Query 022337
Match_columns 298
No_of_seqs 318 out of 1899
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 03:51:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 4.1E-63 1.4E-67 468.2 28.5 234 60-294 21-264 (366)
2 3gfo_A Cobalt import ATP-bindi 100.0 7.9E-63 2.7E-67 451.3 24.1 223 61-284 5-233 (275)
3 4g1u_C Hemin import ATP-bindin 100.0 7.7E-62 2.6E-66 442.8 29.2 222 61-284 9-237 (266)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-61 3.8E-66 457.8 29.2 221 62-284 3-228 (359)
5 3tif_A Uncharacterized ABC tra 100.0 5.6E-62 1.9E-66 436.1 24.9 220 63-283 1-233 (235)
6 3rlf_A Maltose/maltodextrin im 100.0 1.6E-61 5.4E-66 459.8 28.0 228 63-294 3-234 (381)
7 2olj_A Amino acid ABC transpor 100.0 9.8E-61 3.4E-65 434.9 29.8 230 62-294 23-259 (263)
8 1b0u_A Histidine permease; ABC 100.0 1.6E-60 5.6E-65 433.2 28.8 220 62-284 5-242 (262)
9 1ji0_A ABC transporter; ATP bi 100.0 1.7E-60 5.9E-65 427.7 28.1 221 61-284 4-228 (240)
10 1z47_A CYSA, putative ABC-tran 100.0 1.4E-60 4.7E-65 450.1 28.7 233 59-294 10-246 (355)
11 3nh6_A ATP-binding cassette SU 100.0 2E-60 6.8E-65 441.3 29.2 222 61-289 51-282 (306)
12 2pcj_A ABC transporter, lipopr 100.0 1.5E-60 5.1E-65 423.9 26.5 213 62-278 3-222 (224)
13 1g6h_A High-affinity branched- 100.0 9.2E-61 3.2E-65 433.5 24.7 218 61-281 5-239 (257)
14 2yyz_A Sugar ABC transporter, 100.0 3.2E-60 1.1E-64 448.4 28.9 228 63-294 3-234 (359)
15 1vpl_A ABC transporter, ATP-bi 100.0 4.2E-60 1.4E-64 429.2 28.1 221 60-284 12-235 (256)
16 3d31_A Sulfate/molybdate ABC t 100.0 3.4E-60 1.2E-64 446.8 27.2 226 63-294 1-228 (348)
17 2it1_A 362AA long hypothetical 100.0 4.6E-60 1.6E-64 447.8 27.7 228 63-294 3-234 (362)
18 1oxx_K GLCV, glucose, ABC tran 100.0 3.5E-60 1.2E-64 447.7 26.1 230 63-294 3-241 (353)
19 1v43_A Sugar-binding transport 100.0 8.6E-60 3E-64 447.4 28.7 229 62-294 10-242 (372)
20 2onk_A Molybdate/tungstate ABC 100.0 5.1E-60 1.7E-64 424.8 25.0 215 63-284 1-216 (240)
21 1g29_1 MALK, maltose transport 100.0 1E-59 3.5E-64 447.2 27.0 228 63-294 3-240 (372)
22 2ixe_A Antigen peptide transpo 100.0 3E-59 1E-63 426.8 26.8 228 61-290 14-251 (271)
23 2ff7_A Alpha-hemolysin translo 100.0 7.6E-59 2.6E-63 418.8 29.0 215 63-285 7-233 (247)
24 2yz2_A Putative ABC transporte 100.0 9.7E-59 3.3E-63 422.3 25.8 218 63-284 2-227 (266)
25 2ihy_A ABC transporter, ATP-bi 100.0 2.8E-59 9.5E-64 428.7 22.1 222 60-284 18-252 (279)
26 1mv5_A LMRA, multidrug resista 100.0 9.3E-59 3.2E-63 417.0 21.6 215 63-284 1-226 (243)
27 2d2e_A SUFC protein; ABC-ATPas 100.0 1.8E-58 6.2E-63 416.9 21.1 217 63-281 3-230 (250)
28 2ghi_A Transport protein; mult 100.0 1.8E-57 6.3E-62 412.6 27.4 222 62-291 16-249 (260)
29 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-57 4.3E-62 411.3 25.9 212 62-284 3-222 (249)
30 3b5x_A Lipid A export ATP-bind 100.0 2.6E-56 9E-61 446.4 34.2 224 61-291 339-574 (582)
31 3b60_A Lipid A export ATP-bind 100.0 2.4E-56 8.3E-61 446.6 33.5 224 61-291 339-574 (582)
32 2nq2_C Hypothetical ABC transp 100.0 7.2E-57 2.5E-61 407.2 26.3 208 62-284 3-217 (253)
33 2zu0_C Probable ATP-dependent 100.0 2.7E-57 9.2E-62 413.0 23.7 222 60-283 17-253 (267)
34 3qf4_A ABC transporter, ATP-bi 100.0 2.9E-56 9.8E-61 446.6 32.4 225 61-292 339-574 (587)
35 4a82_A Cystic fibrosis transme 100.0 3.3E-56 1.1E-60 445.4 31.6 225 61-293 337-573 (578)
36 3qf4_B Uncharacterized ABC tra 100.0 1.7E-56 5.8E-61 449.1 26.4 222 62-291 353-585 (598)
37 3gd7_A Fusion complex of cysti 100.0 1.1E-56 3.8E-61 428.4 23.1 225 61-295 17-254 (390)
38 2yl4_A ATP-binding cassette SU 100.0 2.7E-55 9.4E-60 440.0 33.9 218 62-284 339-570 (595)
39 2pjz_A Hypothetical protein ST 100.0 5.2E-56 1.8E-60 403.8 21.0 210 63-284 1-215 (263)
40 2pze_A Cystic fibrosis transme 100.0 4E-55 1.4E-59 390.2 25.9 203 62-285 5-219 (229)
41 1sgw_A Putative ABC transporte 100.0 1.8E-56 6.1E-61 395.3 15.5 202 61-273 8-210 (214)
42 2cbz_A Multidrug resistance-as 100.0 3.8E-55 1.3E-59 392.3 22.3 208 63-291 3-224 (237)
43 4f4c_A Multidrug resistance pr 100.0 4.3E-55 1.5E-59 471.4 23.4 224 62-290 1075-1310(1321)
44 4f4c_A Multidrug resistance pr 100.0 1.8E-53 6.3E-58 458.7 32.9 219 62-287 414-644 (1321)
45 3g5u_A MCG1178, multidrug resi 100.0 2.1E-51 7.1E-56 441.8 31.0 218 62-286 386-615 (1284)
46 3g5u_A MCG1178, multidrug resi 100.0 4.3E-51 1.5E-55 439.3 30.1 224 62-291 1029-1265(1284)
47 2bbs_A Cystic fibrosis transme 100.0 1.6E-51 5.5E-56 379.1 21.7 198 61-284 38-247 (290)
48 3bk7_A ABC transporter ATP-bin 100.0 8.2E-47 2.8E-51 378.8 21.0 206 61-284 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 6.7E-47 2.3E-51 375.1 19.4 207 60-284 284-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 2.1E-46 7.3E-51 371.2 21.4 206 61-282 267-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 6.7E-45 2.3E-49 364.7 19.1 203 67-285 350-560 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 3.6E-45 1.2E-49 366.9 14.1 199 63-271 83-304 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 3.6E-45 1.2E-49 362.7 12.6 198 64-271 21-234 (538)
54 2iw3_A Elongation factor 3A; a 100.0 5.6E-44 1.9E-48 371.4 18.8 204 60-278 668-981 (986)
55 3ux8_A Excinuclease ABC, A sub 100.0 1.3E-43 4.5E-48 359.7 17.5 206 76-287 30-301 (670)
56 2iw3_A Elongation factor 3A; a 100.0 9.8E-42 3.4E-46 354.6 27.9 197 63-283 435-634 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.6E-41 5.4E-46 344.4 20.1 210 77-293 335-649 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 7.1E-42 2.4E-46 342.8 16.2 198 68-273 82-299 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 6.9E-42 2.4E-46 338.9 9.7 194 68-272 4-214 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 2.3E-38 7.8E-43 326.2 20.8 226 61-294 500-837 (842)
61 3pih_A Uvrabc system protein A 100.0 2.6E-38 8.9E-43 328.1 21.3 222 63-296 589-914 (916)
62 2r6f_A Excinuclease ABC subuni 100.0 4.3E-38 1.5E-42 325.4 19.3 219 62-292 628-950 (972)
63 2npi_A Protein CLP1; CLP1-PCF1 100.0 2E-42 7E-47 336.7 -14.6 197 61-284 116-338 (460)
64 2ygr_A Uvrabc system protein A 100.0 3E-37 1E-41 320.1 19.9 222 61-294 645-970 (993)
65 4aby_A DNA repair protein RECN 100.0 2.9E-36 1E-40 288.2 17.6 196 78-277 49-381 (415)
66 3b85_A Phosphate starvation-in 100.0 3.1E-36 1E-40 264.7 -10.6 156 76-273 12-172 (208)
67 1e69_A Chromosome segregation 100.0 2.4E-32 8.3E-37 254.1 13.1 196 81-281 16-310 (322)
68 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 1.4E-31 4.7E-36 253.5 16.7 85 189-275 274-364 (365)
69 4gp7_A Metallophosphoesterase; 100.0 1.4E-31 4.9E-36 227.1 7.4 150 82-265 1-168 (171)
70 2v9p_A Replication protein E1; 100.0 3.6E-35 1.2E-39 271.5 -19.5 163 63-282 101-264 (305)
71 1tq4_A IIGP1, interferon-induc 100.0 2E-33 6.8E-38 269.7 -8.8 177 77-272 36-255 (413)
72 1znw_A Guanylate kinase, GMP k 100.0 1.1E-33 3.8E-38 246.8 -11.4 175 77-269 9-202 (207)
73 1ye8_A Protein THEP1, hypothet 100.0 1.8E-31 6E-36 228.8 1.7 148 92-275 2-159 (178)
74 3b9q_A Chloroplast SRP recepto 100.0 1.6E-31 5.4E-36 247.1 -0.9 178 79-274 89-285 (302)
75 2dpy_A FLII, flagellum-specifi 100.0 1.3E-31 4.4E-36 259.3 -7.2 196 62-283 130-343 (438)
76 2og2_A Putative signal recogni 100.0 4.9E-30 1.7E-34 242.2 0.7 175 81-273 148-341 (359)
77 1z6g_A Guanylate kinase; struc 100.0 4.8E-32 1.6E-36 238.9 -13.2 179 78-267 11-206 (218)
78 2obl_A ESCN; ATPase, hydrolase 99.9 1.6E-29 5.4E-34 237.9 -2.7 197 62-282 44-253 (347)
79 3sop_A Neuronal-specific septi 99.9 4.2E-29 1.4E-33 227.4 -3.1 148 92-257 4-152 (270)
80 3aez_A Pantothenate kinase; tr 99.9 4.6E-30 1.6E-34 238.3 -11.0 180 61-272 41-246 (312)
81 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.4E-28 4.7E-33 230.0 -1.3 132 79-272 160-291 (330)
82 1tf7_A KAIC; homohexamer, hexa 99.9 5.4E-30 1.9E-34 253.0 -11.8 181 63-270 12-209 (525)
83 1cr0_A DNA primase/helicase; R 99.9 1.6E-27 5.5E-32 218.2 4.6 185 77-273 22-237 (296)
84 2o8b_B DNA mismatch repair pro 99.9 2.3E-27 8E-32 249.4 6.0 170 60-274 747-930 (1022)
85 2o5v_A DNA replication and rep 99.9 3.8E-26 1.3E-30 215.7 9.8 85 190-282 260-354 (359)
86 3pih_A Uvrabc system protein A 99.9 1.8E-26 6.1E-31 239.6 4.3 161 105-285 383-561 (916)
87 1tf7_A KAIC; homohexamer, hexa 99.9 1.8E-26 6.3E-31 227.8 2.9 155 84-272 275-444 (525)
88 3qkt_A DNA double-strand break 99.9 6.2E-25 2.1E-29 205.6 13.2 80 188-269 242-327 (339)
89 4ad8_A DNA repair protein RECN 99.9 6.7E-25 2.3E-29 216.3 13.4 78 191-271 393-473 (517)
90 2jeo_A Uridine-cytidine kinase 99.9 3.6E-26 1.2E-30 204.2 -0.1 165 75-272 10-180 (245)
91 2ehv_A Hypothetical protein PH 99.9 2.2E-26 7.5E-31 203.7 -1.8 181 63-269 6-206 (251)
92 4a74_A DNA repair and recombin 99.9 2.5E-25 8.6E-30 194.5 2.9 151 86-272 21-201 (231)
93 3thx_A DNA mismatch repair pro 99.9 1.6E-24 5.4E-29 225.7 5.5 168 61-282 629-811 (934)
94 2r6f_A Excinuclease ABC subuni 99.9 1.3E-23 4.4E-28 217.7 11.2 130 151-284 451-600 (972)
95 2vf7_A UVRA2, excinuclease ABC 99.9 7.9E-24 2.7E-28 218.2 9.3 181 98-285 270-476 (842)
96 2eyu_A Twitching motility prot 99.9 1.7E-24 5.8E-29 196.0 1.8 140 64-269 6-146 (261)
97 1w1w_A Structural maintenance 99.9 7.9E-23 2.7E-27 196.9 13.6 76 192-269 331-410 (430)
98 2qnr_A Septin-2, protein NEDD5 99.9 4.1E-25 1.4E-29 203.9 -2.5 164 67-256 2-168 (301)
99 1rj9_A FTSY, signal recognitio 99.9 1.5E-24 5E-29 200.6 0.1 152 89-256 101-259 (304)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 9.9E-23 3.4E-27 169.5 10.4 84 188-273 51-142 (148)
101 2w0m_A SSO2452; RECA, SSPF, un 99.9 3.4E-24 1.2E-28 187.1 1.5 169 76-271 8-192 (235)
102 2ygr_A Uvrabc system protein A 99.9 2.2E-22 7.6E-27 209.0 14.5 131 150-285 467-618 (993)
103 1pui_A ENGB, probable GTP-bind 99.9 1.3E-24 4.5E-29 187.5 -2.3 175 63-247 3-202 (210)
104 3thx_B DNA mismatch repair pro 99.9 1E-23 3.6E-28 219.1 3.9 160 62-265 639-805 (918)
105 3asz_A Uridine kinase; cytidin 99.9 1.8E-25 6.1E-30 194.2 -8.1 146 87-256 3-162 (211)
106 1pzn_A RAD51, DNA repair and r 99.9 5.1E-24 1.8E-28 200.4 0.9 167 76-278 116-309 (349)
107 3szr_A Interferon-induced GTP- 99.9 1.6E-25 5.5E-30 224.7 -11.0 189 63-280 10-233 (608)
108 1ewq_A DNA mismatch repair pro 99.9 2.2E-23 7.6E-28 213.5 4.0 146 62-262 549-704 (765)
109 2i3b_A HCR-ntpase, human cance 99.9 3.8E-25 1.3E-29 191.2 -9.7 159 90-277 1-169 (189)
110 1lw7_A Transcriptional regulat 99.8 7.7E-26 2.6E-30 213.6 -19.7 177 79-282 157-353 (365)
111 1wb9_A DNA mismatch repair pro 99.8 3.1E-22 1.1E-26 206.0 3.7 169 62-277 576-751 (800)
112 1nlf_A Regulatory protein REPA 99.8 3.1E-21 1.1E-25 175.2 8.1 154 86-259 26-185 (279)
113 3jvv_A Twitching mobility prot 99.8 3E-21 1E-25 182.1 2.6 145 68-271 93-246 (356)
114 2qag_C Septin-7; cell cycle, c 99.8 8.4E-22 2.9E-26 189.4 -1.2 165 62-257 10-179 (418)
115 2cvh_A DNA repair and recombin 99.8 1.5E-19 5.1E-24 156.8 10.2 155 77-271 6-185 (220)
116 1s96_A Guanylate kinase, GMP k 99.8 1.9E-20 6.5E-25 165.2 1.7 141 85-282 11-158 (219)
117 2qag_B Septin-6, protein NEDD5 99.8 9.3E-21 3.2E-25 182.0 -0.5 177 64-255 17-219 (427)
118 3kta_B Chromosome segregation 99.8 1.2E-18 4.2E-23 148.3 10.9 83 188-273 58-146 (173)
119 2bbw_A Adenylate kinase 4, AK4 99.8 7.2E-21 2.5E-25 169.6 -4.1 144 89-243 26-199 (246)
120 2gza_A Type IV secretion syste 99.8 1.4E-20 5E-25 177.6 -3.1 153 65-272 137-303 (361)
121 1zp6_A Hypothetical protein AT 99.8 1.1E-21 3.8E-26 167.2 -9.8 149 86-252 5-158 (191)
122 2bdt_A BH3686; alpha-beta prot 99.8 1.3E-23 4.6E-28 179.5 -22.1 172 90-283 2-183 (189)
123 1n0w_A DNA repair protein RAD5 99.7 9.1E-19 3.1E-23 154.0 6.8 148 86-271 20-209 (243)
124 3e70_C DPA, signal recognition 99.7 3.4E-19 1.2E-23 166.2 4.3 167 86-274 125-307 (328)
125 2qm8_A GTPase/ATPase; G protei 99.7 6.8E-22 2.3E-26 185.1 -14.2 173 63-242 29-260 (337)
126 2yhs_A FTSY, cell division pro 99.7 1E-19 3.6E-24 177.2 0.3 156 80-253 283-447 (503)
127 1nij_A Hypothetical protein YJ 99.7 2.8E-22 9.5E-27 186.2 -17.1 156 91-261 5-195 (318)
128 2ewv_A Twitching motility prot 99.7 1.5E-19 5E-24 171.4 1.0 127 79-266 127-254 (372)
129 2f1r_A Molybdopterin-guanine d 99.7 2.4E-20 8.4E-25 158.6 -6.8 135 91-243 3-162 (171)
130 1htw_A HI0065; nucleotide-bind 99.7 1.8E-20 6.2E-25 157.4 -10.0 90 66-162 10-100 (158)
131 1lvg_A Guanylate kinase, GMP k 99.7 1.4E-20 4.8E-25 163.0 -12.4 154 88-270 2-173 (198)
132 2rcn_A Probable GTPase ENGC; Y 99.7 1.4E-17 4.8E-22 156.8 5.0 137 78-241 204-345 (358)
133 3lda_A DNA repair protein RAD5 99.7 5.7E-17 1.9E-21 154.9 7.8 150 86-272 174-364 (400)
134 2yv5_A YJEQ protein; hydrolase 99.7 3.8E-18 1.3E-22 157.2 -0.9 120 85-207 160-300 (302)
135 1p9r_A General secretion pathw 99.7 6.3E-20 2.1E-24 176.4 -14.4 146 64-217 144-314 (418)
136 3auy_A DNA double-strand break 99.6 2.9E-16 1E-20 148.4 9.0 77 190-269 276-359 (371)
137 1in4_A RUVB, holliday junction 99.6 3.7E-20 1.3E-24 172.6 -18.0 175 64-264 19-211 (334)
138 1u0l_A Probable GTPase ENGC; p 99.6 1.4E-17 4.9E-22 153.2 -1.5 111 85-197 164-294 (301)
139 2oap_1 GSPE-2, type II secreti 99.6 7.3E-19 2.5E-23 173.0 -11.1 171 78-264 248-459 (511)
140 3ec2_A DNA replication protein 99.6 7.1E-17 2.4E-21 136.6 1.4 112 84-256 32-144 (180)
141 1sxj_E Activator 1 40 kDa subu 99.6 4E-16 1.4E-20 145.0 6.5 139 91-257 37-176 (354)
142 1odf_A YGR205W, hypothetical 3 99.6 2.7E-17 9.2E-22 150.9 -1.9 125 88-228 29-168 (290)
143 2x8a_A Nuclear valosin-contain 99.6 5.6E-19 1.9E-23 160.6 -13.6 144 77-237 33-190 (274)
144 2kjq_A DNAA-related protein; s 99.6 1E-15 3.5E-20 126.9 6.2 92 79-254 30-124 (149)
145 1udx_A The GTP-binding protein 99.6 5.4E-17 1.9E-21 155.8 -2.0 152 80-252 147-305 (416)
146 3c8u_A Fructokinase; YP_612366 99.6 1.1E-17 3.8E-22 145.3 -8.0 142 87-264 19-168 (208)
147 1sq5_A Pantothenate kinase; P- 99.5 1.7E-17 5.8E-22 153.1 -10.4 139 62-227 36-199 (308)
148 3tr0_A Guanylate kinase, GMP k 99.5 7.4E-15 2.5E-19 125.9 4.4 124 84-221 1-127 (205)
149 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 2.2E-17 7.6E-22 157.3 -15.3 168 86-278 16-207 (392)
150 1t9h_A YLOQ, probable GTPase E 99.5 3.4E-15 1.2E-19 137.9 -0.4 115 85-202 168-303 (307)
151 3lnc_A Guanylate kinase, GMP k 99.5 2.1E-17 7.4E-22 145.5 -15.3 187 78-272 15-212 (231)
152 2dr3_A UPF0273 protein PH0284; 99.4 1.2E-14 4E-19 127.8 0.5 172 76-270 8-196 (247)
153 1vma_A Cell division protein F 99.4 6.8E-14 2.3E-18 129.1 4.9 113 82-240 96-211 (306)
154 1ls1_A Signal recognition part 99.4 1.3E-13 4.5E-18 126.5 6.1 142 64-252 77-219 (295)
155 2px0_A Flagellar biosynthesis 99.4 2.8E-13 9.7E-18 124.4 7.2 141 88-275 103-246 (296)
156 3euj_A Chromosome partition pr 99.4 1.6E-13 5.5E-18 133.7 4.4 62 65-130 8-69 (483)
157 2r6a_A DNAB helicase, replicat 99.4 9.4E-14 3.2E-18 134.5 2.6 181 77-273 190-401 (454)
158 2ius_A DNA translocase FTSK; n 99.3 7E-14 2.4E-18 137.1 -2.2 174 82-267 159-361 (512)
159 1iy2_A ATP-dependent metallopr 99.3 1E-15 3.5E-20 138.5 -14.8 142 64-222 50-195 (278)
160 2zr9_A Protein RECA, recombina 99.3 3.5E-12 1.2E-16 119.7 8.5 145 86-277 57-236 (349)
161 1qhl_A Protein (cell division 99.3 5.8E-14 2E-18 124.3 -4.3 75 63-146 9-91 (227)
162 1ixz_A ATP-dependent metallopr 99.3 1.1E-15 3.9E-20 136.0 -15.6 143 64-223 26-172 (254)
163 1oix_A RAS-related protein RAB 99.2 2.5E-13 8.4E-18 115.8 -3.1 133 92-240 31-189 (191)
164 3k1j_A LON protease, ATP-depen 99.2 2.5E-13 8.5E-18 136.0 -4.1 165 67-239 38-227 (604)
165 3hr8_A Protein RECA; alpha and 99.1 2.1E-11 7.1E-16 114.7 5.2 148 86-270 57-229 (356)
166 3kta_A Chromosome segregation 99.1 4.3E-12 1.5E-16 107.0 0.2 134 81-238 18-167 (182)
167 1svm_A Large T antigen; AAA+ f 99.1 3E-13 1E-17 128.2 -10.8 134 78-223 157-312 (377)
168 2f9l_A RAB11B, member RAS onco 99.1 1.2E-11 4E-16 105.6 -1.0 37 203-241 130-166 (199)
169 4e22_A Cytidylate kinase; P-lo 99.0 1.3E-11 4.6E-16 110.2 -2.0 66 79-147 19-96 (252)
170 4eun_A Thermoresistant glucoki 99.0 3.3E-11 1.1E-15 103.5 -1.6 74 82-160 21-95 (200)
171 3nwj_A ATSK2; P loop, shikimat 99.0 4.4E-11 1.5E-15 107.2 -1.0 53 62-114 16-72 (250)
172 2qtf_A Protein HFLX, GTP-bindi 99.0 1.4E-10 4.8E-15 109.3 2.1 143 90-242 178-353 (364)
173 2dy1_A Elongation factor G; tr 98.9 1.6E-10 5.6E-15 116.9 2.0 134 84-257 3-138 (665)
174 3cr8_A Sulfate adenylyltranfer 98.9 4.4E-11 1.5E-15 118.5 -2.8 92 86-182 365-468 (552)
175 2dhr_A FTSH; AAA+ protein, hex 98.9 2.5E-11 8.6E-16 118.9 -5.9 144 64-224 41-188 (499)
176 1zu4_A FTSY; GTPase, signal re 98.9 5E-10 1.7E-14 103.8 2.2 80 80-159 95-185 (320)
177 2j41_A Guanylate kinase; GMP, 98.9 9.5E-10 3.3E-14 93.8 3.4 61 85-148 1-61 (207)
178 3a00_A Guanylate kinase, GMP k 98.8 4.5E-10 1.5E-14 95.3 0.9 30 90-119 1-30 (186)
179 3uie_A Adenylyl-sulfate kinase 98.8 1.3E-10 4.4E-15 99.8 -3.2 61 67-129 3-65 (200)
180 2xau_A PRE-mRNA-splicing facto 98.8 2.8E-09 9.6E-14 109.6 5.7 75 190-265 186-262 (773)
181 2ce7_A Cell division protein F 98.8 5.2E-09 1.8E-13 101.9 7.2 117 77-258 38-167 (476)
182 3t34_A Dynamin-related protein 98.8 9.8E-09 3.4E-13 96.1 8.5 170 77-253 24-212 (360)
183 1jjv_A Dephospho-COA kinase; P 98.8 2.1E-09 7E-14 92.2 3.0 127 92-270 4-132 (206)
184 2e87_A Hypothetical protein PH 98.7 8.7E-09 3E-13 96.4 6.4 125 89-256 166-293 (357)
185 3ney_A 55 kDa erythrocyte memb 98.7 1.8E-09 6.1E-14 93.4 -0.9 84 84-180 13-109 (197)
186 4a1f_A DNAB helicase, replicat 98.7 3.5E-08 1.2E-12 92.1 7.7 130 77-253 33-164 (338)
187 1kgd_A CASK, peripheral plasma 98.6 4.9E-09 1.7E-13 88.5 1.3 36 88-123 3-39 (180)
188 1v5w_A DMC1, meiotic recombina 98.6 1.9E-07 6.6E-12 86.9 10.3 153 86-270 118-308 (343)
189 1cke_A CK, MSSA, protein (cyti 98.6 1.4E-09 4.9E-14 94.3 -4.3 58 90-147 5-74 (227)
190 3vaa_A Shikimate kinase, SK; s 98.6 2.6E-08 8.8E-13 85.2 3.4 38 77-114 12-49 (199)
191 2ffh_A Protein (FFH); SRP54, s 98.6 1.2E-07 4.2E-12 90.9 8.6 180 66-273 79-275 (425)
192 2www_A Methylmalonic aciduria 98.6 4E-08 1.4E-12 91.9 4.8 42 88-129 72-113 (349)
193 2z43_A DNA repair and recombin 98.5 2.9E-07 1E-11 84.9 10.4 153 86-270 103-289 (324)
194 1fnn_A CDC6P, cell division co 98.5 2.4E-07 8.3E-12 86.0 9.7 50 211-261 124-175 (389)
195 2vp4_A Deoxynucleoside kinase; 98.5 1.4E-08 4.8E-13 89.1 1.1 64 83-150 13-86 (230)
196 3tqc_A Pantothenate kinase; bi 98.5 2.2E-09 7.5E-14 99.5 -5.4 136 69-227 66-211 (321)
197 1rz3_A Hypothetical protein rb 98.5 2.2E-08 7.4E-13 86.0 1.1 47 86-132 18-64 (201)
198 3kl4_A SRP54, signal recogniti 98.5 2.6E-07 9.1E-12 88.8 8.3 40 89-128 96-135 (433)
199 1mky_A Probable GTP-binding pr 98.4 1.8E-07 6.2E-12 89.9 6.3 160 92-258 182-368 (439)
200 1ega_A Protein (GTP-binding pr 98.4 1.8E-08 6.2E-13 92.2 -1.3 147 89-266 7-170 (301)
201 1knq_A Gluconate kinase; ALFA/ 98.4 6.2E-08 2.1E-12 80.6 1.5 53 88-146 6-59 (175)
202 3tau_A Guanylate kinase, GMP k 98.4 1.9E-07 6.5E-12 80.5 4.0 35 88-122 6-41 (208)
203 3bh0_A DNAB-like replicative h 98.3 7.6E-07 2.6E-11 81.9 7.1 132 76-253 54-189 (315)
204 2qt1_A Nicotinamide riboside k 98.3 3.1E-07 1.1E-11 78.6 4.0 34 82-115 13-46 (207)
205 3m6a_A ATP-dependent protease 98.3 1.2E-07 4.3E-12 93.6 0.4 60 66-127 86-145 (543)
206 3b9p_A CG5977-PA, isoform A; A 98.2 6.2E-06 2.1E-10 74.2 11.3 73 196-268 97-186 (297)
207 1ypw_A Transitional endoplasmi 98.2 8E-08 2.7E-12 99.2 -2.1 31 85-115 233-263 (806)
208 2p67_A LAO/AO transport system 98.2 1.2E-07 4.1E-12 88.2 -0.7 65 64-129 31-95 (341)
209 2qby_A CDC6 homolog 1, cell di 98.2 2.8E-07 9.5E-12 85.2 1.4 30 88-117 43-72 (386)
210 3ice_A Transcription terminati 98.2 2.4E-07 8.4E-12 87.6 0.2 52 63-114 133-198 (422)
211 1kag_A SKI, shikimate kinase I 98.2 7.1E-07 2.4E-11 73.8 2.7 33 89-125 3-35 (173)
212 2pez_A Bifunctional 3'-phospho 98.1 3.5E-07 1.2E-11 76.5 0.1 40 88-128 3-44 (179)
213 3lxx_A GTPase IMAP family memb 98.1 2.4E-05 8.1E-10 68.3 12.0 28 92-119 31-58 (239)
214 2z4s_A Chromosomal replication 98.1 4.8E-07 1.7E-11 87.1 1.1 68 211-279 193-263 (440)
215 1f2t_A RAD50 ABC-ATPase; DNA d 98.1 4.1E-06 1.4E-10 68.7 5.8 31 81-112 15-45 (149)
216 1f6b_A SAR1; gtpases, N-termin 98.0 1.3E-06 4.5E-11 74.1 1.9 56 71-127 7-70 (198)
217 1u94_A RECA protein, recombina 98.0 1.9E-05 6.4E-10 74.0 9.9 74 201-274 128-235 (356)
218 4eaq_A DTMP kinase, thymidylat 98.0 2E-06 6.8E-11 75.6 2.9 45 79-124 12-59 (229)
219 3llm_A ATP-dependent RNA helic 98.0 2.2E-06 7.6E-11 75.0 3.1 149 87-263 73-228 (235)
220 3cf0_A Transitional endoplasmi 98.0 6.6E-06 2.3E-10 74.8 5.9 30 85-114 44-73 (301)
221 1m7g_A Adenylylsulfate kinase; 98.0 6.5E-07 2.2E-11 77.1 -0.8 44 85-128 20-65 (211)
222 2q6t_A DNAB replication FORK h 98.0 1.3E-05 4.5E-10 77.0 8.0 176 77-269 187-396 (444)
223 2i1q_A DNA repair and recombin 97.9 5.3E-05 1.8E-09 69.3 10.8 163 86-271 94-291 (322)
224 1m2o_B GTP-binding protein SAR 97.9 9.7E-06 3.3E-10 68.1 4.4 49 78-127 12-68 (190)
225 2gj8_A MNME, tRNA modification 97.8 1.2E-05 4.1E-10 66.5 4.6 27 88-114 2-28 (172)
226 1j8m_F SRP54, signal recogniti 97.8 1.7E-06 5.8E-11 79.1 -0.8 61 66-130 77-138 (297)
227 2w58_A DNAI, primosome compone 97.8 3.5E-05 1.2E-09 65.2 7.3 25 91-115 55-79 (202)
228 3qks_A DNA double-strand break 97.8 2E-05 7E-10 67.7 5.8 30 81-111 15-44 (203)
229 1sxj_C Activator 1 40 kDa subu 97.8 4.4E-07 1.5E-11 83.8 -5.6 53 75-127 29-83 (340)
230 2qag_A Septin-2, protein NEDD5 97.8 1.9E-06 6.5E-11 80.8 -1.7 57 62-125 16-72 (361)
231 3bos_A Putative DNA replicatio 97.7 8.9E-06 3E-10 69.9 2.3 26 89-114 51-76 (242)
232 2yvu_A Probable adenylyl-sulfa 97.7 8.4E-06 2.9E-10 68.4 1.7 39 87-125 10-49 (186)
233 1l8q_A Chromosomal replication 97.7 1.8E-05 6.2E-10 72.2 3.9 42 211-253 97-139 (324)
234 2wji_A Ferrous iron transport 97.7 4.2E-05 1.4E-09 62.5 5.4 24 92-115 5-28 (165)
235 1y63_A LMAJ004144AAA protein; 97.7 1.8E-05 6.3E-10 66.4 3.2 32 82-113 2-33 (184)
236 1sxj_D Activator 1 41 kDa subu 97.7 4.3E-06 1.5E-10 76.6 -0.9 42 212-256 133-174 (353)
237 2wjg_A FEOB, ferrous iron tran 97.7 2.7E-05 9.1E-10 64.5 3.8 22 92-113 9-30 (188)
238 2if2_A Dephospho-COA kinase; a 97.6 2.2E-05 7.5E-10 66.6 2.9 22 92-113 3-24 (204)
239 2ohf_A Protein OLA1, GTP-bindi 97.6 2.9E-05 1E-09 73.7 3.9 41 86-126 18-69 (396)
240 3h4m_A Proteasome-activating n 97.6 9.5E-05 3.2E-09 65.9 7.0 28 87-114 48-75 (285)
241 2qor_A Guanylate kinase; phosp 97.6 2.6E-05 8.9E-10 66.5 3.1 29 87-115 9-37 (204)
242 3auy_A DNA double-strand break 97.6 6E-05 2.1E-09 70.6 5.5 44 64-111 3-46 (371)
243 1njg_A DNA polymerase III subu 97.5 1.1E-05 3.9E-10 68.6 0.0 43 211-256 125-167 (250)
244 3t61_A Gluconokinase; PSI-biol 97.5 1.5E-05 5E-10 67.7 0.7 35 90-128 18-52 (202)
245 2p5t_B PEZT; postsegregational 97.5 2E-05 7E-10 69.7 1.0 42 86-129 28-69 (253)
246 1np6_A Molybdopterin-guanine d 97.5 3.4E-05 1.2E-09 65.0 2.1 37 91-127 7-46 (174)
247 1xp8_A RECA protein, recombina 97.5 0.0022 7.4E-08 60.1 14.6 140 86-272 70-244 (366)
248 2zej_A Dardarin, leucine-rich 97.5 6.1E-05 2.1E-09 62.7 3.4 26 92-117 4-29 (184)
249 2ga8_A Hypothetical 39.9 kDa p 97.5 1.8E-05 6.2E-10 74.0 0.1 37 78-114 10-48 (359)
250 1lv7_A FTSH; alpha/beta domain 97.4 5.2E-05 1.8E-09 66.8 3.0 46 79-128 36-81 (257)
251 3cm0_A Adenylate kinase; ATP-b 97.4 7.2E-05 2.5E-09 62.2 2.9 25 88-112 2-26 (186)
252 2v1u_A Cell division control p 97.4 0.00018 6E-09 66.2 5.6 28 88-115 42-69 (387)
253 3io5_A Recombination and repai 97.4 0.00064 2.2E-08 62.7 9.1 59 198-256 93-173 (333)
254 1q3t_A Cytidylate kinase; nucl 97.3 0.0001 3.5E-09 64.3 3.4 26 87-112 13-38 (236)
255 1q57_A DNA primase/helicase; d 97.3 0.0012 4.1E-08 64.1 11.1 68 201-269 341-440 (503)
256 3r20_A Cytidylate kinase; stru 97.3 4E-05 1.4E-09 67.6 0.4 32 90-121 9-43 (233)
257 4ag6_A VIRB4 ATPase, type IV s 97.3 6.8E-05 2.3E-09 70.5 1.7 60 211-271 261-335 (392)
258 3bgw_A DNAB-like replicative h 97.3 0.0016 5.6E-08 62.5 11.3 35 78-112 185-219 (444)
259 3kb2_A SPBC2 prophage-derived 97.3 0.00014 4.9E-09 59.3 3.2 23 92-114 3-25 (173)
260 3cmw_A Protein RECA, recombina 97.2 0.0015 5.3E-08 71.9 11.8 139 87-273 729-903 (1706)
261 1qhx_A CPT, protein (chloramph 97.2 0.00019 6.4E-09 59.2 3.7 26 90-115 3-28 (178)
262 2zts_A Putative uncharacterize 97.2 0.0015 5.1E-08 56.3 9.3 60 210-269 133-206 (251)
263 3ihw_A Centg3; RAS, centaurin, 97.2 0.00039 1.3E-08 57.9 5.2 36 92-127 22-66 (184)
264 1gtv_A TMK, thymidylate kinase 97.2 5.3E-05 1.8E-09 64.4 -0.3 30 92-121 2-31 (214)
265 2jaq_A Deoxyguanosine kinase; 97.2 0.00019 6.4E-09 60.2 3.1 23 92-114 2-24 (205)
266 1kht_A Adenylate kinase; phosp 97.1 0.00025 8.4E-09 58.9 3.5 26 89-114 2-27 (192)
267 1uf9_A TT1252 protein; P-loop, 97.1 0.00021 7.2E-09 60.0 2.9 32 90-126 8-39 (203)
268 3n70_A Transport activator; si 97.1 0.0012 4.3E-08 52.9 7.4 28 88-115 22-49 (145)
269 3lw7_A Adenylate kinase relate 97.1 0.00025 8.7E-09 57.5 3.2 19 92-110 3-21 (179)
270 1vht_A Dephospho-COA kinase; s 97.1 0.00026 8.9E-09 60.6 3.4 32 89-125 3-34 (218)
271 2rhm_A Putative kinase; P-loop 97.1 0.00027 9.1E-09 58.9 3.1 27 88-114 3-29 (193)
272 1jal_A YCHF protein; nucleotid 97.1 0.00043 1.5E-08 64.9 4.8 36 90-125 2-48 (363)
273 3d8b_A Fidgetin-like protein 1 97.1 0.0019 6.6E-08 59.9 9.2 27 88-114 115-141 (357)
274 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00077 2.6E-08 62.3 6.0 27 86-112 119-145 (331)
275 3iij_A Coilin-interacting nucl 97.0 0.00021 7.3E-09 59.2 2.0 26 88-113 9-34 (180)
276 2ze6_A Isopentenyl transferase 97.0 0.00029 9.8E-09 62.5 2.9 23 92-114 3-25 (253)
277 3trf_A Shikimate kinase, SK; a 97.0 0.00037 1.3E-08 57.8 3.5 26 89-114 4-29 (185)
278 1ex7_A Guanylate kinase; subst 97.0 0.00032 1.1E-08 59.6 3.0 21 93-113 4-24 (186)
279 1fzq_A ADP-ribosylation factor 97.0 0.00032 1.1E-08 58.1 2.9 22 92-113 18-39 (181)
280 2v54_A DTMP kinase, thymidylat 97.0 0.00045 1.5E-08 58.1 3.7 26 89-114 3-28 (204)
281 2b8t_A Thymidine kinase; deoxy 97.0 0.00071 2.4E-08 59.2 5.0 52 211-268 88-149 (223)
282 3dm5_A SRP54, signal recogniti 97.0 0.0049 1.7E-07 59.2 11.2 35 89-123 99-133 (443)
283 1via_A Shikimate kinase; struc 96.9 0.00039 1.3E-08 57.4 3.0 23 92-114 6-28 (175)
284 1gvn_B Zeta; postsegregational 96.9 0.0004 1.4E-08 62.8 3.2 36 88-125 31-66 (287)
285 1ly1_A Polynucleotide kinase; 96.9 0.00046 1.6E-08 56.6 3.3 22 91-112 3-24 (181)
286 2c95_A Adenylate kinase 1; tra 96.9 0.00049 1.7E-08 57.4 3.3 27 88-114 7-33 (196)
287 2plr_A DTMP kinase, probable t 96.9 0.00053 1.8E-08 57.8 3.5 28 89-116 3-30 (213)
