGQAQRVAL 205 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkQRv~i 205 (298)
+++.+|||+|++.+++ .||+||+.++...+. .. ...++++++++.+++. +..++.++ .||||||||++|
T Consensus 834 ~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~I 912 (1394)
T TIGR00956 834 FQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTI 912 (1394)
T ss_pred hhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHH
Confidence 6788999999987766 599999998754332 11 1234578999999996 56777776 799999999999
Q ss_pred HHHHcCCCC-eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH-HHhhcCEEEEEeCC-EEEEeeChhh
Q 022337 206 ARTLANEPE-VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ-IQRIADVVCLLVNG-EIVEVLKPDL 281 (298)
Q Consensus 206 Aral~~~p~-illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~-~~~~~d~v~vl~~G-~i~~~g~~~~ 281 (298)
||||+.+|+ +|+|||||+|||+.++..+++.|++++++ |+|||+++|+++. +.+.||++++|++| ++++.|++.+
T Consensus 913 a~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 913 GVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 999999997 99999999999999999999999999764 9999999999986 45679999999997 9999998743
No 343
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-43 Score=306.77 Aligned_cols=217 Identities=29% Similarity=0.445 Sum_probs=191.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHH-hc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPSGTVFLDGRDITDLDVLSL-RR 138 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~G~I~i~g~~i~~~~~~~~-~~ 138 (298)
.+++++||+.+-.+.+.+|+++||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|+||..+++.+. |.
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47999999999853358999999999999999999999999999999999985 7899999999999999988765 56
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCccccCC-----CccHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHHHHHHcC
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGK-----KLTENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVALARTLAN 211 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~iAral~~ 211 (298)
.+...||.|.=+++ ++.+.+..+...... ....+++.+.++.+++++.+++|++. .+|||||+|..|+.+++.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l 161 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL 161 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence 69999999988887 999999876432111 12346688899999998778888876 599999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc--CEEEEEeCCEEEEeeChh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA--DVVCLLVNGEIVEVLKPD 280 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~--d~v~vl~~G~i~~~g~~~ 280 (298)
+|++.|||||-||||..+-+.+.+.+.++..+ |.++++|||.-..+. +. |+|.+|.+|+|+..|.++
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~-~~~~liITHy~rll~-~i~pD~vhvl~~GrIv~sG~~e 230 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAEGINALREE-GRGVLIITHYQRLLD-YIKPDKVHVLYDGRIVKSGDPE 230 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHHHHHHHhcC-CCeEEEEecHHHHHh-hcCCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999765 999999999987664 55 999999999999999994
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1e-43 Score=305.95 Aligned_cols=166 Identities=23% Similarity=0.272 Sum_probs=143.4
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCC
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI 146 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~ 146 (298)
.|++++|+ ++.++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++|+
T Consensus 4 ~~l~~~~~-~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYG-VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQY 69 (177)
T ss_pred CCeEEEEC-CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEccc
Confidence 58899995 5678988 49999999999999999999999999999999999999999853 7888885
Q ss_pred CCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCC
Q 022337 147 PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 147 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD 226 (298)
+. ||||||||++|||||+.+|+++||||||++||
T Consensus 70 ~~----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 70 ID----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred CC----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 42 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe--eChhhhhccCChHHHH
Q 022337 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV--LKPDLLSEAKHPMALR 292 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~--g~~~~~~~~~~~~~~~ 292 (298)
+.+++.+.+.+.+++++.+.|+|++|||++.+..+||++++|+++-.+.. |.|....++.+.+...
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRG 171 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhHHHHHHHHh
Confidence 99999999999998765348999999999999999999999998866533 5555444433333333
No 345
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.6e-43 Score=369.72 Aligned_cols=221 Identities=31% Similarity=0.522 Sum_probs=198.4
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
...|+++|++.+|..+ ..||+||||+|++||.+||||+.|||||||+++|.++..|.+|+|.|||.|+.++...++|++
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhc
Confidence 4469999999999765 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchh----------hcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSF----------LNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkQRv~iAral 209 (298)
++++||+|.+|++|+|.|+.=. ...+++++.++|+.++|.+.. ..+.+.++|-||||.+++||||
T Consensus 1216 lsIIPQdPvLFsGTvR~NLDPf-----~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFSGTVRFNLDPF-----DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred CeeeCCCCceecCccccccCcc-----cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 9999999999999999999611 123577889999988875321 2233578999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+++++||+|||+||+.|+.+-..+.+.|++--+ ++|||.|.|+++.+.+ ||||+||++|+++|.++|.++.+..+..
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~Ll~~~~S~ 1367 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAELLSDKDSL 1367 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHHHHhCCcch
Confidence 999999999999999999999999999998765 7999999999999987 8999999999999999999998765543
No 346
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2e-42 Score=376.64 Aligned_cols=187 Identities=28% Similarity=0.464 Sum_probs=160.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++.+|+.|++||
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eN 506 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDN 506 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHH
Confidence 589999999999999999999999999999999999999999999987 3999999999999999999
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCH
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDP 227 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~ 227 (298)
|.|+... +.++..++++.+++.+ ...++++.+|||||||||+||||++.+|+++||||||++||+
T Consensus 507 I~~g~~~-----~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 507 IIFGLSY-----DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred HHhcccc-----chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 9998532 1122223333333211 134566889999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 228 ISTQNIEDV-LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 228 ~~~~~~~~~-l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
.+++.+++. +.++.+ |+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 582 ~~~~~i~~~~l~~~~~--~~tvilvtH~~~~~~-~ad~ii~l~~g~i~~~g~~~~l~~~ 637 (1490)
T TIGR01271 582 VTEKEIFESCLCKLMS--NKTRILVTSKLEHLK-KADKILLLHEGVCYFYGTFSELQAK 637 (1490)
T ss_pred HHHHHHHHHHHHHHhc--CCeEEEEeCChHHHH-hCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999985 666643 899999999999986 5999999999999999999887643
No 347
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.1e-44 Score=318.80 Aligned_cols=205 Identities=30% Similarity=0.442 Sum_probs=175.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEe-CCCCCCc-ccHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLF-QIPALFE-GTVV 155 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~-Q~~~l~~-~tv~ 155 (298)
++++|+||+|++|++++++|||||||||++|+|+|++.|++|.|.++|.+..+ +.+++-+++++|+ |...++. ..+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 58999999999999999999999999999999999999999999999998654 3445566788875 4444543 3555
Q ss_pred HHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH
Q 022337 156 DNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233 (298)
Q Consensus 156 eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~ 233 (298)
|-+.....++..+. -.++...+.+.++++ .+.+.+++.||-|||.|+.||.||+++|+||+|||||-|||..++..+
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLE-GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 55544322333322 246677888999997 578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 234 EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 234 ~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
.+.|++++++++.||+++||+++.+..+||||+.|+.|+++.+|+.+++.+
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 999999999999999999999999999999999999999999999877644
No 348
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-43 Score=295.90 Aligned_cols=232 Identities=28% Similarity=0.446 Sum_probs=192.8
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE-----eCCCCCHH
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR-----DITDLDVL 134 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~-----~i~~~~~~ 134 (298)
..|.++++++++.|+ .....+|+||++.|||+.+|+|+||||||||++||++-+.|+.|+|.+.-. ++..++..
T Consensus 3 ~~PLL~V~~lsk~Yg-~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 3 DKPLLSVSGLSKLYG-PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred CCcceeehhhhhhhC-CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 356899999999995 456899999999999999999999999999999999999999999999653 23233322
Q ss_pred HH----hcceEEEeCCCC--CCc-----ccHHHHhH-hCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH
Q 022337 135 SL----RRKVGMLFQIPA--LFE-----GTVVDNIR-YGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR 202 (298)
Q Consensus 135 ~~----~~~ig~v~Q~~~--l~~-----~tv~eni~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR 202 (298)
+. |-.-|+|.|+|. +-. .++-|-++ .+.+.++ ..++.+.++++.+.++....|..|.++||||+||
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG--~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG--NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh--hHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 22 345899999995 211 13444333 3333332 2356688899999998777888999999999999
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+.|||-|+..|+++++||||.|||...+.+++++++.+..+.|.+++++|||+..+.-++||.++|++|++++.|-.+.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred h-ccCChHHHHHh
Q 022337 283 S-EAKHPMALRFL 294 (298)
Q Consensus 283 ~-~~~~~~~~~~~ 294 (298)
. ++.|+|...+.
T Consensus 240 LDDP~hPYTQLLV 252 (258)
T COG4107 240 LDDPHHPYTQLLV 252 (258)
T ss_pred ccCCCCchHHHHH
Confidence 5 45677766544
No 349
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-42 Score=292.51 Aligned_cols=156 Identities=43% Similarity=0.714 Sum_probs=145.9
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
++|+++.|+ ++++++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++.++|+||
T Consensus 2 ~~~~~~~~~-~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 679999995 4579999999999999999999999999999999999999999999999998876555566788999999
Q ss_pred CCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 146 IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 146 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
||+||+||++||||++.+|++++|||||++|
T Consensus 81 -------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l 111 (157)
T cd00267 81 -------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
|+.++..+.+.+.++.++ ++|++++||+++.+..+||+++++++|+
T Consensus 112 D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 112 DPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999998765 7999999999999999999999999875
No 350
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.3e-42 Score=351.98 Aligned_cols=202 Identities=28% Similarity=0.344 Sum_probs=164.1
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+|+++|++++|+ ++.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++
T Consensus 2 ~~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 2 SLISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred cEEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 3799999999995 5689999999999999999999999999999999999999999999998631 145
Q ss_pred EEeCCCCCCc-ccHHHHh------------------------------HhCccc------cCCCccHHHHHHHHHHcCCC
Q 022337 142 MLFQIPALFE-GTVVDNI------------------------------RYGPQL------RGKKLTENEVYKLLSLADLD 184 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni------------------------------~~~~~~------~~~~~~~~~~~~~l~~~~l~ 184 (298)
+++|.+.... .++.+++ .+.... ........++.++++.+|+.
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 5555432111 2333332 111000 00011245678899999995
Q ss_pred chhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 185 SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 185 ~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||.+++..+||+
T Consensus 150 ---~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 150 ---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred ---CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCHHHHHHhcCe
Confidence 27889999999999999999999999999999999999999999999999987 24999999999999999999
Q ss_pred EEEEeCCEEEE-eeChhhh
Q 022337 265 VCLLVNGEIVE-VLKPDLL 282 (298)
Q Consensus 265 v~vl~~G~i~~-~g~~~~~ 282 (298)
|++|++|+++. .|+.+++
T Consensus 223 i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEEECCEEEEecCCHHHH
Confidence 99999999974 5776654
No 351
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.7e-42 Score=374.77 Aligned_cols=213 Identities=23% Similarity=0.290 Sum_probs=182.7
Q ss_pred eEEEEeEEEEeC------------CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeC
Q 022337 63 KFRVRELRKESD------------DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDI 128 (298)
Q Consensus 63 ~l~~~~l~~~y~------------~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i 128 (298)
.+..+||++..+ +++.+|+|+|+++++|+++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999998763 123699999999999999999999999999999999999874 789999999875
Q ss_pred CCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccC---CC--ccHHHHHHHHHHcCCCchhhcCCC-----CCCCh
Q 022337 129 TDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRG---KK--LTENEVYKLLSLADLDSSFLNKTG-----GEISV 197 (298)
Q Consensus 129 ~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSg 197 (298)
.. ...++.+||++|++.+++. ||+||+.|+...+. .. ...++++++++.++|. +..++.+ ..|||
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCH
Confidence 42 3456789999999988874 99999998753321 11 1124578999999996 5677765 58999
Q ss_pred hHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeC-CEEEE
Q 022337 198 GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVN-GEIVE 275 (298)
Q Consensus 198 GqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~-G~i~~ 275 (298)
||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ .+...||++++|++ |+++.
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~ 1101 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEE
Confidence 9999999999999999999999999999999999999999999765 999999999998 47789999999996 89999
Q ss_pred eeChh
Q 022337 276 VLKPD 280 (298)
Q Consensus 276 ~g~~~ 280 (298)
.|++.
T Consensus 1102 ~G~~~ 1106 (1470)
T PLN03140 1102 SGPLG 1106 (1470)
T ss_pred ECCcc
Confidence 99864
No 352
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.3e-43 Score=351.14 Aligned_cols=192 Identities=26% Similarity=0.360 Sum_probs=164.2
Q ss_pred EEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEE-----------ECCEeCCCCCHH--H
Q 022337 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-----------LDGRDITDLDVL--S 135 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~-----------i~g~~i~~~~~~--~ 135 (298)
++++|+++..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|+++..+... .
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~ 157 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYN 157 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhc
Confidence 7899964456999999 8999999999999999999999999999999999997 899887543211 1
Q ss_pred HhcceEEEeC----CCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 136 LRRKVGMLFQ----IPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 136 ~~~~ig~v~Q----~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
.+.++++.+| .|.+|..||.||+.+. ...+++.++++.+++. +..++++.+|||||||||+||+||+.
T Consensus 158 ~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~-------~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 158 GEIKVVHKPQYVDLIPKVFKGKVRELLKKV-------DERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLR 229 (590)
T ss_pred cCcceeecccchhhhhhhhcchHHHHHHhh-------hHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 1223555555 4445556999998742 1345688999999996 57899999999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
+|++|||||||++||+.++..+.+.|+++++ |+|||+||||++.+..+||++++|+++
T Consensus 230 ~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999964 899999999999999999999999873
No 353
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=9.8e-42 Score=301.06 Aligned_cols=195 Identities=30% Similarity=0.398 Sum_probs=170.6
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
.++|+||||++++||.+||||+||||||||+|+|+|.++|++|+|.++|+--.-+ --..|+-| +.|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li-----~lg~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLI-----ELGAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhh-----hcccCCCc------ccchHH
Confidence 4699999999999999999999999999999999999999999999999642111 11223322 259999
Q ss_pred HhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHH
Q 022337 157 NIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 157 ni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~ 234 (298)
|+.+...+.+.. +.+++++++.+..+|. ++.+.++.++|.||+-|+++|-|...+|+|||+||-.+..|+.-++.-.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 999876555543 3356788899999995 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 235 ~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+.++.++ ++|||+||||++.+.++|||+++|++|+++..|+++++.+
T Consensus 188 ~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 188 ERLNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHHc-CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 999999665 7999999999999999999999999999999999998755
No 354
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.4e-42 Score=370.96 Aligned_cols=204 Identities=19% Similarity=0.186 Sum_probs=174.4
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC----CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW----EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG 152 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~----~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~ 152 (298)
+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++.+.+ ...|+.++|++|++.+++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999996 579999999999875432 2346679999999988875
Q ss_pred -cHHHHhHhCccccC-------CCcc--HHH-HHHHHHHcCCCchhhcC-----CCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 153 -TVVDNIRYGPQLRG-------KKLT--ENE-VYKLLSLADLDSSFLNK-----TGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 153 -tv~eni~~~~~~~~-------~~~~--~~~-~~~~l~~~~l~~~~~~~-----~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
||+||+.|+...+. .... .++ ++++++.+||. +..++ .+..|||||||||+||+||+.+|+++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 99999998754321 1111 122 35678999996 44554 45789999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH-HHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~-~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+|||||+|||+.++..+++.|++++++.|+|+|+++|++ +.+.+++|++++|++|+++..|+++++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 999999999999999999999999876689999999996 688899999999999999999998765
No 355
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.3e-41 Score=291.16 Aligned_cols=157 Identities=28% Similarity=0.345 Sum_probs=135.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
.++|+|+||+|++|++++|+||||||||||||++. +++|+|.++|.. ... .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 47999999999999999999999999999999985 479999998762 111 1345788877
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC--CCeEEEeCcCCCCCHHHHHHHH
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~--p~illLDEPts~LD~~~~~~~~ 234 (298)
.++++.+++.....++++.+||||||||++|||||+.+ |+++||||||++||+.+++.+.
T Consensus 68 ------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~ 129 (176)
T cd03238 68 ------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL 129 (176)
T ss_pred ------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH
Confidence 24678888853236888999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 235 DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 235 ~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
+.|+++++ .|.|||++||+++.+ ..||++++|++|+.
T Consensus 130 ~~l~~~~~-~g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 130 EVIKGLID-LGNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHh-CCCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 99999865 499999999999987 57999999977654
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.1e-42 Score=280.91 Aligned_cols=200 Identities=30% Similarity=0.472 Sum_probs=174.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++.++||+.+-+ +...|.++||+|.+||++.|+||||||||||+.-+.|.+.++ +|+++++++++...+ .-+|+
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP--a~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP--AAQRQ 78 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc--hhhhh
Confidence 578999998874 678999999999999999999999999999999999999885 799999999997765 34789
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcc--ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQ--LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+|++||++.+||. +|.+|+.|... .++. ..+..+..++++.|++ ...++.|.+||||||-||++-|+|+..|+.+
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~-aRr~~a~aAL~~~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l 156 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGN-ARRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKAL 156 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccH-HHHhhHHHHHHHhccc-hhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence 9999999999996 99999998753 3332 2345578899999997 4789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
+||||+|.||...+.++.+....-.+..|..+|+||||...+. ...||+-|
T Consensus 157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~ 207 (213)
T COG4136 157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEM 207 (213)
T ss_pred eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeee
Confidence 9999999999999999999987666667999999999999886 34555443
No 357
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.2e-41 Score=345.54 Aligned_cols=217 Identities=22% Similarity=0.263 Sum_probs=170.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC---CCCccEEEECCEeCCCC--CH--
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW---EPPSGTVFLDGRDITDL--DV-- 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~---~p~~G~I~i~g~~i~~~--~~-- 133 (298)
..+|+++|++++|+ ++.+|+|+||+|.+|+++|||||||||||||||+|+|.. .|++|+|.+.++++... +.
T Consensus 175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 44799999999995 567999999999999999999999999999999999964 68999998766543211 11
Q ss_pred ----------HHHhcceEEEeCCCCCCcccHHHHhHhCcc--------------------ccCCCccHHHHHHHHHHcCC
Q 022337 134 ----------LSLRRKVGMLFQIPALFEGTVVDNIRYGPQ--------------------LRGKKLTENEVYKLLSLADL 183 (298)
Q Consensus 134 ----------~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~--------------------~~~~~~~~~~~~~~l~~~~l 183 (298)
..+++.+++++|++.+...++.+|...... ..+....++++.+++..+|+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 012345788888765432222222111000 00011234567788899999
Q ss_pred CchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 184 DSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 184 ~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
..+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++ +.|+|+||||.+.+..+||
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHHHHhCC
Confidence 645678899999999999999999999999999999999999999999999999876 6799999999999999999
Q ss_pred EEEEEeCCEEE-EeeChhhh
Q 022337 264 VVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 264 ~v~vl~~G~i~-~~g~~~~~ 282 (298)
++++|++|++. ..|+.+.+
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEEECCEEEEeCCCHHHH
Confidence 99999999996 56766544
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.5e-41 Score=367.36 Aligned_cols=203 Identities=25% Similarity=0.291 Sum_probs=174.8
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-c
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-G 152 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~ 152 (298)
+.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.+||+++.+.. .++.++|++|++.+++ .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 46999999999999999999999999999999999999998 999999999885432 2678999999998887 4
Q ss_pred cHHHHhHhCccccCC----------CccH--------------------------HHHHHHHHHcCCCchhh-----cCC
Q 022337 153 TVVDNIRYGPQLRGK----------KLTE--------------------------NEVYKLLSLADLDSSFL-----NKT 191 (298)
Q Consensus 153 tv~eni~~~~~~~~~----------~~~~--------------------------~~~~~~l~~~~l~~~~~-----~~~ 191 (298)
||+||+.|+...++. ...+ ..++++++.+||+ +.. ++.
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~-~~~~t~vg~~~ 333 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLD-ICKDTIVGDEM 333 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCc-cccCceeCCcc
Confidence 999999987543210 0000 1245688999996 333 556
Q ss_pred CCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH-HHHHhhcCEEEEEeC
Q 022337 192 GGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCLLVN 270 (298)
Q Consensus 192 ~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~-~~~~~~~d~v~vl~~ 270 (298)
++.|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|+|+++|++ +++.++||+|++|++
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~ 413 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE 413 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC
Confidence 7899999999999999999999999999999999999999999999999875689999999996 578899999999999
Q ss_pred CEEEEeeChhhhh
Q 022337 271 GEIVEVLKPDLLS 283 (298)
Q Consensus 271 G~i~~~g~~~~~~ 283 (298)
|+++..|+++++.
T Consensus 414 G~ivy~G~~~~~~ 426 (1470)
T PLN03140 414 GQIVYQGPRDHIL 426 (1470)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999987653
No 359
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.7e-40 Score=357.57 Aligned_cols=187 Identities=28% Similarity=0.388 Sum_probs=158.3
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ ++|||++|++.+++.|++|
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~e 739 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRG 739 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHH
Confidence 469999999999999999999999999999999999999999999762 4699999999999899999
Q ss_pred HhHhCccccCCCccHHHHHH---------HHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 157 NIRYGPQLRGKKLTENEVYK---------LLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
||.++... +.++..+ .++.+ |++ ...++++.+|||||||||+|||||+.+|+++||||||++|
T Consensus 740 nI~~~~~~-----~~~~~~~~~~~~~l~~~l~~l~~g~~-t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 740 NILFFDEE-----DAARLADAVRVSQLEADLAQLGGGLE-TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHcCChh-----hHHHHHHHHHHhhhHHHHHHhhccch-HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 99986421 1222222 33333 554 4567889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 226 DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|+..++.+++.+..... .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 814 D~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 814 DAHVGERVVEECFLGAL-AGKTRVLATHQVHVVP-RADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred CHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEecCHHHHHh
Confidence 99999988875432222 3899999999999985 699999999999999999888754
No 360
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.9e-40 Score=345.26 Aligned_cols=205 Identities=31% Similarity=0.474 Sum_probs=181.0
Q ss_pred CCCeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 60 QKPKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
.++.++++|.++..++ ..+.|+||||+|++|+.+||+||-|||||+||..|+|-++..+|+|.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----------
Confidence 4557999999999864 235999999999999999999999999999999999999999999999884
Q ss_pred cceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHH
Q 022337 138 RKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAr 207 (298)
++|++|.|.++++||+|||.||. +.++++.++.++.+.|+++ ...+++-+|||||||||++||
T Consensus 584 --iaYv~Q~pWI~ngTvreNILFG~-----~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLAR 656 (1381)
T KOG0054|consen 584 --VAYVPQQPWIQNGTVRENILFGS-----PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLAR 656 (1381)
T ss_pred --EEEeccccHhhCCcHHHhhhcCc-----cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHH
Confidence 89999999999999999999985 3456778888888877543 245678899999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|++++++|+|||.|+|++|....+++++...+-.- +++|+|+|||.+..+. .||.|++|++|+|.+.|+.+++.+
T Consensus 657 AVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql~~L~-~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 657 AVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQLQFLP-HADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCchhhhh-hCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999999999999999998887654333 3899999999999885 599999999999999999998864
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=3.7e-40 Score=324.75 Aligned_cols=203 Identities=32% Similarity=0.398 Sum_probs=174.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+|+++|+++.| +++.+|+++||+|.+|+.+||||+||||||||||+|+|...|++|+|...+. -+++
T Consensus 2 ~~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~ 69 (530)
T COG0488 2 SMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVG 69 (530)
T ss_pred ceEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEE
Confidence 479999999999 5788999999999999999999999999999999999999999999987541 2599
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccc-cCC-------------------------------CccHHHHHHHHHHcCCCchhh
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQL-RGK-------------------------------KLTENEVYKLLSLADLDSSFL 188 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~-~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~ 188 (298)
|++|++.+.+. ||.+.+..+..- ... ...+.++..++..+|+.. .