288 2wwf_A Thymidilate kinase, put 96.9 0.00055 1.9E-08 57.9 3.5 26 88-113 8-33 (212)
289 4dcu_A GTP-binding protein ENG 96.9 0.00026 8.9E-09 68.0 1.4 56 198-258 88-144 (456)
290 1nn5_A Similar to deoxythymidy 96.8 0.00062 2.1E-08 57.6 3.5 26 88-113 7-32 (215)
291 3k53_A Ferrous iron transport 96.8 0.00056 1.9E-08 60.9 3.2 47 221-267 144-190 (271)
292 1tev_A UMP-CMP kinase; ploop, 96.8 0.00065 2.2E-08 56.3 3.3 25 89-113 2-26 (196)
293 3euj_A Chromosome partition pr 96.8 0.0014 5E-08 63.6 6.1 74 189-269 374-464 (483)
294 4fcw_A Chaperone protein CLPB; 96.8 0.00041 1.4E-08 62.3 2.1 31 91-121 48-78 (311)
295 1nks_A Adenylate kinase; therm 96.8 0.00064 2.2E-08 56.3 3.1 23 92-114 3-25 (194)
296 1xjc_A MOBB protein homolog; s 96.8 0.00038 1.3E-08 58.4 1.5 26 91-116 5-30 (169)
297 3ake_A Cytidylate kinase; CMP 96.8 0.00066 2.2E-08 57.1 3.0 23 92-114 4-26 (208)
298 2vli_A Antibiotic resistance p 96.7 0.00056 1.9E-08 56.5 2.3 27 88-114 3-29 (183)
299 3zvl_A Bifunctional polynucleo 96.7 0.0072 2.5E-07 57.3 10.4 27 87-113 255-281 (416)
300 2bwj_A Adenylate kinase 5; pho 96.7 0.00029 1E-08 58.9 0.6 28 87-114 9-36 (199)
301 2z0h_A DTMP kinase, thymidylat 96.7 0.00079 2.7E-08 56.1 3.2 23 92-114 2-24 (197)
302 1ko7_A HPR kinase/phosphatase; 96.7 0.0011 3.8E-08 60.9 4.4 47 78-125 133-183 (314)
303 2lkc_A Translation initiation 96.7 0.0023 7.8E-08 51.9 5.9 25 89-113 7-31 (178)
304 1aky_A Adenylate kinase; ATP:A 96.6 0.0011 3.9E-08 56.7 3.7 26 89-114 3-28 (220)
305 3cbq_A GTP-binding protein REM 96.6 0.00091 3.1E-08 56.2 3.0 22 92-113 25-46 (195)
306 3cmw_A Protein RECA, recombina 96.6 0.0085 2.9E-07 66.1 11.2 148 77-272 368-553 (1706)
307 2ged_A SR-beta, signal recogni 96.6 0.00097 3.3E-08 55.2 3.0 24 91-114 49-72 (193)
308 2erx_A GTP-binding protein DI- 96.6 0.0019 6.5E-08 51.8 4.7 22 92-113 5-26 (172)
309 3cmu_A Protein RECA, recombina 96.6 0.0032 1.1E-07 70.3 7.7 71 202-272 449-553 (2050)
310 1zd8_A GTP:AMP phosphotransfer 96.6 0.0011 3.9E-08 57.0 3.4 27 88-114 5-31 (227)
311 1z2a_A RAS-related protein RAB 96.6 0.001 3.5E-08 53.3 2.8 22 92-113 7-28 (168)
312 3q72_A GTP-binding protein RAD 96.6 0.00095 3.3E-08 53.6 2.6 23 92-114 4-26 (166)
313 2nzj_A GTP-binding protein REM 96.6 0.0012 4E-08 53.4 3.1 23 92-114 6-28 (175)
314 3fb4_A Adenylate kinase; psych 96.6 0.0012 4.1E-08 56.2 3.2 22 92-113 2-23 (216)
315 2pbr_A DTMP kinase, thymidylat 96.5 0.0012 4.3E-08 54.6 3.2 23 92-114 2-24 (195)
316 1e6c_A Shikimate kinase; phosp 96.5 0.0011 3.6E-08 54.2 2.7 24 91-114 3-26 (173)
317 3b1v_A Ferrous iron uptake tra 96.5 0.0013 4.4E-08 59.0 3.4 23 92-114 5-27 (272)
318 2ce2_X GTPase HRAS; signaling 96.5 0.0011 3.7E-08 52.8 2.6 22 92-113 5-26 (166)
319 2cdn_A Adenylate kinase; phosp 96.5 0.0015 5.3E-08 55.0 3.7 26 89-114 19-44 (201)
320 1zak_A Adenylate kinase; ATP:A 96.5 0.0011 3.9E-08 56.8 2.9 26 89-114 4-29 (222)
321 1kao_A RAP2A; GTP-binding prot 96.5 0.0012 4.1E-08 52.6 2.8 22 92-113 5-26 (167)
322 3q85_A GTP-binding protein REM 96.5 0.0013 4.5E-08 52.9 3.1 23 92-114 4-26 (169)
323 2pt5_A Shikimate kinase, SK; a 96.5 0.0014 4.9E-08 53.2 3.3 22 92-113 2-23 (168)
324 2dyk_A GTP-binding protein; GT 96.5 0.0012 4.2E-08 52.5 2.8 23 92-114 3-25 (161)
325 3hu3_A Transitional endoplasmi 96.5 0.0045 1.6E-07 60.1 7.3 28 87-114 235-262 (489)
326 1u8z_A RAS-related protein RAL 96.5 0.0012 4.2E-08 52.6 2.8 22 92-113 6-27 (168)
327 1qf9_A UMP/CMP kinase, protein 96.5 0.0014 4.7E-08 54.3 3.0 24 90-113 6-29 (194)
328 3tw8_B RAS-related protein RAB 96.5 0.0013 4.3E-08 53.4 2.8 23 92-114 11-33 (181)
329 1ukz_A Uridylate kinase; trans 96.5 0.0015 5E-08 55.1 3.3 26 89-114 14-39 (203)
330 1z0j_A RAB-22, RAS-related pro 96.5 0.0013 4.4E-08 52.8 2.8 23 92-114 8-30 (170)
331 1zuh_A Shikimate kinase; alpha 96.5 0.0016 5.4E-08 53.2 3.4 23 91-113 8-30 (168)
332 3dl0_A Adenylate kinase; phosp 96.5 0.0014 4.9E-08 55.7 3.2 23 92-114 2-24 (216)
333 1z08_A RAS-related protein RAB 96.5 0.0013 4.6E-08 52.8 2.8 22 92-113 8-29 (170)
334 1ek0_A Protein (GTP-binding pr 96.5 0.0013 4.6E-08 52.6 2.8 23 92-114 5-27 (170)
335 3iby_A Ferrous iron transport 96.4 0.0017 5.6E-08 57.7 3.6 23 92-114 3-25 (256)
336 1c1y_A RAS-related protein RAP 96.4 0.0014 4.7E-08 52.5 2.8 22 92-113 5-26 (167)
337 2dby_A GTP-binding protein; GD 96.4 0.0013 4.5E-08 61.7 3.0 21 93-113 4-24 (368)
338 1ky3_A GTP-binding protein YPT 96.4 0.0014 4.7E-08 53.2 2.8 23 92-114 10-32 (182)
339 2iyv_A Shikimate kinase, SK; t 96.4 0.0013 4.5E-08 54.5 2.7 23 91-113 3-25 (184)
340 1g16_A RAS-related protein SEC 96.4 0.0013 4.4E-08 52.8 2.6 23 92-114 5-27 (170)
341 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0014 4.9E-08 53.1 2.8 22 92-113 9-30 (177)
342 1ypw_A Transitional endoplasmi 96.4 0.0001 3.5E-09 76.0 -5.1 45 83-129 504-548 (806)
343 1svi_A GTP-binding protein YSX 96.4 0.0015 5E-08 54.1 2.9 23 91-113 24-46 (195)
344 3lxw_A GTPase IMAP family memb 96.4 0.0017 5.7E-08 57.1 3.3 23 92-114 23-45 (247)
345 2fn4_A P23, RAS-related protei 96.4 0.0014 4.8E-08 53.2 2.6 22 92-113 11-32 (181)
346 3pqc_A Probable GTP-binding pr 96.4 0.0015 5.3E-08 53.7 2.9 23 92-114 25-47 (195)
347 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0018 6.3E-08 57.3 3.5 25 89-113 3-27 (260)
348 2cxx_A Probable GTP-binding pr 96.4 0.0015 5.1E-08 53.6 2.7 23 92-114 3-25 (190)
349 2grj_A Dephospho-COA kinase; T 96.4 0.0018 6.2E-08 55.0 3.2 24 90-113 12-35 (192)
350 2ew1_A RAS-related protein RAB 96.4 0.0032 1.1E-07 53.2 4.8 22 92-113 28-49 (201)
351 1moz_A ARL1, ADP-ribosylation 96.4 0.001 3.5E-08 54.4 1.6 23 90-112 18-40 (183)
352 1uj2_A Uridine-cytidine kinase 96.4 0.0018 6.1E-08 56.9 3.2 24 91-114 23-46 (252)
353 1r2q_A RAS-related protein RAB 96.3 0.0017 5.9E-08 52.0 2.8 22 92-113 8-29 (170)
354 3t1o_A Gliding protein MGLA; G 96.3 0.0018 6.1E-08 53.3 2.9 25 92-116 16-40 (198)
355 4dsu_A GTPase KRAS, isoform 2B 96.3 0.0017 5.9E-08 53.1 2.8 23 92-114 6-28 (189)
356 3clv_A RAB5 protein, putative; 96.3 0.0017 5.9E-08 53.5 2.8 23 92-114 9-31 (208)
357 2oil_A CATX-8, RAS-related pro 96.3 0.0018 6E-08 53.7 2.8 22 92-113 27-48 (193)
358 2hxs_A RAB-26, RAS-related pro 96.3 0.002 6.9E-08 52.2 3.1 22 92-113 8-29 (178)
359 3bc1_A RAS-related protein RAB 96.3 0.0018 6.1E-08 53.1 2.8 22 92-113 13-34 (195)
360 1upt_A ARL1, ADP-ribosylation 96.3 0.0018 6.3E-08 52.0 2.8 21 92-112 9-29 (171)
361 1wf3_A GTP-binding protein; GT 96.3 0.002 7E-08 58.5 3.3 22 92-113 9-30 (301)
362 1r8s_A ADP-ribosylation factor 96.3 0.0019 6.6E-08 51.6 2.8 20 93-112 3-22 (164)
363 3tlx_A Adenylate kinase 2; str 96.3 0.0024 8.1E-08 56.0 3.4 25 89-113 28-52 (243)
364 2y8e_A RAB-protein 6, GH09086P 96.3 0.0019 6.4E-08 52.3 2.6 22 92-113 16-37 (179)
365 2xb4_A Adenylate kinase; ATP-b 96.3 0.0023 7.9E-08 55.2 3.3 23 92-114 2-24 (223)
366 2g6b_A RAS-related protein RAB 96.2 0.0021 7.1E-08 52.3 2.8 23 92-114 12-34 (180)
367 1a7j_A Phosphoribulokinase; tr 96.2 0.0011 3.8E-08 60.0 1.2 26 89-114 4-29 (290)
368 2a9k_A RAS-related protein RAL 96.2 0.0021 7.1E-08 52.4 2.8 22 92-113 20-41 (187)
369 2f6r_A COA synthase, bifunctio 96.2 0.0022 7.5E-08 57.6 3.1 23 90-112 75-97 (281)
370 1z0f_A RAB14, member RAS oncog 96.2 0.0021 7.2E-08 52.0 2.8 23 92-114 17-39 (179)
371 3t5d_A Septin-7; GTP-binding p 96.2 0.0019 6.5E-08 57.5 2.7 23 92-114 10-32 (274)
372 3iev_A GTP-binding protein ERA 96.2 0.0023 8E-08 58.2 3.3 22 92-113 12-33 (308)
373 3con_A GTPase NRAS; structural 96.2 0.0021 7.3E-08 53.0 2.8 22 92-113 23-44 (190)
374 2efe_B Small GTP-binding prote 96.2 0.0023 8E-08 52.0 2.8 23 92-114 14-36 (181)
375 1jbk_A CLPB protein; beta barr 96.2 0.0031 1.1E-07 51.3 3.6 27 88-114 41-67 (195)
376 2bme_A RAB4A, RAS-related prot 96.2 0.0022 7.6E-08 52.5 2.6 22 92-113 12-33 (186)
377 4dhe_A Probable GTP-binding pr 96.1 0.0018 6E-08 55.0 2.0 24 91-114 30-53 (223)
378 2xtp_A GTPase IMAP family memb 96.1 0.0027 9.2E-08 55.7 3.2 23 92-114 24-46 (260)
379 3cmu_A Protein RECA, recombina 96.1 0.04 1.4E-06 61.7 13.0 36 76-111 1065-1102(2050)
380 2bov_A RAla, RAS-related prote 96.1 0.0025 8.4E-08 53.1 2.8 22 92-113 16-37 (206)
381 1nrj_B SR-beta, signal recogni 96.1 0.0027 9.1E-08 53.7 3.0 23 92-114 14-36 (218)
382 1ksh_A ARF-like protein 2; sma 96.1 0.0027 9.1E-08 52.2 2.9 26 89-114 17-42 (186)
383 1vg8_A RAS-related protein RAB 96.1 0.0026 8.7E-08 53.1 2.8 23 92-114 10-32 (207)
384 2gf0_A GTP-binding protein DI- 96.1 0.0025 8.4E-08 52.8 2.6 21 92-112 10-30 (199)
385 3be4_A Adenylate kinase; malar 96.1 0.0029 1E-07 54.2 3.2 26 89-114 4-29 (217)
386 3t5g_A GTP-binding protein RHE 96.1 0.005 1.7E-07 50.2 4.5 21 92-112 8-28 (181)
387 1m7b_A RND3/RHOE small GTP-bin 96.1 0.0025 8.4E-08 52.5 2.6 22 92-113 9-30 (184)
388 2gf9_A RAS-related protein RAB 96.1 0.0026 9E-08 52.5 2.8 23 92-114 24-46 (189)
389 3tkl_A RAS-related protein RAB 96.1 0.0027 9.1E-08 52.5 2.8 23 92-114 18-40 (196)
390 1e4v_A Adenylate kinase; trans 96.1 0.0029 9.9E-08 53.9 3.0 23 92-114 2-24 (214)
391 1sky_E F1-ATPase, F1-ATP synth 96.1 0.0011 3.8E-08 64.1 0.5 46 77-123 139-184 (473)
392 3kkq_A RAS-related protein M-R 96.1 0.0027 9.4E-08 51.9 2.8 22 92-113 20-41 (183)
393 2fg5_A RAB-22B, RAS-related pr 96.1 0.0026 8.9E-08 52.8 2.6 23 92-114 25-47 (192)
394 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0028 9.7E-08 51.6 2.8 21 92-112 7-27 (186)
395 1zbd_A Rabphilin-3A; G protein 96.0 0.0032 1.1E-07 52.5 3.1 23 92-114 10-32 (203)
396 2wsm_A Hydrogenase expression/ 96.0 0.0029 1E-07 53.7 2.9 24 91-114 31-54 (221)
397 4edh_A DTMP kinase, thymidylat 96.0 0.0036 1.2E-07 54.1 3.4 29 88-116 4-32 (213)
398 2il1_A RAB12; G-protein, GDP, 96.0 0.0029 1E-07 52.6 2.7 22 92-113 28-49 (192)
399 1ltq_A Polynucleotide kinase; 96.0 0.0034 1.2E-07 56.2 3.3 22 91-112 3-24 (301)
400 1z06_A RAS-related protein RAB 96.0 0.0031 1.1E-07 52.0 2.8 22 92-113 22-43 (189)
401 3oes_A GTPase rhebl1; small GT 96.0 0.0029 9.8E-08 53.0 2.6 23 92-114 26-48 (201)
402 3cnl_A YLQF, putative uncharac 96.0 0.0039 1.3E-07 55.6 3.6 30 91-120 100-129 (262)
403 2o52_A RAS-related protein RAB 96.0 0.0032 1.1E-07 52.8 2.9 22 92-113 27-48 (200)
404 2cjw_A GTP-binding protein GEM 96.0 0.0031 1.1E-07 52.7 2.8 22 92-113 8-29 (192)
405 2h57_A ADP-ribosylation factor 96.0 0.0025 8.6E-08 52.7 2.1 23 92-114 23-45 (190)
406 3bwd_D RAC-like GTP-binding pr 96.0 0.0033 1.1E-07 51.2 2.8 22 92-113 10-31 (182)
407 3dz8_A RAS-related protein RAB 96.0 0.003 1E-07 52.3 2.6 23 92-114 25-47 (191)
408 2a5j_A RAS-related protein RAB 96.0 0.0033 1.1E-07 52.1 2.8 23 92-114 23-45 (191)
409 3i8s_A Ferrous iron transport 96.0 0.0036 1.2E-07 55.9 3.2 23 92-114 5-27 (274)
410 1ak2_A Adenylate kinase isoenz 96.0 0.0044 1.5E-07 53.6 3.7 26 89-114 15-40 (233)
411 3a1s_A Iron(II) transport prot 96.0 0.0038 1.3E-07 55.3 3.4 23 92-114 7-29 (258)
412 3lv8_A DTMP kinase, thymidylat 96.0 0.004 1.4E-07 54.7 3.4 27 89-115 26-52 (236)
413 1zj6_A ADP-ribosylation factor 96.0 0.0038 1.3E-07 51.4 3.1 23 91-113 17-39 (187)
414 1jwy_B Dynamin A GTPase domain 96.0 0.0036 1.2E-07 56.3 3.2 23 92-114 26-48 (315)
415 3llu_A RAS-related GTP-binding 96.0 0.0039 1.3E-07 52.0 3.2 25 92-116 22-46 (196)
416 4bas_A ADP-ribosylation factor 95.9 0.0038 1.3E-07 51.6 3.1 22 92-113 19-40 (199)
417 2iwr_A Centaurin gamma 1; ANK 95.9 0.003 1E-07 51.4 2.3 22 92-113 9-30 (178)
418 2qu8_A Putative nucleolar GTP- 95.9 0.0039 1.3E-07 53.5 3.1 22 92-113 31-52 (228)
419 3reg_A RHO-like small GTPase; 95.9 0.0035 1.2E-07 52.0 2.8 23 92-114 25-47 (194)
420 2atv_A RERG, RAS-like estrogen 95.9 0.0036 1.2E-07 52.1 2.8 22 92-113 30-51 (196)
421 3d3q_A TRNA delta(2)-isopenten 95.9 0.0038 1.3E-07 57.9 3.2 25 91-115 8-32 (340)
422 3v9p_A DTMP kinase, thymidylat 95.9 0.0034 1.2E-07 54.9 2.7 28 88-115 23-50 (227)
423 2p65_A Hypothetical protein PF 95.9 0.0041 1.4E-07 50.6 3.1 28 88-115 41-68 (187)
424 2bcg_Y Protein YP2, GTP-bindin 95.9 0.0033 1.1E-07 52.6 2.6 23 92-114 10-32 (206)
425 1zd9_A ADP-ribosylation factor 95.9 0.0036 1.2E-07 51.8 2.8 22 92-113 24-45 (188)
426 2h17_A ADP-ribosylation factor 95.9 0.0032 1.1E-07 51.7 2.4 22 92-113 23-44 (181)
427 1x3s_A RAS-related protein RAB 95.9 0.0036 1.2E-07 51.5 2.8 22 92-113 17-38 (195)
428 4tmk_A Protein (thymidylate ki 95.9 0.0046 1.6E-07 53.4 3.5 27 89-115 2-28 (213)
429 2h92_A Cytidylate kinase; ross 95.9 0.0039 1.3E-07 53.0 3.0 25 90-114 3-27 (219)
430 3cph_A RAS-related protein SEC 95.9 0.0036 1.2E-07 52.4 2.8 22 92-113 22-43 (213)
431 2p5s_A RAS and EF-hand domain 95.9 0.0037 1.3E-07 52.2 2.8 23 92-114 30-52 (199)
432 2f7s_A C25KG, RAS-related prot 95.9 0.0042 1.4E-07 52.4 3.1 23 92-114 27-49 (217)
433 3u61_B DNA polymerase accessor 95.9 0.028 9.7E-07 50.6 8.9 42 212-256 105-147 (324)
434 2q3h_A RAS homolog gene family 95.9 0.0043 1.5E-07 51.6 3.1 22 92-113 22-43 (201)
435 3a8t_A Adenylate isopentenyltr 95.9 0.0053 1.8E-07 56.9 3.9 26 89-114 39-64 (339)
436 2j1l_A RHO-related GTP-binding 95.8 0.0042 1.4E-07 52.7 3.0 22 92-113 36-57 (214)
437 2fv8_A H6, RHO-related GTP-bin 95.8 0.0038 1.3E-07 52.6 2.6 23 92-114 27-49 (207)
438 3tmk_A Thymidylate kinase; pho 95.8 0.0054 1.8E-07 53.2 3.5 33 88-121 3-35 (216)
439 1gwn_A RHO-related GTP-binding 95.8 0.004 1.4E-07 52.7 2.6 23 92-114 30-52 (205)
440 2ocp_A DGK, deoxyguanosine kin 95.8 0.0051 1.7E-07 53.5 3.3 27 89-115 1-27 (241)
441 3c5c_A RAS-like protein 12; GD 95.8 0.0045 1.5E-07 51.3 2.8 22 92-113 23-44 (187)
442 3exa_A TRNA delta(2)-isopenten 95.7 0.0055 1.9E-07 56.3 3.5 25 90-114 3-27 (322)
443 2fu5_C RAS-related protein RAB 95.7 0.003 1E-07 51.6 1.5 22 92-113 10-31 (183)
444 3ld9_A DTMP kinase, thymidylat 95.7 0.0058 2E-07 53.3 3.4 28 88-115 19-46 (223)
445 3def_A T7I23.11 protein; chlor 95.7 0.0052 1.8E-07 54.3 3.2 23 92-114 38-60 (262)
446 3tqf_A HPR(Ser) kinase; transf 95.7 0.009 3.1E-07 50.3 4.4 34 78-112 5-38 (181)
447 2b6h_A ADP-ribosylation factor 95.7 0.0044 1.5E-07 51.6 2.6 24 90-113 29-52 (192)
448 2fh5_B SR-beta, signal recogni 95.7 0.0071 2.4E-07 50.9 3.9 23 92-114 9-31 (214)
449 2gco_A H9, RHO-related GTP-bin 95.7 0.0045 1.5E-07 51.8 2.6 22 92-113 27-48 (201)
450 4djt_A GTP-binding nuclear pro 95.7 0.0028 9.6E-08 53.6 1.3 23 92-114 13-35 (218)
451 1h65_A Chloroplast outer envel 95.7 0.0053 1.8E-07 54.4 3.1 23 92-114 41-63 (270)
452 2aka_B Dynamin-1; fusion prote 95.7 0.0049 1.7E-07 54.9 2.9 24 92-115 28-51 (299)
453 2r62_A Cell division protease 95.7 0.0015 5.2E-08 57.4 -0.5 32 80-113 36-67 (268)
454 3crm_A TRNA delta(2)-isopenten 95.7 0.0055 1.9E-07 56.4 3.3 24 91-114 6-29 (323)
455 2qmh_A HPR kinase/phosphorylas 95.7 0.0075 2.6E-07 51.9 3.8 36 78-114 23-58 (205)
456 1p5z_B DCK, deoxycytidine kina 95.7 0.0042 1.4E-07 54.8 2.3 28 88-115 22-49 (263)
457 2atx_A Small GTP binding prote 95.7 0.0049 1.7E-07 51.0 2.6 22 92-113 20-41 (194)
458 2hf9_A Probable hydrogenase ni 95.6 0.0055 1.9E-07 52.1 2.8 23 92-114 40-62 (226)
459 1qvr_A CLPB protein; coiled co 95.6 0.012 4.2E-07 60.8 5.9 27 91-117 589-615 (854)
460 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.0068 2.3E-07 52.7 3.4 26 89-114 38-63 (262)
461 2v3c_C SRP54, signal recogniti 95.5 0.0015 5.3E-08 62.5 -1.1 44 85-128 92-137 (432)
462 2g3y_A GTP-binding protein GEM 95.5 0.0075 2.5E-07 51.7 3.4 22 92-113 39-60 (211)
463 3umf_A Adenylate kinase; rossm 95.5 0.0058 2E-07 53.0 2.7 30 85-114 24-53 (217)
464 2yc2_C IFT27, small RAB-relate 95.5 0.0029 1E-07 52.6 0.5 22 92-113 22-43 (208)
465 2x77_A ADP-ribosylation factor 95.5 0.0044 1.5E-07 51.1 1.6 22 91-112 23-44 (189)
466 2hup_A RAS-related protein RAB 95.5 0.0064 2.2E-07 51.0 2.6 22 92-113 31-52 (201)
467 3cpj_B GTP-binding protein YPT 95.4 0.0071 2.4E-07 51.5 2.8 23 92-114 15-37 (223)
468 4gzl_A RAS-related C3 botulinu 95.4 0.0068 2.3E-07 51.0 2.6 21 92-112 32-52 (204)
469 3q3j_B RHO-related GTP-binding 95.3 0.0077 2.6E-07 51.2 2.8 22 92-113 29-50 (214)
470 3foz_A TRNA delta(2)-isopenten 95.3 0.01 3.4E-07 54.5 3.5 25 90-114 10-34 (316)
471 2j0v_A RAC-like GTP-binding pr 95.3 0.0079 2.7E-07 50.5 2.6 22 92-113 11-32 (212)
472 4hlc_A DTMP kinase, thymidylat 95.1 0.012 4.2E-07 50.3 3.3 26 90-115 2-27 (205)
473 2orw_A Thymidine kinase; TMTK, 95.1 0.013 4.5E-07 49.1 3.5 53 211-269 75-137 (184)
474 2r8r_A Sensor protein; KDPD, P 95.1 0.0022 7.7E-08 56.2 -1.5 44 209-253 81-125 (228)
475 2chg_A Replication factor C sm 95.1 0.012 3.9E-07 49.0 3.0 43 211-256 101-143 (226)
476 3sr0_A Adenylate kinase; phosp 95.1 0.012 4.3E-07 50.4 3.2 23 92-114 2-24 (206)
477 3eph_A TRNA isopentenyltransfe 95.0 0.013 4.3E-07 55.7 3.3 24 91-114 3-26 (409)
478 1puj_A YLQF, conserved hypothe 95.0 0.016 5.5E-07 52.1 3.9 30 90-119 120-149 (282)
479 3syl_A Protein CBBX; photosynt 95.0 0.014 4.9E-07 52.0 3.5 26 89-114 66-91 (309)
480 1lw7_A Transcriptional regulat 94.9 0.011 3.8E-07 54.8 2.7 30 193-222 295-329 (365)
481 3gj0_A GTP-binding nuclear pro 94.9 0.0096 3.3E-07 50.5 2.1 41 201-241 165-210 (221)
482 3pxi_A Negative regulator of g 94.9 0.046 1.6E-06 55.6 7.4 112 92-269 523-660 (758)
483 3uk6_A RUVB-like 2; hexameric 94.9 0.013 4.4E-07 53.7 3.0 38 88-125 68-105 (368)
484 3th5_A RAS-related C3 botulinu 93.8 0.0052 1.8E-07 51.4 0.0 21 92-112 32-52 (204)
485 3p32_A Probable GTPase RV1496/ 94.7 0.011 3.8E-07 54.7 2.2 26 89-114 78-103 (355)
486 2hjg_A GTP-binding protein ENG 94.7 0.013 4.5E-07 55.7 2.7 22 92-113 5-26 (436)
487 3r7w_A Gtpase1, GTP-binding pr 94.7 0.019 6.3E-07 52.0 3.6 24 91-114 4-27 (307)
488 3pvs_A Replication-associated 94.7 0.0081 2.8E-07 57.7 1.2 41 81-121 39-81 (447)
489 1wxq_A GTP-binding protein; st 94.7 0.015 5E-07 55.0 3.0 41 173-218 181-221 (397)
490 3l0i_B RAS-related protein RAB 94.7 0.0034 1.2E-07 52.4 -1.4 23 92-114 35-57 (199)
491 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.019 6.4E-07 52.4 3.3 40 88-128 43-82 (322)
492 2orv_A Thymidine kinase; TP4A 94.6 0.087 3E-06 46.2 7.3 52 211-269 89-150 (234)
493 2x2e_A Dynamin-1; nitration, h 94.5 0.013 4.4E-07 54.2 2.1 23 92-114 33-55 (353)
494 1ofh_A ATP-dependent HSL prote 94.5 0.019 6.4E-07 51.0 3.1 25 90-114 50-74 (310)
495 3ec1_A YQEH GTPase; atnos1, at 94.5 0.016 5.6E-07 54.0 2.8 25 89-113 161-185 (369)
496 2bjv_A PSP operon transcriptio 94.5 0.026 9E-07 49.4 4.0 28 89-116 28-55 (265)
497 2qgz_A Helicase loader, putati 94.5 0.022 7.6E-07 51.7 3.6 25 90-114 152-176 (308)
498 1d2n_A N-ethylmaleimide-sensit 94.5 0.018 6.1E-07 50.7 2.9 26 88-113 62-87 (272)
499 3hws_A ATP-dependent CLP prote 94.5 0.019 6.6E-07 52.9 3.1 25 90-114 51-75 (363)
500 2qby_B CDC6 homolog 3, cell di 94.4 0.023 7.7E-07 52.2 3.5 25 90-114 45-69 (384)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.1e-63 Score=468.16 Aligned_cols=234 Identities=37% Similarity=0.613 Sum_probs=207.7
Q ss_pred CCCeEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-
Q 022337 60 QKPKFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS- 135 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~- 135 (298)
.+++|+++||+|+|+++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++..+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45689999999999532 36999999999999999999999999999999999999999999999999998877543
Q ss_pred --HhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 136 --LRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 136 --~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|++||||||++.+++. ||+||+.++....+... .++++.++++.+||. ++.++++.+|||||||||+|||||+
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~ 179 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALA 179 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHh
Confidence 46789999999999875 99999999865544332 345688999999996 5889999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPM 289 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~ 289 (298)
.+|++|||||||||||+.+++.++++|++++++.|+|||+||||++.+..+||||++|++|++++.|+++++.. +.+++
T Consensus 180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~ 259 (366)
T 3tui_C 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 259 (366)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHH
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 99999999999999999999999999999987779999999999999999999999999999999999998754 34556
Q ss_pred HHHHh
Q 022337 290 ALRFL 294 (298)
Q Consensus 290 ~~~~~ 294 (298)
.+.|.
T Consensus 260 ~~~~~ 264 (366)
T 3tui_C 260 AQKFI 264 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.9e-63 Score=451.30 Aligned_cols=223 Identities=32% Similarity=0.567 Sum_probs=198.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD--LDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~--~~~~~~~~ 138 (298)
+++|+++||+++|+++.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.. .+..++++
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 3589999999999655569999999999999999999999999999999999999999999999999842 22345678
Q ss_pred ceEEEeCCC--CCCcccHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 139 KVGMLFQIP--ALFEGTVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 139 ~ig~v~Q~~--~l~~~tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+||||||++ .+|..||+||+.++....+... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999997 4666799999999865444322 245688999999996 68899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+++.|++++++.|+|||+||||++.+..+||||++|++|++++.|+++++..
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999973349999999999999999999999999999999999988754
No 3
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.7e-62 Score=442.85 Aligned_cols=222 Identities=28% Similarity=0.418 Sum_probs=203.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+..++++.+
T Consensus 9 ~~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 9 VALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CCEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred cceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 35899999999994 67899999999999999999999999999999999999999999999999999888877778889
Q ss_pred EEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC------CC
Q 022337 141 GMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN------EP 213 (298)
Q Consensus 141 g~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~------~p 213 (298)
+|+||++.+++ .||+||+.++...+.....++++.++++.+++. ++.++++.+|||||||||+|||||++ +|
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p 166 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP 166 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 99999998754 699999999865433334456789999999996 57899999999999999999999999 99
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
++|||||||+|||+.++..+++.|++++++.|+|||+||||++.+..+||||++|++|++++.|+++++..
T Consensus 167 ~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 167 RWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 99999999999999999999999999987657899999999999999999999999999999999998754
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.1e-61 Score=457.78 Aligned_cols=221 Identities=33% Similarity=0.516 Sum_probs=199.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC--CHHHHhcc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL--DVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~--~~~~~~~~ 139 (298)
++|+++||+|+|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....+++
T Consensus 3 ~~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 3 AALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred cEEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 3699999999994 67899999999999999999999999999999999999999999999999998321 12234678
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
||||||++.+|+. ||+||+.|+....+.. ..++++.++++.++|. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lL 160 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELI 160 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999985 9999999987654432 2346789999999996 6899999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||||||+..+.++++.|.++.++.|+|+|+||||++++..+||||++|++|+|++.|+++++..
T Consensus 161 LLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999988876679999999999999999999999999999999999999864
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=5.6e-62 Score=436.13 Aligned_cols=220 Identities=35% Similarity=0.533 Sum_probs=191.4
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH---
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL--- 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~--- 136 (298)
+++++||+++|+++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++..++
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 58999999999633 359999999999999999999999999999999999999999999999999988775442
Q ss_pred -hcceEEEeCCCCCCcc-cHHHHhHhCcccc---CCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH
Q 022337 137 -RRKVGMLFQIPALFEG-TVVDNIRYGPQLR---GKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 137 -~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral 209 (298)
++++|||||++.+++. ||+||+.++.... ... ...+++.++++.+++.+...++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 3469999999999885 9999999864322 111 12356788999999974345899999999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+.+|++|||||||+|||+.+++.+++.|++++++.|+|||+||||++.+ .+||||++|++|++++.++++++.
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC---
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999999765589999999999965 799999999999999998877653
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.6e-61 Score=459.76 Aligned_cols=228 Identities=32% Similarity=0.514 Sum_probs=205.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+|+++||+|+|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.. ++.|||
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 599999999994 67899999999999999999999999999999999999999999999999999876643 578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
|||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999985 99999999876544332 246788999999996 6899999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~~~~~~~~ 294 (298)
|||++||+..+.++++.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++.. +.+.+...|.