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~-~- 147 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD-E- 147 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc-c-
Confidence 99999998875 999988765320 000 001245667788888864 3
Q ss_pred cCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
+++..+||||||.||+||+||+.+|++|||||||++||..+..-+-+.|+++ .| |+|+||||-.++.+.|++|+.+
T Consensus 148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 8899999999999999999999999999999999999999999999999876 27 9999999999999999999999
Q ss_pred eCCEEEE-eeChhhh
Q 022337 269 VNGEIVE-VLKPDLL 282 (298)
Q Consensus 269 ~~G~i~~-~g~~~~~ 282 (298)
+.|++.. .|..+.+
T Consensus 224 d~g~l~~y~Gny~~~ 238 (530)
T COG0488 224 DRGKLTPYKGNYSSY 238 (530)
T ss_pred cCCceeEecCCHHHH
Confidence 9998864 4555544
No 362
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.9e-40 Score=328.81 Aligned_cols=215 Identities=34% Similarity=0.500 Sum_probs=189.5
Q ss_pred eEEEEeEEEEeCCC----CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC---CccEEEECCEeCCCCCHHH
Q 022337 63 KFRVRELRKESDDG----APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP---PSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~----~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p---~~G~I~i~g~~i~~~~~~~ 135 (298)
.+..++++....+. +.+|+|||.++++||+.||+|||||||||||++|+|.... .+|+|.+||+.. +.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~---~~~~ 101 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR---DSRS 101 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC---chhh
Confidence 47888888776543 5799999999999999999999999999999999999975 789999999654 3456
Q ss_pred HhcceEEEeCCCCCCcc-cHHHHhHhCccccCC-----CccHHHHHHHHHHcCCCchhhcCCCC-----CCChhHHHHHH
Q 022337 136 LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGK-----KLTENEVYKLLSLADLDSSFLNKTGG-----EISVGQAQRVA 204 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkQRv~ 204 (298)
+++..|||.|+..+++. ||+|++.|.+.++-. ...+++++++++.+|+. +..|..++ .+|||||+||+
T Consensus 102 ~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 102 FRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred hhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHH
Confidence 78899999999999985 999999998654322 12356799999999996 56777765 59999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||.-|+++|.||+|||||+|||..+..++++.|++++++ |+|||++-|.+. .+.++.|++++|.+|+++..|++++.
T Consensus 181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL 258 (613)
T ss_pred HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH
Confidence 999999999999999999999999999999999999987 999999999995 67888999999999999999998764
No 363
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=9.5e-40 Score=340.79 Aligned_cols=221 Identities=29% Similarity=0.521 Sum_probs=199.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC-CHHHHhcce
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL-DVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~-~~~~~~~~i 140 (298)
..+.++|+++.|+..+.+++++||.|++||+.|+.|+|||||||++|+|.|..+|++|+++++|.++... +..+.++.+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4689999999996433399999999999999999999999999999999999999999999999998653 233478899
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
||.||...+++. |.+|.+.+.++.+|.+. -.+.++.+++.+++. +..++..+.+|||+|+|+++|.|++.+|++++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~vi~ 721 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSVIL 721 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCEEE
Confidence 999999999985 99999999888777543 234588899999997 57899999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|||||+|+||.+++.+++++.++.++ |+++|++||.|++++.+|||+.+|.+|++...|++.++..
T Consensus 722 LDEPstGmDP~arr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 722 LDEPSTGLDPKARRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999999999999764 6699999999999999999999999999999999988753
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-40 Score=277.79 Aligned_cols=191 Identities=25% Similarity=0.425 Sum_probs=167.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++.+|++... ++..++.++||++.+||++-|.||||||||||||+|+|+.+|++|+|+++|.++.... +.+++.+-|
T Consensus 2 ~L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~y 79 (209)
T COG4133 2 MLEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLY 79 (209)
T ss_pred cchhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHH
Confidence 57788999876 5678999999999999999999999999999999999999999999999999887543 345677788
Q ss_pred EeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
+--.+.+=+ .|+.||+.|...+++. ...+.+.++++.+||. .+.|.++++||-|||+||+|||-++..++++|||||
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~-~~~~~i~~Al~~vgL~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGS-GNAATIWEALAQVGLA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCC-CchhhHHHHHHHcCcc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 877776654 5999999997665543 3456789999999997 588999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
|++||+.....+-.++..-+.+ |-.||.+||..-.+
T Consensus 158 ~taLDk~g~a~l~~l~~~H~~~-GGiVllttHq~l~~ 193 (209)
T COG4133 158 FTALDKEGVALLTALMAAHAAQ-GGIVLLTTHQPLPI 193 (209)
T ss_pred ccccCHHHHHHHHHHHHHHhcC-CCEEEEecCCccCC
Confidence 9999999999999999887765 77899999997654
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=272.57 Aligned_cols=207 Identities=26% Similarity=0.405 Sum_probs=173.7
Q ss_pred eEEEEeEEEEeC----CCC--cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE----eCCCCC
Q 022337 63 KFRVRELRKESD----DGA--PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR----DITDLD 132 (298)
Q Consensus 63 ~l~~~~l~~~y~----~~~--~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~----~i~~~~ 132 (298)
.+.++|++|+|- ++. ++++++||+++.|||+++-||||||||||||+|.|-|.|++|+|++.-. |+-...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 588999998872 332 7999999999999999999999999999999999999999999999533 222222
Q ss_pred HH---HH-hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 133 VL---SL-RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 133 ~~---~~-~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
+. +. |+.||||.|--...|. +..|.++-++.-.+.+. ..+++..++.++++++.+..-.|.++||||||||.|
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI 163 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI 163 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence 22 33 4569999997766665 77777776654444433 345688899999999878888999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
||.++.+-+||||||||++||..+++.+.++|.+.+. .|.++|=|-||-+.=+..|||++-+..
T Consensus 164 aRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999998754 599999999999988889999987754
No 366
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.2e-38 Score=282.89 Aligned_cols=195 Identities=28% Similarity=0.329 Sum_probs=139.4
Q ss_pred CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHH-HHHhcCCCCCccEEEECC-------EeC---CCCCHHHHh-cceEE
Q 022337 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLL-RALNRLWEPPSGTVFLDG-------RDI---TDLDVLSLR-RKVGM 142 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLl-k~l~gl~~p~~G~I~i~g-------~~i---~~~~~~~~~-~~ig~ 142 (298)
.+.++|+++||+|++||++||+||||||||||+ ..+. .+|++.+.+ ..+ ........+ ...++
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 345799999999999999999999999999996 4443 134432210 000 000001111 23455
Q ss_pred EeCCCCC--Ccc-cHH---HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC--C
Q 022337 143 LFQIPAL--FEG-TVV---DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP--E 214 (298)
Q Consensus 143 v~Q~~~l--~~~-tv~---eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p--~ 214 (298)
..|++.. .+. ++. +...+........ ...+..+.++.+++.+...++++.+||||||||++|||||+.+| +
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~ 159 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLFARV-GIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGV 159 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCC
Confidence 5555432 222 433 2222211111111 12233578999999643478999999999999999999999998 5
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEee
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVL 277 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g 277 (298)
+|||||||++||+.++..+.+.|++++++ |.|+|++|||++.+ .+||++++| ++|+|+++|
T Consensus 160 llllDEPt~gLD~~~~~~l~~~l~~~~~~-g~tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 160 LYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999999999999999999999998654 89999999999987 589999999 999999875
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=306.67 Aligned_cols=204 Identities=31% Similarity=0.417 Sum_probs=177.3
Q ss_pred CCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
...+.++++|+++.|++++.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-. -
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v 385 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------V 385 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------e
Confidence 34668999999999976578999999999999999999999999999999999999999999987421 2
Q ss_pred ceEEEeCCCC-CCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 139 KVGMLFQIPA-LFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 139 ~ig~v~Q~~~-l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
++||..|+.. +++. |+.|++.-... ...+..++..|..+++..+...+++..||||||-|+.+|+.++.+|.+|
T Consensus 386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~----~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvL 461 (530)
T COG0488 386 KIGYFDQHRDELDPDKTVLEELSEGFP----DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLL 461 (530)
T ss_pred EEEEEEehhhhcCccCcHHHHHHhhCc----cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEE
Confidence 5899999884 4454 99999975431 1125779999999999877788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe-eChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV-LKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~-g~~~~~ 282 (298)
||||||+.||..+...+.+.|.++ .-|||+||||..++.++|++++.+++ ++... |+.++.
T Consensus 462 iLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 462 LLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred EEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 999999999999999999999988 34999999999999999999999998 66544 555544
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.9e-37 Score=254.48 Aligned_cols=132 Identities=46% Similarity=0.792 Sum_probs=118.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHh
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNI 158 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni 158 (298)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....++.++|++|++.+++. |+.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999876666778899999999888875 89999
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCC----CCCChhHHHHHHHHHHHcCCCCeEEEeCcCC
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG----GEISVGQAQRVALARTLANEPEVLLLDEPTS 223 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~LSgGqkQRv~iAral~~~p~illLDEPts 223 (298)
...+++.++++.+++. ++.++.+ .+||+|||||++|||||+++|+++||||||+
T Consensus 80 ----------~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----------ESDERIEEVLKKLGLE-DLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------HHHHHHHHHHHHTTHG-GGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------cccccccccccccccc-cccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2345688888888875 3444444 9999999999999999999999999999997
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=100.00 E-value=2.6e-36 Score=264.29 Aligned_cols=164 Identities=21% Similarity=0.317 Sum_probs=136.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc---------cEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS---------GTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE 151 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~---------G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~ 151 (298)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.++|+++... ..+++++++||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6799999999 999999999999999999999987653 4677777765431 2357899999999766
Q ss_pred ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCH
Q 022337 152 GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDP 227 (298)
Q Consensus 152 ~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~ 227 (298)
|+.. ..+++.++++. . +..++.+.+||||||||++|||+++ .+|+++||||||++||+
T Consensus 89 --------~~~~------~~~~~~~~l~~---~-~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~ 150 (197)
T cd03278 89 --------YSII------SQGDVSEIIEA---P-GKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred --------eeEE------ehhhHHHHHhC---C-CccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCH
Confidence 2210 13456677777 2 3567889999999999999999997 56799999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
..+..+.+.|+++.+ +.|||++||+++.+ .+||+++.+..
T Consensus 151 ~~~~~l~~~l~~~~~--~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 151 ANVERFARLLKEFSK--ETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHhcc--CCEEEEEECCHHHH-hhcceEEEEEe
Confidence 999999999999854 68999999999987 58999998864
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.5e-35 Score=268.00 Aligned_cols=196 Identities=29% Similarity=0.401 Sum_probs=151.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh-----c-CC----CCCcc-----------EEEECCEeCCCCCH---
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN-----R-LW----EPPSG-----------TVFLDGRDITDLDV--- 133 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~-----g-l~----~p~~G-----------~I~i~g~~i~~~~~--- 133 (298)
..|+|+|++|+.|.+++|.|+||||||||++.+. . +. .|..+ -|.+|..++..-+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999662 1 11 12211 36677766643211
Q ss_pred H-------HHhc----------------ceEEEeCCCCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhc
Q 022337 134 L-------SLRR----------------KVGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN 189 (298)
Q Consensus 134 ~-------~~~~----------------~ig~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 189 (298)
. ++|+ .+.|..++...+ ..|+.|++.|..... ..++..++++.+||.....+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~----~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP----KIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh----hHHHHHHHHHHcCCchhhhc
Confidence 0 1111 134444444333 358888888754321 23567789999999632478
Q ss_pred CCCCCCChhHHHHHHHHHHHcCC---CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 190 KTGGEISVGQAQRVALARTLANE---PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral~~~---p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
+++.+|||||+||++|||+|+.+ |+++||||||+|||+..++.+.+.|+++.++ |.|+|++||+++.+. .||+++
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvIiitH~~~~i~-~aD~ii 242 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHNLDVIK-CADWII 242 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-hCCEEE
Confidence 99999999999999999999996 7999999999999999999999999998754 899999999999985 699999
Q ss_pred EE------eCCEEEEeeCh
Q 022337 267 LL------VNGEIVEVLKP 279 (298)
Q Consensus 267 vl------~~G~i~~~g~~ 279 (298)
+| ++|+|++.|++
T Consensus 243 ~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 243 DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EecCCcCCCCCEEEEeCCC
Confidence 99 89999998864
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.9e-37 Score=257.39 Aligned_cols=211 Identities=26% Similarity=0.389 Sum_probs=183.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++||+... -|-.+|.++..||++-+|||||||||||+-.++|+. |-+|+|.++|.++..++..++.++-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 57888887643 266799999999999999999999999999999997 689999999999998888888888899
Q ss_pred EeCCCC-CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC-----C--CC
Q 022337 143 LFQIPA-LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN-----E--PE 214 (298)
Q Consensus 143 v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~-----~--p~ 214 (298)
+.|+.. .|.+.|..++.+... .......+.++...++++ +.+.+..++|||||+|||-+|...++ + .+
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP---~~~~a~~i~~i~~~L~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~ 152 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQP---DKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQ 152 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCc---hHHHHHHHHHHHhhhccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccce
Confidence 988765 566799999887531 112234577889999997 46889999999999999999998875 3 47
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+||+|||.++||...+..+..+|.+++.. |.+|||++||++.-.+.||+++.++.|++...|..+++..
T Consensus 153 LLllDEP~~~LDvAQ~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt 221 (248)
T COG4138 153 LLLLDEPMNSLDVAQQSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLT 221 (248)
T ss_pred eEEecCCCcchhHHHHHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcC
Confidence 99999999999999999999999999975 9999999999999889999999999999999999888754
No 372
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.9e-35 Score=281.85 Aligned_cols=217 Identities=25% Similarity=0.393 Sum_probs=185.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRR 138 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~ 138 (298)
..+.++++|++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|.++|+++...++. ..+.
T Consensus 260 ~~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 260 GEPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred CCcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 4567899998853 158899999999999999999999999999999999999999999999998766544 5678
Q ss_pred ceEEEeCCCC---CCc-ccHHHHhHhCcc--cc-C--CCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 139 KVGMLFQIPA---LFE-GTVVDNIRYGPQ--LR-G--KKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 139 ~ig~v~Q~~~---l~~-~tv~eni~~~~~--~~-~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.|+|||.|-. ++. .+|.+|+.++.. +. . .+. ..+.+.++.+.+++...-.+..+.+||||.||||.|||
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHH
Confidence 8999998763 565 599999988721 11 1 111 22346778888888643456789999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
.|+.+|++|||||||.|.|.-++.++++++++++++ |++||++|-++.++..+||||+||++|+|+..-+.+++
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~ 488 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMREGRIVGELDREEA 488 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999876 99999999999999999999999999999987665554
No 373
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=267.31 Aligned_cols=205 Identities=31% Similarity=0.470 Sum_probs=175.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++++|+.|.|.....-+.-||++|++||++-|+|.||||||||+++|.|+++|++|+|++||+++...+++++|+-++-
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 59999999999765567889999999999999999999999999999999999999999999999998889999999999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc--hhhcC--CCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS--SFLNK--TGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~--~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||-|.++|+..+ +.. + ..+.+.+...++++.+.. .+.+. .+-.||.|||+|+++.-||+-+-+|+++
T Consensus 402 vFsDyhLF~~ll------~~e--~-~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~ 472 (546)
T COG4615 402 VFSDYHLFDQLL------GPE--G-KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL 472 (546)
T ss_pred HhhhHhhhHhhh------CCc--c-CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence 999999987532 221 1 134556777777776631 12222 2457999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
||=-+--||.-++.+++.+.-+.++.||||+.||||-..- ..|||++.+++|++++..
T Consensus 473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-IHADRLLEMRNGQLSELT 530 (546)
T ss_pred ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-hhHHHHHHHhcCceeecc
Confidence 9999999999999999998887778899999999996554 579999999999998754
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=100.00 E-value=7.7e-35 Score=257.62 Aligned_cols=192 Identities=21% Similarity=0.275 Sum_probs=141.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEe-CCcEEEEEcCCCccHHHHHHHHhc-CCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIP-KGVIMGIIGPSGSGKSTLLRALNR-LWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~-~Ge~~~iiG~nGsGKSTLlk~l~g-l~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.|+++|+. .|.+. .+++|+.. +|++++|+||||||||||+++|++ ++-+..+....+ .....+.....+..|
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEE
Confidence 48889988 55432 56777654 589999999999999999999995 544555555433 111111222335679
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHH--HHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC-------
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYK--LLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN------- 211 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~------- 211 (298)
+++||++.... ++..+ .+. +.+.+.+ .++..++. ++.++++.+||+|||||++|||||+.
T Consensus 79 ~~~f~~~~~~~-~~~r~-------~gl--~~~~~~~~~~l~~g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~ 147 (213)
T cd03279 79 SFTFQLGGKKY-RVERS-------RGL--DYDQFTRIVLLPQGEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNR 147 (213)
T ss_pred EEEEEECCeEE-EEEEe-------cCC--CHHHHHHhhhhhhcchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhc
Confidence 99999874211 11111 122 2222222 24445564 57789999999999999999999985
Q ss_pred ---CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 212 ---EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 212 ---~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+|+++||||||++||+.+++.+.+.|.+++++ +.|+|+|||+++.+..+||+++++++|.
T Consensus 148 ~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 148 GGARLEALFIDEGFGTLDPEALEAVATALELIRTE-NRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred cCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 67899999999999999999999999998654 8999999999999999999999999985
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=3e-34 Score=257.83 Aligned_cols=191 Identities=21% Similarity=0.286 Sum_probs=139.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh----------------cCCCCCcc--------
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN----------------RLWEPPSG-------- 119 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~----------------gl~~p~~G-------- 119 (298)
++++|.. +| ++..++++++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 4 i~~~nfk-sy-~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGFK-SY-KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCcc-Cc-ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 6677754 45 3567888887 8899999999999999999998 55666666
Q ss_pred EEEECCEeCC-CC--CHHHHhcceEEEeCCCCCCcc--cHHHHhHhCccccCCCc-------cHHHHHHHHHHcCCCchh
Q 022337 120 TVFLDGRDIT-DL--DVLSLRRKVGMLFQIPALFEG--TVVDNIRYGPQLRGKKL-------TENEVYKLLSLADLDSSF 187 (298)
Q Consensus 120 ~I~i~g~~i~-~~--~~~~~~~~ig~v~Q~~~l~~~--tv~eni~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~ 187 (298)
+|.+++.+-. .. ....+++.+++++|++.+++. |..|...+.... +... ...++ .+.+++. ..
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i---~~l~~l~-~~ 151 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKI---NSLTNMK-QD 151 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCch---HHhhhcc-cc
Confidence 6666653211 00 112346678999998877762 655544432211 1111 11223 3334443 34
Q ss_pred hcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 188 LNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
.++++.+||||||||++|||||+ .+|+++|+||||++||+.+++.+++.|+++.+ +.++|++||+.+ +..+||
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~d 228 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE-LLEVAD 228 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH-HHhhCC
Confidence 67789999999999999999996 36899999999999999999999999999854 789999999966 568999
Q ss_pred EEEEEe
Q 022337 264 VVCLLV 269 (298)
Q Consensus 264 ~v~vl~ 269 (298)
++++|.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 999885
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=5.6e-34 Score=258.01 Aligned_cols=177 Identities=27% Similarity=0.268 Sum_probs=139.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCE-eCCCCC-H-HHHhcceEEEeCCCC---------CCc-ccHH
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGR-DITDLD-V-LSLRRKVGMLFQIPA---------LFE-GTVV 155 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~-~i~~~~-~-~~~~~~ig~v~Q~~~---------l~~-~tv~ 155 (298)
..+++|+||||||||||+++|++++.|+ .|++++.|. ++.... . ...+.+++++||++. +.+ .||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 4599999999999999999999999887 468888776 432111 0 122457999999962 334 4888
Q ss_pred HHhHhCcccc----CCCccHHHHHHHHHHcCCCc-------------------hhhcCCCCCCChhHHHHHHHHHHHc--
Q 022337 156 DNIRYGPQLR----GKKLTENEVYKLLSLADLDS-------------------SFLNKTGGEISVGQAQRVALARTLA-- 210 (298)
Q Consensus 156 eni~~~~~~~----~~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgGqkQRv~iAral~-- 210 (298)
+++..+.... +.....+++.++++.+++.. +..++++.+||+|||||++|||||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 8887654211 12224577889999999851 3456789999999999999999998
Q ss_pred --CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 211 --NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 211 --~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
.+|+++|+||||++||+..++.+.+.|+++.+ |.|+|+|||+.+.. +.||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~--g~~ii~iSH~~~~~-~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK--GSQFIVVSLKEGMF-NNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHH-HhCCEEEEEE
Confidence 57899999999999999999999999999853 88999999996554 6799998765
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=100.00 E-value=2.6e-34 Score=254.37 Aligned_cols=182 Identities=19% Similarity=0.249 Sum_probs=140.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh-cceE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-RKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~-~~ig 141 (298)
.|+++|+. .| ++..+++++++ ++++|+||||||||||+++|. +++|.+.. ..+ ++++
T Consensus 5 ~l~l~nfk-~~-~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i~ 62 (212)
T cd03274 5 KLVLENFK-SY-AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKLS 62 (212)
T ss_pred EEEEECcc-cC-CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhHH
Confidence 37788877 67 46679999988 899999999999999999997 33554431 223 5799
Q ss_pred EEeCCCCCCcc-cHHHHhHhCcccc--------CCCccHHH----HHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLR--------GKKLTENE----VYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~--------~~~~~~~~----~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++|+..+++. ++.+++.+..... +......+ ..++++.++++ +..++++..||+|||||++||||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~-~~~~~~~~~lS~G~~~r~~la~a 141 (212)
T cd03274 63 DLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP-KKSWKNISNLSGGEKTLSSLALV 141 (212)
T ss_pred HHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc-cccccchhhcCHHHHHHHHHHHH
Confidence 99999887764 7777766543321 11111111 24556777775 46778899999999999999999
Q ss_pred HcC----CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 209 LAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 209 l~~----~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
++. +|++++|||||+|||+.++..+.+.|+++.+ +.|+|++||+. .+.++|||+++|..
T Consensus 142 l~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 142 FALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred HHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 974 5899999999999999999999999999853 67999999996 46689999999964
No 378
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.4e-33 Score=239.96 Aligned_cols=234 Identities=28% Similarity=0.452 Sum_probs=191.9
Q ss_pred CeEEEEeEEEEeC---CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHH
Q 022337 62 PKFRVRELRKESD---DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP----PSGTVFLDGRDITDLDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~---~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p----~~G~I~i~g~~i~~~~~~ 134 (298)
+.+.++|++..+. |...+++++|+++++||+-|+||+||||||-..|.|+|..+- +.-+..+++.++..+++.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 4567788886653 334799999999999999999999999999999999998763 456778888888888776
Q ss_pred HHhc----ceEEEeCCCC--CCcc-cHH----HHhHhCccccCC-----CccHHHHHHHHHHcCCCc--hhhcCCCCCCC
Q 022337 135 SLRR----KVGMLFQIPA--LFEG-TVV----DNIRYGPQLRGK-----KLTENEVYKLLSLADLDS--SFLNKTGGEIS 196 (298)
Q Consensus 135 ~~~~----~ig~v~Q~~~--l~~~-tv~----eni~~~~~~~~~-----~~~~~~~~~~l~~~~l~~--~~~~~~~~~LS 196 (298)
+.|+ .|+++||+|. |-|. +|. +||-+- .+.+. .-.+.++.+++.++|+.+ +....||.+|.