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~~~~ 234 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI 234 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHHHhc
Confidence 99999999999999999999977669999999999999999999999999999999999999854 3445555554
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9.8e-61 Score=434.87 Aligned_cols=230 Identities=39% Similarity=0.588 Sum_probs=201.0
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT--DLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~--~~~~~~~~~~ 139 (298)
++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ......++++
T Consensus 23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4799999999994 567999999999999999999999999999999999999999999999999985 2234456778
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCc-cccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGP-QLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~-~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+|||||++.+|+. ||+||+.++. ...+... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~l 180 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKI 180 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999998875 9999999863 2223221 245688999999996 578999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||||+|||+.+++.+++.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++... .......|.
T Consensus 181 llLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 259 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFL 259 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHHH
Confidence 9999999999999999999999999765 99999999999999999999999999999999999987543 334444443
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-60 Score=433.16 Aligned_cols=220 Identities=37% Similarity=0.552 Sum_probs=196.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC----------C
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD----------L 131 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~----------~ 131 (298)
++++++||+++|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.. .
T Consensus 5 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4799999999994 5679999999999999999999999999999999999999999999999999851 3
Q ss_pred CH---HHHhcceEEEeCCCCCCcc-cHHHHhHhCc-cccCCC--ccHHHHHHHHHHcCCCchh-hcCCCCCCChhHHHHH
Q 022337 132 DV---LSLRRKVGMLFQIPALFEG-TVVDNIRYGP-QLRGKK--LTENEVYKLLSLADLDSSF-LNKTGGEISVGQAQRV 203 (298)
Q Consensus 132 ~~---~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~-~~~~~~--~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkQRv 203 (298)
+. ..+++++|||||++.+|+. ||+||+.++. ...+.. ...+++.++++.+++. ++ .++++.+|||||||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv 162 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRV 162 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHH
Confidence 32 2456789999999998875 9999999853 322322 1245688999999997 57 8999999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||+||||++.+..+|||+++|++|++++.|+++++.
T Consensus 163 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 163 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999765 999999999999999999999999999999999999875
Q ss_pred c
Q 022337 284 E 284 (298)
Q Consensus 284 ~ 284 (298)
.
T Consensus 242 ~ 242 (262)
T 1b0u_A 242 G 242 (262)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-60 Score=427.65 Aligned_cols=221 Identities=28% Similarity=0.469 Sum_probs=196.3
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL-RRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~-~~~ 139 (298)
.++++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..++ ++.
T Consensus 4 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 45899999999995 5679999999999999999999999999999999999999999999999999977665444 456
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcccc-CCCccHHHHHHHHHHcC-CCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLR-GKKLTENEVYKLLSLAD-LDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+|+. ||+||+.++.... ......+++.++++.++ +. +..++++.+|||||||||+|||||+.+|++|
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 161 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999998885 9999999874211 11222456788899994 85 5788999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.+++.+++.|+++++ .|+|||++|||++.+..+|||+++|++|++++.|+++++..
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999999976 48999999999999999999999999999999999888754
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.4e-60 Score=450.15 Aligned_cols=233 Identities=34% Similarity=0.557 Sum_probs=205.4
Q ss_pred CCCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 59 IQKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 59 ~~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
..+++++++||+++|++++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r 87 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKR 87 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGS
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhC
Confidence 356789999999999335679999999999999999999999999999999999999999999999999976543 467
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
++|||||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 89999999999985 99999999865443322 245788999999996 688999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||||++||+..++++++.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++... .......|.
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 246 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFI 246 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHT
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhc
Confidence 9999999999999999999999999766689999999999999999999999999999999999988543 334444443
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2e-60 Score=441.26 Aligned_cols=222 Identities=33% Similarity=0.521 Sum_probs=197.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
...|+++||+|+|++++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++...+|++|
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 34699999999997567899999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
|||||++.+|+.||+|||.++... ...+++.++++.+++.+ ...++++.+|||||||||+|||||+
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~----~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~ 206 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVT----AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTIL 206 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTT----CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEEecCCccCcccHHHHHHhhccc----CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998532 23456667777776642 1234556899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
++|+|||||||||+||+.++..+++.|+++.+ ++|+|+||||++.+.. ||+|++|++|+|++.|+++++......+
T Consensus 207 ~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~~~~y 282 (306)
T 3nh6_A 207 KAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSRGGVY 282 (306)
T ss_dssp HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 99999999999999999999999999999864 7899999999999976 9999999999999999999987643333
No 12
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.5e-60 Score=423.92 Aligned_cols=213 Identities=37% Similarity=0.546 Sum_probs=190.9
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---Hh-
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS---LR- 137 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~---~~- 137 (298)
++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..+ ++
T Consensus 3 ~~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4799999999995 567999999999999999999999999999999999999999999999999997665432 33
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCccccCCC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLRGKK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+++||+||++.+|+. ||+||+.++...++.. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~ 160 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPI 160 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCS
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 679999999998874 9999999875433322 2245688999999996 57899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
+|||||||+|||+.+++.+++.|++++++ |+|||+||||++.+ .+||++++|++|++++.|+
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999766 99999999999988 7999999999999998875
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.2e-61 Score=433.50 Aligned_cols=218 Identities=27% Similarity=0.475 Sum_probs=195.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhcc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL-SLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ 139 (298)
+++++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..++.
T Consensus 5 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 35799999999994 56899999999999999999999999999999999999999999999999999765543 34678
Q ss_pred eEEEeCCCCCCc-ccHHHHhHhCccc--cC-----------CC--ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH
Q 022337 140 VGMLFQIPALFE-GTVVDNIRYGPQL--RG-----------KK--LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV 203 (298)
Q Consensus 140 ig~v~Q~~~l~~-~tv~eni~~~~~~--~~-----------~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv 203 (298)
+||+||++.+|+ .||+||+.++... .+ .. ...+++.++++.+++. ++.++++.+|||||||||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHHH
Confidence 999999998887 4999999987532 12 11 1235688999999996 578999999999999999
Q ss_pred HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhh
Q 022337 204 ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 204 ~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~ 281 (298)
+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||+||||++.+..+|||+++|++|++++.|++++
T Consensus 163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999999765 9999999999999999999999999999999999888
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-60 Score=448.43 Aligned_cols=228 Identities=32% Similarity=0.516 Sum_probs=203.2
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++++||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP--KYREVGM 79 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEEE
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh--hhCcEEE
Confidence 599999999994 5679999999999999999999999999999999999999999999999999976653 3578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
|||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999985 99999999865443321 235788999999996 6889999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||||+||+..++.+++.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~ 234 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFI 234 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 999999999999999999999766689999999999999999999999999999999999998643 334444444
No 15
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-60 Score=429.16 Aligned_cols=221 Identities=29% Similarity=0.510 Sum_probs=197.5
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ....++++
T Consensus 12 ~~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp --CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred cCCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 356899999999994 5689999999999999999999999999999999999999999999999999865 34556788
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+||+||++.+++. ||+||+.++...++... ..+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++|
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999998875 99999998643333222 235688899999996 5789999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||||+|||+.+++.+++.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999754 8999999999999999999999999999999999988753
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.4e-60 Score=446.76 Aligned_cols=226 Identities=29% Similarity=0.536 Sum_probs=201.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ ++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++++||
T Consensus 1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 589999999995 55 9999999999999999999999999999999999999999999999999976543 4678999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
|||++.+|+. ||+||+.|+...++.... +++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||||
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP 154 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEP 154 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESS
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 9999999985 999999998654333223 7789999999997 588999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|++||+..++.+++.|+++.++.|+|+|+||||++++..+|||+++|++|++++.|+++++... .......|.
T Consensus 155 ~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~ 228 (348)
T 3d31_A 155 LSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFV 228 (348)
T ss_dssp STTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHhc
Confidence 9999999999999999999776699999999999999999999999999999999999988643 233444443
No 17
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.6e-60 Score=447.82 Aligned_cols=228 Identities=36% Similarity=0.582 Sum_probs=203.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+++++|++++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .++++||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP--KDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGTTEEE
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH--hHCcEEE
Confidence 599999999994 5679999999999999999999999999999999999999999999999999976654 3578999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
|||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999985 99999999865443322 245688999999997 5889999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
||||+||+..+..+++.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~ 234 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFL 234 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred CccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHHc
Confidence 999999999999999999999766689999999999999999999999999999999999988543 334444443
No 18
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.5e-60 Score=447.66 Aligned_cols=230 Identities=33% Similarity=0.502 Sum_probs=202.4
Q ss_pred eEEEEeEEEEeCCCCc--ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC---HHHHh
Q 022337 63 KFRVRELRKESDDGAP--ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSLR 137 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~--vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~---~~~~~ 137 (298)
+++++||+++|+ +++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+ ....+
T Consensus 3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 699999999994 567 999999999999999999999999999999999999999999999999985411 12346
Q ss_pred cceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 138 RKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 138 ~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
+++|||||++.+|+. ||+||+.|+...++... .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~ 160 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPS 160 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 789999999999985 99999999875443322 245688999999996 68899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHH
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRF 293 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~ 293 (298)
+|||||||++||+..+.++++.|+++.++.|+|+|+||||++++..+||||++|++|++++.|+++++... .......|
T Consensus 161 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~ 240 (353)
T 1oxx_K 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASL 240 (353)
T ss_dssp EEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHh
Confidence 99999999999999999999999999766689999999999999999999999999999999999988543 33444444
Q ss_pred h
Q 022337 294 L 294 (298)
Q Consensus 294 ~ 294 (298)
.
T Consensus 241 ~ 241 (353)
T 1oxx_K 241 I 241 (353)
T ss_dssp H
T ss_pred c
Confidence 3
No 19
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=8.6e-60 Score=447.41 Aligned_cols=229 Identities=28% Similarity=0.468 Sum_probs=197.4
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.+++++||+++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .+++||
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 86 (372)
T 1v43_A 10 VEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP--KDRNIS 86 (372)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG--GGGTEE
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh--hhCcEE
Confidence 3699999999994 5679999999999999999999999999999999999999999999999999976653 357899
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
||||++.+|+. ||+||+.|+...++... .++++.++++.++|. ++.++++.+|||||||||+|||||+.+|++|||
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999985 99999999875544322 235688999999996 688999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHHHh
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALRFL 294 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~~~ 294 (298)
|||||+||+..++.+++.|+++.++.|.|+|+||||++++..+||||++|++|++++.|+++++... .+.....|.
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~a~~~ 242 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFI 242 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHh
Confidence 9999999999999999999999766689999999999999999999999999999999999988643 334444444
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.1e-60 Score=424.83 Aligned_cols=215 Identities=32% Similarity=0.447 Sum_probs=193.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|+ + +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ..++++||
T Consensus 1 ml~~~~l~~~y~-~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 1 MFLKVRAEKRLG-N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CCEEEEEEEEET-T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred CEEEEEEEEEeC-C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 478999999994 3 59999999999 999999999999999999999999999999999999986533 34678999
Q ss_pred EeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
+||++.+|+. ||+||+.++...++....++++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||||
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999998875 99999999764332222246688999999996 578999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|+|||+.+++.+++.|++++++.|+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 154 ts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999975558999999999999999999999999999999999988754
No 21
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1e-59 Score=447.21 Aligned_cols=228 Identities=30% Similarity=0.501 Sum_probs=202.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC------CCHHHH
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD------LDVLSL 136 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~------~~~~~~ 136 (298)
+++++||+++|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.. .+. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 699999999994 5679999999999999999999999999999999999999999999999999854 332 3
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP 213 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p 213 (298)
+++||||||++.+|+. ||+||+.|+...++... .++++.++++.++|. ++.++++.+|||||||||+|||||+.+|
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999985 99999999865443322 245688999999996 6889999999999999999999999999
Q ss_pred CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc-CChHHHH
Q 022337 214 EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA-KHPMALR 292 (298)
Q Consensus 214 ~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~-~~~~~~~ 292 (298)
++||||||||+||+..++.+++.|+++.++.|.|+|+||||++++..+|||+++|++|++++.|+++++... .+.....
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~ 238 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAG 238 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHHHH
Confidence 999999999999999999999999999766689999999999999999999999999999999999988543 3344444
Q ss_pred Hh
Q 022337 293 FL 294 (298)
Q Consensus 293 ~~ 294 (298)
|.
T Consensus 239 ~~ 240 (372)
T 1g29_1 239 FI 240 (372)
T ss_dssp HS
T ss_pred Hh
Confidence 43
No 22
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3e-59 Score=426.79 Aligned_cols=228 Identities=28% Similarity=0.411 Sum_probs=195.4
Q ss_pred CCeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 61 KPKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
..+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 357999999999964 267999999999999999999999999999999999999999999999999987666666778
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccccCCCcc------HHHHHHHHHHc--CCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLT------ENEVYKLLSLA--DLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+||||||++.+|+.||+||+.++......... ...+.++++.+ |++ +..++++.+|||||||||+|||||+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~ 172 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALARALI 172 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHh
Confidence 89999999999888999999987532211010 11234566766 664 4678889999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
.+|++|||||||+|||+.+++.+++.|+++.++.|+|||+||||++.+. .||+|++|++|++++.|+++++......+.
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~ 251 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVCEQGTHLQLMERGGCYR 251 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCcHHHH
Confidence 9999999999999999999999999999986555899999999999986 499999999999999999998865434343
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.6e-59 Score=418.76 Aligned_cols=215 Identities=35% Similarity=0.572 Sum_probs=191.6
Q ss_pred eEEEEeEEEEeC-CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESD-DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~-~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++++||+++|+ +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.||
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 489999999994 3467999999999999999999999999999999999999999999999999998777667788899
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcC-----------CCCCCChhHHHHHHHHHHHc
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNK-----------TGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGqkQRv~iAral~ 210 (298)
||||++.+|+.||+||+.++.. ....+++.++++.+++. ++.++ ++.+|||||||||+|||||+
T Consensus 87 ~v~Q~~~l~~~tv~enl~~~~~----~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 87 VVLQDNVLLNRSIIDNISLANP----GMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp EECSSCCCTTSBHHHHHTTTCT----TCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred EEeCCCccccccHHHHHhccCC----CCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999988899999998632 12345677888888885 34443 45899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
.+|++|||||||+|||+.+++.+++.|+++. + |+|||+||||++.+. .||++++|++|++++.|+++++...
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~ 233 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSE 233 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHTS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999984 3 899999999999886 5999999999999999999988653
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.7e-59 Score=422.31 Aligned_cols=218 Identities=30% Similarity=0.444 Sum_probs=193.5
Q ss_pred eEEEEeEEEEeC-CC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 63 KFRVRELRKESD-DG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~-~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+++++|++++|+ ++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .+++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 689999999995 23 4699999999999999999999999999999999999999999999999998532 5677
Q ss_pred ceEEEeCCC--CCCcccHHHHhHhCcccc-CCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 139 KVGMLFQIP--ALFEGTVVDNIRYGPQLR-GKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 139 ~ig~v~Q~~--~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
++||+||++ .+++.||+||+.++.... ......+++.++++.+|+.. ++.++++.+|||||||||+|||||+.+|+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 158 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPD 158 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 899999996 345579999999875432 11233567899999999961 47899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+++.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 159 lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 159 ILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999765 9999999999999999999999999999999999887743
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.8e-59 Score=428.72 Aligned_cols=222 Identities=28% Similarity=0.384 Sum_probs=194.9
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHh
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT--DLDVLSLR 137 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~--~~~~~~~~ 137 (298)
..++++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...++
T Consensus 18 ~~~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 345799999999995 568999999999999999999999999999999999999999999999999986 55666678
Q ss_pred cceEEEeCCCCC-Cc--ccHHHHhHhCccc----cCC-C-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 138 RKVGMLFQIPAL-FE--GTVVDNIRYGPQL----RGK-K-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 138 ~~ig~v~Q~~~l-~~--~tv~eni~~~~~~----~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
+++||+||++.+ +. .||+||+.++... ++. . ...+++.++++.+++. ++.++++.+|||||||||+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHH
Confidence 889999999854 33 3999999987421 111 1 1235688899999996 57899999999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEE--EEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTI--VMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~ti--i~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
|+.+|++|||||||+|||+.+++.+++.|++++++ |+|| |+||||++.+..+||++++|++|++++.|+++++..
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999766 8999 999999999999999999999999999999888754
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=9.3e-59 Score=417.02 Aligned_cols=215 Identities=32% Similarity=0.561 Sum_probs=190.8
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
|++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++++||
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 58999999999545679999999999999999999999999999999999999999999999999976554556788999
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhc-----------CCCCCCChhHHHHHHHHHHHcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN-----------KTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGqkQRv~iAral~~ 211 (298)
+||++.+|+.||+||+.++... ...++++.++++.+++. ++.+ +++.+|||||||||+|||||++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~---~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEG---DYTDEDLWQVLDLAFAR-SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTS---CSCHHHHHHHHHHHTCT-TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EcCCCccccccHHHHHhhhccC---CCCHHHHHHHHHHhChH-HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 9999999888999999986321 12356678889998886 3443 3467999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|++|||||||+|||+.+++.+++.|+++. + |+|||++|||++.+. .|||+++|++|++++.|+++++..
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999986 4 899999999999885 599999999999999999988754
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.8e-58 Score=416.89 Aligned_cols=217 Identities=30% Similarity=0.479 Sum_probs=186.6
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHH-hcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSL-RRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~-~~~ 139 (298)
+++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... ++.
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 699999999995 56899999999999999999999999999999999999 89999999999999977665444 456
Q ss_pred eEEEeCCCCCCcc-cHHHHhHhCcc-ccCC--C--ccHHHHHHHHHHcCCCchhhcCCCCC-CChhHHHHHHHHHHHcCC
Q 022337 140 VGMLFQIPALFEG-TVVDNIRYGPQ-LRGK--K--LTENEVYKLLSLADLDSSFLNKTGGE-ISVGQAQRVALARTLANE 212 (298)
Q Consensus 140 ig~v~Q~~~l~~~-tv~eni~~~~~-~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~~~~-LSgGqkQRv~iAral~~~ 212 (298)
++|+||++.+|+. ||+||+.++.. ..+. . ...+++.++++.++++.++.++++.+ |||||||||+|||||+.+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~ 161 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLE 161 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHC
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcC
Confidence 9999999998875 99999987642 1111 1 12356788999999953578899999 999999999999999999
Q ss_pred CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhh
Q 022337 213 PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDL 281 (298)
Q Consensus 213 p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~ 281 (298)
|++|||||||+|||+.+++.+++.|+++++ .|+|||+||||++.+..+ ||++++|++|++++.|+++.
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999865 489999999999999888 59999999999999999873
No 28
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.8e-57 Score=412.64 Aligned_cols=222 Identities=29% Similarity=0.459 Sum_probs=192.5
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
++++++||+++|+++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+...++++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 479999999999643 4699999999999999999999999999999999999987 8999999999977666677889
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
|||+||++.+|+.||+||+.++.. ...++++.++++.+++.+. ..++++.+|||||||||+|||||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~----~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL 170 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL----DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCL 170 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT----TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCC----CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHH
Confidence 999999999998899999998642 1234567778888877421 12456889999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+.+|++|||||||+|||+.+++.+++.|+++. + |+|||+||||++.+. .||++++|++|++++.|+++++......+
T Consensus 171 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 247 (260)
T 2ghi_A 171 LKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLKLNGEY 247 (260)
T ss_dssp HHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHHHTSHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhcChHH
Confidence 99999999999999999999999999999985 3 899999999999885 59999999999999999999886543444
Q ss_pred HH
Q 022337 290 AL 291 (298)
Q Consensus 290 ~~ 291 (298)
.+
T Consensus 248 ~~ 249 (260)
T 2ghi_A 248 AE 249 (260)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.3e-57 Score=411.34 Aligned_cols=212 Identities=24% Similarity=0.343 Sum_probs=193.6
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|++++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++...+...+++++|
T Consensus 3 ~~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 3 IVMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred cEEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 37999999975 5999999999999999999999999999999999999999 99999999987777667788899
Q ss_pred EEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC------
Q 022337 142 MLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE------ 214 (298)
Q Consensus 142 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~------ 214 (298)
|+||++.+|+. ||+||+.++... .. .++++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~-~~--~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~ 152 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHD-KT--RTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAG 152 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSS-TT--CHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTC
T ss_pred EECCCCccCCCCcHHHHHHHhhcc-CC--cHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 99999998874 999999987421 11 256788999999996 57899999999999999999999999999
Q ss_pred -eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 -VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 -illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+.+.|++++++ |+|||++|||++.+..+||++++|++|++++.|+++++..
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 153 QLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred eEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999765 8999999999999999999999999999999999888754
No 30
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.6e-56 Score=446.36 Aligned_cols=224 Identities=33% Similarity=0.518 Sum_probs=198.2
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..+++++|++++|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 3479999999999643 679999999999999999999999999999999999999999999999999988887888999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhc-----------CCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN-----------KTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.|++||+.++.. ...+++++.++++.++++ ++.+ +++.+||||||||++||||
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAra 494 (582)
T 3b5x_A 419 FALVSQNVHLFNDTIANNIAYAAE---GEYTREQIEQAARQAHAM-EFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494 (582)
T ss_pred eEEEcCCCccccccHHHHHhccCC---CCCCHHHHHHHHHHCCCH-HHHHhCcccccchhcCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999998741 123456788888888875 3333 3568999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
|+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+||||++.+. .||+|++|++|++++.|+++++.+....
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 571 (582)
T 3b5x_A 495 LLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQDGA 571 (582)
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 9999999999999999999999999999999853 899999999999986 6999999999999999999998764333
Q ss_pred HHH
Q 022337 289 MAL 291 (298)
Q Consensus 289 ~~~ 291 (298)
+.+
T Consensus 572 ~~~ 574 (582)
T 3b5x_A 572 YAQ 574 (582)
T ss_pred HHH
Confidence 433
No 31
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.4e-56 Score=446.62 Aligned_cols=224 Identities=31% Similarity=0.494 Sum_probs=198.5
Q ss_pred CCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..+++++|++++|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+.+..++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 3469999999999643 679999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.|++||+.++.. ...+++++.++++.++++ ++. ++++.+||||||||++||||
T Consensus 419 i~~v~Q~~~l~~~tv~eni~~~~~---~~~~~~~~~~~l~~~~l~-~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAra 494 (582)
T 3b60_A 419 VALVSQNVHLFNDTVANNIAYART---EEYSREQIEEAARMAYAM-DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 494 (582)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTT---SCCCHHHHHHHHHTTTCH-HHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred CeEEccCCcCCCCCHHHHHhccCC---CCCCHHHHHHHHHHcCCH-HHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999998741 123467788889988885 333 34568999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
|+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+||||++.+. .||||++|++|++++.|+++++.+....
T Consensus 495 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 571 (582)
T 3b60_A 495 LLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQHGV 571 (582)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred HHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHcCCH
Confidence 9999999999999999999999999999999864 899999999999885 6999999999999999999998654333
Q ss_pred HHH
Q 022337 289 MAL 291 (298)
Q Consensus 289 ~~~ 291 (298)
+.+
T Consensus 572 ~~~ 574 (582)
T 3b60_A 572 YAQ 574 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7.2e-57 Score=407.24 Aligned_cols=208 Identities=26% Similarity=0.353 Sum_probs=185.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
++++++|++++|++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. +++++|
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 3799999999995256899999999999999999999999999999999999999999998 246799
Q ss_pred EEeCCCCCCc-ccHHHHhHhCcccc-C----CC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLR-G----KK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~-~----~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
|+||++.+++ .||+||+.++.... + .. ...+++.++++.+++. ++.++++.+|||||||||+|||||+.+|+
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999998885 59999999874321 1 11 2245688999999996 57899999999999999999999999999
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+|||||||+|||+.+++.+++.|++++++.|+|||++|||++.+..+||++++|++|+ ++.|+++++..
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999976558999999999999999999999999999 99999888753
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.7e-57 Score=413.04 Aligned_cols=222 Identities=25% Similarity=0.387 Sum_probs=190.3
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHH-
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSL- 136 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~- 136 (298)
..++++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+....
T Consensus 17 ~~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp ---CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 345899999999994 56899999999999999999999999999999999999 57899999999999876665444
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCcc-c---cC---CCc--cHHHHHHHHHHcCCCchhhcCCCC-CCChhHHHHHHH
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQ-L---RG---KKL--TENEVYKLLSLADLDSSFLNKTGG-EISVGQAQRVAL 205 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~-~---~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkQRv~i 205 (298)
++.++|+||++.+|+. |+.||+.++.. . .+ ... ..+++.++++.+++...+.++++. +|||||||||+|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 3469999999998875 99999986431 1 11 111 134678899999996346788887 599999999999
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh-cCEEEEEeCCEEEEeeChhhhh
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI-ADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~-~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
||||+.+|++|||||||+|||+.+++.+++.|++++++ |+|||++|||++.+..+ |||+++|++|++++.|+++++.
T Consensus 176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 99999999999999999999999999999999998654 89999999999999876 9999999999999999988763
No 34
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-56 Score=446.57 Aligned_cols=225 Identities=30% Similarity=0.509 Sum_probs=197.5
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
...++++|++|+|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.+||+++.+.+..++|++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 346999999999963 3579999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral 209 (298)
+|||||++.+|+.|++||+.++.. ...++++.++++..++.+ ...++++.+||||||||++|||||
T Consensus 419 i~~v~Q~~~lf~~tv~eni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal 494 (587)
T 3qf4_A 419 ISAVPQETVLFSGTIKENLKWGRE----DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARAL 494 (587)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTCS----SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHH
T ss_pred eEEECCCCcCcCccHHHHHhccCC----CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999998742 223456666666666532 234677889999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+||||++.+. .||||++|++|++++.|+++++.+....+
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~~~~~ 571 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEHCKPY 571 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST--TCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHHCHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC--CCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence 999999999999999999999999999999843 899999999999985 79999999999999999999987643334
Q ss_pred HHH
Q 022337 290 ALR 292 (298)
Q Consensus 290 ~~~ 292 (298)
.+.
T Consensus 572 ~~~ 574 (587)
T 3qf4_A 572 REI 574 (587)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 35
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.3e-56 Score=445.41 Aligned_cols=225 Identities=35% Similarity=0.536 Sum_probs=198.6
Q ss_pred CCeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
...++++|++|+|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+.+..++|++
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 346999999999964 3579999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.||+||+.++.. ...++++.++++.+++. ++. ++++.+||||||||++||||
T Consensus 417 i~~v~Q~~~l~~~tv~eni~~~~~----~~~~~~~~~~~~~~~~~-~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAra 491 (578)
T 4a82_A 417 IGLVQQDNILFSDTVKENILLGRP----TATDEEVVEAAKMANAH-DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491 (578)
T ss_dssp EEEECSSCCCCSSBHHHHHGGGCS----SCCHHHHHHHHHHTTCH-HHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred eEEEeCCCccCcccHHHHHhcCCC----CCCHHHHHHHHHHhCcH-HHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999998742 23456777888888774 233 34457999999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
|+++|++||||||||+||+.+++.+.+.++++.+ ++|+|+||||++.+. .||||++|++|++++.|+++++......
T Consensus 492 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~el~~~~~~ 568 (578)
T 4a82_A 492 FLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQGA 568 (578)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTTSH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 9999999999999999999999999999998853 789999999999986 5999999999999999999998765444
Q ss_pred HHHHH
Q 022337 289 MALRF 293 (298)
Q Consensus 289 ~~~~~ 293 (298)
+.+.+
T Consensus 569 ~~~~~ 573 (578)
T 4a82_A 569 YEHLY 573 (578)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 36
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.7e-56 Score=449.11 Aligned_cols=222 Identities=31% Similarity=0.549 Sum_probs=197.1
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
..++++|++|+|++++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+.+..++|+++|
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 45999999999975668999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCC-----------CCCChhHHHHHHHHHHHc
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTG-----------GEISVGQAQRVALARTLA 210 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~~LSgGqkQRv~iAral~ 210 (298)
||||++.+|+.||+||+.++.. ..+++++.++++.++++ ++.++.| .+||||||||++|||||+
T Consensus 433 ~v~Q~~~lf~~tv~eni~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 433 IVLQDTILFSTTVKENLKYGNP----GATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp EECTTCCCCSSBHHHHHHSSST----TCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEeCCCccccccHHHHHhcCCC----CCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998742 12345577777777774 3444443 799999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPMA 290 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~~ 290 (298)
++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+||||++.+.. ||+|++|++|++++.|+++++.+....+.
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 584 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGKHDELIQKRGFYY 584 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSEEEEESCCTTHHHH-CSEEEEECSSSEEECSCHHHHHHTTCHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhCCCHHH
Confidence 99999999999999999999999999999853 8999999999999865 99999999999999999999876544343
Q ss_pred H
Q 022337 291 L 291 (298)
Q Consensus 291 ~ 291 (298)
+
T Consensus 585 ~ 585 (598)
T 3qf4_B 585 E 585 (598)
T ss_dssp H
T ss_pred H
Confidence 3
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-56 Score=428.45 Aligned_cols=225 Identities=26% Similarity=0.428 Sum_probs=200.3
Q ss_pred CCeEEEEeEEEEeC-CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 61 KPKFRVRELRKESD-DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 61 ~~~l~~~~l~~~y~-~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
...|+++||+|+|+ ++..+|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++...+...+++.
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 34699999999995 34679999999999999999999999999999999999998 99999999999988888778889
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCC-----------CChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGE-----------ISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.||+||+.+.. ...++++.++++.+++. ++.++++.+ |||||||||+||||
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~-----~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNA-----AHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTC-----CSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCcccCccCHHHHhhhcc-----ccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 99999999999999999997532 12456788999999996 688999988 99999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc-cCC
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE-AKH 287 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~-~~~ 287 (298)
|+.+|++||||||||+||+..+..+++.|+++. .++|+|+||||++.+ ..||||++|++|+|++.|+++++.. +.+
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g~~~el~~~p~~ 246 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYPAD 246 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-TTCSEEEEEETTEEEEESSHHHHHHCCSB
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCCc
Confidence 999999999999999999999999999999864 379999999998765 5699999999999999999999865 345
Q ss_pred hHHHHHhh
Q 022337 288 PMALRFLQ 295 (298)
Q Consensus 288 ~~~~~~~~ 295 (298)
.+...|.+
T Consensus 247 ~~va~f~g 254 (390)
T 3gd7_A 247 RFVAGFIG 254 (390)
T ss_dssp HHHHHHSS
T ss_pred hHHHhhcC
Confidence 55555543
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.7e-55 Score=440.03 Aligned_cols=218 Identities=36% Similarity=0.607 Sum_probs=193.0
Q ss_pred Ce-EEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 62 PK-FRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 62 ~~-l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
.. ++++|++++|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+.+..++|+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 418 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 418 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHh
Confidence 35 9999999999643 46999999999999999999999999999999999999999999999999998888888889
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHH
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAr 207 (298)
++|||||++.+|+.||+||+.++.... ...+++++.++++.++++ ++. ++++.+||||||||++|||
T Consensus 419 ~i~~v~Q~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 419 KIGTVSQEPILFSCSIAENIAYGADDP-SSVTAEEIQRVAEVANAV-AFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp SEEEECSSCCCCSSBHHHHHHTTSSST-TTSCHHHHHHHHHHTTCH-HHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred ceEEEccCCcccCCCHHHHHhhcCCCc-cccCHHHHHHHHHHcCCH-HHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 999999999999899999999975321 123467788999999874 232 3345899999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|+||||++.+. .||||++|++|++++.|+++++.+
T Consensus 497 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 497 ALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIK-NANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECSCC---
T ss_pred HHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999864 799999999999986 599999999999999999998865
No 39
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.2e-56 Score=403.78 Aligned_cols=210 Identities=24% Similarity=0.365 Sum_probs=188.0
Q ss_pred eEEEEeEEEEeCCC---CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDG---APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~---~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
|++++|++++|+++ +++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... .. +++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~ 75 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIR 75 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTT
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhh
Confidence 58999999999531 679999999999 9999999999999999999999999 9999999999998643 23 678
Q ss_pred eE-EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VG-MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+| |+||++.+ ..|++||+.++...+ ....+++.++++.+++..++.++++.+|||||||||+|||||+.+|++|||
T Consensus 76 i~~~v~Q~~~l-~~tv~enl~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 76 YSTNLPEAYEI-GVTVNDIVYLYEELK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp EEECCGGGSCT-TSBHHHHHHHHHHHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred eEEEeCCCCcc-CCcHHHHHHHhhhhc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99 99999988 779999999864332 234567899999999962478999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC-EEEEEeCCEEEEeeChhhhhc
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD-VVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d-~v~vl~~G~i~~~g~~~~~~~ 284 (298)
||||++||+.+++.+++.|+++. . |||++|||++.+..+|| ++++|++|++++.|+++++.+
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred ECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999874 2 99999999999999999 999999999999999988753
No 40
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4e-55 Score=390.16 Aligned_cols=203 Identities=25% Similarity=0.432 Sum_probs=173.9
Q ss_pred CeEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 62 PKFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 62 ~~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.+++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 47999999999953 46799999999999999999999999999999999999999999999998 39
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHHc
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
+|+||++.+|+.||+||+.++... ...+..+.++.+++.+. ..++++.+|||||||||+|||||+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~ 146 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSY-----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVY 146 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCC-----CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCHHHHhhccCCc-----ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHh
Confidence 999999999888999999987421 12234445555555311 123346899999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhcc
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l-~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 285 (298)
++|++|||||||+|||+.+++.+++.+ .++. + |+|||++|||++.+. .||++++|++|++++.|+++++...
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHTC
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999974 5553 3 789999999999886 5999999999999999999988653
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-56 Score=395.29 Aligned_cols=202 Identities=27% Similarity=0.428 Sum_probs=178.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
..+|+++|++++|+ + ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .+++.+
T Consensus 8 ~~~l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp -CEEEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred CceEEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 34799999999995 5 8999999999999999999999999999999999999999999999999875 256789
Q ss_pred EEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|+||++.+|+. ||+||+.++...++.....+++.++++.++++ +. ++++.+|||||||||+|||||+.+|++||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999998875 99999998643322112356788999999997 46 8999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
|||+|||+.+++.+++.|+++.++ |+|||++|||++.+..+||+++++ +|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999999999999765 899999999999999999998754 5665
No 42
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.8e-55 Score=392.30 Aligned_cols=208 Identities=27% Similarity=0.413 Sum_probs=174.9
Q ss_pred eEEEEeEEEEeCC-CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 63 KFRVRELRKESDD-GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 63 ~l~~~~l~~~y~~-~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
+++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 5999999999953 46799999999999999999999999999999999999999999999998 399
Q ss_pred EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCC------c----hhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 142 MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLD------S----SFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 142 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~------~----~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
|+||++.++..||+||+.++.... . +...++++.+++. + ...++++.+|||||||||+|||||+.
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~~--~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 144 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQLE--E---PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 144 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCCC--T---THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCcCCCcCHHHHhhCccccC--H---HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999877779999999875321 1 1222333333321 1 12467899999999999999999999
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHH---HHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLV---KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~---~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
+|++|||||||+|||+.+++.+++.|. ++. .|+|||++|||++.+. +||++++|++|++++.|+++++......
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 221 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLARDGA 221 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHHHTSH
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhhccHH
Confidence 999999999999999999999999995 343 3899999999999875 7999999999999999999988654444
Q ss_pred HHH
Q 022337 289 MAL 291 (298)
Q Consensus 289 ~~~ 291 (298)
+..
T Consensus 222 ~~~ 224 (237)
T 2cbz_A 222 FAE 224 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.3e-55 Score=471.40 Aligned_cols=224 Identities=31% Similarity=0.544 Sum_probs=199.3
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..|+++||+|+|+++ .+||+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~ 1154 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTT
T ss_pred CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 359999999999643 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
|++|||+|.+|++|++|||.|+... ...+++++.++++.+++++. .....+.+||||||||++|||||
T Consensus 1155 i~~V~Qdp~LF~gTIreNI~~gld~--~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1155 IAIVSQEPTLFDCSIAENIIYGLDP--SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHSSSSCT--TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEECCCCEeeCccHHHHHhccCCC--CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 9999999999999999999998532 23467889999999988531 12345678999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCChH
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHPM 289 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~~ 289 (298)
+++|+|||||||||+||+.+.+.+.+.|+++.+ |+|+|+|+|+++.+.. ||||+||++|+|+|.|+++++.+....+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE~Gth~eLl~~~g~y 1309 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRARE--GRTCIVIAHRLNTVMN-ADCIAVVSNGTIIEKGTHTQLMSEKGAY 1309 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SSEEEEECSSSSTTTT-CSEEEEESSSSEEEEECHHHHHHCC---
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CCEEEEeccCHHHHHh-CCEEEEEECCEEEEECCHHHHHhCCcHH
Confidence 999999999999999999999999999998754 8999999999999965 9999999999999999999998754334
Q ss_pred H
Q 022337 290 A 290 (298)
Q Consensus 290 ~ 290 (298)
.
T Consensus 1310 ~ 1310 (1321)
T 4f4c_A 1310 Y 1310 (1321)
T ss_dssp -
T ss_pred H
Confidence 3
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.8e-53 Score=458.71 Aligned_cols=219 Identities=33% Similarity=0.547 Sum_probs=199.4
Q ss_pred CeEEEEeEEEEeCC--CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDD--GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~--~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..|+++|++|+|++ ++++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+++++...+|++
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 35999999999964 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCch----------hhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSS----------FLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkQRv~iAral 209 (298)
||||+|+|.+|+.|++|||.||.. ..+++++.++++.++++++ .....+..||||||||++||||+
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~~----~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGKE----GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT----TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHH
T ss_pred ccccCCcceeeCCchhHHHhhhcc----cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999842 3457889999998887532 23456789999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCC
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKH 287 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~ 287 (298)
+++|+|||||||||+||+.+++.+.+.|.++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++++.+...
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~Gth~eL~~~~g 644 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTIR-NADLIISCKNGQVVEVGDHRALMAQQG 644 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTTT-TCSEEEEEETTEEEEEECHHHHHTTTC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHHH-hCCEEEEeeCCeeeccCCHHHHHHhhh
Confidence 999999999999999999999999999999865 899999999999885 599999999999999999999876433
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.1e-51 Score=441.77 Aligned_cols=218 Identities=35% Similarity=0.589 Sum_probs=194.1
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++|++|+|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++..++...+|++
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 459999999999643 369999999999999999999999999999999999999999999999999999999899999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCc----------hhhcCCCCCCChhHHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDS----------SFLNKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkQRv~iAral 209 (298)
||||||+|.+|+.||+|||.++.. ...++++.++++..++.+ ...++.+.+|||||||||+|||||
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCS----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred eEEEcCCCccCCccHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 999999999999999999999743 234566777777666532 123456779999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccC
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAK 286 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~ 286 (298)
+++|+|||||||||+||+.+++.+.+.++++.+ |+|+|+||||++.+.. ||+|++|++|+|++.|+++++....
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCHHHHTT-CSEEEECSSSCCCCEECHHHHHHTT
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHc-CCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999988753 8999999999999965 9999999999999999999986543
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4.3e-51 Score=439.33 Aligned_cols=224 Identities=34% Similarity=0.594 Sum_probs=196.1
Q ss_pred CeEEEEeEEEEeCCC--CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 62 PKFRVRELRKESDDG--APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~--~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+...+|++
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 469999999999643 369999999999999999999999999999999999999999999999999999998889999
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHH
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALART 208 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAra 208 (298)
+|||||++.+|+.||+||+.++.... ..+++++.++++..++. ++. .+.+.+|||||||||+||||
T Consensus 1109 i~~v~Q~~~l~~~ti~eNi~~~~~~~--~~~~~~i~~~~~~~~~~-~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A 1109 LGIVSQEPILFDCSIAENIAYGDNSR--VVSYEEIVRAAKEANIH-QFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp CEEEESSCCCCSSBHHHHHTCCCSSC--CCCHHHHHHHHHHHTCH-HHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred eEEECCCCccccccHHHHHhccCCCC--CCCHHHHHHHHHHhCcH-HHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999875321 22456677777777764 222 23457899999999999999
Q ss_pred HcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhccCCh
Q 022337 209 LANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSEAKHP 288 (298)
Q Consensus 209 l~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~~~~ 288 (298)
|+++|+||||||||++||+.+++.+.+.|+++. .|+|+|+||||++.+. .||||++|++|+|++.|+++++.+....
T Consensus 1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~~~~l~~~~g~ 1262 (1284)
T 3g5u_A 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGTHQQLLAQKGI 1262 (1284)
T ss_dssp HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEECHHHHHHSCSH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCCCH
Confidence 999999999999999999999999999998864 3899999999999985 4999999999999999999998765444
Q ss_pred HHH
Q 022337 289 MAL 291 (298)
Q Consensus 289 ~~~ 291 (298)
+.+
T Consensus 1263 y~~ 1265 (1284)
T 3g5u_A 1263 YFS 1265 (1284)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.6e-51 Score=379.10 Aligned_cols=198 Identities=24% Similarity=0.405 Sum_probs=158.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.+ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++
T Consensus 38 ~~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp ------------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred CceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 4579999999853 4799999999999999999999999999999999999999999999987 48
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhh-----------cCCCCCCChhHHHHHHHHHHH
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFL-----------NKTGGEISVGQAQRVALARTL 209 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGqkQRv~iAral 209 (298)
+|+||++.+|+.||+||+. +... ...+..++++.+++.+ .. ++++.+|||||||||+|||||
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~-----~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL 174 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSY-----DEYRYRSVIKACQLEE-DISKFAEKDNIVLGEGGITLSGGQRARISLARAV 174 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCC-----CHHHHHHHHHHTTCHH-HHHTSTTGGGCBC----CCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCccCcccHHHHhh-Cccc-----chHHHHHHHHHhChHH-HHHhccccccchhcCccCcCCHHHHHHHHHHHHH
Confidence 9999999998889999998 5321 1233445566666632 22 234579999999999999999
Q ss_pred cCCCCeEEEeCcCCCCCHHHHHHHHHHH-HHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhhc
Q 022337 210 ANEPEVLLLDEPTSALDPISTQNIEDVL-VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLSE 284 (298)
Q Consensus 210 ~~~p~illLDEPts~LD~~~~~~~~~~l-~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 284 (298)
+.+|++|||||||+|||+.++..+++.+ .++. + |+|||++|||++.+. .||++++|++|++++.|+++++..
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~-~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 175 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-C-CCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999999974 4553 3 899999999999885 699999999999999999988754
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8.2e-47 Score=378.81 Aligned_cols=206 Identities=27% Similarity=0.323 Sum_probs=180.8
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.++++++|+++.|+ + ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ +.++
T Consensus 355 ~~~l~~~~l~~~~~-~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG-S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp CEEEEECCEEEECS-S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred ceEEEEeceEEEec-c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 45899999999994 3 4799999999999999999999999999999999999999999975 2469
Q ss_pred EEEeCCCCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||+||++.++ +.||.|++...... . ....+++.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~-~-~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSS-K-LNSNFYKTELLKPLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHH-H-HHCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEecCccCCCCCcHHHHHHhhhcc-C-CCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 9999998765 46999998753110 0 01245678899999996 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChhhhhc
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLSE 284 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~~~~~ 284 (298)
|||+|||+.++..++++|++++++.|.|||+||||++++..+|||+++|++ |++...|+++++..
T Consensus 497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999765689999999999999999999999986 88888899887654
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=6.7e-47 Score=375.05 Aligned_cols=207 Identities=27% Similarity=0.327 Sum_probs=180.3
Q ss_pred CCCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 60 QKPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
..++++++|+++.|+ + ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+ ..+
T Consensus 284 ~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~ 348 (538)
T 1yqt_A 284 RETLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLT 348 (538)
T ss_dssp CCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCC
T ss_pred CCeEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------Cce
Confidence 346899999999994 3 4799999999999999999999999999999999999999999975 136
Q ss_pred eEEEeCCCCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 140 VGMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 140 ig~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+||+||++..+ ..||.|++...... .. ...+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 349 i~~v~Q~~~~~~~~tv~~~~~~~~~~-~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlL 425 (538)
T 1yqt_A 349 VAYKPQYIKADYEGTVYELLSKIDAS-KL-NSNFYKTELLKPLGII-DLYDREVNELSGGELQRVAIAATLLRDADIYLL 425 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHHH-HH-TCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred EEEEecCCcCCCCCcHHHHHHhhhcc-CC-CHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999998764 45999988753110 00 1245678899999996 678999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChhhhhc
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLSE 284 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~~~~~ 284 (298)
||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++ |+++..|+++++..