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~w-TfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAW-TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccc-cccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 6554 5889999996 4443 553 333211 11111 123567889999999964 35667999999
Q ss_pred hhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEe
Q 022337 197 VGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEV 276 (298)
Q Consensus 197 gGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~ 276 (298)
-||-|+|.||.|++++|++||.||||+++|+.++.+++.+|.++.+..|.||++++||+..+.+.||++-||.-|.-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred eChhhhhc-cCChHHHHHhhh
Q 022337 277 LKPDLLSE-AKHPMALRFLQL 296 (298)
Q Consensus 277 g~~~~~~~-~~~~~~~~~~~~ 296 (298)
++.+++.+ +.|+|...++..
T Consensus 241 a~~e~l~~~PhHPYTqALi~a 261 (330)
T COG4170 241 APSEELVTMPHHPYTQALIRA 261 (330)
T ss_pred cchhHHhcCCCCchHHHHHHh
Confidence 99888754 567787766543
No 379
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=8.6e-32 Score=265.41 Aligned_cols=192 Identities=28% Similarity=0.398 Sum_probs=165.1
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+..++++|++..-+++...+++.||+|++||.+-|.||||||||||+|+|+|+++.-+|+|.+- -...+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-----------~~~~~ 458 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-----------ADSAL 458 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-----------CCCce
Confidence 4689999999998877889999999999999999999999999999999999999999998652 01358
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCC------CCCCChhHHHHHHHHHHHcCCCC
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKT------GGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LSgGqkQRv~iAral~~~p~ 214 (298)
-|+||.|.+..+|.+|-|.|+.... ...++++.++|.++||. ++.++. -..||+|||||+++||.|+++|+
T Consensus 459 lflpQ~PY~p~GtLre~l~YP~~~~--~~~d~~l~~vL~~vgL~-~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~ 535 (604)
T COG4178 459 LFLPQRPYLPQGTLREALCYPNAAP--DFSDAELVAVLHKVGLG-DLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPK 535 (604)
T ss_pred EEecCCCCCCCccHHHHHhCCCCCC--CCChHHHHHHHHHcCcH-HHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCC
Confidence 9999999988889999999985432 24578899999999995 444332 24799999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+++|||.|++||+.++..+++++++-.. +.|||-|.|+.... .+.++.+-+.
T Consensus 536 ~v~LDEATsALDe~~e~~l~q~l~~~lp--~~tvISV~Hr~tl~-~~h~~~l~l~ 587 (604)
T COG4178 536 WVFLDEATSALDEETEDRLYQLLKEELP--DATVISVGHRPTLW-NFHSRQLELL 587 (604)
T ss_pred EEEEecchhccChHHHHHHHHHHHhhCC--CCEEEEeccchhhH-HHHhhheeec
Confidence 9999999999999999999999998654 89999999997654 6777766554
No 380
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.98 E-value=9.1e-33 Score=265.22 Aligned_cols=205 Identities=24% Similarity=0.319 Sum_probs=171.8
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..|.+.+.|++|.|.++..+++++||-|..++.+|+|||||||||||||+++|.+.|+.|.|.-.-. .+
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~ 454 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NK 454 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------cc
Confidence 4678999999999976667999999999999999999999999999999999999999999864322 23
Q ss_pred eEEEeCCCC---CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPA---LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~---l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+++.-|+.. .+..++.|++.-.. ......+.+..++.++||..+..+.+.++||+|||.||.+||.++..|.+|
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~---~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL 531 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKF---PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL 531 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhc---cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence 444455442 24458888876321 111245678899999999866778889999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
+|||||++||..+...+-+.|.++ .-++|+||||.-.+.++++++++..+|.+. ..|+....
T Consensus 532 lLDEPtnhLDi~tid~laeaiNe~----~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~y 594 (614)
T KOG0927|consen 532 LLDEPTNHLDIETIDALAEAINEF----PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIY 594 (614)
T ss_pred EecCCCcCCCchhHHHHHHHHhcc----CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHH
Confidence 999999999999999999999987 348999999999999999999999999875 45666544
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.98 E-value=3.1e-32 Score=239.71 Aligned_cols=165 Identities=23% Similarity=0.348 Sum_probs=130.3
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHh----cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCC-----CCc-c
Q 022337 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALN----RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA-----LFE-G 152 (298)
Q Consensus 83 isl~i~~Ge~~~iiG~nGsGKSTLlk~l~----gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~-----l~~-~ 152 (298)
.++++.+| +++|+||||||||||+++|. |...|+.|.+..+.+.+.. ...+..++++||++. ... .
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566777 99999999999999999994 9999988877622222221 123567999999982 233 3
Q ss_pred cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH------HHHHHHHcCCCCeEEEeCcCCCCC
Q 022337 153 TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR------VALARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 153 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR------v~iAral~~~p~illLDEPts~LD 226 (298)
|+.+|+.+.. .+++.+ ..++++.+||+||+|| ++||||++.+|+++|+||||++||
T Consensus 92 ~~~~~~~~~~--------~~~~~~----------~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD 153 (204)
T cd03240 92 AILENVIFCH--------QGESNW----------PLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLD 153 (204)
T ss_pred hHhhceeeec--------hHHHHH----------HHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccC
Confidence 8889887642 122222 2367788999999996 789999999999999999999999
Q ss_pred HHHHH-HHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 227 PISTQ-NIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 227 ~~~~~-~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+..+. .+.+.|.++.++.|.|+|++||+++.+ ..||+++.|++
T Consensus 154 ~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~-~~~d~i~~l~~ 197 (204)
T cd03240 154 EENIEESLAEIIEERKSQKNFQLIVITHDEELV-DAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH-hhCCEEEEEee
Confidence 99999 999999998764478999999999977 46999999864
No 382
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.98 E-value=3.4e-31 Score=252.88 Aligned_cols=222 Identities=25% Similarity=0.459 Sum_probs=189.2
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC-CCCCHHHHh-
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI-TDLDVLSLR- 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i-~~~~~~~~~- 137 (298)
..+.++++||+..-..+...+++|||++.+||++||.|=.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ..++..+++
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 467899999998764445789999999999999999999999999999999999999999999999997 566665554
Q ss_pred cceEEEeCCCC---CC-cccHHHHhHhCcccc------CC---CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 138 RKVGMLFQIPA---LF-EGTVVDNIRYGPQLR------GK---KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 138 ~~ig~v~Q~~~---l~-~~tv~eni~~~~~~~------~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
..++|||.|.. +. +.|+.||+.+..... +. ....+.+.++++.+++...-...+..+||||++||+-
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I 413 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI 413 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence 56999999874 44 469999999764321 11 1123457788899988522244567899999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+||-|..+|++||+.+||.|||..+.+.+.+.|.+.+++ |++|+++|-|++++..+||||.||.+|+++...++++.
T Consensus 414 laREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred hhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeeeeCCceecccccccC
Confidence 999999999999999999999999999999999998764 99999999999999999999999999999988877654
No 383
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3.9e-32 Score=282.24 Aligned_cols=201 Identities=27% Similarity=0.356 Sum_probs=171.8
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-c
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-G 152 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~ 152 (298)
.+++|+||+=-++||-.+||+|+|||||||||++|+|-..- .+|+|.++|.+..+ +..+|.+|||-|++...+ .
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 34799999999999999999999999999999999997532 47999999998643 467889999999987666 4
Q ss_pred cHHHHhHhCccccCCC-----ccHHHHHHHHHHcCCCchhhcCCCC----CCChhHHHHHHHHHHHcCCC-CeEEEeCcC
Q 022337 153 TVVDNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLNKTGG----EISVGQAQRVALARTLANEP-EVLLLDEPT 222 (298)
Q Consensus 153 tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkQRv~iAral~~~p-~illLDEPt 222 (298)
||+|-+.|.+.++... +..+.++++++.++|+ ++.+.-++ .||..||+|+.||--|+.+| .||+|||||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 9999999987665321 1225689999999996 45655544 49999999999999999999 899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEe-CCEEEEeeChhh
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLV-NGEIVEVLKPDL 281 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~-~G~i~~~g~~~~ 281 (298)
||||..+...+++.+++++.. |.||+++-|.++ .+.+..|++++|+ +|+.+..|+..+
T Consensus 959 SGLDsqaA~~i~~~lrkla~t-GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 959 SGLDSQAAAIVMRFLRKLADT-GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCccHHHHHHHHHHHHHHHhc-CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999999874 999999999996 4566689999997 579999998754
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.97 E-value=4.7e-31 Score=274.42 Aligned_cols=221 Identities=28% Similarity=0.357 Sum_probs=158.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh---------cCCCCCcc------------E
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN---------RLWEPPSG------------T 120 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~---------gl~~p~~G------------~ 120 (298)
+.++++|++. ..|+|+||+|++||+++|.|+||||||||++-+. +...+..+ -
T Consensus 613 ~~L~v~~l~~------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 613 KFLKLKGARE------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred ceEEecCCcc------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 4688888862 2599999999999999999999999999999764 21111222 2
Q ss_pred EEECCEeCCCCC-------------HHHHh------cceEEEeCCCCCC-------------------------------
Q 022337 121 VFLDGRDITDLD-------------VLSLR------RKVGMLFQIPALF------------------------------- 150 (298)
Q Consensus 121 I~i~g~~i~~~~-------------~~~~~------~~ig~v~Q~~~l~------------------------------- 150 (298)
|.++-.++..-+ ...+. +..||.++.+.+.
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 333333322100 01111 1233333332221
Q ss_pred ------------------------cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 151 ------------------------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 151 ------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
..|+.|++.|..... ...+..+.++.+||.....++++.+|||||+||+.||
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~----~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LA 842 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIP----KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLA 842 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhch----hhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHH
Confidence 135555555532211 1123456788899963246889999999999999999
Q ss_pred HHHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEee
Q 022337 207 RTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVL 277 (298)
Q Consensus 207 ral~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g 277 (298)
|+|+.+| +++||||||+|||+..++.+++.|+++.++ |.|||+|||+++.+. .||+|++| ++|++++.|
T Consensus 843 raL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~-G~TVIiitH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~G 920 (943)
T PRK00349 843 KELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK-GNTVVVIEHNLDVIK-TADWIIDLGPEGGDGGGEIVATG 920 (943)
T ss_pred HHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEEEecCCcCCCCCEEEEeC
Confidence 9999999 999999999999999999999999999754 899999999999985 79999999 799999999
Q ss_pred ChhhhhccCChHHHHHh
Q 022337 278 KPDLLSEAKHPMALRFL 294 (298)
Q Consensus 278 ~~~~~~~~~~~~~~~~~ 294 (298)
+++++......++..|+
T Consensus 921 t~~el~~~~~s~t~~~l 937 (943)
T PRK00349 921 TPEEVAKVEASYTGRYL 937 (943)
T ss_pred CHHHHHhCcccHHHHHH
Confidence 99998764444444443
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.97 E-value=9e-31 Score=283.00 Aligned_cols=213 Identities=24% Similarity=0.347 Sum_probs=159.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHH---------HHhcCCCCCcc----E----EEEC
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLR---------ALNRLWEPPSG----T----VFLD 124 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk---------~l~gl~~p~~G----~----I~i~ 124 (298)
+.++++|++. ..|+++||+|++||+++|.|+||||||||++ .|.|...+..+ . |.+|
T Consensus 599 ~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 599 GTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred CeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 3688888762 3699999999999999999999999999999 66665433111 1 3444
Q ss_pred CEeCCCCCH----H------HHh---------c-----ceEEEeCC------------------C---------------
Q 022337 125 GRDITDLDV----L------SLR---------R-----KVGMLFQI------------------P--------------- 147 (298)
Q Consensus 125 g~~i~~~~~----~------~~~---------~-----~ig~v~Q~------------------~--------------- 147 (298)
-.++...+. . ++| + ...|.|+. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 433322100 0 122 1 12233442 0
Q ss_pred -----CCCc-ccHHHHhHhCcccc---CC--CccHHHHHHHHHHcCCCchh-hcCCCCCCChhHHHHHHHHHHHc---CC
Q 022337 148 -----ALFE-GTVVDNIRYGPQLR---GK--KLTENEVYKLLSLADLDSSF-LNKTGGEISVGQAQRVALARTLA---NE 212 (298)
Q Consensus 148 -----~l~~-~tv~eni~~~~~~~---~~--~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkQRv~iAral~---~~ 212 (298)
..|. .||.|++.++..-. .. ....+++ ++++.+|+. ++ .++++.+|||||+||++|||||+ .+
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~-~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~ 830 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLD-YLPLGRPLSSLSGGEIQRLKLAYELLAPSKK 830 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCc-chhhcCccccCCHHHHHHHHHHHHHhhcCCC
Confidence 1244 38999998874311 11 1112334 578899996 45 68999999999999999999997 69
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe------CCEEEEeeChhhhhc
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSE 284 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~------~G~i~~~g~~~~~~~ 284 (298)
|++|||||||+|||+..++.++++|.+++++ |.|||+|||+++.+ .+||++++|. +|++++.|+++++..
T Consensus 831 P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 831 PTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ-GHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999764 99999999999998 7999999996 799999999998754
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.97 E-value=2.7e-30 Score=233.53 Aligned_cols=196 Identities=19% Similarity=0.179 Sum_probs=134.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe-C-CC-----CCHHHH
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD-I-TD-----LDVLSL 136 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~-i-~~-----~~~~~~ 136 (298)
++++|+ +.|. +.. +|.+.++ +++|+||||||||||+.+|++++.++.|++...+.+ + .. .+....
T Consensus 4 i~l~nf-~~~~-~~~-----~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~ 75 (247)
T cd03275 4 LELENF-KSYK-GRH-----VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSA 75 (247)
T ss_pred EEEECc-cccC-CCe-----eecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceE
Confidence 677886 4563 222 2333344 999999999999999999999998888887654421 1 11 011111
Q ss_pred hcceEEEeCCCCC--CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc-------------hhh--------cCCCC
Q 022337 137 RRKVGMLFQIPAL--FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS-------------SFL--------NKTGG 193 (298)
Q Consensus 137 ~~~ig~v~Q~~~l--~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------~~~--------~~~~~ 193 (298)
.-.+.|..|++.. +..++.+.... ....+.....+.+.++++.+|+.. .+. ++++.
T Consensus 76 ~v~~~f~~~~~~~~~~~~~~~~~~~~-~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~ 154 (247)
T cd03275 76 YVTAVYEDDDGEEKTFRRIITGGSSS-YRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD 154 (247)
T ss_pred EEEEEEEcCCCcEEEEEEEEECCceE-EEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence 1224444444331 22233222111 011122234556778888888841 112 23348
Q ss_pred CCChhHHHHHHHHHHHcCC----CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 194 EISVGQAQRVALARTLANE----PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~~----p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+||+|||||++||||++.+ |+++||||||++||+..+..+.+.|.+++++ |.++|+|||+.+.+ .+||++++|.
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~-g~~vi~isH~~~~~-~~~d~i~~~~ 232 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGP-NFQFIVISLKEEFF-SKADALVGVY 232 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccC-CcEEEEEECCHHHH-hhCCeEEEEE
Confidence 9999999999999999864 8999999999999999999999999998754 89999999998766 6899998886
Q ss_pred C
Q 022337 270 N 270 (298)
Q Consensus 270 ~ 270 (298)
.
T Consensus 233 ~ 233 (247)
T cd03275 233 R 233 (247)
T ss_pred e
Confidence 4
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.96 E-value=8.2e-30 Score=223.36 Aligned_cols=174 Identities=22% Similarity=0.203 Sum_probs=128.8
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC-CHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL-DVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~-~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
++++++++.+| +.+|+||||||||||+..|...+..... ....|..+..+ ........|.+.||+..+++ |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 46788888888 8899999999999999999854433221 11112211100 00011345889999877665 1
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH----cCCCCeEEEeCcCCCCCHHHHHHHH
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL----ANEPEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral----~~~p~illLDEPts~LD~~~~~~~~ 234 (298)
.. .....+++.++++. . +..++++.+||+|||||++||+|+ +.+|+++||||||++||+..+..+.
T Consensus 84 ----~~--~~~~~~~~~~~l~~---~-~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~ 153 (198)
T cd03276 84 ----PL--CVLSQDMARSFLTS---N-KAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST 153 (198)
T ss_pred ----cC--CHHHHHHHHHHhcc---c-cccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence 00 11123556677766 3 356889999999999999999999 6999999999999999999999999
Q ss_pred HHHHHHHhc--CCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 235 DVLVKLKKK--HGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 235 ~~l~~l~~~--~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+.|.++.++ .+.|||++||+++.+..+ |+|.+|..++
T Consensus 154 ~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 154 DLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 999998653 246899999999999875 9999998764
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=1e-29 Score=244.25 Aligned_cols=215 Identities=27% Similarity=0.334 Sum_probs=155.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC--CEeCCCCCHHHHhcce
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD--GRDITDLDVLSLRRKV 140 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~--g~~i~~~~~~~~~~~i 140 (298)
.++++|+++.|. +..+++|+.|++.+|+.+||+|+|||||||+|++|.|-..|..-++-+. .+++..-....+..-+
T Consensus 75 dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~ 153 (614)
T KOG0927|consen 75 DVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVV 153 (614)
T ss_pred cceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHh
Confidence 599999999995 6789999999999999999999999999999999999998866554332 2222110000000000
Q ss_pred EEEeCCCCCCcccHHHHhHhC---------------ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 141 GMLFQIPALFEGTVVDNIRYG---------------PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~---------------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
-..+++..-+. --.|.+.-. ..-...+..+.++.+++.-+|...++.++...+||||||.|++|
T Consensus 154 ~~~~~e~~rle-~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aL 232 (614)
T KOG0927|consen 154 METDHERKRLE-YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAAL 232 (614)
T ss_pred hhhHHHHHHHH-HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHH
Confidence 01111000000 000111100 00000011234566677777776678889999999999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE-EEEeeChhhh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE-IVEVLKPDLL 282 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~-i~~~g~~~~~ 282 (298)
||||..+|++|||||||++||+.+..-+-+.|.++.. + ++++++|+-+.+-.+|++|+.+++++ +.+.|+.+.+
T Consensus 233 Ar~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 233 ARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--I-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--c-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence 9999999999999999999999999999999988732 2 89999999999999999999999999 5677877665
No 389
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.7e-29 Score=240.19 Aligned_cols=198 Identities=27% Similarity=0.379 Sum_probs=170.9
Q ss_pred CCCCeEEEEeEEEEeCCCC-cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q 022337 59 IQKPKFRVRELRKESDDGA-PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR 137 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~-~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~ 137 (298)
...|.+++.+|+|.|..+. +.+.+++++++.-+.++++|+||+||||++|++.|-..|.+|.+.+.+ |
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r 426 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------R 426 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------c
Confidence 3467899999999998776 799999999999999999999999999999999999999999886643 4
Q ss_pred cceEEEeCCCC-CCcccH--HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPA-LFEGTV--VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~-l~~~tv--~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
.+|+|.+|... .++.+| .|..+ ..+.|. .+++++..+..+|++.++..+....||||||-||++|.+..++|.
T Consensus 427 ~ri~~f~Qhhvd~l~~~v~~vd~~~--~~~pG~--~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 427 LRIKYFAQHHVDFLDKNVNAVDFME--KSFPGK--TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred ceecchhHhhhhHHHHHhHHHHHHH--HhCCCC--CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence 67999999663 334333 33332 112232 568899999999999888888889999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
+|+|||||+.||..+-..+.+.|+.+. -.|||||||.+++...|+.+|+.++|++..
T Consensus 503 lLVLDEPTNhLD~dsl~AL~~Al~~F~----GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 503 LLVLDEPTNHLDRDSLGALAKALKNFN----GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EEEecCCCccccHHHHHHHHHHHHhcC----CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999883 369999999999999999999999999975
No 390
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=7.1e-29 Score=257.76 Aligned_cols=108 Identities=30% Similarity=0.420 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC---CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 022337 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN---EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249 (298)
Q Consensus 173 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~---~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii 249 (298)
+..++++.+||.....++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..+++.|.++.++ |.|||
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~-G~TVI 885 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ-GNTVV 885 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEE
Confidence 345678888996324688999999999999999999997 59999999999999999999999999999754 89999
Q ss_pred EEccCHHHHHhhcCEEEEE------eCCEEEEeeChhhh
Q 022337 250 MVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLL 282 (298)
Q Consensus 250 ~itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~ 282 (298)
++||+++.+. .||++++| ++|++++.|+++++
T Consensus 886 vi~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 886 VIEHNLDVIK-TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEeCCHHHHH-hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999885 69999999 79999999998764
No 391
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.96 E-value=5.9e-29 Score=235.08 Aligned_cols=188 Identities=28% Similarity=0.390 Sum_probs=151.3
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++-.++.+.|+ ...|+-=+=+|..||+++++||||-||||++|+|+|.++|++|. ..+ -+++|
T Consensus 342 lv~y~~~~k~~g--~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 342 LVEYPDLKKTYG--DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred eeecchheeecC--ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 455556666663 22333333456778999999999999999999999999999997 212 24788
Q ss_pred EeCCCC-CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPA-LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
=||--. -|++||.+.+.-..... ..+.-...++++-++|+ .+.+++..+|||||.|||+||.||.++++++|||||
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~--~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEP 482 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSA--FGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQRVAIAAALSREADLYLLDEP 482 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhh--cccchhHHhhcCccchH-HHHhcccccCCchhHHHHHHHHHhccccCEEEecCc
Confidence 888542 26679999887543210 01112245678888996 689999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+|.||.+.+-.+-..|+++....++|.++|.||+-.+..++||++|.+
T Consensus 483 SA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 483 SAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred hhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999999998889999999999999999999999985
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.96 E-value=7.2e-28 Score=233.06 Aligned_cols=197 Identities=25% Similarity=0.414 Sum_probs=163.4
Q ss_pred CCCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 60 QKPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
.+..|++++|+..-+. +..+.+|+||+|++|+.+.|.||||||||+|+|.++||++-.+|++.--.+. . -+
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~----~----~~ 501 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG----G----PK 501 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC----C----CC
Confidence 4468999999998876 4567788999999999999999999999999999999999999999753321 1 14
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccc---cCCCccHHHHHHHHHHcCCCchhhcCC-----------CCCCChhHHHHHH
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQL---RGKKLTENEVYKLLSLADLDSSFLNKT-----------GGEISVGQAQRVA 204 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~~LSgGqkQRv~ 204 (298)
.+-|+||.|.+-.+|.+|.+.|+..- .....+++++.+.|+.+++. ++..+- ...||+|||||++
T Consensus 502 ~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~-hl~~r~ggld~~~~~dW~dvLS~GEqQRLa 580 (659)
T KOG0060|consen 502 DLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLG-HLLEREGGLDQQVDWDWMDVLSPGEQQRLA 580 (659)
T ss_pred ceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhh-hHHHHhCCCCchhhccHHhhcCHHHHHHHH
Confidence 58999999987668999999998431 11234567788888877774 333322 3479999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+||.++++|++-+|||-||++|...+..+.+.+++. |.|.|-|+|+-+.. ++-|.++-|+.