T Consensus 426 DEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 426 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999998755589999999999999999999999996 78888899877653
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-46 Score=371.22 Aligned_cols=206 Identities=22% Similarity=0.269 Sum_probs=177.2
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
.+.++++|+++.|+ + ..|++.||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ +.+
T Consensus 267 ~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG-D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp CEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred cceEEEcceEEEEC-C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 45799999999994 3 578889999999999999999999999999999999999999998654 358
Q ss_pred EEEeCCCCCC-cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 141 GMLFQIPALF-EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 141 g~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+|+||+.... ..||.+|+.+..... .......+.++++.+++. ++.++++.+|||||||||+|||||+.+|++||||
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLD 410 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDA-LSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLD 410 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSST-TCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred EeechhcccccCCCHHHHHHHhhhhc-cchhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999987654 469999998742211 112234577889999996 5789999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChhhh
Q 022337 220 EPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLL 282 (298)
Q Consensus 220 EPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~~~ 282 (298)
|||+|||+.++..++++|++++++.|+|||+||||++++..+||||++|++ |.+...+++.++
T Consensus 411 EPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 411 QPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999999999999999876799999999999999999999999986 555555665443
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-45 Score=364.69 Aligned_cols=203 Identities=22% Similarity=0.278 Sum_probs=175.2
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 67 RELRKESDDGAPILKGVNMEIPKG-----VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~G-----e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
+++++.|++...+++++||++.+| |++||+||||||||||+|+|+|+++|++|+. +. +..++
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVS 416 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEE
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEE
Confidence 567788864456899999999999 8899999999999999999999999999962 21 24699
Q ss_pred EEeCCCCC-CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 142 MLFQIPAL-FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 142 ~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
|+||+... ++.||.+++..... ......+.+.++++.+++. ++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 417 ~~~q~~~~~~~~tv~e~~~~~~~--~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE 493 (608)
T 3j16_B 417 MKPQKIAPKFPGTVRQLFFKKIR--GQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDE 493 (608)
T ss_dssp EECSSCCCCCCSBHHHHHHHHCS--STTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred EecccccccCCccHHHHHHHHhh--cccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999764 45699999865322 1122345677899999997 58899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC--CEEEEeeChhhhhcc
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN--GEIVEVLKPDLLSEA 285 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~--G~i~~~g~~~~~~~~ 285 (298)
||+|||+.++..++++|+++.++.|+|||+||||++++..+||||++|++ |+++..|+|+++...
T Consensus 494 PT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 494 PSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999998755699999999999999999999999996 899999999887653
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.6e-45 Score=366.87 Aligned_cols=199 Identities=21% Similarity=0.334 Sum_probs=167.1
Q ss_pred eEEE--------EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE---------EECC
Q 022337 63 KFRV--------RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV---------FLDG 125 (298)
Q Consensus 63 ~l~~--------~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I---------~i~g 125 (298)
+|++ +|++++|++...+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5888 889999953325999999 999999999999999999999999999999999996 3456
Q ss_pred EeCCCCCHH--HHhcceEEEeCCCCC----CcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH
Q 022337 126 RDITDLDVL--SLRRKVGMLFQIPAL----FEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ 199 (298)
Q Consensus 126 ~~i~~~~~~--~~~~~ig~v~Q~~~l----~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 199 (298)
.++...... ..+..+++++|+... +..|+.||+.... ..+++.++++.+|+. ++.++++.+|||||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~-------~~~~~~~~L~~lgL~-~~~~~~~~~LSGGe 233 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-------EVGKFEEVVKELELE-NVLDRELHQLSGGE 233 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC-------CSSCHHHHHHHTTCT-TGGGSBGGGCCHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH-------HHHHHHHHHHHcCCC-chhCCChhhCCHHH
Confidence 544221111 113468899997532 3349999997421 123477899999997 57899999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 200 AQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 200 kQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
||||+|||||+.+|++|||||||++||+.++..++++|+++.++ |+|||+||||++.+..+||||++|+++
T Consensus 234 kQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 234 LQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999999999999764 999999999999999999999999865
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.6e-45 Score=362.71 Aligned_cols=198 Identities=21% Similarity=0.338 Sum_probs=162.9
Q ss_pred EEE-EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE---------EECCEeCCCCCH
Q 022337 64 FRV-RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV---------FLDGRDITDLDV 133 (298)
Q Consensus 64 l~~-~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I---------~i~g~~i~~~~~ 133 (298)
.++ +||+|+|++...+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 589999953325899999 999999999999999999999999999999999995 345554321100
Q ss_pred HH--HhcceEEEeCCCCCCc----ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 134 LS--LRRKVGMLFQIPALFE----GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 134 ~~--~~~~ig~v~Q~~~l~~----~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.. .+..+++++|+..+++ .|+.+++.... ..+++.++++.+|+. +..++++.+|||||||||+|||
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-------~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAr 171 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-------ETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAA 171 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-------SSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-------HHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHH
Confidence 11 1245899999764432 48999886421 123477899999997 5789999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
||+.+|++|||||||++||+.+++.++++|+++.++ |+|||+||||++++..+||||++|++|
T Consensus 172 aL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 172 ALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999764 999999999999999999999999864
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.6e-44 Score=371.38 Aligned_cols=204 Identities=24% Similarity=0.370 Sum_probs=163.0
Q ss_pred CCCeEEEEeEEEEeCCC-CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 60 QKPKFRVRELRKESDDG-APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 60 ~~~~l~~~~l~~~y~~~-~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
..++++++|++++|+++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|. .
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~ 736 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------C 736 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------C
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------c
Confidence 35689999999999642 57999999999999999999999999999999999999999999999862 1
Q ss_pred ceEEEeCCCCC-----CcccHHHHhHh-----------------------------------------------------
Q 022337 139 KVGMLFQIPAL-----FEGTVVDNIRY----------------------------------------------------- 160 (298)
Q Consensus 139 ~ig~v~Q~~~l-----~~~tv~eni~~----------------------------------------------------- 160 (298)
++||++|++.. ...|+.+++.+
T Consensus 737 ~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~ 816 (986)
T 2iw3_A 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYE 816 (986)
T ss_dssp CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEE
T ss_pred ceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccch
Confidence 25555554310 11233333321
Q ss_pred -------------Cccc-----------------------------------cC--CCccHHHHHHHHHHcCCCchh-hc
Q 022337 161 -------------GPQL-----------------------------------RG--KKLTENEVYKLLSLADLDSSF-LN 189 (298)
Q Consensus 161 -------------~~~~-----------------------------------~~--~~~~~~~~~~~l~~~~l~~~~-~~ 189 (298)
+... .+ .....+++.++++.+|+...+ .+
T Consensus 817 ~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~ 896 (986)
T 2iw3_A 817 YECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSH 896 (986)
T ss_dssp EEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred hhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcC
Confidence 1000 00 011245688899999997444 58
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
+++.+|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++ +.|||+||||++++..+||++++|+
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~e~v~~l~DrVivL~ 972 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAEFTKNLTEEVWAVK 972 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCHHHHTTTCCEEECCB
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 899999999999999999999999999999999999999999999988764 5699999999999999999999999
Q ss_pred CCEEEEeeC
Q 022337 270 NGEIVEVLK 278 (298)
Q Consensus 270 ~G~i~~~g~ 278 (298)
+|+++..|+
T Consensus 973 ~G~Iv~~G~ 981 (986)
T 2iw3_A 973 DGRMTPSGH 981 (986)
T ss_dssp TTBCCC---
T ss_pred CCEEEEeCC
Confidence 999987664
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.3e-43 Score=359.72 Aligned_cols=206 Identities=26% Similarity=0.394 Sum_probs=145.2
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHhcCCCCC-------ccEEEECCEe
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLL---------------------RALNRLWEPP-------SGTVFLDGRD 127 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLl---------------------k~l~gl~~p~-------~G~I~i~g~~ 127 (298)
+.++|+||||+|++||++||+||||||||||+ +++.|+.+|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 9999999998 5566666655
Q ss_pred CCCCCHHHHhcceEEEeCCCCC-------------------Cc-ccHHHHhHhCccccCCC--c--cH------HHHHHH
Q 022337 128 ITDLDVLSLRRKVGMLFQIPAL-------------------FE-GTVVDNIRYGPQLRGKK--L--TE------NEVYKL 177 (298)
Q Consensus 128 i~~~~~~~~~~~ig~v~Q~~~l-------------------~~-~tv~eni~~~~~~~~~~--~--~~------~~~~~~ 177 (298)
.... .++.+|+++|.+.+ ++ .||+||+.+........ . .. .+..++
T Consensus 110 ~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 110 TSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF 185 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred hhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 4321 13445555554332 23 48999998742211000 0 00 112245
Q ss_pred HHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH
Q 022337 178 LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI 255 (298)
Q Consensus 178 l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~ 255 (298)
++.+|+.+...++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|++++++ |.|||+||||+
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~ 264 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDE 264 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence 8889996434689999999999999999999999998 99999999999999999999999999764 99999999999
Q ss_pred HHHHhhcCEEEEE------eCCEEEEeeChhhhhccCC
Q 022337 256 KQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKH 287 (298)
Q Consensus 256 ~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~~~ 287 (298)
+.+. .||+|++| ++|++++.|+++++.....
T Consensus 265 ~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 265 DTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 9875 69999999 8999999999998865433
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.8e-42 Score=354.57 Aligned_cols=197 Identities=21% Similarity=0.277 Sum_probs=169.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
.+...|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+... +.+++|
T Consensus 435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~~ 499 (986)
T 2iw3_A 435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTVY 499 (986)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEEE
T ss_pred eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEEE
Confidence 477779999994 5689999999999999999999999999999999996 554 4543311 124789
Q ss_pred EeCCC-CCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeC
Q 022337 143 LFQIP-ALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDE 220 (298)
Q Consensus 143 v~Q~~-~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDE 220 (298)
++|++ .+++ .|+.||+.+. ..+ . ++++.++++.+|+..++.++++.+|||||||||+|||||+.+|++|||||
T Consensus 500 v~q~~~~~~~~ltv~e~l~~~--~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE 574 (986)
T 2iw3_A 500 VEHDIDGTHSDTSVLDFVFES--GVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE 574 (986)
T ss_dssp TTCCCCCCCTTSBHHHHHHTT--CSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred EcccccccccCCcHHHHHHHh--hcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99985 4555 5999999862 222 1 56789999999996457899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE-EeeChhhhh
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV-EVLKPDLLS 283 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~-~~g~~~~~~ 283 (298)
||++||+.+++.+.+.|++ .|.|+|+||||++++..+||++++|++|+++ ..|+++++.
T Consensus 575 PTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 575 PTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 9999999999999999987 2899999999999999999999999999997 578888764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.6e-41 Score=344.44 Aligned_cols=210 Identities=28% Similarity=0.347 Sum_probs=161.0
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh----------------------cCCCCCccEEEECCEeCCCCCHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN----------------------RLWEPPSGTVFLDGRDITDLDVL 134 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~----------------------gl~~p~~G~I~i~g~~i~~~~~~ 134 (298)
..+|+||||+|++||++||+||||||||||+++|+ |+..+ .|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998764 44333 46899998887543210
Q ss_pred HH-----------------------------------------hcceEEEeCCCCCC-----------------------
Q 022337 135 SL-----------------------------------------RRKVGMLFQIPALF----------------------- 150 (298)
Q Consensus 135 ~~-----------------------------------------~~~ig~v~Q~~~l~----------------------- 150 (298)
.. ....|+++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 00 00124444433222
Q ss_pred ----------cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC---CeEE
Q 022337 151 ----------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP---EVLL 217 (298)
Q Consensus 151 ----------~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p---~ill 217 (298)
..|+.||+.+... ....++..+.++.+++.....++++.+|||||||||+|||||+.+| ++||
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~lll 569 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS----IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYI 569 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT----CHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH----hhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEE
Confidence 2488899887542 1223456778888999644568899999999999999999999887 5999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhccCChHHH
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEAKHPMAL 291 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~~~~~~~ 291 (298)
|||||+|||+.++..++++|++++++ |+|||+||||++.+ .+||||++| ++|+|++.|+++++.+....+..
T Consensus 570 lDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~~~ 647 (670)
T 3ux8_A 570 LDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG 647 (670)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTCHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCccHHH
Confidence 99999999999999999999999765 99999999999987 569999999 89999999999998654444443
Q ss_pred HH
Q 022337 292 RF 293 (298)
Q Consensus 292 ~~ 293 (298)
.|
T Consensus 648 ~~ 649 (670)
T 3ux8_A 648 RY 649 (670)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-42 Score=342.81 Aligned_cols=198 Identities=20% Similarity=0.322 Sum_probs=155.1
Q ss_pred eEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEE-----------ECCEeCCCCCHHHH
Q 022337 68 ELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-----------LDGRDITDLDVLSL 136 (298)
Q Consensus 68 ~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~-----------i~g~~i~~~~~~~~ 136 (298)
|++++|+++...|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. +.|.++..+.....
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 45788865556788877 5999999999999999999999999999999999982 33322211111112
Q ss_pred hcce--EEEeCCCCCC------c-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 137 RRKV--GMLFQIPALF------E-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 137 ~~~i--g~v~Q~~~l~------~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.+.+ .+.+|....+ + .++.+++.... ....+++.++++.+++. +..++++.+|||||||||+|||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-----~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGe~Qrv~iAr 234 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-----EKSPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGM 234 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-----CSCHHHHHHHHHHHTCT-GGGGSCTTTCCHHHHHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-----hhHHHHHHHHHHHcCCc-chhCCChHHCCHHHHHHHHHHH
Confidence 2233 2334432211 1 14555554321 22356788999999997 5789999999999999999999
Q ss_pred HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 208 TLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 208 al~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
||+.+|++|||||||++||+.++..+.++|+++.++ |+|||+||||++++..+||||++|++|..
T Consensus 235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999764 89999999999999999999999998653
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.9e-42 Score=338.92 Aligned_cols=194 Identities=22% Similarity=0.325 Sum_probs=153.4
Q ss_pred eEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-----------EECCEeCCCCCHHHH
Q 022337 68 ELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-----------FLDGRDITDLDVLSL 136 (298)
Q Consensus 68 ~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-----------~i~g~~i~~~~~~~~ 136 (298)
+.+.+|+.+...|.++.. +++||++||+||||||||||+|+|+|+++|++|+| .++|+++..+.....
T Consensus 4 ~~~~~~~~~~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTSCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 466788654444444443 46999999999999999999999999999999998 567766532111111
Q ss_pred h--cceEEEeCC----CCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 137 R--RKVGMLFQI----PALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 137 ~--~~ig~v~Q~----~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
. ..+...+|. +.++..++.+++.... ..+++.++++.+++. .+.++++.+|||||||||+|||||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-------~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~ 154 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKID-------ERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLL 154 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC-------CSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcch-------hHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHH
Confidence 1 123344443 3345568888765321 123467889999996 5789999999999999999999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
.+|++|||||||++||+.++..+.++|+++.+ |+|||+||||++++..+||+|++|++|.
T Consensus 155 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 155 READVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999999999999999999953 8999999999999999999999998754
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=2.3e-38 Score=326.15 Aligned_cols=226 Identities=25% Similarity=0.338 Sum_probs=168.9
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HhcCC-------CC----------------
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRA-LNRLW-------EP---------------- 116 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~-l~gl~-------~p---------------- 116 (298)
.+.|+++|+++ .+|+|+||+|++||++||+|+||||||||++. |+|++ +|
T Consensus 500 ~~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 500 AGWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp SCEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred CceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 45799999985 26999999999999999999999999999997 77554 23
Q ss_pred --Ccc-------EEEECCEeCCCCCH----------HHHh---------cceEEEeC----------------------C
Q 022337 117 --PSG-------TVFLDGRDITDLDV----------LSLR---------RKVGMLFQ----------------------I 146 (298)
Q Consensus 117 --~~G-------~I~i~g~~i~~~~~----------~~~~---------~~ig~v~Q----------------------~ 146 (298)
.+| .|.++|.++...+. ..+| +..||.++ +
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 467 68899988754321 1111 11223222 1
Q ss_pred CCCC------------------------c-ccHHHHhHhCcc----ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCCh
Q 022337 147 PALF------------------------E-GTVVDNIRYGPQ----LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197 (298)
Q Consensus 147 ~~l~------------------------~-~tv~eni~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 197 (298)
..++ . .++.||+.+... +.......+++.++++.++|.....++++.+|||
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSG 733 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSG 733 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCH
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccCCH
Confidence 1111 1 255555543210 0111122346788999999963246889999999
Q ss_pred hHHHHHHHHHHHcCC---CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------
Q 022337 198 GQAQRVALARTLANE---PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------ 268 (298)
Q Consensus 198 GqkQRv~iAral~~~---p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------ 268 (298)
||||||+|||+|+.+ |++|||||||+|||+..++.++++|++++++ |.|||+||||++++ ..||||++|
T Consensus 734 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvisHdl~~i-~~aDrii~L~p~~g~ 811 (842)
T 2vf7_A 734 GEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAVEHKMQVV-AASDWVLDIGPGAGE 811 (842)
T ss_dssp HHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEECSSSGG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCCEEEEECCCCCC
Confidence 999999999999996 7999999999999999999999999999764 99999999999999 689999999
Q ss_pred eCCEEEEeeChhhhhccCChHHHHHh
Q 022337 269 VNGEIVEVLKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 269 ~~G~i~~~g~~~~~~~~~~~~~~~~~ 294 (298)
++|+|++.|+++++......+...|+
T Consensus 812 ~~G~Iv~~g~~~el~~~~~~~t~~~l 837 (842)
T 2vf7_A 812 DGGRLVAQGTPAEVAQAAGSVTAPYL 837 (842)
T ss_dssp GCCSEEEEECHHHHTTCTTCSSHHHH
T ss_pred CCCEEEEEcCHHHHHhCchhHHHHHH
Confidence 79999999999998654333443443
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-38 Score=328.13 Aligned_cols=222 Identities=27% Similarity=0.390 Sum_probs=169.4
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHhcCCCCC------cc------EE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLL---------RALNRLWEPP------SG------TV 121 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLl---------k~l~gl~~p~------~G------~I 121 (298)
.+++++.+ ...|+|+||+|++|++++|+||||||||||+ +++.+...+. +| .+
T Consensus 589 ~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i 662 (916)
T 3pih_A 589 SLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMI 662 (916)
T ss_dssp EEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEE
T ss_pred eEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceE
Confidence 45555543 3579999999999999999999999999997 4444443332 33 35
Q ss_pred EECCEeCCCCCH---H-------HH-------------------------------hcceEEEeCCCCCCc---------
Q 022337 122 FLDGRDITDLDV---L-------SL-------------------------------RRKVGMLFQIPALFE--------- 151 (298)
Q Consensus 122 ~i~g~~i~~~~~---~-------~~-------------------------------~~~ig~v~Q~~~l~~--------- 151 (298)
.++..++...+. . .. .+..|+++++..+++
T Consensus 663 ~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c 742 (916)
T 3pih_A 663 AIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVC 742 (916)
T ss_dssp EECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTT
T ss_pred eeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccc
Confidence 555555432110 0 00 123578888776543
Q ss_pred ------------------------ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 152 ------------------------GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 152 ------------------------~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
.|+.|++.|... .....++.++++.+||.....++++.+|||||||||+|||
T Consensus 743 ~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~----~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAr 818 (916)
T 3pih_A 743 KGKRYNRETLEITYKGKNISDILDMTVDEALEFFKN----IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLAS 818 (916)
T ss_dssp TTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT----CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHH
T ss_pred cccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc----chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHH
Confidence 256666665421 1223567789999999643467899999999999999999
Q ss_pred HHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEeeC
Q 022337 208 TLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLK 278 (298)
Q Consensus 208 al~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g~ 278 (298)
||+++| ++|||||||+|||+..++.+++.|+++.++ |.|||+||||++.+. .||+|++| ++|+|++.|+
T Consensus 819 aL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIvI~HdL~~i~-~ADrIivLgp~gg~~~G~Iv~~Gt 896 (916)
T 3pih_A 819 ELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVIEHNLDVIK-NADHIIDLGPEGGKEGGYIVATGT 896 (916)
T ss_dssp HHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEES
T ss_pred HHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-hCCEEEEecCCCCCCCCEEEEEcC
Confidence 999875 799999999999999999999999999764 999999999999886 49999999 8999999999
Q ss_pred hhhhhccCChHHHHHhhh
Q 022337 279 PDLLSEAKHPMALRFLQL 296 (298)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~ 296 (298)
++++....+.+...|+..
T Consensus 897 peel~~~~~syt~~~l~~ 914 (916)
T 3pih_A 897 PEEIAKNPHSYTGRFLKN 914 (916)
T ss_dssp HHHHHSCTTCHHHHHHTT
T ss_pred HHHHHhCCchHHHHHHHh
Confidence 999987666777777654
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=4.3e-38 Score=325.44 Aligned_cols=219 Identities=28% Similarity=0.355 Sum_probs=168.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh-cCC-------CCCcc-------------E
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN-RLW-------EPPSG-------------T 120 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~-------~p~~G-------------~ 120 (298)
+.++++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 628 ~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 628 RWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp CEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred eEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 5799999862 3699999999999999999999999999999864 221 12333 4
Q ss_pred EEECCEeCCCCC---HH-------HH---------hcceEEEeCCCCCC-------------------------------
Q 022337 121 VFLDGRDITDLD---VL-------SL---------RRKVGMLFQIPALF------------------------------- 150 (298)
Q Consensus 121 I~i~g~~i~~~~---~~-------~~---------~~~ig~v~Q~~~l~------------------------------- 150 (298)
|.++|.++...+ +. .. .+.+||++|.+.+.
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 788888874321 11 01 13468888754321
Q ss_pred ------------------------cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 151 ------------------------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 151 ------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
..|+.|++.|.... ....+..++++.+||.....++++.+|||||||||+||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~----~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA 857 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI----PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLA 857 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC----HHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc----hhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHH
Confidence 12566666654221 12234678899999964357899999999999999999
Q ss_pred HHHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEee
Q 022337 207 RTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVL 277 (298)
Q Consensus 207 ral~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g 277 (298)
|+|+.+| ++|||||||+|||+.+++.+++.|+++.++ |.|||+||||++.+ ..||||++| ++|+|++.|
T Consensus 858 raL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g 935 (972)
T 2r6f_A 858 AELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVG 935 (972)
T ss_dssp HHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEE
T ss_pred HHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEec
Confidence 9999875 999999999999999999999999999764 99999999999987 579999999 789999999
Q ss_pred ChhhhhccCChHHHH
Q 022337 278 KPDLLSEAKHPMALR 292 (298)
Q Consensus 278 ~~~~~~~~~~~~~~~ 292 (298)
+++++......+...
T Consensus 936 ~~~el~~~~~~~t~~ 950 (972)
T 2r6f_A 936 TPEEVAEVKESHTGR 950 (972)
T ss_dssp SHHHHHTCTTCHHHH
T ss_pred CHHHHHhCchhHHHH
Confidence 999986543333333
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=336.75 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=163.4
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-E-EEECCEeCCCCCHHHHhc
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-T-VFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~-I~i~g~~i~~~~~~~~~~ 138 (298)
.+|++++||+++|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|. .++
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~ 179 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQ 179 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTS
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccC
Confidence 56788899998883 79999999999999999999999999999999999999 9 999981 257
Q ss_pred ceEEEeCCCCC---Cc-ccHHHHhHhCccc-cCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH--HcC
Q 022337 139 KVGMLFQIPAL---FE-GTVVDNIRYGPQL-RGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART--LAN 211 (298)
Q Consensus 139 ~ig~v~Q~~~l---~~-~tv~eni~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra--l~~ 211 (298)
.++|+||++.+ ++ .|++||+ |+... .+. ...+++.++++.+|+. +..+ +.+|||||||||+|||| |+.
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~-~~~~~~~~ll~~~gl~-~~~~--~~~LSgGq~qrlalAra~rL~~ 254 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGA-TLLHNKQPMVKNFGLE-RINE--NKDLYLECISQLGQVVGQRLHL 254 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC-CSSCCBCCEECCCCSS-SGGG--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCc-chHHHHHHHHHHhCCC-cccc--hhhhhHHHHHHHHHHHHHHhcc
Confidence 79999999854 33 4899999 76542 121 1123355678888996 3454 88999999999999999 999
Q ss_pred CCCe----EEEeC-cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH------HHHhhcCE-----EEEEe-CCEEE
Q 022337 212 EPEV----LLLDE-PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK------QIQRIADV-----VCLLV-NGEIV 274 (298)
Q Consensus 212 ~p~i----llLDE-Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~------~~~~~~d~-----v~vl~-~G~i~ 274 (298)
+|++ ||||| ||++||+. .+.+.+++++ .+.|+|+||||.+ ++..+||| |++|+ +|+++
T Consensus 255 ~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 255 DPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp CHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred CcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 9999 99999 99999999 5555555544 3789999999987 88899999 99999 99999
Q ss_pred EeeChhhhhc
Q 022337 275 EVLKPDLLSE 284 (298)
Q Consensus 275 ~~g~~~~~~~ 284 (298)
.++++++..
T Consensus 330 -~g~~~~~~~ 338 (460)
T 2npi_A 330 -AVDDVYKRS 338 (460)
T ss_dssp -CCCHHHHHH
T ss_pred -ECCHHHHhh
Confidence 899887743
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=3e-37 Score=320.07 Aligned_cols=222 Identities=24% Similarity=0.336 Sum_probs=166.6
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh-c----CCC---CCccE------------
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN-R----LWE---PPSGT------------ 120 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~-g----l~~---p~~G~------------ 120 (298)
.+.++++|++. .+|+|+||+|++||++||+|+||||||||+++|+ | .+. +..|.
T Consensus 645 ~~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 645 RRQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp SSEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred CceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 35799999852 3699999999999999999999999999999853 2 222 23443
Q ss_pred -EEECCEeCCCC---CHH-------H---------HhcceEEEeCCCCCC------------------------------
Q 022337 121 -VFLDGRDITDL---DVL-------S---------LRRKVGMLFQIPALF------------------------------ 150 (298)
Q Consensus 121 -I~i~g~~i~~~---~~~-------~---------~~~~ig~v~Q~~~l~------------------------------ 150 (298)
|.+++.++... ++. . ..+..||++|.+.+-
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 45566555321 110 0 123467877754320
Q ss_pred -------------------------cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 151 -------------------------EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 151 -------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
..|+.|++.|.... ....+..++++.+||.....++++.+|||||||||+|
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~----~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~L 874 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI----AGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKL 874 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC----HHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc----hHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHH
Confidence 12455666553221 1223467889999996325788999999999999999
Q ss_pred HHHHcCCC---CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEe
Q 022337 206 ARTLANEP---EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEV 276 (298)
Q Consensus 206 Aral~~~p---~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~ 276 (298)
||+|+.+| ++|||||||+|||+..++.+++.|++++++ |.|||+||||++.+ ..||+|++| ++|++++.
T Consensus 875 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~ 952 (993)
T 2ygr_A 875 ASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQ 952 (993)
T ss_dssp HHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEE
T ss_pred HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEe
Confidence 99999875 999999999999999999999999999764 99999999999998 579999999 68999999
Q ss_pred eChhhhhccCChHHHHHh
Q 022337 277 LKPDLLSEAKHPMALRFL 294 (298)
Q Consensus 277 g~~~~~~~~~~~~~~~~~ 294 (298)
|+++++......+...|+
T Consensus 953 G~~~el~~~~~~~t~~~l 970 (993)
T 2ygr_A 953 GTPEDVAAVPASYTGKFL 970 (993)
T ss_dssp ECHHHHHHCTTCHHHHHH
T ss_pred cCHHHHHhCCHHHHHHHH
Confidence 999988654334444443
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=100.00 E-value=2.9e-36 Score=288.23 Aligned_cols=196 Identities=15% Similarity=0.197 Sum_probs=146.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC--------------------------------------CCcc
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE--------------------------------------PPSG 119 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--------------------------------------p~~G 119 (298)
.+++++||++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999977764 4578
Q ss_pred EEEECCEeCCCCCHHHHhcc-eEEEeCCCCCCcccHHHHhHhCccccC------------------------CC------
Q 022337 120 TVFLDGRDITDLDVLSLRRK-VGMLFQIPALFEGTVVDNIRYGPQLRG------------------------KK------ 168 (298)
Q Consensus 120 ~I~i~g~~i~~~~~~~~~~~-ig~v~Q~~~l~~~tv~eni~~~~~~~~------------------------~~------ 168 (298)
++++||+++...+..++.+. +++++|++.++..+..++..|.-.... ..
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999865444555554 899999987654333322222100000 00
Q ss_pred --------------------------------ccHHHHHHHHHHcCCCch----------------------hhc-----
Q 022337 169 --------------------------------LTENEVYKLLSLADLDSS----------------------FLN----- 189 (298)
Q Consensus 169 --------------------------------~~~~~~~~~l~~~~l~~~----------------------~~~----- 189 (298)
.-.+.+.+.++.++++.. ...
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 001223344555554310 001
Q ss_pred --CCCCC-CChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 190 --KTGGE-ISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 190 --~~~~~-LSgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
++... ||||||||++|||+|+.+| ++|||||||++||+..+..+.+.|+++. + |.|||+||||++.+ .+||+
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~-~~~d~ 364 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIA-ARAHH 364 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHH-TTCSE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHH-hhcCe
Confidence 11222 7999999999999999999 9999999999999999999999999996 3 89999999999876 57999
Q ss_pred EEEE----eCCEEEEee
Q 022337 265 VCLL----VNGEIVEVL 277 (298)
Q Consensus 265 v~vl----~~G~i~~~g 277 (298)
+++| ++|+++...
T Consensus 365 i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 365 HYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEETTEEEEEE
T ss_pred EEEEEEeccCCceEEEE
Confidence 9999 999987653
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.98 E-value=3.1e-36 Score=264.68 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=105.9
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
++.+|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++.. +....++++||+||++ .
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~~~~~~~ig~v~q~~-------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PAVEAGEKLGFLPGTL-------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-CchhhhcceEEecCCH-------H
Confidence 45789996 89999999999999999999999999 999999943 33321 1123467899999987 3
Q ss_pred HHh-HhCc----cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHH
Q 022337 156 DNI-RYGP----QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIST 230 (298)
Q Consensus 156 eni-~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~ 230 (298)
||+ .+.. ..... ...+++.++++. ++ ||||||+|||||+.+|++|||||||++ ++
T Consensus 77 enl~~~~~~~~~~~~~~-~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDM-VEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp ---CTTTHHHHHHHTTT-SCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHHHHHHHHHHh-ccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 444 2211 00010 112334455544 22 999999999999999999999999999 89
Q ss_pred HHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEE
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i 273 (298)
..+++.|+++ + .|+||| +|||++.+. +....++|..