T Consensus 581 ~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~----giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 581 FARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM----GITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred HHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc----CCeEEEeccHHHHH-hhhhEEEEecC
Confidence 999999999999999999999999999999888764 89999999998865 67899999975
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-29 Score=241.67 Aligned_cols=202 Identities=26% Similarity=0.337 Sum_probs=152.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..|.+.+++..|+ ++.+|++-++++..|-.+||+|+||+|||||||+|+. |+|.....+ .+.+-.--
T Consensus 79 ~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~~t 145 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGDDT 145 (582)
T ss_pred cceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheeccch
Confidence 3588999999994 7889999999999999999999999999999999998 555433211 11111101
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHH-HHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYK-LLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
...|+ .+-.. .+.+.+.-...+.. ....+++.. +|.-+|+.+++..++..+||||.|-|++|||||..+|+|||||
T Consensus 146 ~~~~~-~l~~D~~~~dfl~~e~~l~~-~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD 223 (582)
T KOG0062|consen 146 EALQS-VLESDTERLDFLAEEKELLA-GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD 223 (582)
T ss_pred HHHhh-hhhccHHHHHHHHhhhhhhc-cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec
Confidence 11111 11222 33333332211110 112344444 8899999888888999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLL 282 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 282 (298)
|||+.||..+..-+-+.|..+ +.|+|+||||-+++-..|..|+.+++-++- +.|+.+++
T Consensus 224 EPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 224 EPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred CCcccchhHHHHHHHHHHhhC----CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999876 479999999999999999999999887763 45666655
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.3e-28 Score=230.10 Aligned_cols=203 Identities=28% Similarity=0.335 Sum_probs=165.6
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
.+|.+-+.+|+|.|++.++.+++++|-|.--..+|||||||.||||||++|.|-+.|+.|+.+=+ .|-+
T Consensus 583 ~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~ 651 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLR 651 (807)
T ss_pred CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceee
Confidence 46789999999999888899999999999999999999999999999999999999999987422 2456
Q ss_pred eEEEeCCCC--CC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPA--LF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
||+..|..+ |- ..|..|.+.-... ...++++..|-.+||..+--.-.+..||||||-||++|-.-+..|+||
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~FN-----lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl 726 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKFN-----LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL 726 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhcC-----CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE
Confidence 999999764 32 2377787753322 234678889999999744334467899999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE-eeChhhh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE-VLKPDLL 282 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~-~g~~~~~ 282 (298)
||||||++||..+...+-+.|.++. -.|||||||-..+.+.-=..||+++-.|-+ +|+-++.
T Consensus 727 ILDEPTNNLDIESIDALaEAIney~----GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 727 ILDEPTNNLDIESIDALAEAINEYN----GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred EecCCCCCcchhhHHHHHHHHHhcc----CcEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 9999999999999999999999883 379999999888776544678887765533 3444443
No 395
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.95 E-value=1.7e-27 Score=205.51 Aligned_cols=210 Identities=26% Similarity=0.371 Sum_probs=167.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC-CCH------
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD-LDV------ 133 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~-~~~------ 133 (298)
+..|++.++.|+|....+++-|+|++++.|....++|.||||||||||+|+|---.-.|.|.+.|++.-. -+.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 4469999999999877799999999999999999999999999999999999877777999999986422 111
Q ss_pred ----HHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 134 ----LSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 134 ----~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
.++.+..++--.-|.--+.++.+ +.|+.. +. +.++-+++++.++++ ..-+.+.+|-|||+||.|++.|
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~-mifgV~--g~--dp~Rre~LI~iLDId---l~WRmHkvSDGqrRRVQicMGL 162 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEH-MIFGVG--GD--DPERREKLIDILDID---LRWRMHKVSDGQRRRVQICMGL 162 (291)
T ss_pred eEecccccccccccccccccccccHHH-HHhhcc--CC--ChhHhhhhhhheecc---ceEEEeeccccchhhhHHHHhc
Confidence 11222222222111111224444 444432 11 235666778888885 2346788999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
++.=++|||||-|--||..++..+++.+++-++++|.||++.||-.+-++.+.++++.|++|+++...+
T Consensus 163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999987433
No 396
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.93 E-value=5e-26 Score=218.19 Aligned_cols=189 Identities=24% Similarity=0.393 Sum_probs=153.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
-|.++|+-.--+.+..++..++|.|++|-.+.|+||||||||+|+|+|.|+++...|...+ +. +.++-|
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--------P~---~~~mFY 549 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--------PR---PNNIFY 549 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec--------CC---CcceEe
Confidence 3888898877777777899999999999999999999999999999999999987776543 11 245999
Q ss_pred EeCCCCCCcccHHHHhHhCcc---ccCCCccHHHHHHHHHHcCCCchhhcCCC---------CCCChhHHHHHHHHHHHc
Q 022337 143 LFQIPALFEGTVVDNIRYGPQ---LRGKKLTENEVYKLLSLADLDSSFLNKTG---------GEISVGQAQRVALARTLA 210 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~LSgGqkQRv~iAral~ 210 (298)
+||.|..--+|.+|.|.|+-. ++.....+++...+|+.+.|+ +++.+.+ ..||||||||+++||.+.
T Consensus 550 IPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y 628 (728)
T KOG0064|consen 550 IPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLE-HILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY 628 (728)
T ss_pred ccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHH-HHHHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence 999998665699999988743 122223456677778877774 4444433 379999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
++|+.-+|||-||+..+.-+..+++..++. |.+.|-|||++... ++-..++-.
T Consensus 629 HrPkyalLDEcTsAvsidvE~~i~~~ak~~----gi~llsithrpslw-k~h~~ll~~ 681 (728)
T KOG0064|consen 629 HRPKYALLDECTSAVSIDVEGKIFQAAKDA----GISLLSITHRPSLW-KYHTHLLEF 681 (728)
T ss_pred cCcchhhhhhhhcccccchHHHHHHHHHhc----CceEEEeecCccHH-HHHHHHHhc
Confidence 999999999999999999999998887654 99999999999876 566666555
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=7.4e-26 Score=200.51 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=112.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH------hcceEEEeCCC------
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL------RRKVGMLFQIP------ 147 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~------~~~ig~v~Q~~------ 147 (298)
++++.+++.+| +.+|+||||||||||+..|.-.+-...... .... ...++ ...|-..++..
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~-----~~~~~i~~g~~~~~v~~~~~~~~~~~~~ 86 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAK-----KVGEFVKRGCDEGTIEIELYGNPGNIQV 86 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-cccc-----CHHHHhhCCCCcEEEEEEEEeCCCcccc
Confidence 35667777776 778999999999999999877663222110 0000 00111 01122222221
Q ss_pred ---CC--CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH----cCCCCeEEE
Q 022337 148 ---AL--FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL----ANEPEVLLL 218 (298)
Q Consensus 148 ---~l--~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral----~~~p~illL 218 (298)
.. .+.++.+-..+. -.+.+..+.-...+.+..+.+||+|||||+.+|+++ +.+|+++|+
T Consensus 87 ~n~~~~~~q~~~~~~~~~~------------~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llll 154 (213)
T cd03277 87 DNLCQFLPQDRVGEFAKLS------------PIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVV 154 (213)
T ss_pred CCceEEEchHHHHHHHhCC------------hHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 10 011222211110 112222232212245667899999999999877554 589999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCC-cEEEEEccCHHHHHhhcC--EEEEEeCCE
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHG-MTIVMVSHSIKQIQRIAD--VVCLLVNGE 272 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g-~tii~itHd~~~~~~~~d--~v~vl~~G~ 272 (298)
||||++||+.++..+++.|.++.++.| .|+|++||++..+..+|| +|++|++|+
T Consensus 155 DEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 155 DEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999999999999875424 589999999988888887 688999886
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.93 E-value=9.7e-26 Score=197.60 Aligned_cols=147 Identities=16% Similarity=0.202 Sum_probs=111.3
Q ss_pred ceeeeeEEEeCCc-EEEEEcCCCccHHHHHHHHh--------cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCC
Q 022337 79 ILKGVNMEIPKGV-IMGIIGPSGSGKSTLLRALN--------RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPAL 149 (298)
Q Consensus 79 vL~~isl~i~~Ge-~~~iiG~nGsGKSTLlk~l~--------gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l 149 (298)
.+-++||++.+|+ +++|.||||||||||+|+|+ |.+-|.... ..++|+.|..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~-----------------~~~~~~~~~~-- 76 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG-----------------SSLPVFENIF-- 76 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc-----------------ccCcCccEEE--
Confidence 3557999999995 79999999999999999998 433332100 0122222211
Q ss_pred CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHH
Q 022337 150 FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229 (298)
Q Consensus 150 ~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~ 229 (298)
..++.. +..++..+++|+||||++.+++++ .+|+++++|||++|+|+..
T Consensus 77 -----------------------------~~lg~~-~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~ 125 (200)
T cd03280 77 -----------------------------ADIGDE-QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVE 125 (200)
T ss_pred -----------------------------EecCch-hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHH
Confidence 111222 224455678999999999999885 8999999999999999999
Q ss_pred HHHHHH-HHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 230 TQNIED-VLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 230 ~~~~~~-~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+..+.. .++++.+ .|.++|++||+.+ +..+||++++|++|++..++
T Consensus 126 ~~~i~~~~l~~l~~-~~~~vi~~tH~~~-l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 126 GAALAIAILEELLE-RGALVIATTHYGE-LKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEECCHHH-HHHHHhcCCCeEEEEEEEec
Confidence 999964 6777754 4899999999955 56889999999999998764
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.93 E-value=5.8e-26 Score=214.89 Aligned_cols=188 Identities=26% Similarity=0.367 Sum_probs=141.9
Q ss_pred EEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-------HHH------
Q 022337 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-------VLS------ 135 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-------~~~------ 135 (298)
+..+|+.+-..|..+-. ..+|.++||+||||-||||-+|+|+|-+.|.=|+- ++. .+|. ..+
T Consensus 80 ~vHRYg~NgFkL~~LP~-pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~p--p~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 80 VVHRYGVNGFKLYRLPT-PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDP--PSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred ceeeccCCceEEecCCC-CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCC--CCHHHHHHHhhhhHHHHHHH
Confidence 44677544344444432 57899999999999999999999999999987764 221 1111 000
Q ss_pred -Hh-c--ceEEEeCC----CCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 136 -LR-R--KVGMLFQI----PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 136 -~~-~--~ig~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
+. . ++..=+|- |..+.++|.|-+.-. ......+++.++++|. ...++.+++|||||.||+|||.
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~-------de~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa 226 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV-------DERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAA 226 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHhh-------hhcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHH
Confidence 10 0 12222332 223345666655321 1123477889999996 6899999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
|++++++++++|||+|-||...+-..-+.++++++. +++||+|.||+..+.-++|-|.++..
T Consensus 227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999999999999999999999875 89999999999999999999988864
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.5e-23 Score=192.63 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=69.5
Q ss_pred CCChhHHHHHHHHHHHcC----CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 194 EISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~----~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
.|||||+||+++|++++. +|+++++||||++||+..+..+.+.|+++.+ +.|+|++||+++.. .+||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~~-~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQVA-AMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHHH-HhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999864 78999999999865 6899999999
Q ss_pred CCEE
Q 022337 270 NGEI 273 (298)
Q Consensus 270 ~G~i 273 (298)
+|..
T Consensus 247 ~~~~ 250 (276)
T cd03241 247 KEVE 250 (276)
T ss_pred EecC
Confidence 8743
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.91 E-value=1.9e-23 Score=180.24 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=68.6
Q ss_pred CChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 195 ISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 195 LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
||+|||||++|||+++ .+|+++++|||+++||+..+..+.+.|.++.++ |.|+|++||+++.+. .||+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKEMFE-NADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999998754 799999999998774 7999999875
No 402
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.90 E-value=2.3e-23 Score=195.53 Aligned_cols=180 Identities=28% Similarity=0.483 Sum_probs=147.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--------CCCCccEEEECCEeCCCCCHHHHhcceEEEeCC--C
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--------WEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI--P 147 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--------~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~--~ 147 (298)
.+|+|+||+|++|++++|+|+|||||||++++|+|. |+|++|.|.+--..+ -+++|-+ |
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCccccc
Confidence 489999999999999999999999999999999995 689999997632221 1334432 2
Q ss_pred CCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch-hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCC
Q 022337 148 ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS-FLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 148 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD 226 (298)
.+-..|+.|.+.-- ..+-..+.++++++|+.+. +..++.++||-|||.|+.||++++.+|.+++.||-.|.||
T Consensus 466 ~f~~~tilehl~s~------tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD 539 (593)
T COG2401 466 EFGEVTILEHLRSK------TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539 (593)
T ss_pred ccCchhHHHHHhhc------cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcC
Confidence 22223777776422 1233456789999999743 3456788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEE
Q 022337 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIV 274 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~ 274 (298)
+.+...+..-|.+++++.|.|++++||+.+....+ -|+++.+.-|+..
T Consensus 540 ~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 540 ELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999999999999988899999999999999888 5999888877654
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=1.1e-23 Score=219.54 Aligned_cols=203 Identities=26% Similarity=0.355 Sum_probs=171.7
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC---CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-c
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP---PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-G 152 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p---~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~ 152 (298)
..+|+|+|.-+++|+.+.++||.|||||||+|.++|-.+- ..|+|.+||.+.++... ++.++|.+|+...++ .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 3699999999999999999999999999999999998754 25799999999876543 677999999998887 5
Q ss_pred cHHHHhHhCccccCC-----Ccc-HH----HHHHHHHHcCCCch----hhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 153 TVVDNIRYGPQLRGK-----KLT-EN----EVYKLLSLADLDSS----FLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 153 tv~eni~~~~~~~~~-----~~~-~~----~~~~~l~~~~l~~~----~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||+|-+.|..+..+. ..+ ++ ..+.+++.+||+.. .-|...+-.|||||+||.+|-+++.+|+++.+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 999999998654332 111 22 24578999999621 22344668999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH-HHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK-QIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~-~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||+|.|||..+.-++.+.|+++++..+.|.+++-|... ++..+.|.|++|.+|+++..|+.++.
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~ 349 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEV 349 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHH
Confidence 99999999999999999999999888889888888764 67788999999999999999998765
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.90 E-value=1.3e-23 Score=187.18 Aligned_cols=154 Identities=22% Similarity=0.204 Sum_probs=116.7
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE-EEeCCCCCCcccH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG-MLFQIPALFEGTV 154 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig-~v~Q~~~l~~~tv 154 (298)
.+.+.+|+++++++|++++|.||||+|||||+++++- ..+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe---
Confidence 4578999999999999999999999999999999991 12233445 5555432111
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH--cCCCCeEEEeCc---CCCCCHHH
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL--ANEPEVLLLDEP---TSALDPIS 229 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral--~~~p~illLDEP---ts~LD~~~ 229 (298)
.+++++..+++++. ....+|.|++|++.+++++ +.+|+++||||| |+++|+.+
T Consensus 72 ------------------~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~ 129 (222)
T cd03285 72 ------------------IVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG 129 (222)
T ss_pred ------------------ccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH
Confidence 02234455666432 2467999999999999999 899999999999 99999988
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
.... .++.+.++.|.++|++||+ .++.++||++..+++|++....+
T Consensus 130 ~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 130 LAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEEe
Confidence 7543 3344443347899999996 66778999999999999977654
No 405
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.89 E-value=1.3e-23 Score=184.22 Aligned_cols=145 Identities=21% Similarity=0.224 Sum_probs=105.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~ 155 (298)
+.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|...+|+ .|+.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a---------~~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA---------SSFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec---------CccCcccceEEEeccch
Confidence 45788887765 79999999999999999999988553 2235655432 136677556676 4999
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
||+.++.... ....+++.++++.+++ .+|+++|+||||+|+|+..+..+..
T Consensus 78 d~l~~~~s~~--~~e~~~~~~iL~~~~~---------------------------~~p~llllDEp~~glD~~~~~~l~~ 128 (199)
T cd03283 78 DDLRDGISYF--YAELRRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGTNSRERQAASA 128 (199)
T ss_pred hccccccChH--HHHHHHHHHHHHhccC---------------------------CCCeEEEEecccCCCCHHHHHHHHH
Confidence 9998875321 1112345556655541 7999999999999999999987754
Q ss_pred -HHHHHHhcCCcEEEEEccCHHHHHhh--cCEEEE
Q 022337 236 -VLVKLKKKHGMTIVMVSHSIKQIQRI--ADVVCL 267 (298)
Q Consensus 236 -~l~~l~~~~g~tii~itHd~~~~~~~--~d~v~v 267 (298)
.+.++.+ .|.|+|++||+++.+... .++|-.
T Consensus 129 ~ll~~l~~-~~~tiiivTH~~~~~~~~~~~~~v~~ 162 (199)
T cd03283 129 AVLKFLKN-KNTIGIISTHDLELADLLDLDSAVRN 162 (199)
T ss_pred HHHHHHHH-CCCEEEEEcCcHHHHHhhhcCCCeEE
Confidence 6777765 489999999999988765 344444
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.89 E-value=5.1e-23 Score=174.67 Aligned_cols=138 Identities=25% Similarity=0.351 Sum_probs=102.9
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE-EeCCCCCCcccHHHHhHh
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM-LFQIPALFEGTVVDNIRY 160 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~-v~Q~~~l~~~tv~eni~~ 160 (298)
..++.+.++.++.|+|||||||||+++.+....-..+|.+.... +. +.|+ +++....+
T Consensus 13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~---------- 71 (162)
T cd03227 13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL---------- 71 (162)
T ss_pred ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE----------
Confidence 34455556679999999999999999998877665555443310 00 0110 11110000
Q ss_pred CccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC----CCCeEEEeCcCCCCCHHHHHHHHHH
Q 022337 161 GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDV 236 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~----~p~illLDEPts~LD~~~~~~~~~~ 236 (298)
+. ...+||+||+||+++||+|.. +|+++|+|||++|+|+..+..+.+.
T Consensus 72 ----------------------i~------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~ 123 (162)
T cd03227 72 ----------------------IF------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEA 123 (162)
T ss_pred ----------------------eh------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 10 001299999999999999986 7899999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 237 LVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 237 l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+.++.++ +.++|++||+.+.+. .+|+++.|+.
T Consensus 124 l~~~~~~-~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 124 ILEHLVK-GAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred HHHHHhc-CCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 9998766 889999999999875 6899999864
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.89 E-value=6.6e-22 Score=214.71 Aligned_cols=120 Identities=20% Similarity=0.264 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC---CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 022337 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE---PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249 (298)
Q Consensus 173 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~---p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii 249 (298)
+..+.|+.+||..-.+.++..+|||||.||+-||.-|..+ +.+++|||||.||++...+.+++.|.++.+. |.|||
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~-g~tvi 1756 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSL-GHSVI 1756 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCeEE
Confidence 3456677888864346788999999999999999999876 7899999999999999999999999999864 99999
Q ss_pred EEccCHHHHHhhcCEEEEEe------CCEEEEeeChhhhhccCChHHHHHh
Q 022337 250 MVSHSIKQIQRIADVVCLLV------NGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 250 ~itHd~~~~~~~~d~v~vl~------~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
+|.||++.+.. ||.|+-|- .|+|++.|+|+++....++++-.|+
T Consensus 1757 vieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~~~l 1806 (1809)
T PRK00635 1757 YIDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKTYM 1806 (1809)
T ss_pred EEeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHHHHh
Confidence 99999999865 99999884 4899999999999876556655544
No 408
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.2e-23 Score=198.49 Aligned_cols=212 Identities=22% Similarity=0.322 Sum_probs=159.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCH-------
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDV------- 133 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~------- 133 (298)
.|+++|++.+-. ++..+.+.|+.|-.|..+++|||||-|||||||.|+.- --|..=.|.+..+.+..-+.
T Consensus 264 DIKiEnF~ISA~-Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 264 DIKIENFDISAQ-GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred cceeeeeeeecc-cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHH
Confidence 489999998874 67899999999999999999999999999999999863 33444456666665532110
Q ss_pred HHHhcceEEEeCCCC----CCc--ccHHHHhHhC---ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHH
Q 022337 134 LSLRRKVGMLFQIPA----LFE--GTVVDNIRYG---PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVA 204 (298)
Q Consensus 134 ~~~~~~ig~v~Q~~~----l~~--~tv~eni~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~ 204 (298)
+.-.++..++-.+.. +-. .|+.|.+.-- ++..+....+.+++.+|.-+|++.++.+++...+|||.|-||+
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 000112222211111 111 2555444311 1111223346778899999999888888889999999999999
Q ss_pred HHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE-eeCh
Q 022337 205 LARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE-VLKP 279 (298)
Q Consensus 205 iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~-~g~~ 279 (298)
+||||..+|-+|+|||||+.||..+...+-++|.-+ .+|.++||||-.++...|+.|+.|++-++.. .|..
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 999999999999999999999999999999999888 3699999999999999999999999988753 3443
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.3e-21 Score=192.98 Aligned_cols=120 Identities=30% Similarity=0.431 Sum_probs=101.9
Q ss_pred HHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 022337 174 VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250 (298)
Q Consensus 174 ~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~ 250 (298)
..+.|..+||.--.+.++..+|||||.|||-||.-|.++. -++||||||+||-..-.+.+++.|.++..+ |.|||+
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~-GnTViV 880 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVIV 880 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 3345566677533467888999999999999999999888 899999999999999999999999999875 999999
Q ss_pred EccCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhccCChHHHHHhh
Q 022337 251 VSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFLQ 295 (298)
Q Consensus 251 itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~~~~~~~~~~~ 295 (298)
|.|+++.+. .||.|+-| ..|+|++.|+|+++.+....+.-.|+.
T Consensus 881 IEHNLdVIk-~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yLk 930 (935)
T COG0178 881 IEHNLDVIK-TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYLK 930 (935)
T ss_pred EecccceEe-ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHHH
Confidence 999999885 69999987 468999999999997655556655554
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.86 E-value=1.4e-21 Score=171.49 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=104.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHh
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRY 160 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~ 160 (298)
-.++++.+|++++|+||||||||||+|+|++.. .+..|.... ..+..+++..|....
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-----------~~~~~i~~~dqi~~~----------- 78 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-----------AESASIPLVDRIFTR----------- 78 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-----------ccccccCCcCEEEEE-----------
Confidence 345666689999999999999999999999543 222222110 001223332221100
Q ss_pred CccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHH-HHH
Q 022337 161 GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV-LVK 239 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~-l~~ 239 (298)
++..+ ......+.+|.+++| +..+.+++.+|+++|+||||+|+|+..+..+... ++.
T Consensus 79 --------------------~~~~d-~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~ 136 (202)
T cd03243 79 --------------------IGAED-SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEH 136 (202)
T ss_pred --------------------ecCcc-cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 01111 112234456766665 6666788899999999999999999998888654 555
Q ss_pred HHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 240 LKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 240 l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+.+ .+.++|++||+.+.+. .|+++..++.|++...+...+
T Consensus 137 l~~-~~~~vi~~tH~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 137 LLE-KGCRTLFATHFHELAD-LPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHh-cCCeEEEECChHHHHH-HhhcCCCeEEEEEEEEecCCe
Confidence 544 4899999999988765 688999999999988876443
No 411
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=4.3e-21 Score=200.26 Aligned_cols=106 Identities=29% Similarity=0.474 Sum_probs=96.8
Q ss_pred HHHHHcCCCchh-hcCCCCCCChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 022337 176 KLLSLADLDSSF-LNKTGGEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252 (298)
Q Consensus 176 ~~l~~~~l~~~~-~~~~~~~LSgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~it 252 (298)
+.++.+||. ++ .++++.+|||||+|||+|||||+.+| +++||||||+|||+..++.+++.|+++++ .|.|||+|+
T Consensus 471 ~~L~~vGL~-~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVe 548 (943)
T PRK00349 471 KFLVDVGLD-YLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVE 548 (943)
T ss_pred HHhhccccC-CCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEe
Confidence 367888995 45 68999999999999999999999997 99999999999999999999999999975 499999999
Q ss_pred cCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhc
Q 022337 253 HSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSE 284 (298)
Q Consensus 253 Hd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~ 284 (298)
||++.+. .||+|++| ++|+++..|+++++..
T Consensus 549 H~~~~i~-~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 549 HDEDTIR-AADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCHHHHH-hCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999986 69999999 9999999999988743
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.6e-20 Score=171.91 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=66.2
Q ss_pred CCCCChhHHHHHHHHHHHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 192 GGEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 192 ~~~LSgGqkQRv~iAral~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
...+|+||+|+++|||+|+ .+|+++|+||||++||+..+..+.+.+.++ + .+++++|+.+.+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCchhccchh
Confidence 4468999999999999985 799999999999999999999999999865 2 3666676767777787
Q ss_pred ---CEEEEEeCCEE
Q 022337 263 ---DVVCLLVNGEI 273 (298)
Q Consensus 263 ---d~v~vl~~G~i 273 (298)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
No 413
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.84 E-value=6.8e-21 Score=167.68 Aligned_cols=143 Identities=19% Similarity=0.219 Sum_probs=104.3
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTV 154 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv 154 (298)
+..+.+|++|++++|++++|+||||+||||++|+++++. +..++|+-. |..+. .++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~v--pa~~~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFV--PAEYATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCc--chhhcCccC
Confidence 457999999999999999999999999999999999873 122233211 22222 255
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHH
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE 234 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~ 234 (298)
.|+|.. .++..+ -..+..+++|+|++|+ ..+.+++.+|+++|+|||++|+|+.....+.
T Consensus 72 ~d~I~~-------------------~~~~~d-~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~ 130 (204)
T cd03282 72 FNRLLS-------------------RLSNDD-SMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAIS 130 (204)
T ss_pred hhheeE-------------------ecCCcc-ccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHH
Confidence 555532 223322 2345567899999976 4556688999999999999999997766654
Q ss_pred -HHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 235 -DVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 235 -~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
..+..+.+. |.++|++||+.+.+...++
T Consensus 131 ~~il~~l~~~-~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 131 LAILECLIKK-ESTVFFATHFRDIAAILGN 159 (204)
T ss_pred HHHHHHHHhc-CCEEEEECChHHHHHHhhc
Confidence 456666544 8999999999998876653
No 414
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=1.3e-20 Score=196.33 Aligned_cols=104 Identities=30% Similarity=0.469 Sum_probs=95.0
Q ss_pred HHHHcCCCchh-hcCCCCCCChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 022337 177 LLSLADLDSSF-LNKTGGEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 177 ~l~~~~l~~~~-~~~~~~~LSgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itH 253 (298)
.+..+||. .+ +++++.+|||||+|||.|||||+.+| +++||||||+|||+.....+.+.|+++.++ |.|||+|+|
T Consensus 470 ~L~~vgL~-~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~-G~TVIvVeH 547 (924)
T TIGR00630 470 FLIDVGLD-YLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDL-GNTVIVVEH 547 (924)
T ss_pred hHhhcccc-ccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhC-CCEEEEEEC
Confidence 46777885 34 68999999999999999999999986 899999999999999999999999999764 999999999
Q ss_pred CHHHHHhhcCEEEEE------eCCEEEEeeChhhhh
Q 022337 254 SIKQIQRIADVVCLL------VNGEIVEVLKPDLLS 283 (298)
Q Consensus 254 d~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~ 283 (298)
|++.+. .||+|++| ++|+|++.|+++++.
T Consensus 548 d~~~i~-~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 548 DEETIR-AADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CHHHHh-hCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 999886 89999999 999999999998874
No 415
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.82 E-value=7e-20 Score=172.59 Aligned_cols=184 Identities=24% Similarity=0.296 Sum_probs=146.5
Q ss_pred EEeCCCCcceeeeeEEEeCCc-----EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 71 KESDDGAPILKGVNMEIPKGV-----IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 71 ~~y~~~~~vL~~isl~i~~Ge-----~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
++|++-+.-+.+..|.|+.|| ++..+|+||.||||++++++|.++|++|. ++..+ .++|=||
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykpq 409 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKPQ 409 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceecccc
Confidence 456655667889999999885 68899999999999999999999999862 22222 3677778
Q ss_pred CCC-CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 146 IPA-LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 146 ~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
... -+..||++-+.--.+ ..-.....+.+.++-+.++ +..++.+..|||||+|||++|.+|=+.+++++.|||.+-
T Consensus 410 kispK~~~tvR~ll~~kIr--~ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 410 KISPKREGTVRQLLHTKIR--DAYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred ccCccccchHHHHHHHHhH--hhhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 654 245688886642211 1111234566778888885 578999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
||.+.+..--..++++--+.++|-.+|.||.-.+-..||||++.+.
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 9999999888888886544578999999999988888999998753
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.80 E-value=1.3e-19 Score=165.66 Aligned_cols=142 Identities=23% Similarity=0.307 Sum_probs=102.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD-VLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL 169 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~-~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 169 (298)
..++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++...++++||+......+|.+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~---------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCP---------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccch----------
Confidence 578999999999999999999999999999999999986543 345666788888865322234444321
Q ss_pred cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 022337 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249 (298)
Q Consensus 170 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii 249 (298)
+ .. |+ ..++|+ .+|+++|+|||++ .+.+..++..+. .|.++|
T Consensus 182 -k--~~----------------------~~---~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~--~G~~vI 223 (270)
T TIGR02858 182 -K--AE----------------------GM---MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH--AGVSII 223 (270)
T ss_pred -H--HH----------------------HH---HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh--CCCEEE
Confidence 0 00 11 333343 6999999999974 344555555553 389999
Q ss_pred EEccCHHH--H-----------HhhcCEEEEEeCCEEEEeeChhhh
Q 022337 250 MVSHSIKQ--I-----------QRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 250 ~itHd~~~--~-----------~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
++||+.+. + ..++||+++|++|+ ..|+++++
T Consensus 224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 99997665 4 25689999999886 56666554
No 417
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.79 E-value=4.3e-19 Score=157.53 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=103.3
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTV 154 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv 154 (298)
...+.+|++++.++ ++++|+|||||||||++|+++++.-. |+ .|..+ + ..+..++++.| +|+ .++
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p--~~~~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---P--ASKAEIGVVDR---IFTRIGA 82 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---c--cccceecceee---EeccCCc
Confidence 34689999999987 99999999999999999999875421 11 12111 1 11345777755 333 366
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH--cCCCCeEEEeCc---CCCCCHHH
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL--ANEPEVLLLDEP---TSALDPIS 229 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral--~~~p~illLDEP---ts~LD~~~ 229 (298)
.||+..+. |.=...+..+++++ +.+|+++||||| |+++|+..
T Consensus 83 ~~~ls~g~---------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~ 129 (216)
T cd03284 83 SDDLAGGR---------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS 129 (216)
T ss_pred hhhhccCc---------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH
Confidence 66665431 11122222333333 579999999999 88888865
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
. ....+..+.+..+.++|++||+.+ +.+++|++..+++|++...++.+++
T Consensus 130 ~--~~~il~~l~~~~~~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 130 I--AWAIVEYLHEKIGAKTLFATHYHE-LTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred H--HHHHHHHHHhccCCcEEEEeCcHH-HHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 2 223333343333789999999975 4568999888888988776665554
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.73 E-value=3.8e-18 Score=147.81 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=60.7
Q ss_pred hcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 188 LNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
.++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. ..++.+.++.+.++|++||+++ +.++||+--
T Consensus 55 ~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~~~ 132 (185)
T smart00534 55 LAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADEHP 132 (185)
T ss_pred hhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhcCc
Confidence 456677899988874444432 4599999999999999999887775 4455565434789999999996 557887533
Q ss_pred EEeCCEE
Q 022337 267 LLVNGEI 273 (298)
Q Consensus 267 vl~~G~i 273 (298)
-+++++.
T Consensus 133 ~v~~~~~ 139 (185)
T smart00534 133 GVRNLHM 139 (185)
T ss_pred cceEEEE
Confidence 3344443
No 419
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=6.7e-18 Score=133.30 Aligned_cols=77 Identities=26% Similarity=0.161 Sum_probs=69.5
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
..+|++++|++++|++++|+||||||||||++++. +|++.++|.++..++..+.++.+++++|+ +|..|++|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999986 89999999999877766667778888888 78889999
Q ss_pred HhHhC
Q 022337 157 NIRYG 161 (298)
Q Consensus 157 ni~~~ 161 (298)
||.++
T Consensus 74 Ni~~~ 78 (107)
T cd00820 74 NIFLI 78 (107)
T ss_pred hceee
Confidence 99985
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.71 E-value=4.1e-16 Score=148.52 Aligned_cols=77 Identities=26% Similarity=0.358 Sum_probs=68.2
Q ss_pred CCCChhHHHHHHHHHHHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc-
Q 022337 193 GEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA- 262 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~- 262 (298)
..+|.||+|++++|++|+ .+|+|+|||||+++||+..++.+++.+.++ +..++++||+.+.+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhhhhhhhc
Confidence 589999999999999996 799999999999999999999999998764 357999999988776664
Q ss_pred -CEEEEEeCCEE
Q 022337 263 -DVVCLLVNGEI 273 (298)
Q Consensus 263 -d~v~vl~~G~i 273 (298)
++++.+++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999987
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.71 E-value=3.8e-17 Score=144.66 Aligned_cols=177 Identities=27% Similarity=0.335 Sum_probs=101.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHh-cCCC-CC-ccEEEECCEeCCC--CCHHHHhcceEEEeCCCCCC----c
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALN-RLWE-PP-SGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALF----E 151 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~~-p~-~G~I~i~g~~i~~--~~~~~~~~~ig~v~Q~~~l~----~ 151 (298)
+...+.+.+| +++|+|||||||||++..|. .|-. +. +.+..-...-+.. .........|...+++..-. .
T Consensus 16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 4667777654 99999999999999999993 3331 11 1111000000000 00011123455555554311 1
Q ss_pred c--cHHHHhHh-Cc---cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH----cCCCCeEEEeCc
Q 022337 152 G--TVVDNIRY-GP---QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL----ANEPEVLLLDEP 221 (298)
Q Consensus 152 ~--tv~eni~~-~~---~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral----~~~p~illLDEP 221 (298)
. .+...+.- +. ...+.......+.+.+....+.. ..||||||.+++||--| ..+++++|||||
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEv 167 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEV 167 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEEST
T ss_pred cccccccccccccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccccc
Confidence 0 11100000 00 01111223455666777666642 28999999999998665 357899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL 268 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl 268 (298)
.++||..++..+.++|+++.+ +.-+|++||+.... ..||+.+.+
T Consensus 168 d~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~-~~a~~~~~v 211 (220)
T PF02463_consen 168 DAALDEQNRKRLADLLKELSK--QSQFIITTHNPEMF-EDADKLIGV 211 (220)
T ss_dssp TTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-HHHH-TT-SEEEEE
T ss_pred ccccccccccccccccccccc--cccccccccccccc-ccccccccc
Confidence 999999999999999999864 57899999998766 568987655
No 422
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.71 E-value=1.2e-16 Score=141.61 Aligned_cols=138 Identities=20% Similarity=0.239 Sum_probs=94.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc--cc
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR--LWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE--GT 153 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g--l~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~--~t 153 (298)
.|-+|+++.=..+.+++|.||||+|||||||.++. ++ ++.|...... ...++|..|...-+. .+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 45556665422237899999999999999999984 33 5667654321 124677777542211 12
Q ss_pred HHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH
Q 022337 154 VVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233 (298)
Q Consensus 154 v~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~ 233 (298)
+.+++ . .+ .-+.||+++|++++.+|+++|+|||++|+|+.....+
T Consensus 85 i~~~~-------------------------S-~f---------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~ 129 (213)
T cd03281 85 VSSGQ-------------------------S-AF---------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGL 129 (213)
T ss_pred hhhcc-------------------------c-hH---------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHH
Confidence 21111 1 11 3457999999999999999999999999999765444
Q ss_pred -HHHHHHHHhc--CCcEEEEEccCHHHHHhhc
Q 022337 234 -EDVLVKLKKK--HGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 234 -~~~l~~l~~~--~g~tii~itHd~~~~~~~~ 262 (298)
...++++.++ .+.++|++||+.+.+....
T Consensus 130 ~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 130 LIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred HHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 5677777653 1358999999999887653
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.67 E-value=1.5e-16 Score=164.05 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=101.1
Q ss_pred eEEEEeEEEEeCCCCccee-----eeeEEEeCC-cEEEEEcCCCccHHHHHHHHhcC-CCCCccEEEECCEeCCCCCHHH
Q 022337 63 KFRVRELRKESDDGAPILK-----GVNMEIPKG-VIMGIIGPSGSGKSTLLRALNRL-WEPPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~-----~isl~i~~G-e~~~iiG~nGsGKSTLlk~l~gl-~~p~~G~I~i~g~~i~~~~~~~ 135 (298)
.+.++++.. ++++ .+|+++.++ ++++|.||||+|||||||+|+|. +.+..|.
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~--------------- 353 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI--------------- 353 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------
Confidence 466666553 3443 378888877 89999999999999999999987 3344431
Q ss_pred HhcceEEEeCCCC-CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 136 LRRKVGMLFQIPA-LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 136 ~~~~ig~v~Q~~~-l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+||.... .+ .+.+++... ++..+ -.....+++|+|++|++.|++++ .+|+
T Consensus 354 ------~Vpa~~~~~~--~~~d~i~~~-------------------i~~~~-si~~~LStfS~~m~~~~~il~~~-~~~s 404 (771)
T TIGR01069 354 ------PIPANEHSEI--PYFEEIFAD-------------------IGDEQ-SIEQNLSTFSGHMKNISAILSKT-TENS 404 (771)
T ss_pred ------CccCCccccc--cchhheeee-------------------cChHh-HHhhhhhHHHHHHHHHHHHHHhc-CCCc
Confidence 3333221 01 111122100 01011 12234668999999999999887 7899
Q ss_pred eEEEeCcCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEccCHHHH
Q 022337 215 VLLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
++|+|||++|+||.....+. .++..+.+ .|.++|++||+.+..
T Consensus 405 LvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~eL~ 448 (771)
T TIGR01069 405 LVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKELK 448 (771)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence 99999999999999999994 56666654 589999999998864
No 424
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.65 E-value=1.3e-16 Score=150.72 Aligned_cols=173 Identities=26% Similarity=0.379 Sum_probs=123.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe---CCCC-CHHHHhcce--------------EEEeCCCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD---ITDL-DVLSLRRKV--------------GMLFQIPAL 149 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~---i~~~-~~~~~~~~i--------------g~v~Q~~~l 149 (298)
.+|++.+++|.||-||||-+|+++|-.+|.-|.-- ++-+ +-.+ ...++.... -||.|-|..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 57999999999999999999999999999877542 1111 1000 001111000 011110100
Q ss_pred CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHH
Q 022337 150 FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229 (298)
Q Consensus 150 ~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~ 229 (298)
...+|.+.+.- ..+++...++++.+.|. ...++...+||||+-||.+||.+.+++.++.++|||.+.||.+.
T Consensus 177 ~k~~v~~~l~~-------~~~r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQ 248 (592)
T KOG0063|consen 177 VKGTVGSLLDR-------KDERDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQ 248 (592)
T ss_pred HHHHHHHHHHH-------HhhcccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHH
Confidence 11122222211 11123455677777775 57888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
+..--..|+.+... +.-||+|.||++.+..+.|-+.++..
T Consensus 249 RLkaA~~IRsl~~p-~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 249 RLKAAITIRSLINP-DRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred hhhHHHHHHHhhCC-CCeEEEEEeechHHHhhhcceeEEec
Confidence 99999999998764 78899999999999888999988864
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.64 E-value=2.2e-15 Score=146.22 Aligned_cols=168 Identities=21% Similarity=0.269 Sum_probs=117.1
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC---CC-----CCHHHHhcceEEEeCCC
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI---TD-----LDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i---~~-----~~~~~~~~~ig~v~Q~~ 147 (298)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|++- .+ ++...+++.+.++.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45699999 99999999999999999999999999999999999999965543 32 22334567899997643
Q ss_pred C--CC------c-ccHHHHhHhCccccCCC-----ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 148 A--LF------E-GTVVDNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 148 ~--l~------~-~tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
. +. . .|+.|+..-- +.+ .+--+..++.+.+++ .+.+|
T Consensus 224 ~~~~~r~~~~~~a~~iAEyfr~~----g~~Vll~~Dsltr~A~A~rEisl-------------------------~~ge~ 274 (438)
T PRK07721 224 QPALMRIKGAYTATAIAEYFRDQ----GLNVMLMMDSVTRVAMAQREIGL-------------------------AVGEP 274 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC----CCcEEEEEeChHHHHHHHHHHHH-------------------------hcCCC
Confidence 2 11 0 1233333210 000 011112222222221 01222
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKK-KHGM-----TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~-~~g~-----tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+ .|+|+||.....+.+++.++.. +.|. ||++.+||++. .+||++.++.+|+|+.+++..+
T Consensus 275 P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 275 P------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred C------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHH
Confidence 2 2689999999999999999863 3475 99999999995 7899999999999999887654
No 426
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.63 E-value=6.3e-16 Score=139.97 Aligned_cols=179 Identities=18% Similarity=0.196 Sum_probs=113.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--EEEECCEeCCCCCHHHHhcce---EEE--eCCCCCCcc----
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--TVFLDGRDITDLDVLSLRRKV---GML--FQIPALFEG---- 152 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--~I~i~g~~i~~~~~~~~~~~i---g~v--~Q~~~l~~~---- 152 (298)
=+.+.+|+.++|+||+|+|||||++.+++......+ .+++....-+..+..++.+.+ -++ ++++.....
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~ 89 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAE 89 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHH
Confidence 357899999999999999999999999999877643 323321111113444444433 112 222221111
Q ss_pred cHHHHhHhCccccCCC-----ccHHHHHHHHHHcCCCchhhcCCCCCCChhH--------HHHHHHHHHHcCCCCeEEEe
Q 022337 153 TVVDNIRYGPQLRGKK-----LTENEVYKLLSLADLDSSFLNKTGGEISVGQ--------AQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 153 tv~eni~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--------kQRv~iAral~~~p~illLD 219 (298)
.+.+...+.. ..+.. .+-.+..+..+.... ..+..+|||+ +||+++||++.++++|.+|
T Consensus 90 ~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~------~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l- 161 (249)
T cd01128 90 MVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVP------PSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII- 161 (249)
T ss_pred HHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccc------cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe-
Confidence 1111111100 01111 112233344443333 3355679999 9999999999999999999
Q ss_pred CcCCCCCHHHHHH-HHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 220 EPTSALDPISTQN-IEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 220 EPts~LD~~~~~~-~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
||+.+|..+... ++ +.++.. .+.|.|++||++.... .+|.|.+|+.|++.+
T Consensus 162 -~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~la~~~-~~paI~vl~s~sr~~ 213 (249)
T cd01128 162 -ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRLAERR-IFPAIDILKSGTRKE 213 (249)
T ss_pred -eeheecCCCcccchH--HHHHhc-CCCcEEEEchHHhhCC-CCCeEEEcCCCCccc
Confidence 999999655543 44 454432 4789999999999885 579999999999853
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=9.1e-16 Score=135.34 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=87.4
Q ss_pred EEEEEcCCCccHHHHH-HHHhcCCCC-----------------CccEEEECCEeCCCCCH-HHHhcceEEEeCCCC-C--
Q 022337 92 IMGIIGPSGSGKSTLL-RALNRLWEP-----------------PSGTVFLDGRDITDLDV-LSLRRKVGMLFQIPA-L-- 149 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLl-k~l~gl~~p-----------------~~G~I~i~g~~i~~~~~-~~~~~~ig~v~Q~~~-l-- 149 (298)
.++|+|+||||||||+ +.+.|..++ +.|.+.+.+.|...... ..++ .+|..+... +
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~--~~~~~~~~~~i~v 88 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLR--DGYYIKGQCAIIM 88 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhh--HHHhccCCEEEEE
Confidence 4799999999999999 689998764 46788888877643211 1111 122222211 0
Q ss_pred Cc---c-c---HH----------HHhHhCccccCCCccH----HHHHHHHHHcCCCchhhcCCCCCCChh--HHHHHHHH
Q 022337 150 FE---G-T---VV----------DNIRYGPQLRGKKLTE----NEVYKLLSLADLDSSFLNKTGGEISVG--QAQRVALA 206 (298)
Q Consensus 150 ~~---~-t---v~----------eni~~~~~~~~~~~~~----~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkQRv~iA 206 (298)
|+ . | +. +|+.+.......+..+ .+..+..+..++. +. ..+..||+ |++++.||
T Consensus 89 ~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~--e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 89 FDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQ--YY--DISAKSNYNFEKPFLWLA 164 (215)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCE--EE--EEeCCCCCCHHHHHHHHH
Confidence 11 1 1 11 1111000000111000 1222333444432 11 23344444 89999999
Q ss_pred HHHcCCCCeEEEeCcC-----CCCCHHHHHHHHHHHHHHHh
Q 022337 207 RTLANEPEVLLLDEPT-----SALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 207 ral~~~p~illLDEPt-----s~LD~~~~~~~~~~l~~l~~ 242 (298)
|+++.+|+++++|||| ++|||..++.+.+.++++++
T Consensus 165 ~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 165 RRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999 99999999999999999853
No 428
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=7.2e-15 Score=130.97 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=91.6
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc-CCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR-LWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g-l~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
+.+.+|++|++.+|++++|.||||+||||++|++++ .+.++.|...... . -.+++..|=.. .....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~i~~--~~~~~ 84 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDSVLT--RMGAS 84 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccceEEE--EecCc
Confidence 468999999999999999999999999999999999 6778888765431 1 12333322100 00111
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH-H
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI-E 234 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~-~ 234 (298)
|++.-+ + +.+ ..+.+|++-+-.-+.+|+++|+|||.+|.|+.....+ .
T Consensus 85 d~~~~~---------------------~---------StF-~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~ 133 (222)
T cd03287 85 DSIQHG---------------------M---------STF-MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAY 133 (222)
T ss_pred cccccc---------------------c---------chH-HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHH
Confidence 111110 0 011 1223333333334578999999999999987766664 4
Q ss_pred HHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 235 DVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 235 ~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
..++.+.+..+.++|++||+.+...
T Consensus 134 ~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 134 ATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred HHHHHHHhccCCeEEEEcccHHHHH
Confidence 5666665544789999999998764
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.59 E-value=3.6e-15 Score=154.23 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=100.3
Q ss_pred eEEEe-CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE-EEeCCCCCCcccHHHHhHhC
Q 022337 84 NMEIP-KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG-MLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 84 sl~i~-~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig-~v~Q~~~l~~~tv~eni~~~ 161 (298)
++.+. .+.++.|.|||++||||+||.++... +-.++| +||-... ...++.++|..
T Consensus 320 di~l~~~~~~~iITGpN~gGKTt~lktigl~~---------------------~maq~G~~vpa~~~-~~i~~~~~i~~- 376 (782)
T PRK00409 320 DISLGFDKTVLVITGPNTGGKTVTLKTLGLAA---------------------LMAKSGLPIPANEP-SEIPVFKEIFA- 376 (782)
T ss_pred eeEECCCceEEEEECCCCCCcHHHHHHHHHHH---------------------HHHHhCCCcccCCC-ccccccceEEE-
Confidence 44444 45689999999999999999996431 111222 4444321 00122233311
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH-HHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-VLVKL 240 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~-~l~~l 240 (298)
.+|-.+ -..+..+++|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++..+
T Consensus 377 ------------------~ig~~~-si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l 436 (782)
T PRK00409 377 ------------------DIGDEQ-SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL 436 (782)
T ss_pred ------------------ecCCcc-chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 122221 23456778999999999999999 8999999999999999999998865 45555
Q ss_pred HhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 241 KKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 241 ~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
.+ .|.++|++||+.+.....+++..++ ++.+..
T Consensus 437 ~~-~~~~vIitTH~~el~~~~~~~~~v~-~~~~~~ 469 (782)
T PRK00409 437 RK-RGAKIIATTHYKELKALMYNREGVE-NASVEF 469 (782)
T ss_pred HH-CCCEEEEECChHHHHHHHhcCCCeE-EEEEEE
Confidence 54 4899999999999887767765544 455544
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.57 E-value=6.2e-15 Score=148.04 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=70.4
Q ss_pred CCChhHHHHHHHHHHHcCC----CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 194 EISVGQAQRVALARTLANE----PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~~----p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
.|||||+||++||++++.. |++|||||||+|||+..+..+.+.|+++.+ +.+||+|||++..+. +||++++|+
T Consensus 440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~ad~~~~l~ 516 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLPQVAA-HADAHFKVE 516 (563)
T ss_pred hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChHHHHH-hcCeEEEEE
Confidence 6899999999999999985 699999999999999999999999999864 799999999998885 899999999
Q ss_pred CCE
Q 022337 270 NGE 272 (298)
Q Consensus 270 ~G~ 272 (298)
+|.