T Consensus 137 ~~l~~~l~~l-~-~g~tii-vtHd~~~~~----~~~~~~~G~~ 172 (208)
T 3b85_A 137 AQMKMFLTRL-G-FGSKMV-VTGDITQVD----LPGGQKSGLR 172 (208)
T ss_dssp HHHHHHHTTB-C-TTCEEE-EEEC----------------CCH
T ss_pred HHHHHHHHHh-c-CCCEEE-EECCHHHHh----CcCCCCCcHH
Confidence 9999999988 4 489999 999998664 3445567754
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.97 E-value=2.4e-32 Score=254.14 Aligned_cols=196 Identities=19% Similarity=0.305 Sum_probs=137.2
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC----------------------------------------------
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW---------------------------------------------- 114 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~---------------------------------------------- 114 (298)
++++|++.+| +++|+||||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678999999 99999999999999999999554
Q ss_pred ----CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCccccCC--C---------ccHHHHHH--
Q 022337 115 ----EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGK--K---------LTENEVYK-- 176 (298)
Q Consensus 115 ----~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~--~---------~~~~~~~~-- 176 (298)
.+.+|.+++||+++...........+|+.+|+..++. .++.+++...+..+.. . ...+++.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3345789999988743233344556888888776653 5787777654321000 0 00011111
Q ss_pred -----------------------HHHHcCCC-----chhhcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCC
Q 022337 177 -----------------------LLSLADLD-----SSFLNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSA 224 (298)
Q Consensus 177 -----------------------~l~~~~l~-----~~~~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~ 224 (298)
.++. +++ .+..+.++.+||||||||++|||||+ .+|++|||||||++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHTSCEEEC---------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1111 221 12245667899999999999999997 68999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEE--EEEeCCEE-EEeeChhh
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV--CLLVNGEI-VEVLKPDL 281 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v--~vl~~G~i-~~~g~~~~ 281 (298)
||+..++.+.+.|+++. + |.|+|++||+.+ +..+||++ ++|.+|+. +...+.++
T Consensus 254 LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 254 LDDYNAERFKRLLKENS-K-HTQFIVITHNKI-VMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CCHHHHHHHHHHHHHHT-T-TSEEEEECCCTT-GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CCHHHHHHHHHHHHHhc-C-CCeEEEEECCHH-HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 99999999999999984 3 789999999975 45789987 88888854 33334433
No 68
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.97 E-value=1.4e-31 Score=253.55 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=78.6
Q ss_pred cCCCCCCChhHHHHHHHHHHHc------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 189 NKTGGEISVGQAQRVALARTLA------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
++++.+|||||||||+|||||+ .+|++|||||||++||+.+++.+++.|+++.++ |.|||+||||++. ...|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecchHH-HHhC
Confidence 4678899999999999999999 799999999999999999999999999999754 9999999999998 5679
Q ss_pred CEEEEEeCCEEEE
Q 022337 263 DVVCLLVNGEIVE 275 (298)
Q Consensus 263 d~v~vl~~G~i~~ 275 (298)
|++++|++|++++
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999975
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.97 E-value=1.4e-31 Score=227.13 Aligned_cols=150 Identities=17% Similarity=0.258 Sum_probs=110.0
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCC--CcccHHHHhH
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPAL--FEGTVVDNIR 159 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l--~~~tv~eni~ 159 (298)
|+||++++||+++|+||||||||||+|++.+ |...+ +...++ |+++|++.- +..++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 21111 122222 778887642 2223444332
Q ss_pred hCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH-----------
Q 022337 160 YGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI----------- 228 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~----------- 228 (298)
. ........+.. ...+ .....|+|||||++||||++.+|++|+|||||++||+.
T Consensus 64 ~-------------~~~~~~~~g~~-~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~ 128 (171)
T 4gp7_A 64 Y-------------IVSKRLQLGKL-TVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEE 128 (171)
T ss_dssp H-------------HHHHHHHTTCC-EEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCH
T ss_pred H-------------HHHHHHhCCCe-EEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCH
Confidence 1 11122234553 2333 34567999999999999999999999999999999999
Q ss_pred -----HHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEE
Q 022337 229 -----STQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265 (298)
Q Consensus 229 -----~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v 265 (298)
.+..+++.|+++.++ |.|+|++|||++++.. ++++
T Consensus 129 ~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 129 YVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHHHH-EEEE
T ss_pred HHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHhhh-hhhc
Confidence 558899999888766 9999999999999875 4443
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.97 E-value=3.6e-35 Score=271.50 Aligned_cols=163 Identities=19% Similarity=0.244 Sum_probs=135.5
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
+|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~ 157 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSF 157 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECG
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEE
Confidence 588999999995 57999999999999999999999999999999999999 8988 356
Q ss_pred EeCCCCCCcccHHH-HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 143 LFQIPALFEGTVVD-NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 143 v~Q~~~l~~~tv~e-ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
++|++.+|+.|+++ |+.++.. .. +.+.+.++.+ ++. ..+ +..|||||||| ||||+++|+|||
T Consensus 158 v~q~~~lf~~ti~~~ni~~~~~-----~~-~~~~~~i~~~-L~~-gld--g~~LSgGqkQR---ARAll~~p~iLl---- 220 (305)
T 2v9p_A 158 ANHKSHFWLASLADTRAALVDD-----AT-HACWRYFDTY-LRN-ALD--GYPVSIDRKHK---AAVQIKAPPLLV---- 220 (305)
T ss_dssp GGTTSGGGGGGGTTCSCEEEEE-----EC-HHHHHHHHHT-TTG-GGG--TCCEECCCSSC---CCCEECCCCEEE----
T ss_pred ecCccccccccHHHHhhccCcc-----cc-HHHHHHHHHH-hHc-cCC--ccCcCHHHHHH---HHHHhCCCCEEE----
Confidence 78999999889987 8887532 11 2455666664 442 334 78999999999 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 222 TSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 222 ts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
||+||+.+++.+.. +||+++.+ .+||+| +|++|++++.|+++++
T Consensus 221 Ts~LD~~~~~~i~~---------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 TSNIDVQAEDRYLY---------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp EESSCSTTCGGGGG---------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred ECCCCHHHHHHHHH---------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 99999999888752 29999876 579999 9999999999999887
No 71
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.96 E-value=2e-33 Score=269.70 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=144.0
Q ss_pred CcceeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH
Q 022337 77 APILKGVNMEIPKGV--------------------IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge--------------------~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~ 136 (298)
+.+|+++||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999987652
Q ss_pred hcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChh--HHHHHHHHHHHcC---
Q 022337 137 RRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVG--QAQRVALARTLAN--- 211 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkQRv~iAral~~--- 211 (298)
+ .++++|++.....|+.||+.++.. ..++.++++.+++. +. +..+. ||+| |+||++|||||++
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~-------~~~~~~~L~~~~L~-~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~ 176 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST-------NFPPDTYLEKMKFY-EY-DFFII-ISATRFKKNDIDIAKAISMMKK 176 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS-------SCCHHHHHHHTTGG-GC-SEEEE-EESSCCCHHHHHHHHHHHHTTC
T ss_pred e--eEEeccccccCCeeehHhhcccch-------HHHHHHHHHHcCCC-cc-CCeEE-eCCCCccHHHHHHHHHHHhcCC
Confidence 1 288999864334588888866521 12467888999885 33 33444 9999 9999999999999
Q ss_pred -------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh----cC----CcEEEEEccCHHH--HHhhcCEEE-EEeCCE
Q 022337 212 -------EPEVLLLDEPTSALDPISTQNIEDVLVKLKK----KH----GMTIVMVSHSIKQ--IQRIADVVC-LLVNGE 272 (298)
Q Consensus 212 -------~p~illLDEPts~LD~~~~~~~~~~l~~l~~----~~----g~tii~itHd~~~--~~~~~d~v~-vl~~G~ 272 (298)
+|++++|||||+|||+..++++++.++++.+ +. ..+++++||+++. +.++||++. .|..|+
T Consensus 177 p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 177 EFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 9999999999999999999999999999852 22 3678899999987 889999985 455553
No 72
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.96 E-value=1.1e-33 Score=246.77 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=123.1
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~ 155 (298)
.++++| .+|++||+++|+||||||||||+|+|+|+++. |.+++......+....++.++|+||++.+|+. ++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 79999999999999999999999999999963 44444222111111235679999999887764 888
Q ss_pred HHhHhCc------cccCCCc--cHHHHHHH------HHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 156 DNIRYGP------QLRGKKL--TENEVYKL------LSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 156 eni~~~~------~~~~~~~--~~~~~~~~------l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
+|+.... ..++... .++++.+. ++.+|+. .+.++++.+|| ||+.+|++++||||
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep 150 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQAR 150 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHH
Confidence 8775332 1112111 12223333 4455563 46777888888 99999999999999
Q ss_pred CCCC----CHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 222 TSAL----DPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 222 ts~L----D~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
|+++ |+..++++.+.++++.++.|.|+|+||||++++..+||||++|.
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9998 78899999999999976568999999999999999999999984
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.96 E-value=1.8e-31 Score=228.77 Aligned_cols=148 Identities=11% Similarity=0.164 Sum_probs=110.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccH
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE 171 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 171 (298)
.++|+||||||||||+|+|+|++. |.++|.+.........++++||++|++. +.+|+ +. .. ...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~-----~~~~~-~~-~~-~~~--- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE-----GKKKI-FS-SK-FFT--- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT-----CCEEE-EE-ET-TCC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc-----HHHHH-HH-hh-cCC---
Confidence 589999999999999999999985 5666765432211134678999999862 22222 11 10 000
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH-----HcCCCCeEEEeC--cCCCCCHHHHHHHHHHHHHHHhcC
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART-----LANEPEVLLLDE--PTSALDPISTQNIEDVLVKLKKKH 244 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra-----l~~~p~illLDE--Pts~LD~~~~~~~~~~l~~l~~~~ 244 (298)
.+...++++.+||||||||++|||| ++.+|+++|||| ||++||+..++.+.+.+.+ .
T Consensus 66 ------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~ 129 (178)
T 1ye8_A 66 ------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----P 129 (178)
T ss_dssp ------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----T
T ss_pred ------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----C
Confidence 0124677888999999999999996 999999999999 9999999999999888865 3
Q ss_pred CcEEEEEc---cCHHHHHhhcCEEEEEeCCEEEE
Q 022337 245 GMTIVMVS---HSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 245 g~tii~it---Hd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
+.|+|++| ||.+.+..+|+| .+|++++
T Consensus 130 ~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 130 NVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 67788888 599999999998 5677765
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.96 E-value=1.6e-31 Score=247.13 Aligned_cols=178 Identities=16% Similarity=0.221 Sum_probs=142.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH--hcceEEEeCCCC-CCc
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSL--RRKVGMLFQIPA-LFE 151 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--~~~ig~v~Q~~~-l~~ 151 (298)
.++.+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.+... ..+ +..++|++|++. +++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 3467899999999999999999999999999999999999999999998765321 222 357999999998 887
Q ss_pred c-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCCCHH
Q 022337 152 G-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPI 228 (298)
Q Consensus 152 ~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~LD~~ 228 (298)
. +++||+.++.. .+.. ..+++.+|+. +..++++.+|| |||++||||++.+|+ +|+|| ||+|||+.
T Consensus 169 ~~~v~e~l~~~~~-~~~d------~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~ 236 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EGYD------VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 236 (302)
T ss_dssp HHHHHHHHHHHHH-TTCS------EEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred HHHHHHHHHHHHH-cCCc------chHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence 5 99999987532 1111 1245667875 45667788999 999999999999999 99999 99999998
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEEcc---------CHHHHHhhcCEEEEEeCCEEE
Q 022337 229 STQNIEDVLVKLKKKHGMTIVMVSH---------SIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 229 ~~~~~~~~l~~l~~~~g~tii~itH---------d~~~~~~~~d~v~vl~~G~i~ 274 (298)
.+ ++++.++.|.|+|++|| .++.+..+++.|.++..|+.+
T Consensus 237 ~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 237 PQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp HH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 55 24454445899999999 677787888999999999753
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.95 E-value=1.3e-31 Score=259.27 Aligned_cols=196 Identities=18% Similarity=0.183 Sum_probs=157.3
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE---eCCCCC-----H
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR---DITDLD-----V 133 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~---~i~~~~-----~ 133 (298)
++++++++++.|..+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++..+. .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999996456799999 999999999999999999999999999999999999999998 443211 2
Q ss_pred HHHhcceEEEeCC-CCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcC
Q 022337 134 LSLRRKVGMLFQI-PALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLAN 211 (298)
Q Consensus 134 ~~~~~~ig~v~Q~-~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~ 211 (298)
..+++.++|++|+ ..+++ .++.+|+.+....... +..... .+.+ .+..||+|| |||+|| +.
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-----------~~~~v~-~~ld-~l~~lS~g~-qrvslA---l~ 271 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-----------RGQHVL-LIMD-SLTRYAMAQ-REIALA---IG 271 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-----------TTCEEE-EEEE-CHHHHHHHH-HHHHHH---TT
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-----------CCCCHH-HHHH-hHHHHHHHH-HHHHHH---hC
Confidence 3467889999995 44454 4999999875422110 000111 1222 256799999 999999 88
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh---cCCc-----EEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKK---KHGM-----TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~---~~g~-----tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
+|++ |+|||+..+..+.+++.++.+ +.|. ||+++|||++ ..+||++++|.+|+|+.++++.++.
T Consensus 272 ~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 272 EPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp CCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTT
T ss_pred CCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHcc
Confidence 9988 999999999999999999865 2375 9999999999 5789999999999999998887653
No 76
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.95 E-value=4.9e-30 Score=242.16 Aligned_cols=175 Identities=16% Similarity=0.228 Sum_probs=142.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH--hcceEEEeCCCC-CCcc-
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSL--RRKVGMLFQIPA-LFEG- 152 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--~~~ig~v~Q~~~-l~~~- 152 (298)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+.+... ..+ +..++|++|++. +++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46899999999999999999999999999999999999999999998765321 122 457999999998 7775
Q ss_pred cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCCCHHHH
Q 022337 153 TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPIST 230 (298)
Q Consensus 153 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~LD~~~~ 230 (298)
++++|+.++.. .+.. ..+++.+|+. +..++++.+|| |||++||||++.+|+ +|+|| ||+|||+.++
T Consensus 228 tv~e~l~~~~~-~~~d------~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~ 295 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD------VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 295 (359)
T ss_dssp HHHHHHHHHHH-TTCS------EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred hHHHHHHHHHh-CCCH------HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH
Confidence 99999987532 1111 1245667775 35667788999 999999999999999 99999 9999999865
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcc---------CHHHHHhhcCEEEEEeCCEE
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSH---------SIKQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itH---------d~~~~~~~~d~v~vl~~G~i 273 (298)
. +++.++.|.|+|++|| .++.+..+++.|.++..|+.
T Consensus 296 ~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 296 A------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp H------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred H------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 3 3444445899999999 57777788899999999964
No 77
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.95 E-value=4.8e-32 Score=238.91 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=125.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhcceEEEeCCCCCCcc-c-H
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV-LSLRRKVGMLFQIPALFEG-T-V 154 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~ig~v~Q~~~l~~~-t-v 154 (298)
..|+|+||+|++|++++|+||||||||||+|+|+|++ | |+|.+ |.++...+. ...++.++|+||++.+|+. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 877643221 1235679999999877653 2 2
Q ss_pred HHHhHhC---ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH-----HHHHcCCCCeEEEeCcCCCCC
Q 022337 155 VDNIRYG---PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL-----ARTLANEPEVLLLDEPTSALD 226 (298)
Q Consensus 155 ~eni~~~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i-----Aral~~~p~illLDEPts~LD 226 (298)
.+++.++ ...++ ...+.+.++++...+. +.+ .+|||||+||++| ||+|+.+|++++|||||+++|
T Consensus 87 ~~~l~~~~~~~~~~g--~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 87 EDFLEYDNYANNFYG--TLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp TCEEEEEEETTEEEE--EEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred cchhhhhhcccccCC--CcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 2333221 11111 2245567777765431 233 5799999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc------CCcEEEEEccCHHHHHhhcCEEEE
Q 022337 227 PISTQNIEDVLVKLKKK------HGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~------~g~tii~itHd~~~~~~~~d~v~v 267 (298)
..+...+.+.+.++.++ .+.+.|+++||++++...+++++.
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 160 TENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 99999999988876543 356677788888777777666543
No 78
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.94 E-value=1.6e-29 Score=237.92 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=145.7
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC-------CCHH
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD-------LDVL 134 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~-------~~~~ 134 (298)
++++++++++.|+.+..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ....
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4689999999996466899999 9999999999999999999999999999999999999999875211 1112
Q ss_pred HHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC
Q 022337 135 SLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE 214 (298)
Q Consensus 135 ~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ 214 (298)
.+++.+.+++|... +..+.+.... ....+.+.....+-+--..-+.+..||+|| |||++| +.+|+
T Consensus 123 ~~~~~v~~~~~~~~----~~~~r~~~~~-------~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~ 187 (347)
T 2obl_A 123 TLSKCVLVVTTSDR----PALERMKAAF-------TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPD 187 (347)
T ss_dssp HHTTEEEEEECTTS----CHHHHHHHHH-------HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCC
T ss_pred hhhceEEEEECCCC----CHHHHHHHHH-------HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCC
Confidence 24455777777432 2222221100 000011111111110000114577899999 999999 68888
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHh-cCCc-----EEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKK-KHGM-----TIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~-~~g~-----tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+ |+||||.....+.+++.++.+ +.|. ||+++|||++ ..+||++++|.+|+|+.++++.++
T Consensus 188 ~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 188 V------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp C------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred c------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHc
Confidence 7 999999999999999999864 4587 9999999998 578999999999999999887765
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.94 E-value=4.2e-29 Score=227.41 Aligned_cols=148 Identities=18% Similarity=0.272 Sum_probs=100.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLT 170 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~ 170 (298)
.++|+||||||||||+|+|+|+..|++|+|.++|+++... ..++.++|++|++.+++. ||.||+.|+...... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-NC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCT-TC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccH-HH
Confidence 4899999999999999999999999999999999987432 235779999999988874 999999998654322 12
Q ss_pred HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Q 022337 171 ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM 250 (298)
Q Consensus 171 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~ 250 (298)
.+.+.+.+. ..+.+..+.+||||||||+++|||++. ++++|||+++||+.. .+.++++.+. .++|+
T Consensus 80 ~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~ 145 (270)
T 3sop_A 80 WEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIP 145 (270)
T ss_dssp SHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEE
T ss_pred HHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEE
Confidence 233444443 235566778999999999999999886 999999999999987 4455555442 78888
Q ss_pred EccCHHH
Q 022337 251 VSHSIKQ 257 (298)
Q Consensus 251 itHd~~~ 257 (298)
|.|..+.
T Consensus 146 Vi~K~D~ 152 (270)
T 3sop_A 146 VIAKADT 152 (270)
T ss_dssp EETTGGG
T ss_pred EEecccc
Confidence 8887653
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.94 E-value=4.6e-30 Score=238.29 Aligned_cols=180 Identities=14% Similarity=0.154 Sum_probs=138.5
Q ss_pred CCeEEEEeEEEEeCCCCcceeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 61 KPKFRVRELRKESDDGAPILKGVNME-----------------------IPKGVIMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 61 ~~~l~~~~l~~~y~~~~~vL~~isl~-----------------------i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
...|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 34689999999993 677777765 8999999999999999999999999999998
Q ss_pred ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCC
Q 022337 118 SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEI 195 (298)
Q Consensus 118 ~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~L 195 (298)
.|. +++++|+|++.+++.|+.||+.+... ++. ..+.+.+.+.++.++ . ...+.++.+|
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~-~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~l 177 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHR-KGFPESYNRRALMRFVTSVK-S-GSDYACAPVY 177 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTC-TTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEE
T ss_pred CCC-----------------CeEEEEecCccCCcccHHHHHHHHHh-cCCChHHHHHHHHHHHHHhC-C-CcccCCcccC
Confidence 663 46999999998887799999976421 222 223566778888887 3 2345667899
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH-HhhcCEEEEEeCCE
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI-QRIADVVCLLVNGE 272 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~-~~~~d~v~vl~~G~ 272 (298)
||||+||+++|||++.+|+|||||||++.+|+.. . .+.+..+ ..|+|+|+.+.. ..+++|.+.+.+|+
T Consensus 178 S~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~---~l~~~~D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 178 SHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----L---MVSDLFD-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp ETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----C---CGGGGCS-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred ChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----H---HHHHhcC-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998622 1 1222234 457788888653 44566666565653
No 81
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.94 E-value=1.4e-28 Score=230.02 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=110.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ....++.++++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~--~~~~~~~i~~~~g------------- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV--FKHHKNYTQLFFG------------- 224 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC--CSSCSSEEEEECB-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc--cccchhEEEEEeC-------------
Confidence 7999999999999999999999999999999999999999999999865221 1112344554430
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHH
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~ 238 (298)
|||+||++|||||..+|++|++||||+ .++.+.|+
T Consensus 225 --------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~ 259 (330)
T 2pt7_A 225 --------------------------------------GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYN 259 (330)
T ss_dssp --------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHH
T ss_pred --------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHH
Confidence 899999999999999999999999998 24567777
Q ss_pred HHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 239 KLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
.+.. .+.|+|+++|+.+ +...|||+++|.+|+
T Consensus 260 ~~~~-g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 260 VLCS-GHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHT-TCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred HHhc-CCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 7754 2458999999998 667899999999885
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.94 E-value=5.4e-30 Score=253.05 Aligned_cols=181 Identities=18% Similarity=0.203 Sum_probs=133.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 022337 63 KFRVRELRKESDDGAPILKGVNM-EIPKGVIMGIIGPSGSGKSTLLRA--LNRLWEPPSGTVFLDGRDITDLDVLSLRRK 139 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl-~i~~Ge~~~iiG~nGsGKSTLlk~--l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 139 (298)
+++.+++.+. .++.++|+++|| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|++.. ......++.
T Consensus 12 ~~~~~~~~~~-~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~-~~~~~~~~~ 89 (525)
T 1tf7_A 12 NSEHQAIAKM-RTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP-QDIIKNARS 89 (525)
T ss_dssp --CCSSCCEE-CCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH-HHHHHHHGG
T ss_pred Cccccccccc-cCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH-HHHHHHHHH
Confidence 3555566554 456789999999 999999999999999999999999 78999999999999998731 122344577
Q ss_pred eEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 140 VGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 140 ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
+||+||++... +|+.+. ...... +..++++.+++. ++.++.+.+||+|| |+++++|
T Consensus 90 ~g~~~q~~~~~-----~~l~~~-~~~~~~----~~~~~l~~~~l~-~~~~~~~~~LS~g~-------------~~~lilD 145 (525)
T 1tf7_A 90 FGWDLAKLVDE-----GKLFIL-DASPDP----EGQEVVGGFDLS-ALIERINYAIQKYR-------------ARRVSID 145 (525)
T ss_dssp GTCCHHHHHHT-----TSEEEE-ECCCCS----SCCSCCSSHHHH-HHHHHHHHHHHHHT-------------CSEEEEE
T ss_pred cCCChHHhhcc-----CcEEEE-ecCccc----chhhhhcccCHH-HHHHHHHHHHHHcC-------------CCEEEEC
Confidence 99999986421 112111 000000 011233344443 35566677778775 7799999
Q ss_pred CcCC-----CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH---------HhhcCEEEEEeC
Q 022337 220 EPTS-----ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI---------QRIADVVCLLVN 270 (298)
Q Consensus 220 EPts-----~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~---------~~~~d~v~vl~~ 270 (298)
|||+ +||+..++.+++++++++++ |+|+|++||+++.+ ..+||+|++|++
T Consensus 146 e~t~~~~~~~lD~~~~~~l~~ll~~l~~~-g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 146 SVTSVFQQYDASSVVRRELFRLVARLKQI-GATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp CSTTTSTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred CHHHHHHhcCCHHHHHHHHHHHHHHHHHC-CCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 9998 46999999999999999764 99999999999984 556999999998
No 83
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.93 E-value=1.6e-27 Score=218.20 Aligned_cols=185 Identities=18% Similarity=0.204 Sum_probs=129.5
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
.++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+. +..++++++..++|+..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~---~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE---SVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS---CHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC---CHHHHHHHHHHHHcCCCh---hhc
Confidence 4689999999999999999999999999999999999999988 776654332 444555555555554432 222
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH-HHHHHHHHHHcCCCCeEEEeCcCC---C---CCH-
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ-AQRVALARTLANEPEVLLLDEPTS---A---LDP- 227 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kQRv~iAral~~~p~illLDEPts---~---LD~- 227 (298)
+++..+. +. .....+.+.++++..++ .....+.++|.+| +||+. |+++..+|+++|+||||+ + +|.
T Consensus 96 ~~l~~~~-~~-~~~~~~~~~~~l~~~~l---~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~ 169 (296)
T 1cr0_A 96 DSLKREI-IE-NGKFDQWFDELFGNDTF---HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER 169 (296)
T ss_dssp HHHHHHH-HH-HTHHHHHHHHHHSSSCE---EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred cccccCC-CC-HHHHHHHHHHHhccCCE---EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence 3333221 00 01111223333333333 1234456799999 67777 999999999999999999 5 565
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCH--H--------------------HHHhhcCEEEEEeCCEE
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSI--K--------------------QIQRIADVVCLLVNGEI 273 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~--~--------------------~~~~~~d~v~vl~~G~i 273 (298)
.....+++.|++++++.|+|||++||+. + .+..+||+|++|++|+.
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 6778899999999877799999999995 5 78889999999999875
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.93 E-value=2.3e-27 Score=249.41 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=128.2
Q ss_pred CCCeEEEEe-----EEEEeCCCCcceeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe
Q 022337 60 QKPKFRVRE-----LRKESDDGAPILKGVNMEIPK-------GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD 127 (298)
Q Consensus 60 ~~~~l~~~~-----l~~~y~~~~~vL~~isl~i~~-------Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~ 127 (298)
..++|+++| |++.|.++..+++|++|++++ |++++|+||||||||||||++ |++.+
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 345799999 999985456899999999987 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcceE-EEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 128 ITDLDVLSLRRKVG-MLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 128 i~~~~~~~~~~~ig-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
..++| ||||++. ..++.|+|.. .+|+.+ ...+..+++|+++++ +++|
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-------------------rig~~d-~~~~~~stf~~em~~-~a~a 862 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-------------------RLGASD-RIMSGESTFFVELSE-TASI 862 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-------------------ECC----------CHHHHHHHH-HHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-------------------HcCCHH-HHhhchhhhHHHHHH-HHHH
Confidence 23466 9999863 3466555531 123221 122344567887765 9999
Q ss_pred HHHcCCCCeEEEeCcCCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEE
Q 022337 207 RTLANEPEVLLLDEPTSALDPIST-QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 207 ral~~~p~illLDEPts~LD~~~~-~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~ 274 (298)
++++.+|+++|||||++|+|+... ..++++|..+.++.|.++|++||+++.+..+||++.++ +|++.
T Consensus 863 l~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 863 LMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 999999999999999999999885 55788888887655899999999999999999998886 58877
No 85
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.93 E-value=3.8e-26 Score=215.69 Aligned_cols=85 Identities=28% Similarity=0.277 Sum_probs=77.2
Q ss_pred CCCC-CCChhHHHHHHHHHHHc---------CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH
Q 022337 190 KTGG-EISVGQAQRVALARTLA---------NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 190 ~~~~-~LSgGqkQRv~iAral~---------~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~ 259 (298)
+++. .||||||||++||++|+ .+|+||||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~-- 332 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP-- 332 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT--
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc--
Confidence 3456 79999999999999999 8999999999999999999999999998763 699999995 43
Q ss_pred hhcCEEEEEeCCEEEEeeChhhh
Q 022337 260 RIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 260 ~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
.||++++|++|+++..|+++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTTS
T ss_pred -cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998876
No 86
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.92 E-value=1.8e-26 Score=239.57 Aligned_cols=161 Identities=24% Similarity=0.317 Sum_probs=126.8
Q ss_pred HHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc--C--CC------ccHHHH
Q 022337 105 TLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR--G--KK------LTENEV 174 (298)
Q Consensus 105 TLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~--~--~~------~~~~~~ 174 (298)
|...|..+.++|..|+|+++|+++..+. ..++.+++.|..... . .. ...++.
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~------------------~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFT------------------ELSISEELEFLKNLNLTEREREIVGELLKEIEKR 444 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHH------------------HSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHHhh------------------hCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHH
Confidence 3456777889999999999999874321 124555554421110 0 00 011334
Q ss_pred HHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 022337 175 YKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVS 252 (298)
Q Consensus 175 ~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~it 252 (298)
.+.+..+|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+...+.+++.|+++.++ |.|||+||
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVt 523 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVE 523 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEEC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 5678889996323689999999999999999999999887 99999999999999999999999999754 99999999
Q ss_pred cCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhcc
Q 022337 253 HSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 253 Hd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~ 285 (298)
||++.+. .||+|++| ++|++++.|+++++...
T Consensus 524 Hd~~~~~-~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~ 561 (916)
T 3pih_A 524 HDEEVIR-NADHIIDIGPGGGTNGGRVVFQGTVDELLKN 561 (916)
T ss_dssp CCHHHHH-TCSEEEEEESSSGGGCSEEEEEECHHHHHHS
T ss_pred CCHHHHH-hCCEEEEEcCCcccCCCEEEEeechhhhhcC
Confidence 9999886 49999999 89999999999988643
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.92 E-value=1.8e-26 Score=227.81 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=124.1
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcc
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~ 163 (298)
+..|++|++++|+||||||||||+++++|+..|+ |+ +.+.+++|++. .++.++...