T Consensus 517 k~~ 519 (563)
T TIGR00634 517 KEG 519 (563)
T ss_pred Ecc
Confidence 864
No 431
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=8.7e-15 Score=156.37 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=77.9
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHcC----------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 187 FLNKTGGEISVGQAQRVALARTLAN----------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 187 ~~~~~~~~LSgGqkQRv~iAral~~----------~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
..++++.+|||||++||+||+||+. +|++||+||||++||+.+...+++.|.++.+ .|++|+||||+++
T Consensus 943 ~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~ 1021 (1042)
T TIGR00618 943 GSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPE 1021 (1042)
T ss_pred CCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHH
Confidence 3456789999999999999999986 7999999999999999999999999999976 5999999999999
Q ss_pred HHHhhcCEEEEEeCC
Q 022337 257 QIQRIADVVCLLVNG 271 (298)
Q Consensus 257 ~~~~~~d~v~vl~~G 271 (298)
....+||+|.|++.|
T Consensus 1022 ~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1022 FRERIPHRILVKKTN 1036 (1042)
T ss_pred HHHhhCCEEEEEECC
Confidence 999999999999754
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.54 E-value=1.4e-14 Score=145.14 Aligned_cols=79 Identities=25% Similarity=0.336 Sum_probs=70.3
Q ss_pred CCCCCChhHHHHHHHHHHHc----------CCCCeEEEeCcC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 191 TGGEISVGQAQRVALARTLA----------NEPEVLLLDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 191 ~~~~LSgGqkQRv~iAral~----------~~p~illLDEPt-s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
.+.+||||||||++||+||+ .+|+++|||||| ++||+..+..+.+.|.++ + |.|||+|||+.+..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~~~~- 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKDHDP- 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECchhch-
Confidence 45799999999999999988 599999999998 789999999999999988 3 78999999997766
Q ss_pred hhcCEEEEEeC-CEE
Q 022337 260 RIADVVCLLVN-GEI 273 (298)
Q Consensus 260 ~~~d~v~vl~~-G~i 273 (298)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 56999999986 544
No 433
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.53 E-value=9.6e-14 Score=124.43 Aligned_cols=159 Identities=18% Similarity=0.292 Sum_probs=96.6
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHH-HHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTL-LRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTL-lk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+.++++.+.++++ +++|+++.|.|||||||||| +++++++.++....+++.... +..
T Consensus 8 ~~~~~ld~~l~gg----------i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----~~~-------- 65 (230)
T PRK08533 8 LSRDELHKRLGGG----------IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----TTT-------- 65 (230)
T ss_pred EEEeeeehhhCCC----------CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----CHH--------
Confidence 5566777766433 79999999999999999999 799999876544444443211 111
Q ss_pred EeCCCCCCcccHHHHh-HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc----CCCCeEE
Q 022337 143 LFQIPALFEGTVVDNI-RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA----NEPEVLL 217 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~----~~p~ill 217 (298)
...++. .++. +. .+....=.+. +.+-.+ .+|+++.++-.+++.+- .+|++++
T Consensus 66 ----------~~~~~~~~~g~-----~~-----~~~~~~~~l~--~~~~~~-~~~~~~~~~~~l~~il~~~~~~~~~~lV 122 (230)
T PRK08533 66 ----------EFIKQMMSLGY-----DI-----NKKLISGKLL--YIPVYP-LLSGNSEKRKFLKKLMNTRRFYEKDVII 122 (230)
T ss_pred ----------HHHHHHHHhCC-----ch-----HHHhhcCcEE--EEEecc-cccChHHHHHHHHHHHHHHHhcCCCEEE
Confidence 111111 1111 10 0111100110 111122 36666666555555443 3699999
Q ss_pred EeCcCCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH--------HHhhcCEEEEEe
Q 022337 218 LDEPTSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLV 269 (298)
Q Consensus 218 LDEPts~L----D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~--------~~~~~d~v~vl~ 269 (298)
+||||+++ |+...+.+.+.+++++++ |.|+++ ||+... +..+||-|+.|+
T Consensus 123 IDe~t~~l~~~~d~~~~~~l~~~l~~l~~~-g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 123 IDSLSSLISNDASEVAVNDLMAFFKRISSL-NKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred EECccHHhcCCcchHHHHHHHHHHHHHHhC-CCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 99999999 888889999999988664 776655 555443 244567777776
No 434
>PRK10869 recombination and repair protein; Provisional
Probab=99.52 E-value=3.9e-14 Score=141.76 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=69.6
Q ss_pred CCChhHHHHHHHHHHHcC----CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 194 EISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 194 ~LSgGqkQRv~iAral~~----~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
.|||||+||++||++++. +|+++|+|||++|||+.+...+.+.|+++.+ +.+||+|||++..+ .+||+++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~ad~~~~v~ 506 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLPQVA-GCGHQHFFVS 506 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH-HhCCEEEEEe
Confidence 479999999999999997 5899999999999999999999999999964 68999999999876 6899999998
Q ss_pred CCE
Q 022337 270 NGE 272 (298)
Q Consensus 270 ~G~ 272 (298)
++.
T Consensus 507 k~~ 509 (553)
T PRK10869 507 KET 509 (553)
T ss_pred ccc
Confidence 753
No 435
>PRK13695 putative NTPase; Provisional
Probab=99.51 E-value=6.1e-15 Score=126.23 Aligned_cols=82 Identities=11% Similarity=0.141 Sum_probs=65.2
Q ss_pred cCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc--CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 189 NKTGGEISVGQAQRVALARTLANEPEVLLLDEP--TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~~~p~illLDEP--ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
.++...+||+++-++.+++..+.+|+++++||| +.++|+. +.+.+.++.+ .+.++|+++|+- .+..++|++.
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~-~~~~~i~v~h~~-~~~~~~~~i~ 146 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLD-SEKPVIATLHRR-SVHPFVQEIK 146 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHh-CCCeEEEEECch-hhHHHHHHHh
Confidence 345567999999999999999999999999995 4455544 4555555553 488999999995 5557899999
Q ss_pred EEeCCEEEEe
Q 022337 267 LLVNGEIVEV 276 (298)
Q Consensus 267 vl~~G~i~~~ 276 (298)
.+.+|+|.+.
T Consensus 147 ~~~~~~i~~~ 156 (174)
T PRK13695 147 SRPGGRVYEL 156 (174)
T ss_pred ccCCcEEEEE
Confidence 9999999765
No 436
>PRK03918 chromosome segregation protein; Provisional
Probab=99.47 E-value=1.3e-13 Score=144.90 Aligned_cols=80 Identities=29% Similarity=0.336 Sum_probs=70.2
Q ss_pred cCCCCCCChhHHH------HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 189 NKTGGEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 189 ~~~~~~LSgGqkQ------Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
+.++..|||||+| |+++|++++.+|+++|+||||++||+..+..+.++|..+... +.+||+||||.+.. .+|
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~-~~~iiiith~~~~~-~~~ 860 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRK-IPQVIIVSHDEELK-DAA 860 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHH-HhC
Confidence 3567899999999 556667889999999999999999999999999999988654 78999999999855 689
Q ss_pred CEEEEEeC
Q 022337 263 DVVCLLVN 270 (298)
Q Consensus 263 d~v~vl~~ 270 (298)
|++++|+.
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999983
No 437
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.47 E-value=1.9e-13 Score=132.11 Aligned_cols=169 Identities=22% Similarity=0.236 Sum_probs=123.9
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.++-+.++..|..+..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+.-
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------------- 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------------- 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------------
Confidence 467777887776566788885 99999999999999999999999999999999999887766542
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc-------CCCCe
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA-------NEPEV 215 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~-------~~p~i 215 (298)
.++.|.+..- +..-++.....=....+-|.|+|+|++.+.+.+ .++-+
T Consensus 195 ---------~ev~e~~~~~----------------l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VL 249 (432)
T PRK06793 195 ---------REVKDFIRKE----------------LGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVL 249 (432)
T ss_pred ---------ccHHHHHHHH----------------hhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 1344443211 111112111111345678999999999999887 78999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
+++|+||...|+. +++...+.+.-.. |.+..+.||-. ++++|.-...+|.|....+
T Consensus 250 lilDslTr~a~A~--reisl~~~e~p~~-G~~~~~~s~l~----~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 250 LMMDSVTRFADAR--RSVDIAVKELPIG-GKTLLMESYMK----KLLERSGKTQKGSITGIYT 305 (432)
T ss_pred EEecchHHHHHHH--HHHHHHhcCCCCC-Ceeeeeeccch----hHHHHhccCCCcceEEEEE
Confidence 9999999999996 6676677766543 88888888843 3444544457899876554
No 438
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.47 E-value=2e-13 Score=148.84 Aligned_cols=107 Identities=22% Similarity=0.347 Sum_probs=80.3
Q ss_pred CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCC--------CchhhcCCCCCCChhHHH------HHHHHHHHcCCCC
Q 022337 149 LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADL--------DSSFLNKTGGEISVGQAQ------RVALARTLANEPE 214 (298)
Q Consensus 149 l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l--------~~~~~~~~~~~LSgGqkQ------Rv~iAral~~~p~ 214 (298)
.|.+|+.+||.+.. ..+.+ ..++...+. ..+-....++.||||||| |++||||++.+|+
T Consensus 1153 ~~~~~~~~~i~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~ 1225 (1311)
T TIGR00606 1153 TYRGQDIEYIEIRS-----DADEN--VSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCG 1225 (1311)
T ss_pred HcCccHHHHhhcCC-----CCChH--HHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCCC
Confidence 37789999999832 11111 122222221 111122345689999999 9999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEccCHHHHHhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKK----KHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~----~~g~tii~itHd~~~~~~~~ 262 (298)
+|+|||||++||+.+...+.+.|.++.. ..|.+||+||||++++..+|
T Consensus 1226 il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~ 1277 (1311)
T TIGR00606 1226 IIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLG 1277 (1311)
T ss_pred EEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHh
Confidence 9999999999999999999999988742 23789999999999998886
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=1.2e-13 Score=122.70 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=92.4
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-cc
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GT 153 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~t 153 (298)
++.+-+|++|++++|++++|.||||+||||+++++++..-.. -|. .+ +.+ ..+++++.+ +|. ..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~v---pa~--~~~i~~~~~---i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DV---PAK--SMRLSLVDR---IFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------cc---Ccc--ccEeccccE---EEEecC
Confidence 457899999999999999999999999999999999864211 121 11 000 011222111 111 12
Q ss_pred HHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH
Q 022337 154 VVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233 (298)
Q Consensus 154 v~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~ 233 (298)
..|++..+. ++++ .|.++++-.-..+.+|+++|+|||++|+|+.....+
T Consensus 82 ~~d~~~~~~------------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~l 130 (218)
T cd03286 82 ARDDIMKGE------------------------------STFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAI 130 (218)
T ss_pred cccccccCc------------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHH
Confidence 222222111 0111 233444433344578999999999999999999988
Q ss_pred HHH-HHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 234 EDV-LVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 234 ~~~-l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
... +..+.+..+.++|++||+++.+..++
T Consensus 131 a~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 131 AHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 888 56665433899999999999988776
No 440
>PRK01156 chromosome segregation protein; Provisional
Probab=99.45 E-value=3.1e-13 Score=142.49 Aligned_cols=79 Identities=29% Similarity=0.423 Sum_probs=69.0
Q ss_pred CCCCCCChhHHHHHHH------HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcC-C-cEEEEEccCHHHHHhh
Q 022337 190 KTGGEISVGQAQRVAL------ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKH-G-MTIVMVSHSIKQIQRI 261 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~i------Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~-g-~tii~itHd~~~~~~~ 261 (298)
..+..|||||++|++| ||+++.+|++++|||||++||+..+..+.+++....+.. + .++|+||||.+.+ .+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 3578999999999975 599999999999999999999999999999998654332 3 4899999999977 68
Q ss_pred cCEEEEEe
Q 022337 262 ADVVCLLV 269 (298)
Q Consensus 262 ~d~v~vl~ 269 (298)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 441
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.45 E-value=1.3e-13 Score=118.43 Aligned_cols=82 Identities=17% Similarity=0.210 Sum_probs=69.4
Q ss_pred hhcCCCCCCChhHHH------HHHHHHHHcCCCCeEEEeCcCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEccCHHH
Q 022337 187 FLNKTGGEISVGQAQ------RVALARTLANEPEVLLLDEPTSALD---PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 187 ~~~~~~~~LSgGqkQ------Rv~iAral~~~p~illLDEPts~LD---~~~~~~~~~~l~~l~~~~g~tii~itHd~~~ 257 (298)
..+..+..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.++++.+++. |.|+|+++|+...
T Consensus 64 ~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~ 142 (187)
T cd01124 64 IVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRF-GVTTLLTSEQSGL 142 (187)
T ss_pred EEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHC-CCEEEEEeccccC
Confidence 456778899999998 5555555678999999999999999 88888888888888654 9999999998765
Q ss_pred ---------HHhhcCEEEEEe
Q 022337 258 ---------IQRIADVVCLLV 269 (298)
Q Consensus 258 ---------~~~~~d~v~vl~ 269 (298)
+..+||.++.|+
T Consensus 143 ~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 143 EGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CCcccCcCceeEeeeEEEEEE
Confidence 678899999887
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.44 E-value=3.4e-13 Score=144.00 Aligned_cols=81 Identities=28% Similarity=0.259 Sum_probs=75.1
Q ss_pred cCCCCCCChhHHHHHHHHHHHcC--------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh
Q 022337 189 NKTGGEISVGQAQRVALARTLAN--------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~~--------~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~ 260 (298)
++++.+|||||+|+++||+||+. +|++||+||||++||+.+.+.+++.|..+.+. |+||+||||..+...+
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~-g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNAS-GKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEecHHHHHHh
Confidence 47889999999999999999996 89999999999999999999999999999754 9999999999999988
Q ss_pred hcCEEEEEeC
Q 022337 261 IADVVCLLVN 270 (298)
Q Consensus 261 ~~d~v~vl~~ 270 (298)
+..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 8888888865
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.42 E-value=3.1e-13 Score=118.22 Aligned_cols=66 Identities=24% Similarity=0.436 Sum_probs=54.5
Q ss_pred CCCCChhHHHHHHHHHHHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 192 GGEISVGQAQRVALARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 192 ~~~LSgGqkQRv~iAral~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
...+|.|+||.+.++.++...+ .++++|||-++|.|..++.+.+.|.+..+ .+.-+|++||.+..+
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GGG-
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccchhc
Confidence 4567999999999998888766 89999999999999999999999988865 478899999998654
No 444
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.42 E-value=1.6e-12 Score=131.28 Aligned_cols=115 Identities=28% Similarity=0.422 Sum_probs=96.1
Q ss_pred HHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC--CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 178 LSLADLDSSFLNKTGGEISVGQAQRVALARTLANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 178 l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~--p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
|..+||+---+++...+|||||.||+.||.-+-.. -=+++||||+.||-++--+++++.|+++.. .|-|+|+|.||.
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDe 543 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDE 543 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCH
Confidence 33456642235788899999999999999999876 348899999999999999999999999965 599999999999
Q ss_pred HHHHhhcCEEEEE------eCCEEEEeeChhhhhccCChHHHHHh
Q 022337 256 KQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 256 ~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
+.+. .||+|+-| +.|+|++.|+++++..+.+.++-+|+
T Consensus 544 dti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~YL 587 (935)
T COG0178 544 DTIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQYL 587 (935)
T ss_pred HHHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHhh
Confidence 8885 59999976 57899999999999876656655543
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.39 E-value=2.7e-12 Score=133.89 Aligned_cols=69 Identities=25% Similarity=0.348 Sum_probs=61.3
Q ss_pred cCCCCeEEEeCcCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH---------hhcCEEEEEeCCEEEEeeCh
Q 022337 210 ANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ---------RIADVVCLLVNGEIVEVLKP 279 (298)
Q Consensus 210 ~~~p~illLDEPts~L-D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~---------~~~d~v~vl~~G~i~~~g~~ 279 (298)
..+|+++++|||+.+| |+..++.+.+.++++.+. |.+++++||+++.+. ..|+++++|.+|++...+..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKA-NCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999998764 889999999999885 57999999999998766543
No 446
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.39 E-value=5.8e-13 Score=142.88 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=70.1
Q ss_pred hcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 188 LNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
.+.++..||||||||++||++++ .+|+++||||||++||+.++..+.++|.++++ +.++|||||++..+ .+||
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~~~-~~~d 1159 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKGTM-EVAD 1159 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChhHH-HHhh
Confidence 45678899999999999999984 67899999999999999999999999999864 57899999999976 5799
Q ss_pred EEEEEe
Q 022337 264 VVCLLV 269 (298)
Q Consensus 264 ~v~vl~ 269 (298)
+++.+.
T Consensus 1160 ~~~~~~ 1165 (1179)
T TIGR02168 1160 QLYGVT 1165 (1179)
T ss_pred hHeeee
Confidence 987554
No 447
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.37 E-value=3.1e-13 Score=131.00 Aligned_cols=67 Identities=25% Similarity=0.367 Sum_probs=56.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhcceEEEeCCC
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGRDITDLDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~ig~v~Q~~ 147 (298)
.+|++|||++++||+++|+|||||||||||+ +|+.+|++| +|.++|.++...+..++.. +-+|||+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~-LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMET-LDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHH-HHHHHHhh
Confidence 5899999999999999999999999999999 888999998 7999999997655433211 11888865
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.36 E-value=1.1e-12 Score=122.42 Aligned_cols=144 Identities=14% Similarity=0.168 Sum_probs=97.8
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCc
Q 022337 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGP 162 (298)
Q Consensus 83 isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~ 162 (298)
+++.++.|+.++|+||+|||||||+++|+++++|+.|.+.+.+ ..++.... +..+.++.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCCC--------------
Confidence 5577889999999999999999999999999999999888742 22222110 111221111000
Q ss_pred cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh
Q 022337 163 QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~ 242 (298)
. + ....| ..-.++.+|-.+|+++++|||.+ .+.+++++.+..
T Consensus 200 -------~-----------~---------~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~ 241 (308)
T TIGR02788 200 -------Q-----------G---------LAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT 241 (308)
T ss_pred -------C-----------C---------cCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc
Confidence 0 0 00111 12246677889999999999996 345666776643
Q ss_pred cCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 243 KHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 243 ~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
.+.+++.++|..+. ....+|+..|..|++...|.+.+..
T Consensus 242 -g~~~~i~T~Ha~~~-~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 242 -GHPGSITTLHAGSP-EEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred -CCCeEEEEEeCCCH-HHHHHHHHHHhhccccccCCCHHHH
Confidence 23456999999984 4568999999999988888776654
No 449
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.35 E-value=4e-12 Score=105.37 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=80.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccH
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE 171 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 171 (298)
++.|.||||+||||+++.+++...+..|.|.+.+.+... .. ..++... . .
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~---~~------------------~~~~~~~-~-----~--- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI---EE------------------LTERLIG-E-----S--- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch---HH------------------HHHHHhh-h-----h---
Confidence 368999999999999999999887766666554332211 00 1111100 0 0
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC----------CCCHHHHHHHHHHHHHHH
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS----------ALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts----------~LD~~~~~~~~~~l~~l~ 241 (298)
.....+.. .+........+.++.++++.+++...+|+++++|||++ +.|....+.+.+++...
T Consensus 51 --~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~- 123 (165)
T cd01120 51 --LKGALDNL----IIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA- 123 (165)
T ss_pred --hccccccE----EEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-
Confidence 00000000 01122223445566668889999999999999999995 44555556666655544
Q ss_pred hcCCcEEEEEccCHHHH
Q 022337 242 KKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 242 ~~~g~tii~itHd~~~~ 258 (298)
++.+.|+|+++|.....
T Consensus 124 ~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 124 RKGGVTVIFTLQVPSGD 140 (165)
T ss_pred hcCCceEEEEEecCCcc
Confidence 45699999999987544
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.33 E-value=9.2e-12 Score=106.83 Aligned_cols=83 Identities=20% Similarity=0.314 Sum_probs=66.1
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+..+..|-||-=---+.+.+ ++.-++|||||-|+|.|.-+-+++..|.++++. |.-+||+||.+=...-=.-+|+-++
T Consensus 125 ~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 125 RSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred cchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChhheeCCCcEEEEEe
Confidence 34456799997666666665 456899999999999999999999999999875 8999999999866543346788887
Q ss_pred CCEEE
Q 022337 270 NGEIV 274 (298)
Q Consensus 270 ~G~i~ 274 (298)
.+-+.
T Consensus 203 ~~g~~ 207 (233)
T COG3910 203 ESGIE 207 (233)
T ss_pred cCCcc
Confidence 77643
No 451
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.28 E-value=8.1e-12 Score=134.35 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=69.8
Q ss_pred cCCCCCCChhHHHHHHHHHHHcC----CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 189 NKTGGEISVGQAQRVALARTLAN----EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~~----~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
.+++..||||||++++||++|+. +|+++|||||+++||+.++..+.++|.++.+ +.++|+|||+...+ .+||+
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~~~-~~~d~ 1145 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSPMI-EYADR 1145 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHHHH-Hhcce
Confidence 34577999999999999999984 7899999999999999999999999999854 57899999998766 78999
Q ss_pred EEEEeC
Q 022337 265 VCLLVN 270 (298)
Q Consensus 265 v~vl~~ 270 (298)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 987754
No 452
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.25 E-value=9.4e-11 Score=104.93 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=92.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHh-cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH-hCcc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALN-RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR-YGPQ 163 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~-~~~~ 163 (298)
=+++|.++.|.|++|||||||...++ +..+ ..+. +.|+..+.. +..+.++.. ++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~-------------------~~y~~~e~~--~~~~~~~~~~~g~- 77 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKK-------------------VYVITTENT--SKSYLKQMESVKI- 77 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCE-------------------EEEEEcCCC--HHHHHHHHHHCCC-
Confidence 48999999999999999999998875 2222 1223 333332211 112222221 111
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC--CCCeEEEeCcCCC---CCHHHHHHHHHHHH
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN--EPEVLLLDEPTSA---LDPISTQNIEDVLV 238 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~--~p~illLDEPts~---LD~~~~~~~~~~l~ 238 (298)
...+......+..+.+. -......|.++++.+..++.++. +|+++++||||+. .|......+++.++
T Consensus 78 ----~~~~~~~~g~l~i~~~~----~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~ 149 (234)
T PRK06067 78 ----DISDFFLWGYLRIFPLN----TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAK 149 (234)
T ss_pred ----ChhHHHhCCCceEEecc----ccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHH
Confidence 10000000001111110 11223457788999999999997 9999999999954 55555566666676
Q ss_pred HHHhcCCcEEEEEccCHHH-------HHhhcCEEEEEeC
Q 022337 239 KLKKKHGMTIVMVSHSIKQ-------IQRIADVVCLLVN 270 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~~~-------~~~~~d~v~vl~~ 270 (298)
.+++ .|.|+++++|+... +..++|-++.|+.
T Consensus 150 ~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 150 NLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 6665 48999999997654 4566777777763
No 453
>PRK02224 chromosome segregation protein; Provisional
Probab=99.24 E-value=2e-11 Score=128.56 Aligned_cols=79 Identities=32% Similarity=0.453 Sum_probs=68.7
Q ss_pred CCCCCChhHHH------HHHHHHHHcCC-----C-CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCc-EEEEEccCHHH
Q 022337 191 TGGEISVGQAQ------RVALARTLANE-----P-EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGM-TIVMVSHSIKQ 257 (298)
Q Consensus 191 ~~~~LSgGqkQ------Rv~iAral~~~-----p-~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~-tii~itHd~~~ 257 (298)
.+..||||||| |+++|++++.+ | +++|+||||++||+..+..+.++|.++... |. +||+||||.+.
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~-~~~qviiish~~~~ 856 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRL-GVEQIVVVSHDDEL 856 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhc-CCCeEEEEECChHH
Confidence 46799999999 99999999863 3 679999999999999999999999998643 54 79999999998
Q ss_pred HHhhcCEEEEEeCC
Q 022337 258 IQRIADVVCLLVNG 271 (298)
Q Consensus 258 ~~~~~d~v~vl~~G 271 (298)
+. .||+++.|...
T Consensus 857 ~~-~ad~~~~~~~~ 869 (880)
T PRK02224 857 VG-AADDLVRVEKD 869 (880)
T ss_pred HH-hcCeeEEeecC
Confidence 85 69999999644
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.18 E-value=3e-09 Score=84.63 Aligned_cols=119 Identities=34% Similarity=0.486 Sum_probs=82.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCc-cEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPS-GTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK 167 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~-G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~ 167 (298)
++..+.|+||+|+||||+++.|+..+.... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 467899999999999999999999987655 4555555433221111000
Q ss_pred CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH-----HHHHHHh
Q 022337 168 KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED-----VLVKLKK 242 (298)
Q Consensus 168 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~-----~l~~l~~ 242 (298)
. ..........++++..+..+++|-..+|.++++||+..-.+......... .......
T Consensus 51 ----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (148)
T smart00382 51 ----------------L-IIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS 113 (148)
T ss_pred ----------------h-hhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh
Confidence 0 11223344677888888888888888899999999999999988877664 1222233
Q ss_pred cCCcEEEEEccC
Q 022337 243 KHGMTIVMVSHS 254 (298)
Q Consensus 243 ~~g~tii~itHd 254 (298)
..+..+|+++|.
T Consensus 114 ~~~~~~i~~~~~ 125 (148)
T smart00382 114 EKNLTVILTTND 125 (148)
T ss_pred cCCCEEEEEeCC
Confidence 347889999984
No 455
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=99.16 E-value=7.9e-11 Score=114.25 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=71.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC---CEeCCCCCHH---
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD---GRDITDLDVL--- 134 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~---g~~i~~~~~~--- 134 (298)
.+.++.+++++.|..+..+++.++ +|.+|++++|+||||||||||+++|+++.+|+.|.|.+. |+++..+...
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 346899999999977778999996 999999999999999999999999999999999999886 4555433222
Q ss_pred H-HhcceEEEeCCCC
Q 022337 135 S-LRRKVGMLFQIPA 148 (298)
Q Consensus 135 ~-~~~~ig~v~Q~~~ 148 (298)
. +++.+++++|...
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 1 2357999999764
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.14 E-value=6.3e-12 Score=124.20 Aligned_cols=158 Identities=20% Similarity=0.264 Sum_probs=105.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHH--hcCCCCCccEEEECCEeCCCCCHHHH---hcceEEEeCCCCCCcccHHHHhHh
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRAL--NRLWEPPSGTVFLDGRDITDLDVLSL---RRKVGMLFQIPALFEGTVVDNIRY 160 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l--~gl~~p~~G~I~i~g~~i~~~~~~~~---~~~ig~v~Q~~~l~~~tv~eni~~ 160 (298)
=+++|..+.|.||+|||||||..-. .|..++.+.-+++.... +..++ .+.+||-+++..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE----~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE----SPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 3789999999999999999999876 56666566667776542 23333 3456665553210 001111
Q ss_pred CccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH--HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHH
Q 022337 161 GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA--RTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA--ral~~~p~illLDEPts~LD~~~~~~~~~~l~ 238 (298)
... . ........++.++++ ++.++....+|+|++|||.|+ .+|...|+.. +..++.++++++
T Consensus 88 -~~~---~-~~~~~~~~~~~~~l~-~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~ 151 (484)
T TIGR02655 88 -LDA---S-PDPEGQDVVGGFDLS-ALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVA 151 (484)
T ss_pred -Eec---C-chhccccccccCCHH-HHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHH
Confidence 000 0 001111234555664 467777889999999999999 6666665543 567888999998
Q ss_pred HHHhcCCcEEEEEccCHHH---------HHhhcCEEEEEe
Q 022337 239 KLKKKHGMTIVMVSHSIKQ---------IQRIADVVCLLV 269 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~~~---------~~~~~d~v~vl~ 269 (298)
.+++ .|+|+|+++|+.+. ...+||.|+.|+
T Consensus 152 ~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 152 RLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 8865 59999999998764 256789999887
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.14 E-value=1.1e-10 Score=114.49 Aligned_cols=169 Identities=18% Similarity=0.268 Sum_probs=104.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
++++.++.+++|.+++++|||||||||++..|++.+.+.+|. ++|+++.+++ |..++.|++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQL 305 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQL 305 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHH
Confidence 566777888899999999999999999999999987665553 2578898887 556889999
Q ss_pred HhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHH-HHHHHHHHcCCC-----CeEEEeCcCCCCCHHHH
Q 022337 159 RYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQ-RVALARTLANEP-----EVLLLDEPTSALDPIST 230 (298)
Q Consensus 159 ~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ-Rv~iAral~~~p-----~illLDEPts~LD~~~~ 230 (298)
.+.....+.+. .....+......++.+ .....+.+...+|+- .+.-+.+++.++ .+|+||.++.+
T Consensus 306 r~~AeilGVpv~~~~~~~Dl~~aL~~L~d-~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------ 378 (484)
T PRK06995 306 RIYGKILGVPVHAVKDAADLRLALSELRN-KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------ 378 (484)
T ss_pred HHHHHHhCCCeeccCCchhHHHHHHhccC-CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------
Confidence 87544433221 1122223334445532 233345554434432 233444444444 68999999887
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccC---------HHHHHhhcCEEEEEeCCEEE
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSHS---------IKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itHd---------~~~~~~~~d~v~vl~~G~i~ 274 (298)
..+.+.++.+.. .+.+-++.|+- ++.+.++-=-|.++-.|+=+
T Consensus 379 ~~l~~i~~~f~~-~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 379 DTLNEVVQAYRG-PGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred HHHHHHHHHhcc-CCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 334445555543 36666666652 22333333447778888644
No 458
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=99.09 E-value=3.1e-10 Score=110.54 Aligned_cols=181 Identities=22% Similarity=0.283 Sum_probs=110.4
Q ss_pred eCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---H-----HHhcceEEEe
Q 022337 73 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV---L-----SLRRKVGMLF 144 (298)
Q Consensus 73 y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~---~-----~~~~~ig~v~ 144 (298)
|..+..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.+...|+.-.+... . .+++.+-++.
T Consensus 147 l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 147 LSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred ccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 33456799999 9999999999999999999999999999999999888776664333211 0 0112222322
Q ss_pred CCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCCh-hHHHHHHHHHHHcCCCCeEEEeCc--
Q 022337 145 QIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV-GQAQRVALARTLANEPEVLLLDEP-- 221 (298)
Q Consensus 145 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-GqkQRv~iAral~~~p~illLDEP-- 221 (298)
+... +..+-..-+. .--.+.+.+...|-+- + -...+|+- -|-+| .|+ +.+.||
T Consensus 226 ~~d~----~p~~r~~~~~-------~a~t~AE~frd~G~~V-l--l~~DslTr~A~A~R-Eis---------l~~ge~P~ 281 (440)
T TIGR01026 226 TSDQ----SPLLRLKGAY-------VATAIAEYFRDQGKDV-L--LLMDSVTRFAMAQR-EIG---------LAAGEPPA 281 (440)
T ss_pred CCCC----CHHHHHHHHH-------HHHHHHHHHHHCCCCE-E--EEEeChHHHHHHHH-HHH---------HhcCCCCc
Confidence 2111 1111111000 0001112222223210 0 00112221 11222 122 223564
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCc-------EEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGM-------TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~-------tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+.|.||.....+.+++.+.... +. ||++.+||+. ..+||++..+.+|+|+.+....+
T Consensus 282 ~~Gypp~~~~~l~~l~ERag~~-~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 282 TKGYTPSVFSTLPRLLERAGAS-GKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred ccccChhHHHHHHHHHHHhccC-CCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecchhh
Confidence 5689999999999999987643 67 8999999985 45799999999999998877654
No 459
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.08 E-value=5.5e-10 Score=97.79 Aligned_cols=119 Identities=23% Similarity=0.281 Sum_probs=73.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLT 170 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 170 (298)
++.|.||+||||||+++.|++.+.+. .|.|...+.++. +. .....+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~---~~~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FV---HESKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cc---ccCccceeeecc-----------------------
Confidence 68899999999999999998888644 567665443321 10 000111111100
Q ss_pred HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 022337 171 ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250 (298)
Q Consensus 171 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~ 250 (298)
++.+ ...++ =+++++|..+|+++++|||. |+.....+ ++ .+. .|..++.
T Consensus 56 ----------vg~~-------~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~-~a~-~G~~v~~ 104 (198)
T cd01131 56 ----------VGLD-------TLSFE------NALKAALRQDPDVILVGEMR---DLETIRLA---LT-AAE-TGHLVMS 104 (198)
T ss_pred ----------cCCC-------ccCHH------HHHHHHhcCCcCEEEEcCCC---CHHHHHHH---HH-HHH-cCCEEEE
Confidence 0100 01111 14889999999999999996 66543333 32 333 3889999
Q ss_pred EccCHHHHHhhcCEEEEEe
Q 022337 251 VSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 251 itHd~~~~~~~~d~v~vl~ 269 (298)
++|..+.. ...+|++.+.
T Consensus 105 t~Ha~~~~-~~~~Rl~~l~ 122 (198)
T cd01131 105 TLHTNSAA-KTIDRIIDVF 122 (198)
T ss_pred EecCCcHH-HHHhHHHhhc
Confidence 99998765 4568876553
No 460
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.07 E-value=2.8e-10 Score=102.29 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=41.7
Q ss_pred HHcCCCCeEEEeCcCCC------CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 208 TLANEPEVLLLDEPTSA------LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 208 al~~~p~illLDEPts~------LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
+...+|+++++| |+++ +|+.....+++.|.+++++.|.|||+++|...
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 346899999999 7754 79999999999999998877999999999874
No 461
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=6.6e-10 Score=106.13 Aligned_cols=63 Identities=32% Similarity=0.453 Sum_probs=57.4
Q ss_pred CCCChhHHHHHHHHHHHcC---------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 193 GEISVGQAQRVALARTLAN---------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral~~---------~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
..+|.||+|+++||.+|+. +|+|||||||+++||+..++.+++.|.+. |.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChhhcc
Confidence 3789999999999999999 99999999999999999999999998753 679999999987654
No 462
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.00 E-value=5.5e-10 Score=97.34 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=68.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccC--CCc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG--KKL 169 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~--~~~ 169 (298)
++||.||||||||||.++|.+++ ..|.+.+-+.| ....+.+..+........+. ...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999998 33444333332 11111111111111100000 111
Q ss_pred cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH
Q 022337 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228 (298)
Q Consensus 170 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~ 228 (298)
+.+...+.+..+... ...+.+..++|.|++++..+ .+.+|+++|+|+|+.+.++.
T Consensus 60 ~~~~~~~~l~~l~~~-~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLISHLQDLKNG-KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHHHHHHHHHCC-CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 233444566655553 24566778999999877655 57889999999999999873
No 463
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.99 E-value=3.9e-10 Score=109.27 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc---EEEECCEeCCCCCHHH------HhcceEEEeCC
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG---TVFLDGRDITDLDVLS------LRRKVGMLFQI 146 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G---~I~i~g~~i~~~~~~~------~~~~ig~v~Q~ 146 (298)
+..+++++ |++.+|++++|+|+||||||||+++|+|+.+|+.+ .|-.+|.++.++.... .+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45799999 99999999999999999999999999999999864 3334444443322111 13469999999
Q ss_pred CCCCc-ccHHHHhHhCc
Q 022337 147 PALFE-GTVVDNIRYGP 162 (298)
Q Consensus 147 ~~l~~-~tv~eni~~~~ 162 (298)
...+. .++.++..+..
T Consensus 221 ~s~~~rl~a~e~a~~iA 237 (434)
T PRK07196 221 ESPLMRIKATELCHAIA 237 (434)
T ss_pred CChhhhHHHHHHHHHHH
Confidence 98776 48888887543
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.98 E-value=1.3e-08 Score=107.01 Aligned_cols=69 Identities=28% Similarity=0.429 Sum_probs=55.7
Q ss_pred HHHHHcCCCCeEEEeCcCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh--hcCEEEEEeCCEEE
Q 022337 205 LARTLANEPEVLLLDEPTSAL-DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR--IADVVCLLVNGEIV 274 (298)
Q Consensus 205 iAral~~~p~illLDEPts~L-D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~--~~d~v~vl~~G~i~ 274 (298)
|++++..+|+++++|||+.+| |+..++.+.+.++.+.+. |.+++++||+++.+.. .++.++-..+.+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~-g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKA-NCLVLMATQSLSDAANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHhhCchHHHHHHcCCccee
Confidence 678889999999999999999 799999999999998765 8899999999998875 23333333344444
No 465
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.97 E-value=1.7e-10 Score=102.78 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=39.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHh-cCCCCCccEEEECCEeCCCCCHHH---HhcceEEEeCCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALN-RLWEPPSGTVFLDGRDITDLDVLS---LRRKVGMLFQIP 147 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~~p~~G~I~i~g~~i~~~~~~~---~~~~ig~v~Q~~ 147 (298)
=+++|+++.|.||+|||||||...++ ...++.++-+++.... +... ..+.+|+.+|+.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~----~~~~i~~~~~~~g~~~~~~ 77 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE----SRESIIRQAAQFGMDFEKA 77 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHhCCCHHHH
Confidence 48899999999999999999988654 2334555667776532 2222 234566666643
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.96 E-value=7.3e-10 Score=95.97 Aligned_cols=82 Identities=21% Similarity=0.160 Sum_probs=61.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCC--CCc-ccHH
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA--LFE-GTVV 155 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~--l~~-~tv~ 155 (298)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... ..+..+++++|... .++ .+..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL---PHPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC---CCCCEEEEEEecCCCCCCCccCHH
Confidence 44556678999999999999999999999999999999999999976432221 12345777776553 334 4888
Q ss_pred HHhHhCcc
Q 022337 156 DNIRYGPQ 163 (298)
Q Consensus 156 eni~~~~~ 163 (298)
+.+...++
T Consensus 91 ~~l~~~lR 98 (186)
T cd01130 91 DLLRSALR 98 (186)
T ss_pred HHHHHHhc
Confidence 88876554
No 467
>PRK14079 recF recombination protein F; Provisional
Probab=98.89 E-value=3.7e-09 Score=100.47 Aligned_cols=77 Identities=30% Similarity=0.286 Sum_probs=62.9
Q ss_pred CCCChhHHHHHHHHHHHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 193 GEISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
..+|+||++++++|+.|+ .+|+++|||||+++||+..+..+.+.|.... .++|-.|+ ....||
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~it~t~----~~~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAIVAGTE----APPGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEEEEcCC----CCCCCc
Confidence 368999999999999999 8999999999999999999999999886532 24444443 335799
Q ss_pred EEEEEeCCEEEEee
Q 022337 264 VVCLLVNGEIVEVL 277 (298)
Q Consensus 264 ~v~vl~~G~i~~~g 277 (298)
+++.+.+|++....
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999999876443
No 468
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.88 E-value=6.4e-09 Score=110.13 Aligned_cols=80 Identities=28% Similarity=0.351 Sum_probs=68.6
Q ss_pred CCCCCCChhHHHHHHHHHHH------cCC--CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 190 KTGGEISVGQAQRVALARTL------ANE--PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral------~~~--p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
+.+.+|||||+=.++||-+| ..+ -++++|||||..||+.+.+.+++.|..+... +.+|+||||+-++. ..
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~eel~-e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVEELK-ER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChHHHH-Hh
Confidence 57889999999877776665 456 6999999999999999999999999999765 89999999998766 56
Q ss_pred cCEEEEEeCC
Q 022337 262 ADVVCLLVNG 271 (298)
Q Consensus 262 ~d~v~vl~~G 271 (298)
+|.++.++..
T Consensus 889 ~~~~i~V~k~ 898 (908)
T COG0419 889 ADVRIRVKKD 898 (908)
T ss_pred CCeEEEEEec
Confidence 8998888653
No 469
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.86 E-value=3.8e-09 Score=115.61 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=56.1
Q ss_pred hcCCCCCCChhHHHHHH----HHHH--------HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 188 LNKTGGEISVGQAQRVA----LART--------LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~----iAra--------l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
.++..+.||||||||++ +|++ +..+|++++|||||++||+.++..+++++.++ |.++||+||++
T Consensus 1241 ~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1241 LTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred hhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 34457899999999996 5755 55899999999999999999999999999887 68899999985
No 470
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.86 E-value=2.4e-09 Score=104.12 Aligned_cols=171 Identities=20% Similarity=0.254 Sum_probs=104.3
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECC---EeCCCCCHHHHh---cceEEE-----
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDG---RDITDLDVLSLR---RKVGML----- 143 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g---~~i~~~~~~~~~---~~ig~v----- 143 (298)
+..+++++ |++.+|+.++|+|+||||||||+++|+|+.++ +.|.|.+.| +++.++....++ .+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 34589888 99999999999999999999999999999854 446676644 555443322222 345566
Q ss_pred eCCCC--CCc----ccHHHHhHhCcccc-CCCccHHHHHHHHHHcCCC----chhhcCCCCCCChhHHHHHHHHHHHcCC
Q 022337 144 FQIPA--LFE----GTVVDNIRYGPQLR-GKKLTENEVYKLLSLADLD----SSFLNKTGGEISVGQAQRVALARTLANE 212 (298)
Q Consensus 144 ~Q~~~--l~~----~tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgGqkQRv~iAral~~~ 212 (298)
+|+|. +-+ .++.|.+...-... -...+..++.++++.+++. +.....+|+.||. ++|-+=+-
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~-------l~~llERa 302 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST-------LPKLLERS 302 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH-------hHHHHHHh
Confidence 89874 222 25566665321100 0123456788999999983 3456778888773 22211000
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
-+. + + .-|-.+ -||.+..+|+++. ++|.+.-+-||+|+.+..
T Consensus 303 g~~----~---~----------GSITai-----~tVl~~gdD~~dp--i~d~~~~i~dg~ivLsr~ 344 (442)
T PRK06315 303 GAS----D---K----------GTITAF-----YTVLVAGDDMNEP--VADEVKSILDGHIVLSNA 344 (442)
T ss_pred cCC----C---C----------cceeee-----EEEEecCCCCCcc--cHHHhhhhcceEEEEecc
Confidence 000 0 0 001101 2456666777654 678888888899886644
No 471
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.81 E-value=4.9e-09 Score=90.25 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh-cceEEEeCCCCCCc-ccHHHHhHhC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR-RKVGMLFQIPALFE-GTVVDNIRYG 161 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~-~~ig~v~Q~~~l~~-~tv~eni~~~ 161 (298)
+||+++|+|+||||||||+++|+|++.| +.++|.++... ...+ ...|+.+|+...++ .++..|+.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999999987 68899887532 2222 24677777755444 3677777654
No 472
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.80 E-value=2.6e-08 Score=108.05 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=83.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHh
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRY 160 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~ 160 (298)
=+++..+++++++|+|++|+|||||++.+.+-+ ...+|.+++++..+.. .. .. +-.+++..+ +...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~-~~----~~--~~~~~~~~~------~~~~ 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK-SM----EI--YSSANPDDY------NMKL 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc-ch----hh--ccccccccc------chhH
Confidence 356788899999999999999999999995544 4568999987633221 00 00 001111100 0000
Q ss_pred CccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHH
Q 022337 161 GPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l 240 (298)
. ...+.+.++++..++. ...+ ++.++| |..++-+|+||+- |.. ..++.+...
T Consensus 266 ~-------l~~~~l~~il~~~~~~-------~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~ 317 (1153)
T PLN03210 266 H-------LQRAFLSEILDKKDIK-------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQ 317 (1153)
T ss_pred H-------HHHHHHHHHhCCCCcc-------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhh
Confidence 0 0012233333333331 1122 555665 3466678888984 332 334444433
Q ss_pred Hh--cCCcEEEEEccCHHHHHhh-cCEEEEEe
Q 022337 241 KK--KHGMTIVMVSHSIKQIQRI-ADVVCLLV 269 (298)
Q Consensus 241 ~~--~~g~tii~itHd~~~~~~~-~d~v~vl~ 269 (298)
.+ ..|.+||++|||...+... +|+++.+.
T Consensus 318 ~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 318 TQWFGSGSRIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred CccCCCCcEEEEEeCcHHHHHhcCCCeEEEec
Confidence 21 2488999999999988654 67776653
No 473
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.79 E-value=4.1e-08 Score=103.17 Aligned_cols=138 Identities=22% Similarity=0.252 Sum_probs=86.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
..|-+|+++. +.+.++.|.|||++||||+||.++-.. -.+-| .|||-...- .++.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G---------------------~~VPa~~a~--i~~~ 650 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG---------------------SFVPAESAR--IGIV 650 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC---------------------CceeccceE--eccc
Confidence 3566788887 677899999999999999999987532 11111 233322110 0111
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC--CCCeEEEeCc---CCCCCHHHH
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN--EPEVLLLDEP---TSALDPIST 230 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~--~p~illLDEP---ts~LD~~~~ 230 (298)
|.| ..++|-.+ .....+|--+.....++++|-+ ++.++|+||| |+.+|..+
T Consensus 651 d~I-------------------~triga~d----~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a- 706 (854)
T PRK05399 651 DRI-------------------FTRIGASD----DLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS- 706 (854)
T ss_pred Cee-------------------eeccCccc----ccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH-
Confidence 111 11223221 2233567766777777777655 8999999999 88888544
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
.....+..+.+..+.+++++||+.+ +..++++
T Consensus 707 -ia~aile~l~~~~~~~~l~aTH~~e-l~~l~~~ 738 (854)
T PRK05399 707 -IAWAVAEYLHDKIGAKTLFATHYHE-LTELEEK 738 (854)
T ss_pred -HHHHHHHHHHhcCCceEEEEechHH-HHHHhhh
Confidence 4555555555544689999999955 4467765
No 474
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.78 E-value=6.4e-09 Score=89.95 Aligned_cols=55 Identities=29% Similarity=0.382 Sum_probs=45.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~ 147 (298)
|++++|+||||||||||+++|++...| .+.+.+..+........+..+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888888776544444556788888875
No 475
>PRK08149 ATP synthase SpaL; Validated
Probab=98.78 E-value=8.9e-09 Score=99.73 Aligned_cols=73 Identities=25% Similarity=0.400 Sum_probs=61.0
Q ss_pred CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc---cEEEECCEeCCCCCHHHH----hcceEEEeCCC
Q 022337 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS---GTVFLDGRDITDLDVLSL----RRKVGMLFQIP 147 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~---G~I~i~g~~i~~~~~~~~----~~~ig~v~Q~~ 147 (298)
.+..+++++ +++.+|++++|+|+||+|||||+++|++...++. |.|..+|+++..+..... ++++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 355799999 9999999999999999999999999999999987 999999998865433322 35788888765
Q ss_pred C
Q 022337 148 A 148 (298)
Q Consensus 148 ~ 148 (298)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 3
No 476
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.74 E-value=6.3e-08 Score=79.99 Aligned_cols=138 Identities=15% Similarity=0.162 Sum_probs=77.0
Q ss_pred EEEEcCCCccHHHHHHHHh--cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCC-CCC-C----------------c-
Q 022337 93 MGIIGPSGSGKSTLLRALN--RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQI-PAL-F----------------E- 151 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~--gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~-~~l-~----------------~- 151 (298)
++++|++|||||||++.|. +...+.+|++... ....... ... .+++-+ |.+ + .