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~--- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYS--- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHT---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHH---
Confidence 4589999999999999999999999999998874 43 11456666641 244444321
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH-----HHHHHHHHHH
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI-----STQNIEDVLV 238 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~-----~~~~~~~~l~ 238 (298)
.+.. +.+ +...|+. .+.+.++.+|||||+||+++|+++..+|++||+| ||++||+. .++.+.++++
T Consensus 331 -~g~~-----~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~ 401 (525)
T 1tf7_A 331 -WGMD-----FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTG 401 (525)
T ss_dssp -TSCC-----HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHH
T ss_pred -cCCC-----HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHH
Confidence 1111 112 2345554 4667889999999999999999999999999999 99999999 9999999999
Q ss_pred HHHhcCCcEEEEEccCH----------HHHHhhcCEEEEEeCCE
Q 022337 239 KLKKKHGMTIVMVSHSI----------KQIQRIADVVCLLVNGE 272 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~----------~~~~~~~d~v~vl~~G~ 272 (298)
.+++ .|.|+|++||+. ..+..+||+|++|++|+
T Consensus 402 ~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 402 YAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8865 499999999999 77888999999999987
No 88
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.92 E-value=6.2e-25 Score=205.62 Aligned_cols=80 Identities=29% Similarity=0.364 Sum_probs=71.9
Q ss_pred hcCCCCCCChhHHH------HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 188 LNKTGGEISVGQAQ------RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 188 ~~~~~~~LSgGqkQ------Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
.++++.+||||||| |+++||||+.+|++|||||||++||+..+..+.+.|.++.++ |.|||+||||.+ +..+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~-~~~~ 319 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE-LKDA 319 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG-GGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH-HHHh
Confidence 35678899999999 678889999999999999999999999999999999998655 889999999965 5678
Q ss_pred cCEEEEEe
Q 022337 262 ADVVCLLV 269 (298)
Q Consensus 262 ~d~v~vl~ 269 (298)
||++++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999885
No 89
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.92 E-value=6.7e-25 Score=216.26 Aligned_cols=78 Identities=17% Similarity=0.202 Sum_probs=72.1
Q ss_pred CCCCC-ChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 191 TGGEI-SVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 191 ~~~~L-SgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
++.+| ||||||||+|||||+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+||||++.+. +||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEE
Confidence 45677 999999999999999999 99999999999999999999999999975 799999999999775 6999999
Q ss_pred EeCC
Q 022337 268 LVNG 271 (298)
Q Consensus 268 l~~G 271 (298)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 90
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.91 E-value=3.6e-26 Score=204.16 Aligned_cols=165 Identities=15% Similarity=0.128 Sum_probs=109.6
Q ss_pred CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-cc
Q 022337 75 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GT 153 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~t 153 (298)
+++++|+|+||++++|+++||+||||||||||+|+|+|++ |.+.++ ..++.++|++|+. +++ .|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccC
Confidence 4567999999999999999999999999999999999976 555443 2467899999996 555 59
Q ss_pred HHHHhHhCccccCC----CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHH
Q 022337 154 VVDNIRYGPQLRGK----KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPIS 229 (298)
Q Consensus 154 v~eni~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~ 229 (298)
+.+++.+....... ..+.+.+.+.++.+. +..+.++..||+||+||+++ ++++.+|+++|+|||....|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~- 149 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE- 149 (245)
T ss_dssp HHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH-
T ss_pred HhHhhhhhccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH-
Confidence 99998764332221 112344556665431 23456788999999999988 6889999999999999888764
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccC-HHHHHhhcCEEEEEeCCE
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHS-IKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd-~~~~~~~~d~v~vl~~G~ 272 (298)
+.++ .+.+|+++||+ ......+++++ ++|+
T Consensus 150 -------l~~~---~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 150 -------IRDM---FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp -------HHTT---CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred -------HHHh---cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 2222 27899999997 44445555555 6675
No 91
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.91 E-value=2.2e-26 Score=203.74 Aligned_cols=181 Identities=16% Similarity=0.123 Sum_probs=114.1
Q ss_pred eEEEEeEEEEeCCCCcceeeeeE--EEeCCcEEEEEcCCCccHHHHHHHHh--cCCCCCccEEEECCEeCCCCCHHHHhc
Q 022337 63 KFRVRELRKESDDGAPILKGVNM--EIPKGVIMGIIGPSGSGKSTLLRALN--RLWEPPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl--~i~~Ge~~~iiG~nGsGKSTLlk~l~--gl~~p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
++++++++..+. .|+.+ + .|++|++++|+||||||||||+++|+ |+.++.+|.+++++.+... ......+
T Consensus 6 ~~~~~~i~tg~~----~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (251)
T 2ehv_A 6 YQPVRRVKSGIP----GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMA 79 (251)
T ss_dssp --CCCEECCSCT----TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHH
T ss_pred ccccceeecCCH----hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHH
Confidence 455666665443 34443 2 69999999999999999999999999 7757778888887754321 1122345
Q ss_pred ceEEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 139 KVGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 139 ~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
.+|+.+|+...++ .++.++...... .... .. .......+.++.++...+..-..+|++++
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---------~~-----~~~~~~~~~~~~~~~~~~~l~~~~p~~li 140 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSVVG-----LPSE---------EK-----FVLEDRFNVDNFLRYIYRVVKAINAKRLV 140 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC--------------------------------------CCHHHHHHHHHHHHHHTTCSEEE
T ss_pred HcCCChHHHhhcCCEEEEEccccccc-----cccc---------cc-----eeccCcccHHHHHHHHHHHHHhhCCCEEE
Confidence 6787777643222 133222211100 0000 00 00111233455555555555568999999
Q ss_pred EeCcCCCCC-----HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH---------Hhhc-CEEEEEe
Q 022337 218 LDEPTSALD-----PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI---------QRIA-DVVCLLV 269 (298)
Q Consensus 218 LDEPts~LD-----~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~---------~~~~-d~v~vl~ 269 (298)
+||||++|| +..++.+.++++.++++ |+|||++||+++.+ ..+| |+|++|+
T Consensus 141 lDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 141 IDSIPSIALRLEEERKIREVLLKLNTILLEM-GVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp EECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-CCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred EccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999999997 67777799999888654 99999999999998 6888 9999995
No 92
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.90 E-value=2.5e-25 Score=194.53 Aligned_cols=151 Identities=18% Similarity=0.215 Sum_probs=105.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-------CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHh
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-------PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNI 158 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-------~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni 158 (298)
-|++|++++|+||||||||||+++|+|++.| ..|.+++++.+. .. .+++++++|...+++.++.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999996655 445888887652 11 2346777888777777888888
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH-------cCCCCeEEEeCcCCCCCHHH--
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL-------ANEPEVLLLDEPTSALDPIS-- 229 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral-------~~~p~illLDEPts~LD~~~-- 229 (298)
.+.... . .. .+++.+..++++ ..+|+++++||||+++|+..
T Consensus 95 ~~~~~~---~--~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~ 144 (231)
T 4a74_A 95 YVARAF---N--SN-------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG 144 (231)
T ss_dssp EEEECC---S--HH-------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCS
T ss_pred EEEecC---C--hH-------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCC
Confidence 764321 0 00 011112222222 45899999999999999842
Q ss_pred ----------HHHHHHHHHHHHhcCCcEEEEEcc----CHHHHHhhcCEEEEEeCCE
Q 022337 230 ----------TQNIEDVLVKLKKKHGMTIVMVSH----SIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 230 ----------~~~~~~~l~~l~~~~g~tii~itH----d~~~~~~~~d~v~vl~~G~ 272 (298)
..++++.|.+++++.|+|||++|| +...+..+||++++|++|+
T Consensus 145 ~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 145 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 237888888887667999999999 5555889999999999763
No 93
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.89 E-value=1.6e-24 Score=225.74 Aligned_cols=168 Identities=18% Similarity=0.186 Sum_probs=120.3
Q ss_pred CCeEEEEeEEEEeC----CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------hcCCCCCccEEEECCEeC
Q 022337 61 KPKFRVRELRKESD----DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRAL--------NRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 61 ~~~l~~~~l~~~y~----~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l--------~gl~~p~~G~I~i~g~~i 128 (298)
...+++++....+- +++.+++|+||++++|++++|+||||||||||||++ .|.+-|.++..
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------- 701 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------- 701 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------
Confidence 34577777654331 234799999999999999999999999999999999 45444433211
Q ss_pred CCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHH
Q 022337 129 TDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALART 208 (298)
Q Consensus 129 ~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAra 208 (298)
++.+ . +++..+|+.+ .....+|+|++++..+|++
T Consensus 702 -----------~~~~-------d------------------------~i~~~ig~~d----~l~~~lStf~~e~~~~a~i 735 (934)
T 3thx_A 702 -----------VSIV-------D------------------------CILARVGAGD----SQLKGVSTFMAEMLETASI 735 (934)
T ss_dssp -----------EECC-------S------------------------EEEEECC-------------CHHHHHHHHHHHH
T ss_pred -----------chHH-------H------------------------HHHHhcCchh----hHHHhHhhhHHHHHHHHHH
Confidence 0100 0 0111223321 2234578888888888888
Q ss_pred H--cCCCCeEEEeCcCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 209 L--ANEPEVLLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 209 l--~~~p~illLDEPts~LD~~~~~~~-~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
+ +.+|+++||||||+|+|+.....+ ..++..+.++.|+|+|++||+.+.+ .+||++..+++|++...++.+++
T Consensus 736 l~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp HHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 8 999999999999999999998888 6666777654589999999997765 68999999999999887776654
No 94
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.89 E-value=1.3e-23 Score=217.68 Aligned_cols=130 Identities=23% Similarity=0.357 Sum_probs=108.3
Q ss_pred cccHHHHhHhCccccCCCcc------------HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC--CeE
Q 022337 151 EGTVVDNIRYGPQLRGKKLT------------ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP--EVL 216 (298)
Q Consensus 151 ~~tv~eni~~~~~~~~~~~~------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p--~il 216 (298)
..||.|++.|...+ ..+.. .+++ +.+..+||+.-..++.+.+|||||||||+||++|..+| ++|
T Consensus 451 ~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 451 AMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp TSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 46999999984322 22110 1223 45788999632268999999999999999999999985 999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhc
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSE 284 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~ 284 (298)
||||||++|||...+.+++.|+++.+ .|.|||+|+||++.+. .||+|++| ++|++++.|+++++..
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999999999999999999965 5999999999999875 69999999 7999999999998865
No 95
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.89 E-value=7.9e-24 Score=218.18 Aligned_cols=181 Identities=24% Similarity=0.278 Sum_probs=134.4
Q ss_pred CCCccHHHHHHHHhcC---------CCCCccEEEECCEeCCC---CCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 98 PSGSGKSTLLRALNRL---------WEPPSGTVFLDGRDITD---LDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 98 ~nGsGKSTLlk~l~gl---------~~p~~G~I~i~g~~i~~---~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
.+..||+|+.+.+... ++|..|+|.++|++|.+ ++..+....+.-++|++.... + +...+.....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 346 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRPEQA 346 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCSSHH
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcchhhH
Confidence 4667999999998874 45678999999998865 333333333344444432111 1 0111110000
Q ss_pred C-----CCccHHHHHHHHHHcCCCchh-hcCCCCCCChhHHHHHHHHHHHcCCC--CeEEEeCcCCCCCHHHHHHHHHHH
Q 022337 166 G-----KKLTENEVYKLLSLADLDSSF-LNKTGGEISVGQAQRVALARTLANEP--EVLLLDEPTSALDPISTQNIEDVL 237 (298)
Q Consensus 166 ~-----~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkQRv~iAral~~~p--~illLDEPts~LD~~~~~~~~~~l 237 (298)
. .....+++. .+..+|+. .+ .++++.+|||||||||+||++|+.+| ++|||||||++||+...+.++++|
T Consensus 347 ~i~~~i~~ei~~rl~-~L~~vGL~-~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l 424 (842)
T 2vf7_A 347 IALQRMAADLVKRLD-VLLHLGLG-YLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSAL 424 (842)
T ss_dssp HHHHHHHHHHHHHHH-HHHHTTCT-TSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHhCCCC-cCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHH
Confidence 0 001123343 67889996 34 68999999999999999999999999 599999999999999999999999
Q ss_pred HHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhcc
Q 022337 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 238 ~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~ 285 (298)
+++.+ .|.|||+|+||++.+ ..||+|++| ++|++++.|+++++...
T Consensus 425 ~~L~~-~G~TVIvVeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 425 ENLKR-GGNSLFVVEHDLDVI-RRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHT-TTCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHH-cCCEEEEEcCCHHHH-HhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 99965 599999999999977 579999999 79999999999988653
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.89 E-value=1.7e-24 Score=196.04 Aligned_cols=140 Identities=17% Similarity=0.156 Sum_probs=103.9
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcceEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKVGM 142 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~ig~ 142 (298)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSI 74 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSE
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCccee
Confidence 455566532 5899999 9999999999999999999999999999998 999999987653211 111222
Q ss_pred EeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC
Q 022337 143 LFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT 222 (298)
Q Consensus 143 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt 222 (298)
++|. .++++. ..| |++||+||..+|+++++||||
T Consensus 75 v~q~---------------------------------~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~ 108 (261)
T 2eyu_A 75 VNQR---------------------------------EVGEDT-------KSF------ADALRAALREDPDVIFVGEMR 108 (261)
T ss_dssp EEEE---------------------------------EBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC
T ss_pred eeHH---------------------------------HhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC
Confidence 2221 233321 122 899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEe
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~ 269 (298)
|+.+...++ +.. + .|.+|+++||+.+ +...|||+++|.
T Consensus 109 ---D~~~~~~~l---~~~-~-~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 109 ---DLETVETAL---RAA-E-TGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp ---SHHHHHHHH---HHH-H-TTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred ---CHHHHHHHH---HHH-c-cCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 998866544 333 3 3899999999987 557788875553
No 97
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.89 E-value=7.9e-23 Score=196.92 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=68.3
Q ss_pred CCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 192 GGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 192 ~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
+..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|.++.++ +.++|+|||+.... ..||++++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~~ii~th~~~~~-~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP-DLQFIVISLKNTMF-EKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBT-TBEEEEECSCHHHH-TTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcC-CCEEEEEECCHHHH-HhCCEEEE
Confidence 4459999999999999999 689999999999999999999999999988543 78999999997655 67999998
Q ss_pred Ee
Q 022337 268 LV 269 (298)
Q Consensus 268 l~ 269 (298)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.89 E-value=4.1e-25 Score=203.89 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=88.7
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC-CCCCccEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL-WEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl-~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
.||++.|+ ++.++++++|+| +|+||||||||||+++|.|. ..|++| |.++|.++.. . .. .+.+++++|
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVEIE 70 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEEec
Confidence 47889994 678999999998 99999999999999999998 899999 9888887643 1 11 356899999
Q ss_pred CCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 146 IPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 146 ~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
+..++. .|+.|+..++..... .++...+.+. +. +..++++.++|||||||+.+|||++ ++++||||++
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~----~e~~~~l~~~--l~-~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINC----RDCFKTIISY--ID-EQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp ---CCEEEEEEEEC---------------CTTHHHH--HH-HHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred CCCcccCcchhhhhhhhhhcCc----HHHHHHHHHH--HH-HHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 887664 588888877543210 1111111221 11 2345677899999999999999986 9999999985
Q ss_pred -CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 225 -LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 225 -LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
||+... +.++++.++.+.++|+++||+.
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 5566665545889999999974
No 99
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.88 E-value=1.5e-24 Score=200.61 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=111.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH--hcceEEEeCCCCCCcc-cHHHHhHhC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSL--RRKVGMLFQIPALFEG-TVVDNIRYG 161 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~--~~~ig~v~Q~~~l~~~-tv~eni~~~ 161 (298)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+.+... ..+ +..++|++|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999865431 122 3569999999988875 999999865
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~ 241 (298)
... +... .+++..|+. +...+.+ +..++||++||||++.+|+.++| .||+.+...+++.++++.
T Consensus 181 ~~~-~~d~------~llDt~G~~-~~~~~~~---~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~ 244 (304)
T 1rj9_A 181 KAR-GYDL------LFVDTAGRL-HTKHNLM---EELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFH 244 (304)
T ss_dssp HHH-TCSE------EEECCCCCC-TTCHHHH---HHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHH
T ss_pred HhC-CCCE------EEecCCCCC-CchHHHH---HHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHH
Confidence 211 1110 122334543 1222333 44458999999999999995444 456655666777777776
Q ss_pred hcCCcEEEEEccCHH
Q 022337 242 KKHGMTIVMVSHSIK 256 (298)
Q Consensus 242 ~~~g~tii~itHd~~ 256 (298)
++.|.|+|++||+.+
T Consensus 245 ~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHCCSEEEEECTTS
T ss_pred HHcCCcEEEEECCcc
Confidence 555899999999843
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.88 E-value=9.9e-23 Score=169.47 Aligned_cols=84 Identities=30% Similarity=0.359 Sum_probs=75.5
Q ss_pred hcCCCCCCChhHHHHHHHH------HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 188 LNKTGGEISVGQAQRVALA------RTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iA------ral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
.++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.|.++.++ |.|||++|||++ +..+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~-~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE-LKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG-GGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHH-HHHh
Confidence 4678899999999999876 9999999999999999999999999999999998654 899999999995 6689
Q ss_pred cCEEEEE--eCCEE
Q 022337 262 ADVVCLL--VNGEI 273 (298)
Q Consensus 262 ~d~v~vl--~~G~i 273 (298)
||++++| ++|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 56643
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.88 E-value=3.4e-24 Score=187.06 Aligned_cols=169 Identities=13% Similarity=0.110 Sum_probs=121.0
Q ss_pred CCcceeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh---cceEEEeCCCCCCc
Q 022337 76 GAPILKGVNM-EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLR---RKVGMLFQIPALFE 151 (298)
Q Consensus 76 ~~~vL~~isl-~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~---~~ig~v~Q~~~l~~ 151 (298)
+.+.|+++.. .+++|++++|+||||||||||++.|++...++.|.|.+.+.+. +...++ ..+++.+|+...
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 82 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE-- 82 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT--
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh--
Confidence 4568899988 8999999999999999999999999998888888888866443 222222 123443332110
Q ss_pred ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC--eEEEeCcCCCC--CH
Q 022337 152 GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE--VLLLDEPTSAL--DP 227 (298)
Q Consensus 152 ~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~--illLDEPts~L--D~ 227 (298)
+++.+.. ... . . .+ . .+. ....|.++.++...+.+...+|+ ++++||||+.+ |+
T Consensus 83 ----~~~~~~~---~~~---~----~---~~-~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~ 140 (235)
T 2w0m_A 83 ----KKLIIID---ALM---K----E---KE-D-QWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKP 140 (235)
T ss_dssp ----TTEEEEE---CCC---------------C-TTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCG
T ss_pred ----CCEEEEe---ccc---c----c---cC-c-eee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCH
Confidence 0111000 000 0 0 01 1 111 12349999999888888888999 99999999888 99
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEEccCH--------HHHHhhcCEEEEEeCC
Q 022337 228 ISTQNIEDVLVKLKKKHGMTIVMVSHSI--------KQIQRIADVVCLLVNG 271 (298)
Q Consensus 228 ~~~~~~~~~l~~l~~~~g~tii~itHd~--------~~~~~~~d~v~vl~~G 271 (298)
....++++.|++++++.|.|||++||+. ..+..+||+|++|+..
T Consensus 141 ~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 141 AMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999999999999877799999999999 4588999999999864
No 102
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.88 E-value=2.2e-22 Score=209.04 Aligned_cols=131 Identities=24% Similarity=0.337 Sum_probs=109.0
Q ss_pred CcccHHHHhHhCccccCCCcc------------HHHHHHHHHHcCCCchh-hcCCCCCCChhHHHHHHHHHHHcCC--CC
Q 022337 150 FEGTVVDNIRYGPQLRGKKLT------------ENEVYKLLSLADLDSSF-LNKTGGEISVGQAQRVALARTLANE--PE 214 (298)
Q Consensus 150 ~~~tv~eni~~~~~~~~~~~~------------~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkQRv~iAral~~~--p~ 214 (298)
+..||.|++.|...+ +.+.. .+++ +.+..+||+ .+ .++.+.+|||||||||+||++|..+ |+
T Consensus 467 ~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~-~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~ 543 (993)
T 2ygr_A 467 CELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL-GFLLDVGLE-YLSLSRAAATLSGGEAQRIRLATQIGSGLVGV 543 (993)
T ss_dssp SHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGG-GSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred hhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCC-ccccCCCcccCCHHHHHHHHHHHHHhhCCCCc
Confidence 346999999984322 22210 1222 357888985 34 6899999999999999999999998 58
Q ss_pred eEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEE------eCCEEEEeeChhhhhcc
Q 022337 215 VLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLL------VNGEIVEVLKPDLLSEA 285 (298)
Q Consensus 215 illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl------~~G~i~~~g~~~~~~~~ 285 (298)
+|||||||++||+...+.+++.|+++.+ .|.|||+|+||++.+. .||+|++| ++|++++.|+++++...
T Consensus 544 llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 544 LYVLDEPSIGLHQRDNRRLIETLTRLRD-LGNTLIVVEHDEDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHH-cCCEEEEECCCHHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 9999999999999999999999999975 5999999999999875 79999999 79999999999988653
No 103
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.88 E-value=1.3e-24 Score=187.51 Aligned_cols=175 Identities=16% Similarity=0.186 Sum_probs=104.7
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC-----CCCccEEEECC-------EeCCC
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW-----EPPSGTVFLDG-------RDITD 130 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-----~p~~G~I~i~g-------~~i~~ 130 (298)
+++++|+++.|+ ..++++ |++++|+.++|+|+||||||||++.|+|.. .|+.|.+.+.+ ..+.+
T Consensus 3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 589999999994 368888 899999999999999999999999999998 88888876422 11111
Q ss_pred CC-----------HHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChh
Q 022337 131 LD-----------VLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVG 198 (298)
Q Consensus 131 ~~-----------~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 198 (298)
.+ ...+++.+++++|+....+. .+..++.. .....+.++.+.++..+++.-....+...+|+|
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~ 153 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH-----PLKDLDQQMIEWAVDSNIAVLVLLTKADKLASG 153 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-----CCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHH
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC-----CCchhHHHHHHHHHHcCCCeEEEEecccCCCch
Confidence 00 00111122222222111110 10000100 011123345666777787532346678889999
Q ss_pred HHHH-HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 022337 199 QAQR-VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMT 247 (298)
Q Consensus 199 qkQR-v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~t 247 (298)
|+|| +..+++++.+|+++++|||||++|+.+..++++.|.++.++ +.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~~ 202 (210)
T 1pui_A 154 ARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQP 202 (210)
T ss_dssp HHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-ccc
Confidence 9999 89999999999999999999999999999999999988654 544
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.88 E-value=1e-23 Score=219.12 Aligned_cols=160 Identities=14% Similarity=0.138 Sum_probs=108.5
Q ss_pred CeEEEEeEEEEe-----C-CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH
Q 022337 62 PKFRVRELRKES-----D-DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS 135 (298)
Q Consensus 62 ~~l~~~~l~~~y-----~-~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~ 135 (298)
..+.+++..... . +++.|++|+||++++|++++|+||||||||||||+++++.-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 357777655322 1 2457999999999999999999999999999999998642110
Q ss_pred HhcceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 136 LRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 136 ~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+.-.++|+....+ .+.+ +++..+++.+ ...+..+++|+||+|++.|+++ +.+|++
T Consensus 701 --q~g~~vpa~~~~i--~~~d-------------------~i~~~ig~~d-~l~~~~stfs~em~~~~~il~~-a~~p~L 755 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVD-------------------GIFTRMGAAD-NIYKGRSTFMEELTDTAEIIRK-ATSQSL 755 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCS-------------------EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCE
T ss_pred --hcCccccchhhhh--hHHH-------------------HHHHhCChHH-HHHHhHHHhhHHHHHHHHHHHh-ccCCCE
Confidence 0011222211000 0000 0112233332 2345567899999999999999 899999
Q ss_pred EEEeCcCCCCCHHHHHHHH-HHHHHHHhcCCcEEEEEccCHHHHHhhcCEE
Q 022337 216 LLLDEPTSALDPISTQNIE-DVLVKLKKKHGMTIVMVSHSIKQIQRIADVV 265 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~-~~l~~l~~~~g~tii~itHd~~~~~~~~d~v 265 (298)
+||||||+|||+.....+. .++..+.++.|.|+|++||+++.+ .+||+.
T Consensus 756 lLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~ 805 (918)
T 3thx_B 756 VILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY 805 (918)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence 9999999999999999987 667777655699999999998866 466653
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.87 E-value=1.8e-25 Score=194.20 Aligned_cols=146 Identities=16% Similarity=0.094 Sum_probs=118.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc---ccHHHHhHhCcc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE---GTVVDNIRYGPQ 163 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~---~tv~eni~~~~~ 163 (298)
.++|+++||+||||||||||+++|+|++.| .++|++|++.+++ .++.++..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 5899999987763 388888766432
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH----HHHHHHHHHHcCCCCeEEEeCcCCC-------CCHHHHHH
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ----AQRVALARTLANEPEVLLLDEPTSA-------LDPISTQN 232 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq----kQRv~iAral~~~p~illLDEPts~-------LD~~~~~~ 232 (298)
.. ...+.+++.++++.+++.+ ..+.++.++|+|| +||+++|++++.+|+++++||||++ ||+.....
T Consensus 61 ~~-~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~ 138 (211)
T 3asz_A 61 HP-DAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER 138 (211)
T ss_dssp SG-GGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred Ch-hhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence 11 1224566788888888863 5567788999996 4789999999999999999999999 99999999
Q ss_pred HHHHHHHHHhcCCcEEEEEccCHH
Q 022337 233 IEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
+.+.+.+..++.|.|+++++|+..
T Consensus 139 ~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 139 FIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999998865445899999999853
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.87 E-value=5.1e-24 Score=200.44 Aligned_cols=167 Identities=18% Similarity=0.199 Sum_probs=116.5
Q ss_pred CCcceeee-eEEEeCCcEEEEEcCCCccHHHHHHHHhcCC--CCCc----cE-EEECCEeCCCCCHHHHhcceEEEeCCC
Q 022337 76 GAPILKGV-NMEIPKGVIMGIIGPSGSGKSTLLRALNRLW--EPPS----GT-VFLDGRDITDLDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 76 ~~~vL~~i-sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~--~p~~----G~-I~i~g~~i~~~~~~~~~~~ig~v~Q~~ 147 (298)
+.+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |. |++++++.. . ++++++++|.+
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~----~~~i~~i~q~~ 189 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNR 189 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--C----HHHHHHHHHTT
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--C----HHHHHHHHHHc
Confidence 34567666 6899999999999999999999999999998 6776 68 899987641 1 35688899998
Q ss_pred CCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc-------CCCCeEEEeC
Q 022337 148 ALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA-------NEPEVLLLDE 220 (298)
Q Consensus 148 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~-------~~p~illLDE 220 (298)
.+++.++.+|+.+.... . |.+|+|++.++++++ .+|+++|+||
T Consensus 190 ~~~~~~v~~ni~~~~~~-----~-------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs 239 (349)
T 1pzn_A 190 GLDPDEVLKHIYVARAF-----N-------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 239 (349)
T ss_dssp TCCHHHHGGGEEEEECC-----S-------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEET
T ss_pred CCCHHHHhhCEEEEecC-----C-------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence 87777888888764211 1 233455555555555 7899999999
Q ss_pred cCCCCCHHH------------HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeC
Q 022337 221 PTSALDPIS------------TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLK 278 (298)
Q Consensus 221 Pts~LD~~~------------~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~ 278 (298)
||+++|+.. ..+++..|++++++.|+|||+++|.......+++...+...|++++++.
T Consensus 240 ~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 240 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp SSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred chHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999999862 4667777788877779999999999876654444555666676655443
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.87 E-value=1.6e-25 Score=224.73 Aligned_cols=189 Identities=20% Similarity=0.285 Sum_probs=119.0
Q ss_pred eEEEEeEEEEeCCC-Ccceeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCC-
Q 022337 63 KFRVRELRKESDDG-APILKGV----------NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDIT- 129 (298)
Q Consensus 63 ~l~~~~l~~~y~~~-~~vL~~i----------sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~- 129 (298)
.++++|+++.|..+ +++|+.+ +++++. +||+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 58899999999532 2355544 366665 999999999999999999999989 8999999999862
Q ss_pred -CC-CHHHHhcceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHH
Q 022337 130 -DL-DVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALA 206 (298)
Q Consensus 130 -~~-~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iA 206 (298)
.. ....+++.+||+||++.+++. ||.+|+.+.... +...+- .+| ++++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~-------------~~~~~~----------~~s---~~~i~l~ 140 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA-------------IAGEGM----------GIS---HELITLE 140 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH-------------HHCSSS----------CCC---SCCEEEE
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH-------------hcCCcc----------ccc---hHHHHHH
Confidence 11 123467889999999998875 999999764211 000000 011 1223333
Q ss_pred HHHcCCCCeEEEeCc------CCCCCHHHHHHHHHHHHHHH-hcCCcEEEEEccCHHH--------HHhh----cCEEEE
Q 022337 207 RTLANEPEVLLLDEP------TSALDPISTQNIEDVLVKLK-KKHGMTIVMVSHSIKQ--------IQRI----ADVVCL 267 (298)
Q Consensus 207 ral~~~p~illLDEP------ts~LD~~~~~~~~~~l~~l~-~~~g~tii~itHd~~~--------~~~~----~d~v~v 267 (298)
.+....|+++|+||| |+|||+..+..+.++++++. +..+.+++++|||++. +..+ +..|+|
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 444568999999999 99999999999999999964 4457889999999763 2222 245788
Q ss_pred EeCCEEEEeeChh
Q 022337 268 LVNGEIVEVLKPD 280 (298)
Q Consensus 268 l~~G~i~~~g~~~ 280 (298)
+.++.++..|+.+
T Consensus 221 lTK~Dlv~~g~~~ 233 (608)
T 3szr_A 221 LTKPDLVDKGTED 233 (608)
T ss_dssp EECGGGSSSSSTT
T ss_pred ecchhhcCcccHH
Confidence 8888777666644
No 108
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.87 E-value=2.2e-23 Score=213.47 Aligned_cols=146 Identities=20% Similarity=0.259 Sum_probs=110.5
Q ss_pred CeEEEEeEEEEeC--CCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCccEEEECCEeCCCCCHHHHhc
Q 022337 62 PKFRVRELRKESD--DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 62 ~~l~~~~l~~~y~--~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p~~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+.+++++.....- ++..+++|+||+ |++++|+||||||||||+|+|+|+.. |+.|.+. + ..+.