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t-~~~~~~~---~~~--~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~ 75 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKT-QLINFFN---VND--KFRLVDLPGYGYAKVSKEVKEKWGKLIEEY 75 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcc-eeEEEEE---ccC--eEEEecCCCccccccCHHHHHHHHHHHHHH
Confidence 6899999999999999999 7777777664221 1110000 000 111111 110 0 0
Q ss_pred ccHHHHhHhCccc--cCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH-----HcCCCCeEEEeCcC
Q 022337 152 GTVVDNIRYGPQL--RGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART-----LANEPEVLLLDEPT 222 (298)
Q Consensus 152 ~tv~eni~~~~~~--~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra-----l~~~p~illLDEPt 222 (298)
.+..+|+...... ... .....++.+.+...+.+--+...+...+|++++++...... ....|+++ |+
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~ 151 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LF 151 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EE
Confidence 0122232221111 011 11223455666666643223344566789998887765554 24456666 99
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 022337 223 SALDPISTQNIEDVLVKL 240 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l 240 (298)
|++|+....++++.|.++
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 477
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.72 E-value=5.8e-08 Score=98.66 Aligned_cols=111 Identities=23% Similarity=0.227 Sum_probs=76.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--------EEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--------TVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR 159 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--------~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~ 159 (298)
...+.++|+||||+|||||++++.++.++..| -|.++|..+. ++...+ .+..
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~l 232 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPL 232 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHh
Confidence 34567999999999999999999999875444 4666665442 121111 1112
Q ss_pred hCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHH
Q 022337 160 YGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 239 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~ 239 (298)
++.. .......+.+.++..|+. ......+.++||| +|++|| +..||+..+..+++.+.+
T Consensus 233 lg~~---~~~~~~~a~~~l~~~gl~-~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 233 LGSV---HDPIYQGARRDLAETGVP-EPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred cCCc---cHHHHHHHHHHHHHcCCC-chhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 2210 001122345567788886 4667788899999 999999 799999999999999875
No 478
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.71 E-value=2.5e-08 Score=97.90 Aligned_cols=137 Identities=21% Similarity=0.313 Sum_probs=85.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccE-EEECCEeCCCCCHHHHh---cceEEEeCCCCCCcccHHHHhHhC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-VFLDGRDITDLDVLSLR---RKVGMLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~-I~i~g~~i~~~~~~~~~---~~ig~v~Q~~~l~~~tv~eni~~~ 161 (298)
=+.+|+++.|.|++|+|||||+..++.......+. +++.+++- ...++ +++++.++ |+.+.
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs----~~qi~~ra~rlg~~~~-----------~l~~~ 154 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES----LQQIKMRAIRLGLPEP-----------NLYVL 154 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC----HHHHHHHHHHcCCChH-----------HeEEc
Confidence 48999999999999999999999998766544444 46666532 22211 22332111 11110
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC---------CHHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL---------DPISTQN 232 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L---------D~~~~~~ 232 (298)
. +.+-. +-...+ --.+|+++++|.-++=. +....++
T Consensus 155 ~-------------------------------e~~~~--~I~~~i--~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~ 199 (454)
T TIGR00416 155 S-------------------------------ETNWE--QICANI--EEENPQACVIDSIQTLYSPDISSAPGSVSQVRE 199 (454)
T ss_pred C-------------------------------CCCHH--HHHHHH--HhcCCcEEEEecchhhcccccccCCCCHHHHHH
Confidence 0 00000 000011 12478999999765421 1334566
Q ss_pred HHHHHHHHHhcCCcEEEEEccCHHH--------HHhhcCEEEEEeCCE
Q 022337 233 IEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLVNGE 272 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~itHd~~~--------~~~~~d~v~vl~~G~ 272 (298)
+...|.+++++.|.|+++++|.... +..++|.|+.|+.++
T Consensus 200 ~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 200 CTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred HHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 6777888888889999999996543 677899999998654
No 479
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.71 E-value=5.6e-07 Score=94.27 Aligned_cols=52 Identities=25% Similarity=0.504 Sum_probs=45.4
Q ss_pred HHcCCCCeEEEeCcCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHh
Q 022337 208 TLANEPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR 260 (298)
Q Consensus 208 al~~~p~illLDEPts~LD-~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~ 260 (298)
.+..+|.++++|||...|| +...+.+.+.++++.+. |..++++||+++.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKL-NTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHh
Confidence 4567899999999999999 88899999999998754 8899999999987543
No 480
>PRK01889 GTPase RsgA; Reviewed
Probab=98.70 E-value=1.3e-08 Score=96.95 Aligned_cols=80 Identities=23% Similarity=0.188 Sum_probs=63.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
-++.+.-.+.+|++++|+|+||+|||||++.|+|...|+.|+|.+++..-.. ...++.+++++|+..+++.+...++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566666788999999999999999999999999999999999998754221 1235679999998888876666666
Q ss_pred HhC
Q 022337 159 RYG 161 (298)
Q Consensus 159 ~~~ 161 (298)
.+.
T Consensus 261 ~l~ 263 (356)
T PRK01889 261 QLW 263 (356)
T ss_pred ccc
Confidence 543
No 481
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.69 E-value=2.9e-08 Score=86.68 Aligned_cols=49 Identities=35% Similarity=0.538 Sum_probs=40.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC------------CCccEEEECCEeCCCCCHHHHhc
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE------------PPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++...+..++++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~ 63 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEE 63 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHH
Confidence 5899999999999999999999999985 77788 5787776555554443
No 482
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.68 E-value=2.2e-08 Score=86.20 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCchhhcCCCCCCChhHHHHHH--HHHHHcC-CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhc
Q 022337 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVA--LARTLAN-EPEVLLLDEPTSALDPISTQNIEDVLVKLKKK 243 (298)
Q Consensus 173 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~--iAral~~-~p~illLDEPts~LD~~~~~~~~~~l~~l~~~ 243 (298)
++.+.++..++.--+...++..+|+|++|++. +++.+-. +++++ |+|++|+.+.+++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 35556666666423445567789999999987 6666644 34443 99999999999999999987653
No 483
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.67 E-value=1.2e-08 Score=89.77 Aligned_cols=63 Identities=32% Similarity=0.440 Sum_probs=40.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE 151 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~ 151 (298)
++|++++|+||||||||||++.|++++++ ..+.+..|+.-. .......+.+.++.+|.+..++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~ 67 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK-DQSHLEMAERKKTNFDHPDAFD 67 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc-ChhhCCHHHhcCCCCCCccHhH
Confidence 67999999999999999999999999876 222333333211 1111112344666677665444
No 484
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.67 E-value=2e-08 Score=95.67 Aligned_cols=115 Identities=22% Similarity=0.227 Sum_probs=70.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC--Cc-cEEEECCEeCCCCCHHHHhcceEEEeCCCC-----CCcccHHHHhH
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP--PS-GTVFLDGRDITDLDVLSLRRKVGMLFQIPA-----LFEGTVVDNIR 159 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~-G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~-----l~~~tv~eni~ 159 (298)
++|..++|+||+||||||+++.|++.+.+ .. +.|.....++ ++....++...+++.|... -|...+++.+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48899999999999999999999999853 33 4565544444 3444444455678888642 23346677666
Q ss_pred hCccc--cCCCccHHHHHHHHHHcCCC------------chhhcCCCCCCChhHHHHH
Q 022337 160 YGPQL--RGKKLTENEVYKLLSLADLD------------SSFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 160 ~~~~~--~~~~~~~~~~~~~l~~~~l~------------~~~~~~~~~~LSgGqkQRv 203 (298)
..+.. .+.-.+.+.+..+++...-. .....+....+|+||+--+
T Consensus 211 ~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~ 268 (358)
T TIGR02524 211 RKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR 268 (358)
T ss_pred cCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence 55432 12222344455566653210 1234555667888887544
No 485
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.67 E-value=5e-08 Score=84.43 Aligned_cols=132 Identities=20% Similarity=0.301 Sum_probs=93.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccH
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE 171 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 171 (298)
+++|+|..||||||+.+.+.-.. |-..++- ..+...+.-. ..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~----~~~~i~~--------------------------D~~~~~~~~~--------~~ 42 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY----HFPVIDA--------------------------DKIAHQVVEK--------GS 42 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc----CCeEEeC--------------------------CHHHHHHHhc--------CC
Confidence 47999999999999999998653 1112211 1111111110 01
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~i 251 (298)
+-..++.+.+|- .+.+. .|+-+|..||.++..+|+.+..+| +.+||...+++.+.+.+..+ .|.+|++.
T Consensus 43 ~~~~~i~~~fg~--~i~~~------~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~-~~~~vvi~ 111 (188)
T TIGR00152 43 PAYEKIVDHFGA--QILNE------DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQS-KLAYVLLD 111 (188)
T ss_pred hHHHHHHHHHCH--HHhCC------CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhc-CCCEEEEE
Confidence 112344555663 23321 388999999999999999988887 78999999999999988754 36799999
Q ss_pred ccCHHH--HHhhcCEEEEEeCCE
Q 022337 252 SHSIKQ--IQRIADVVCLLVNGE 272 (298)
Q Consensus 252 tHd~~~--~~~~~d~v~vl~~G~ 272 (298)
+|.+.+ +..+||++++++.+.
T Consensus 112 ~pll~e~~~~~~~D~vv~V~~~~ 134 (188)
T TIGR00152 112 VPLLFENKLRSLCDRVIVVDVSP 134 (188)
T ss_pred chHhhhCCcHHhCCEEEEEECCH
Confidence 999954 778899999998764
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.65 E-value=2.4e-07 Score=87.85 Aligned_cols=114 Identities=24% Similarity=0.264 Sum_probs=70.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
..++..+.|.||+||||||+++.+.+.+. +.+|.|...+.++.- . .....+++.|.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~-~---~~~~~~~i~q~------------------- 175 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY-V---HRNKRSLINQR------------------- 175 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh-h---ccCccceEEcc-------------------
Confidence 35688999999999999999999998765 446777654433210 0 00000000000
Q ss_pred CCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCC
Q 022337 166 GKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHG 245 (298)
Q Consensus 166 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g 245 (298)
..+.. . .+ -.-++++||-.+|+++++||+. |+.+....++. +. .|
T Consensus 176 --------------evg~~-------~--~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a~-tG 220 (343)
T TIGR01420 176 --------------EVGLD-------T--LS----FANALRAALREDPDVILIGEMR---DLETVELALTA----AE-TG 220 (343)
T ss_pred --------------ccCCC-------C--cC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----HH-cC
Confidence 01110 0 01 1224678899999999999997 88877654442 23 38
Q ss_pred cEEEEEccCHHHH
Q 022337 246 MTIVMVSHSIKQI 258 (298)
Q Consensus 246 ~tii~itHd~~~~ 258 (298)
.+++.+.|..+..
T Consensus 221 h~v~~T~Ha~~~~ 233 (343)
T TIGR01420 221 HLVFGTLHTNSAA 233 (343)
T ss_pred CcEEEEEcCCCHH
Confidence 8999999985433
No 487
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.65 E-value=2.6e-08 Score=96.63 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=58.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
.++.++++..+..+..+++++ |++.+|+.++|+|+||+|||||+++|+|+.+|+.|.+.+.|+.-
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg 193 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG 193 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence 477888888886677899999 99999999999999999999999999999999999888877643
No 488
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.63 E-value=8.7e-08 Score=91.74 Aligned_cols=137 Identities=19% Similarity=0.349 Sum_probs=84.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECCEeCCCCCHHHHh---cceEEEeCCCCCCcccHHHHhHhC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDGRDITDLDVLSLR---RKVGMLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g~~i~~~~~~~~~---~~ig~v~Q~~~l~~~tv~eni~~~ 161 (298)
=+.+|+++.|.|++|+|||||+..++.......+.+ ++.+++ +...++ +++++.+++ +.+.
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE----s~~qi~~Ra~rlg~~~~~-----------l~l~ 142 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE----SPEQIKLRADRLGISTEN-----------LYLL 142 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc----CHHHHHHHHHHcCCCccc-----------EEEE
Confidence 388999999999999999999999988776655666 445543 111111 223322211 1100
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC----CCC-----HHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS----ALD-----PISTQN 232 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts----~LD-----~~~~~~ 232 (298)
. ... ++++++ ..--.+|+++++|+-.+ .+| ....++
T Consensus 143 ~-----e~~---le~I~~---------------------------~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~ 187 (372)
T cd01121 143 A-----ETN---LEDILA---------------------------SIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRE 187 (372)
T ss_pred c-----cCc---HHHHHH---------------------------HHHhcCCcEEEEcchHHhhccccccCCCCHHHHHH
Confidence 0 000 111110 01125899999999632 232 234456
Q ss_pred HHHHHHHHHhcCCcEEEEEccCHH--------HHHhhcCEEEEEeCCE
Q 022337 233 IEDVLVKLKKKHGMTIVMVSHSIK--------QIQRIADVVCLLVNGE 272 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~itHd~~--------~~~~~~d~v~vl~~G~ 272 (298)
+...|.+++++.+.|++++.|-.. .++.++|.|+.++..+
T Consensus 188 ~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~~ 235 (372)
T cd01121 188 CTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 235 (372)
T ss_pred HHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcCC
Confidence 667778888888999999988432 3678899999987543
No 489
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.61 E-value=6.3e-08 Score=90.92 Aligned_cols=58 Identities=29% Similarity=0.424 Sum_probs=50.6
Q ss_pred EEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe
Q 022337 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD 127 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~ 127 (298)
++..|..+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.+..-|++
T Consensus 49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence 444555567899999 9999999999999999999999999999999999988876654
No 490
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.59 E-value=5.4e-08 Score=91.36 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=56.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC------HHHHhcceEEEeCCCCCCcc-cHHHHhHh
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD------VLSLRRKVGMLFQIPALFEG-TVVDNIRY 160 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~------~~~~~~~ig~v~Q~~~l~~~-tv~eni~~ 160 (298)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|..+.. ....+..+.+++|.....+. ++++++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 579999999999999999999999999998899999887764321 11235568999986554443 56676653
No 491
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.59 E-value=1.5e-07 Score=80.40 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=44.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE-----------CCEeCCCCCHHHH-----hcceEEEeCCCCCCcc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL-----------DGRDITDLDVLSL-----RRKVGMLFQIPALFEG 152 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i-----------~g~~i~~~~~~~~-----~~~ig~v~Q~~~l~~~ 152 (298)
|++++|+||||||||||++.|++.+.+. |.+.+ +|.+....+..++ .+.++.++|.+..+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 4555444443333 2348888887765543
No 492
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.58 E-value=4.6e-08 Score=96.83 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=57.1
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
+.|+++.| +...+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+++..+.
T Consensus 187 ~~d~~~v~-Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVI-GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEE-CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888 4567999999999999999999999999999999999999999999999877664
No 493
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.58 E-value=1.1e-07 Score=91.20 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=49.7
Q ss_pred eEEEEeEEEEeCCCCccee-----------eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 63 KFRVRELRKESDDGAPILK-----------GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~-----------~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.++++||++.|++++.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+..
T Consensus 130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 5899999999987677897 99999999999999999999999999999998753
No 494
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.58 E-value=6.8e-07 Score=81.44 Aligned_cols=177 Identities=21% Similarity=0.218 Sum_probs=97.8
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcce-EEEeCCCCCCcccH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKV-GMLFQIPALFEGTV 154 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~i-g~v~Q~~~l~~~tv 154 (298)
.+.|+++.--+.+|+++.|.|++|+|||||+..++.-.-.. ...|.+-.-+ .+..++.+++ +.....+.....+
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E---~~~~~~~~r~~~~~~~~~~~~~~~- 92 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE---EPVVRTARRLLGQYAGKRLHLPDT- 92 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc---cCHHHHHHHHHHHHhCCCcccCCc-
Confidence 35688887789999999999999999999998876544323 2244332221 1222222111 1100000000000
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcC-CCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCHH---
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLAD-LDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDPI--- 228 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~~--- 228 (298)
......+++.++++.+. ...-+........+ ....+..++.++ .+|+++++|..+.-.+..
T Consensus 93 -----------~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~ 159 (271)
T cd01122 93 -----------VFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERAS 159 (271)
T ss_pred -----------cccccHHHHHHHHHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCc
Confidence 00112334444444332 11001111122222 234445555554 479999999977654331
Q ss_pred -----HHHHHHHHHHHHHhcCCcEEEEEccCHH----------------------HHHhhcCEEEEEeC
Q 022337 229 -----STQNIEDVLVKLKKKHGMTIVMVSHSIK----------------------QIQRIADVVCLLVN 270 (298)
Q Consensus 229 -----~~~~~~~~l~~l~~~~g~tii~itHd~~----------------------~~~~~~d~v~vl~~ 270 (298)
....++..|++++++.++|+++++|--. .+...||-|+.|+.
T Consensus 160 ~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r 228 (271)
T cd01122 160 GDERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALER 228 (271)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEe
Confidence 2346667788888888999999998321 46678899988863
No 495
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.55 E-value=8e-07 Score=71.31 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh----cCCcEEEEEccCHH
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKK----KHGMTIVMVSHSIK 256 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~----~~g~tii~itHd~~ 256 (298)
.+......+...++.++++||.-.. ++.....+.+.+..... ..+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5666667777889999999998775 66677788888887643 24788999998754
No 496
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.53 E-value=1.6e-07 Score=91.33 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=61.5
Q ss_pred EEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH--HHH----hcceEE
Q 022337 69 LRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV--LSL----RRKVGM 142 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~--~~~----~~~ig~ 142 (298)
++..+..+..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.+...|++-.+... +.. ....++
T Consensus 125 i~~~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tv 203 (422)
T TIGR02546 125 IDQPLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSV 203 (422)
T ss_pred cccccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceE
Confidence 333444456799999 9999999999999999999999999999999999999886654333211 011 123577
Q ss_pred EeCCCCCCc
Q 022337 143 LFQIPALFE 151 (298)
Q Consensus 143 v~Q~~~l~~ 151 (298)
+++++..++
T Consensus 204 vv~~~s~~p 212 (422)
T TIGR02546 204 LVVSTSDRP 212 (422)
T ss_pred EEeccccCC
Confidence 888776554
No 497
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.52 E-value=1.9e-07 Score=83.15 Aligned_cols=133 Identities=22% Similarity=0.338 Sum_probs=75.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcC-CCCC------ccEEEECCEeCCCCCHHHHh---cceEEEeCCCCCCcccHHH
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRL-WEPP------SGTVFLDGRDITDLDVLSLR---RKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl-~~p~------~G~I~i~g~~i~~~~~~~~~---~~ig~v~Q~~~l~~~tv~e 156 (298)
+++|+++.|.||+|||||||+..++.. ..|. .+-++++.++- .+...+. +..++ ....+.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~--~~~~rl~~~~~~~~~-------~~~~~~~ 86 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT--FRPERLVQIAERFGL-------DPEEVLD 86 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC--cCHHHHHHHHHHhcc-------ChHhHhc
Confidence 789999999999999999999988743 3343 67788877652 2222221 12222 1123444
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC----CH----H
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL----DP----I 228 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L----D~----~ 228 (298)
++.+... .+.+...+.++.+. ....+. .+|+++++|--++-. +. .
T Consensus 87 ~i~~~~~-----~~~~~l~~~l~~l~---~~l~~~-------------------~~~~liVIDSis~~~~~~~~~~~~~~ 139 (235)
T cd01123 87 NIYVARA-----YNSDHQLQLLEELE---AILIES-------------------SRIKLVIVDSVTALFRAEFDGRGELA 139 (235)
T ss_pred CEEEEec-----CCHHHHHHHHHHHH---HHHhhc-------------------CCeeEEEEeCcHHHHHHHhcCCccHH
Confidence 4433210 11122222222110 011000 178999999887621 11 1
Q ss_pred HH----HHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 229 ST----QNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 229 ~~----~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
.+ .++...|++++++.+.+||++.|-.
T Consensus 140 ~r~~~l~~~~~~L~~la~~~~~avl~tn~~~ 170 (235)
T cd01123 140 ERQQHLAKLLRTLKRLADEFNVAVVITNQVT 170 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCEEEEeccEe
Confidence 12 3556677777777899999998753
No 498
>PTZ00035 Rad51 protein; Provisional
Probab=98.51 E-value=5.7e-07 Score=85.10 Aligned_cols=135 Identities=21% Similarity=0.317 Sum_probs=82.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCC-C-----CccEE-EECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWE-P-----PSGTV-FLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p-----~~G~I-~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
=|++|+++.|.||||||||||...++.... | ..|.+ +|+++.. +++++ +..++|.+.+.+.++.+|+
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~--f~~er----i~~ia~~~g~~~~~~l~nI 187 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT--FRPER----IVQIAERFGLDPEDVLDNI 187 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC--CCHHH----HHHHHHHhCCChHhHhhce
Confidence 488999999999999999999999987555 4 45666 7777653 23322 3344555555555777887
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH-cCCCCeEEEeCcCCCCC--------HHH
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL-ANEPEVLLLDEPTSALD--------PIS 229 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral-~~~p~illLDEPts~LD--------~~~ 229 (298)
.+... .+.+...+.+.. ++..+ -.++++++.|=-++-.- ...
T Consensus 188 ~~~~~-----~~~e~~~~~l~~------------------------~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~ 238 (337)
T PTZ00035 188 AYARA-----YNHEHQMQLLSQ------------------------AAAKMAEERFALLIVDSATALFRVDYSGRGELAE 238 (337)
T ss_pred EEEcc-----CCHHHHHHHHHH------------------------HHHHhhccCccEEEEECcHHhhhhhccCcccHHH
Confidence 65421 111222222211 00001 13678999998776321 222
Q ss_pred H----HHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 230 T----QNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 230 ~----~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
+ .+++..|++++++.+.|+|++-|-.
T Consensus 239 r~~~l~~~~~~L~~la~~~~vavvvtNqv~ 268 (337)
T PTZ00035 239 RQQHLGKFLRALQKLADEFNVAVVITNQVM 268 (337)
T ss_pred HHHHHHHHHHHHHHHHHHcCcEEEEecceE
Confidence 2 2355667777777899999887643
No 499
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.51 E-value=9.8e-08 Score=85.30 Aligned_cols=55 Identities=33% Similarity=0.475 Sum_probs=40.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccE----EEECCEeCCCCCHHHHhcceEEEeCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT----VFLDGRDITDLDVLSLRRKVGMLFQI 146 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~----I~i~g~~i~~~~~~~~~~~ig~v~Q~ 146 (298)
.+..++||.||||||||||++.|++++++++|. |.+|+... +. ..+...|++++.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~~-~~~~~~g~~~~~ 89 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---DN-AVLDAHGLRPRK 89 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---CH-HHHHhccccccc
Confidence 457799999999999999999999999999998 44444221 21 223345776653
No 500
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.50 E-value=1.1e-06 Score=92.21 Aligned_cols=51 Identities=27% Similarity=0.550 Sum_probs=44.0
Q ss_pred HHcCCCCeEEEeCcCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 208 TLANEPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 208 al~~~p~illLDEPts~LD-~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
.+-.+|+++++|||+.+|| +..++.+.+.++.+.+. |.+++++||+++.+.
T Consensus 631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~-~~~~i~~TQ~~~d~~ 682 (811)
T PRK13873 631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKK-NVSVIFATQSLADID 682 (811)
T ss_pred HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHh
Confidence 3456899999999999999 78899999999998764 889999999998654
Done!