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a~~~ 614 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--AEEA 614 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--SSEE
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--hhcc
Confidence 4578887743220 235799999999 99999999999999999999999874 6778652 1 1134
Q ss_pred ceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH--cCCCCe
Q 022337 139 KVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL--ANEPEV 215 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral--~~~p~i 215 (298)
.+++++| +|+. ++.||+.. .+|+|++|++.+|+++ +.+|++
T Consensus 615 ~i~~v~~---i~~~~~~~d~l~~---------------------------------g~S~~~~e~~~la~il~~a~~p~L 658 (765)
T 1ewq_A 615 HLPLFDG---IYTRIGASDDLAG---------------------------------GKSTFMVEMEEVALILKEATENSL 658 (765)
T ss_dssp EECCCSE---EEEECCC---------------------------------------CCSHHHHHHHHHHHHHHHCCTTEE
T ss_pred ceeeHHH---hhccCCHHHHHHh---------------------------------cccHHHHHHHHHHHHHHhccCCCE
Confidence 5787776 3432 55555432 3588999999999999 999999
Q ss_pred EEEeCc---CCCCCHHHH-HHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 216 LLLDEP---TSALDPIST-QNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 216 llLDEP---ts~LD~~~~-~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
+||||| |++||+.+. ..+.+.|.+ .|.|+|++||+.+.+ .+|
T Consensus 659 lLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~-~~~ 704 (765)
T 1ewq_A 659 VLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYFELT-ALG 704 (765)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHH-TCC
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH-Hhh
Confidence 999999 999999876 578888765 288999999999876 455
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.86 E-value=3.8e-25 Score=191.22 Aligned_cols=159 Identities=16% Similarity=0.214 Sum_probs=111.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL 169 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 169 (298)
|++++|+||||||||||+++|+|+++ ++| |.++|.++... ..+++++||++|+.. .+ ++++. .+. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~~---g~-~~~l~---~~~-~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTLS---GT-RGPLS---RVG-LEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEETT---SC-EEEEE---ECC-CCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEecc---cc-eehhh---ccc-ccC
Confidence 78999999999999999999999999 999 99999887543 245788999999862 11 11111 000 000
Q ss_pred cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH-HHHH---HHcCCCCeEEEeC--cCCCCCHHHHHHHHHHHHHHHhc
Q 022337 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV-ALAR---TLANEPEVLLLDE--PTSALDPISTQNIEDVLVKLKKK 243 (298)
Q Consensus 170 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv-~iAr---al~~~p~illLDE--Pts~LD~~~~~~~~~~l~~l~~~ 243 (298)
. ..... ....++...+|+|||+++ ++++ |++.+|++||+|| |+..+|+...+.+.+++. .
T Consensus 69 ~---------~~~~~-~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~ 134 (189)
T 2i3b_A 69 P---------PGKRE-CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T 134 (189)
T ss_dssp C---------SSSCC-EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C
T ss_pred C---------ccccc-cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C
Confidence 0 00011 134556778999999988 5555 6899999999999 899999976666555554 3
Q ss_pred CCcEEEE----EccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 244 HGMTIVM----VSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 244 ~g~tii~----itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
..++|+ ++||.+ ..++|+|..+.+|+|+...
T Consensus 135 -~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 135 -PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp -SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred -CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 334553 449874 2456777777899998754
No 110
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.85 E-value=7.7e-26 Score=213.57 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=129.1
Q ss_pred ceeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHhcCCCCCc----cEEEEC----CEeCCCCCHHHHhcceEEEeCCCC
Q 022337 79 ILKGVNMEIPK--GVIMGIIGPSGSGKSTLLRALNRLWEPPS----GTVFLD----GRDITDLDVLSLRRKVGMLFQIPA 148 (298)
Q Consensus 79 vL~~isl~i~~--Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~----G~I~i~----g~~i~~~~~~~~~~~ig~v~Q~~~ 148 (298)
+.+.|+++|.+ |+.++|+||||||||||+|+|+|+++|++ |+|+++ |.++ ..+..++ +.|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 998873 4444 2333334 45888888776
Q ss_pred CCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc-CCCCeEEEeC---cC--
Q 022337 149 LFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA-NEPEVLLLDE---PT-- 222 (298)
Q Consensus 149 l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~-~~p~illLDE---Pt-- 222 (298)
++..|+.+|+.++.. ... +..+..+|+|++||..+++++. .+|++++||| |+
T Consensus 235 ~~~~t~~~nl~~~~~----~~~------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~ 292 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT----DFI------------------TTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 292 (365)
T ss_dssp HHHHHHCSSEEEESS----CHH------------------HHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC---
T ss_pred HHHHhccCCEEEEeC----Cch------------------HHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCccc
Confidence 666688888765421 100 0111234567788888888874 6999999999 65
Q ss_pred ----CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 223 ----SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 223 ----s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
.++|+..+..+.+.|+++.++.|.++++++|. +...++|+++.++++ ++..++++++
T Consensus 293 ~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 293 DGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp --------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH--HhcccchhHh
Confidence 58999999999999988766558899999986 456678888877754 4445555555
No 111
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.84 E-value=3.1e-22 Score=205.97 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=113.8
Q ss_pred CeEEEEeEEEEe----CCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEECCEeCCCCCHHHH
Q 022337 62 PKFRVRELRKES----DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFLDGRDITDLDVLSL 136 (298)
Q Consensus 62 ~~l~~~~l~~~y----~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i~g~~i~~~~~~~~ 136 (298)
+.+.+++...-. .+++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ +.|. .+.. .
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~ 643 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----Q 643 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----S
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----h
Confidence 457777654211 0345799999999 99999999999999999999999997432 2221 1111 1
Q ss_pred hcceEEEeCCCCCCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 137 RRKVGMLFQIPALFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 137 ~~~ig~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
+..+++++| +|.. ++.||+..+ .+++|+++++ ++.+...+.+|++
T Consensus 644 ~~~i~~~~~---i~~~~~~~d~l~~~------------------------------~stf~~e~~~-~~~il~~a~~psL 689 (800)
T 1wb9_A 644 KVEIGPIDR---IFTRVGAADDLASG------------------------------RSTFMVEMTE-TANILHNATEYSL 689 (800)
T ss_dssp EEEECCCCE---EEEEEC-----------------------------------------CHHHHHH-HHHHHHHCCTTEE
T ss_pred cccceeHHH---HHhhCCHHHHHHhh------------------------------hhhhhHHHHH-HHHHHHhccCCCE
Confidence 234566554 3332 444444221 1245666654 4445556899999
Q ss_pred EEEeCcCCCCCHHHHHHH-HHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEee
Q 022337 216 LLLDEPTSALDPISTQNI-EDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~-~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g 277 (298)
+|||||++|+|+.....+ .+++..+.++.|.++|++||+.+.+ .+||++..+.+|++....
T Consensus 690 lLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 690 VLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDALE 751 (800)
T ss_dssp EEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEEEE
T ss_pred EEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEEEE
Confidence 999999999999877775 6778887654589999999999876 589988777777765543
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.83 E-value=3.1e-21 Score=175.20 Aligned_cols=154 Identities=15% Similarity=0.178 Sum_probs=110.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH-hCccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR-YGPQL 164 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~-~~~~~ 164 (298)
-+++|++++|+||||||||||++.+++... .|.+ +.|.+... ...+.|+..+... ..+...+. ++.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-- 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-- 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT--
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh--
Confidence 378999999999999999999999998664 5666 33544311 2457787665432 12322222 221
Q ss_pred cCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC--CCCHHHH---HHHHHHHHH
Q 022337 165 RGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS--ALDPIST---QNIEDVLVK 239 (298)
Q Consensus 165 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts--~LD~~~~---~~~~~~l~~ 239 (298)
........++++.+++. +..++++..||+||+|++ ++++.+|+++++||||+ ++|+... ..+++.|++
T Consensus 93 ---~~~~~~~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~ 165 (279)
T 1nlf_A 93 ---HLSAEERQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 165 (279)
T ss_dssp ---TSCHHHHHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred ---hcChhhhhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence 12234466678888886 456788999999998865 68889999999999999 9998544 888899999
Q ss_pred HHhcCCcEEEEEccCHHHHH
Q 022337 240 LKKKHGMTIVMVSHSIKQIQ 259 (298)
Q Consensus 240 l~~~~g~tii~itHd~~~~~ 259 (298)
++++.|+|||+++|+.....
T Consensus 166 l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHCCEEEEEEEC-----
T ss_pred HHHHcCCEEEEEecCCCccc
Confidence 87666999999999987653
No 113
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.81 E-value=3e-21 Score=182.06 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=99.7
Q ss_pred eEEEEeCC-CCcceeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhc
Q 022337 68 ELRKESDD-GAPILKGVNM-------EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRR 138 (298)
Q Consensus 68 ~l~~~y~~-~~~vL~~isl-------~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~ 138 (298)
+++++|.. ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ .|.|...+.++ ++. .+.
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~~ 168 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HES 168 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CCC
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hhc
Confidence 45555422 2356777776 67899999999999999999999999999997 56665443332 221 123
Q ss_pred ceEEEeCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 139 KVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
..++++|....... ++..+ +|||||.++|++|++
T Consensus 169 ~~~~v~q~~~~~~~------------------------------------------~~~~~----~La~aL~~~Pdvill 202 (356)
T 3jvv_A 169 KKCLVNQREVHRDT------------------------------------------LGFSE----ALRSALREDPDIILV 202 (356)
T ss_dssp SSSEEEEEEBTTTB------------------------------------------SCHHH----HHHHHTTSCCSEEEE
T ss_pred cccceeeeeecccc------------------------------------------CCHHH----HHHHHhhhCcCEEec
Confidence 34555553211100 00000 999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCC
Q 022337 219 DEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNG 271 (298)
Q Consensus 219 DEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G 271 (298)
|||| |+...+ .+.+.++ .|.|+++++|+.+.+ ..|||++.|..|
T Consensus 203 DEp~---d~e~~~----~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 203 GEMR---DLETIR----LALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp SCCC---SHHHHH----HHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred CCCC---CHHHHH----HHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 9999 665544 3334444 399999999999987 679998877543
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.81 E-value=8.4e-22 Score=189.37 Aligned_cols=165 Identities=15% Similarity=0.180 Sum_probs=100.1
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
.++.++||++.|+ ++.+++++||+| +|+||||||||||+++|+|+..|+.| .+|..+...+ ...+..++
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEE
Confidence 4689999999994 578999999998 99999999999999999999987666 2333222111 11135689
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCC---eEE
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPE---VLL 217 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~---ill 217 (298)
+++|++.++. .|+.||+.++...... .....+.+.++ ..++.+++||++||||++.+|+ +|+
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~~~~~-~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ 144 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDAVDNS-NCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLY 144 (418)
T ss_dssp CC------CEEEEEEECC------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEE
T ss_pred EEEecCCcccceeeeechhhhhhccch-hhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEE
Confidence 9999988775 5999999876432110 00011111111 1355677889999999999999 999
Q ss_pred EeCcC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHH
Q 022337 218 LDEPT-SALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 218 LDEPt-s~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~ 257 (298)
+|||| ++||+... ++++++.. +.++|+|.|..+.
T Consensus 145 ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK~Dl 179 (418)
T 2qag_C 145 FIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAKADT 179 (418)
T ss_dssp ECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEESTTS
T ss_pred EecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEcccC
Confidence 99999 69999863 34455543 6788888877653
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.80 E-value=1.5e-19 Score=156.78 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=104.3
Q ss_pred CcceeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 77 APILKGVNM-EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 77 ~~vL~~isl-~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
.+.|+.+.. -+++|++++|+||||||||||++.+++ .+..+.++++. +..+.+..+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~--------------------~~~~~~~~~~ 63 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT--------------------EGGFSPERLV 63 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES--------------------SCCCCHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC--------------------CCCCCHHHHH
Confidence 456777765 799999999999999999999999999 33333333332 2211111222
Q ss_pred HHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH--HHHHHHHHHHcCC-CCeEEEeCcCCCCCHHH---
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ--AQRVALARTLANE-PEVLLLDEPTSALDPIS--- 229 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--kQRv~iAral~~~-p~illLDEPts~LD~~~--- 229 (298)
+.... .+. ..+ ++++.+ .+.++|+++ +|+++.+++++.+ |+++++||||+.+|+..
T Consensus 64 ~~~~~----~~~--~~~---~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~ 125 (220)
T 2cvh_A 64 QMAET----RGL--NPE---EALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRS 125 (220)
T ss_dssp HHHHT----TTC--CHH---HHHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSS
T ss_pred HHHHh----cCC--ChH---HHhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchH
Confidence 21110 011 111 122222 122445553 6788999999986 99999999999999743
Q ss_pred -----HHHHHHHHHHHHhcCCcEEEEEccCHH-------------HHHhhcCEEEEEeCC
Q 022337 230 -----TQNIEDVLVKLKKKHGMTIVMVSHSIK-------------QIQRIADVVCLLVNG 271 (298)
Q Consensus 230 -----~~~~~~~l~~l~~~~g~tii~itHd~~-------------~~~~~~d~v~vl~~G 271 (298)
..++++.|++++++.|.|+|+++|... .+..+||++++|+..
T Consensus 126 ~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 126 GLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 245666688887767999999999865 577899999999864
No 116
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.78 E-value=1.9e-20 Score=165.23 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=100.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cH----HHH
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TV----VDN 157 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv----~en 157 (298)
-..++|++++|+||||||||||+|+|+|+++| ..|.|.+.+++... ..+..++|+||++.+|+. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 68999998876532 124679999998877653 55 455
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHH
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l 237 (298)
+.+....++. ..+.+. .++..++++||| ||+.++..+.+.+
T Consensus 87 ~~~~~~~yg~--~~~~v~--------------------------------~~l~~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 87 AEVFGNYYGT--SREAIE--------------------------------QVLATGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp EEETTEEEEE--EHHHHH--------------------------------HHHTTTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHHHhccCCC--CHHHHH--------------------------------HHHhcCCeEEEE-----ECHHHHHHHHHHc
Confidence 4432221111 112222 223347999999 9999999999887
Q ss_pred HHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCEEEEeeChhhh
Q 022337 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGEIVEVLKPDLL 282 (298)
Q Consensus 238 ~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~i~~~g~~~~~ 282 (298)
. .+.||+++||+++.+.. |+ +..| .++++++
T Consensus 128 ~-----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i 158 (219)
T 1s96_A 128 P-----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVI 158 (219)
T ss_dssp T-----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHH
T ss_pred c-----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHH
Confidence 5 28999999999998765 43 5667 4566655
No 117
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.78 E-value=9.3e-21 Score=182.03 Aligned_cols=177 Identities=16% Similarity=0.188 Sum_probs=116.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVI--MGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVG 141 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~--~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig 141 (298)
+++++ ++.|+ +.+ |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++........++.++
T Consensus 17 l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~ 85 (427)
T 2qag_B 17 VPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNT 85 (427)
T ss_dssp CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEE
T ss_pred EEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEE
Confidence 56666 78884 456 9999999999999 9999999999999999999984 3454443322222345799
Q ss_pred EEeCCCCCCc-ccHHHHhHhCccccC---CCc----cHHHHHHHHHHc-CCCch---hhcCC-----------CCCCChh
Q 022337 142 MLFQIPALFE-GTVVDNIRYGPQLRG---KKL----TENEVYKLLSLA-DLDSS---FLNKT-----------GGEISVG 198 (298)
Q Consensus 142 ~v~Q~~~l~~-~tv~eni~~~~~~~~---~~~----~~~~~~~~l~~~-~l~~~---~~~~~-----------~~~LSgG 198 (298)
|++|++.+++ .|+.||+.++..... ... ....+.+.++.. ++... ..+.+ ...|+-.
T Consensus 86 ~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~ 165 (427)
T 2qag_B 86 YDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSL 165 (427)
T ss_dssp EEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHH
T ss_pred EEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHH
Confidence 9999998876 599999988753210 000 012344455544 43210 11111 1245655
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHH-HHhcCCcEEEEEccCH
Q 022337 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK-LKKKHGMTIVMVSHSI 255 (298)
Q Consensus 199 qkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~-l~~~~g~tii~itHd~ 255 (298)
. +.++++|..+++++++|||+..|.+.....+.+.+++ +. ..|.+|+.+|.|-
T Consensus 166 D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~d 219 (427)
T 2qag_B 166 D---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTDD 219 (427)
T ss_dssp H---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC---
T ss_pred H---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCCc
Confidence 5 7999999999999999999999999999999999987 54 4699999999763
No 118
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.77 E-value=1.2e-18 Score=148.34 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=71.4
Q ss_pred hcCCCCCCChhHHHHHHHHHHHc----CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcC
Q 022337 188 LNKTGGEISVGQAQRVALARTLA----NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIAD 263 (298)
Q Consensus 188 ~~~~~~~LSgGqkQRv~iAral~----~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d 263 (298)
..+.+..||||||||++|||+|+ .+|+++||||||++||+.++..+.+.|+++.+ +.++|+|||+.... .+||
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~-~~ad 134 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMM-ANAD 134 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHH-TTCS
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHH-HhCC
Confidence 34567899999999999999997 45799999999999999999999999999864 56899999998755 6899
Q ss_pred EEEEE--eCCEE
Q 022337 264 VVCLL--VNGEI 273 (298)
Q Consensus 264 ~v~vl--~~G~i 273 (298)
+++.+ .+|..
T Consensus 135 ~i~~v~~~~g~s 146 (173)
T 3kta_B 135 KIIGVSMRDGVS 146 (173)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCEE
Confidence 99855 47753
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.76 E-value=7.2e-21 Score=169.57 Aligned_cols=144 Identities=21% Similarity=0.211 Sum_probs=105.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHh---cCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCcc-
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALN---RLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGPQ- 163 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~---gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~~- 163 (298)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ......+++++|++.+++. ++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988876532 1233456677888877765 89999875321
Q ss_pred -------ccCCCccHHHHHHHHHHcCCC-------------chhhcCCCCCCChhHHHHHHHHHHH-cCCCCeEEEe---
Q 022337 164 -------LRGKKLTENEVYKLLSLADLD-------------SSFLNKTGGEISVGQAQRVALARTL-ANEPEVLLLD--- 219 (298)
Q Consensus 164 -------~~~~~~~~~~~~~~l~~~~l~-------------~~~~~~~~~~LSgGqkQRv~iAral-~~~p~illLD--- 219 (298)
..+......++..+......+ ..+.++++.+||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 112222222333332222211 2345677889999 66 788 9999999999
Q ss_pred -CcCCCCCHHHHHHHHHHHHHHHhc
Q 022337 220 -EPTSALDPISTQNIEDVLVKLKKK 243 (298)
Q Consensus 220 -EPts~LD~~~~~~~~~~l~~l~~~ 243 (298)
|||++||+.+++.+.+.+.++.++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988653
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.76 E-value=1.4e-20 Score=177.60 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=113.2
Q ss_pred EEEeEEEE---eCC-CCcce---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC
Q 022337 65 RVRELRKE---SDD-GAPIL---------KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL 131 (298)
Q Consensus 65 ~~~~l~~~---y~~-~~~vL---------~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~ 131 (298)
++++++|. |++ +.++| +++||++++|++++|+||||||||||+++|+|+++|++|.|.++|.. ++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence 66777776 642 12355 99999999999999999999999999999999999999999999742 33
Q ss_pred CHHHHhcceEEEe-CCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc
Q 022337 132 DVLSLRRKVGMLF-QIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA 210 (298)
Q Consensus 132 ~~~~~~~~ig~v~-Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~ 210 (298)
.....++.+++++ |++.+ + ++++..+|..|++++.
T Consensus 215 ~~~~~~~~v~~v~~q~~~~--------------------------------~------------~~~~~t~~~~i~~~l~ 250 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKE--------------------------------E------------ENAPVTAATLLRSCLR 250 (361)
T ss_dssp CCTTCSSEEEEECC------------------------------------------------------CCHHHHHHHHTT
T ss_pred CccccCCEEEEeecCcccc--------------------------------c------------cccccCHHHHHHHHHh
Confidence 3333567789998 65421 0 1233357888999999
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
.+|+.+++|||.. .+..+.|..+... ..|++.++|+.+ +...+||+..+..|.
T Consensus 251 ~~pd~~l~~e~r~-------~~~~~~l~~l~~g-~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 251 MKPTRILLAELRG-------GEAYDFINVAASG-HGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp SCCSEEEESCCCS-------THHHHHHHHHHTT-CCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred cCCCEEEEcCchH-------HHHHHHHHHHhcC-CCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 9999999999986 3455667666432 457899999965 667789988887763
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.76 E-value=1.1e-21 Score=167.22 Aligned_cols=149 Identities=21% Similarity=0.179 Sum_probs=99.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
.+++|++++|+||||||||||+|+|+|. |+.|.|.++|.++.... ..++.++|++|++. ...++.+|+.+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999998 78999999987653211 11234678887654 2348889887642110
Q ss_pred ---CCCccHHHHHHHHHHcCCCchhh--cCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHH
Q 022337 166 ---GKKLTENEVYKLLSLADLDSSFL--NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240 (298)
Q Consensus 166 ---~~~~~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l 240 (298)
+... .++.++...++. .+. +..+..+|+|++||+++||++.++|+++ +|+...+.+.+.+..+
T Consensus 80 ~~~~~~~---~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 80 AKEGYFV---ILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHTSCEE---EECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred hccCCeE---EEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 0000 000011112221 122 3455689999999999999999999876 6888888888887766
Q ss_pred HhcCCcEEEEEc
Q 022337 241 KKKHGMTIVMVS 252 (298)
Q Consensus 241 ~~~~g~tii~it 252 (298)
.+ .+..+|.++
T Consensus 148 ~~-~~~~~i~t~ 158 (191)
T 1zp6_A 148 GA-FEHHVLPVS 158 (191)
T ss_dssp GG-GGGGEEECT
T ss_pred Cc-ccccEEECC
Confidence 43 233344444
No 122
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.76 E-value=1.3e-23 Score=179.48 Aligned_cols=172 Identities=14% Similarity=0.051 Sum_probs=114.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCccccCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKK 168 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~ 168 (298)
|++++|+||||||||||+|+|++ |.+|.++++|.++... ...++++|....++ .++++|+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLTVNFLLA 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999998 7789999988665321 24577777664333 38888886532110000
Q ss_pred ccHHHHHHHHHHcCCCchhhcCCCCCC--ChhHHHHHHHHH------HHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHH
Q 022337 169 LTENEVYKLLSLADLDSSFLNKTGGEI--SVGQAQRVALAR------TLANEPEVLLLDEPTSALDPISTQNIEDVLVKL 240 (298)
Q Consensus 169 ~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGqkQRv~iAr------al~~~p~illLDEPts~LD~~~~~~~~~~l~~l 240 (298)
.. ..+++.+.. .... +...++ |+||+|++.++. +++.+|+...+|+ ++|+...+. ++.+.++
T Consensus 73 ~~----~~ild~~~~-~~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~ 142 (189)
T 2bdt_A 73 QN----DVVLDYIAF-PDEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESK 142 (189)
T ss_dssp TC----EEEEESCCC-HHHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHT
T ss_pred CC----cEEEeeccC-HHHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhc
Confidence 00 000111111 0001 111234 889999988888 9999999888884 899988888 8888887
Q ss_pred HhcCCcEEEEEccC-HHHHHhhcCEEEEEeCCEEEEeeChhhhh
Q 022337 241 KKKHGMTIVMVSHS-IKQIQRIADVVCLLVNGEIVEVLKPDLLS 283 (298)
Q Consensus 241 ~~~~g~tii~itHd-~~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 283 (298)
.+ .+.++|.+||. ++.+.++||+|+ ++|+++..|+++-+.
T Consensus 143 ~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 143 GI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp TC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred CC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 54 47899999999 999999999998 999999999877553
No 123
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=9.1e-19 Score=154.05 Aligned_cols=148 Identities=18% Similarity=0.306 Sum_probs=91.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhc--CCCC-----CccEEEECCEeCCCC-CHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNR--LWEP-----PSGTVFLDGRDITDL-DVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~g--l~~p-----~~G~I~i~g~~i~~~-~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
-|++|++++|+||||||||||++.|++ +.+| ..|.+++++.+.... ....+.+.+++.+| .+.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS-------DVLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-------HHhhC
Confidence 489999999999999999999999999 6665 578888887652110 01122333444333 23444
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH-HHHHHHHHc--CCCCeEEEeCcCCCCCHH------
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ-RVALARTLA--NEPEVLLLDEPTSALDPI------ 228 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ-Rv~iAral~--~~p~illLDEPts~LD~~------ 228 (298)
+.+.. ..+..+.. .+.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~ 141 (243)
T 1n0w_A 93 VAYAR-------------------------------AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGE 141 (243)
T ss_dssp EEEEE-------------------------------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------C
T ss_pred eEEEe-------------------------------cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCcc
Confidence 33211 11222211 111122222 689999999999999985
Q ss_pred -H-----HHHHHHHHHHHHhcCCcEEEEEccCHHHHHh-------------------hcCEEEEEeCC
Q 022337 229 -S-----TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQR-------------------IADVVCLLVNG 271 (298)
Q Consensus 229 -~-----~~~~~~~l~~l~~~~g~tii~itHd~~~~~~-------------------~~d~v~vl~~G 271 (298)
. ...++..|++++++.|+|||+++|....... +||++++|+.|
T Consensus 142 ~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 142 LSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 3456667777776679999999997765443 79999999865
No 124
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.75 E-value=3.4e-19 Score=166.24 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=117.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH----HHhc--ceEEEeCCCCCCcc-cHHHHh
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL----SLRR--KVGMLFQIPALFEG-TVVDNI 158 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~----~~~~--~ig~v~Q~~~l~~~-tv~eni 158 (298)
..++|++++|+||||||||||+++|+|+++|++|+|.+.|.|+.+.... .+++ .+.+++|...+++. ++++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4478999999999999999999999999999999999999998765532 2233 35699999988875 999999
Q ss_pred HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHH
Q 022337 159 RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~ 238 (298)
.++... +.+. -+++..|.. +.......+|| .++|++..++.+++||.++. ..+.+.++
T Consensus 205 ~~~~~~-~~d~------vliDtaG~~-~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~~~~ 262 (328)
T 3e70_C 205 QHAKAR-GIDV------VLIDTAGRS-ETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVEQAR 262 (328)
T ss_dssp HHHHHH-TCSE------EEEEECCSC-CTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHHHHH
T ss_pred HHHHhc-cchh------hHHhhccch-hHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHHHHH
Confidence 875321 0000 012223432 12222233333 48999998888888886654 35555666
Q ss_pred HHHhcCCcEEEEEccCH---------HHHHhhcCEEEEEeCCEEE
Q 022337 239 KLKKKHGMTIVMVSHSI---------KQIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 239 ~l~~~~g~tii~itHd~---------~~~~~~~d~v~vl~~G~i~ 274 (298)
.+.+..+.|+|++||.- +.+....-.|.++..|+-+
T Consensus 263 ~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 263 QFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 66655689999999953 2344555678888888755
No 125
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.75 E-value=6.8e-22 Score=185.09 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=122.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHHHhc
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----VLSLRR 138 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----~~~~~~ 138 (298)
+++++++++.|. +..+|+++||++++|++++|+||||||||||+++|+|++.|++|+|.+.|.++.... ....++
T Consensus 29 ~ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 29 LAESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HHTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HHeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 477888888884 457999999999999999999999999999999999999999999999998874321 112456
Q ss_pred ceEEEeCCCCCCcc-------------cHHHHhH-----------------------------hCccccCCC-ccH-H--
Q 022337 139 KVGMLFQIPALFEG-------------TVVDNIR-----------------------------YGPQLRGKK-LTE-N-- 172 (298)
Q Consensus 139 ~ig~v~Q~~~l~~~-------------tv~eni~-----------------------------~~~~~~~~~-~~~-~-- 172 (298)
++++++|++.+|.. ++.|.+. +........ .+. +
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 79999999987642 1233221 000000000 000 0
Q ss_pred --HHHHHHHHcCCCchhhcC-CCCCCChhHHHHHHHHHHHcC------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh
Q 022337 173 --EVYKLLSLADLDSSFLNK-TGGEISVGQAQRVALARTLAN------EPEVLLLDEPTSALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 173 --~~~~~l~~~~l~~~~~~~-~~~~LSgGqkQRv~iAral~~------~p~illLDEPts~LD~~~~~~~~~~l~~l~~ 242 (298)
.+.+....+.+. ..|. ...++|+|++|++..|++++. +|+++. +|++|+....++++.|.++.+
T Consensus 188 ~~~i~~~~~ivvlN--K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 188 KKGIFELADMIAVN--KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CTTHHHHCSEEEEE--CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhccccEEEEE--chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 011111122221 2232 234689999999999999997 688876 999999999999999988754
No 126
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.75 E-value=1e-19 Score=177.23 Aligned_cols=156 Identities=18% Similarity=0.240 Sum_probs=109.2
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHH--HhcceEEEeCCCCCCcc-
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD----VLS--LRRKVGMLFQIPALFEG- 152 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~----~~~--~~~~ig~v~Q~~~l~~~- 152 (298)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+..+.. ... .|++++|++|++.+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887765421 112 35679999999887764
Q ss_pred cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc-CCC-CeEEEeCcCCCCCHHHH
Q 022337 153 TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA-NEP-EVLLLDEPTSALDPIST 230 (298)
Q Consensus 153 tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~-~~p-~illLDEPts~LD~~~~ 230 (298)
++++|+.++.. .+.+. -+++..|... .......+| +|++.++|++. ..| ++||..+|++|.|..
T Consensus 363 tV~e~l~~a~~-~~~Dv------VLIDTaGrl~-~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al-- 428 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNIDV------LIADTAGRLQ-NKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-- 428 (503)
T ss_dssp HHHHHHHHHHH-TTCSE------EEECCCCSCC-CHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--
T ss_pred HHHHHHHHHHh-cCCCE------EEEeCCCccc-hhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--
Confidence 99999987632 11110 0123333321 111111223 48899999875 446 466666688886554
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcc
Q 022337 231 QNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 231 ~~~~~~l~~l~~~~g~tii~itH 253 (298)
+.++.+.+..+.|.+++||
T Consensus 429 ----~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 429 ----SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp ----HHHHHHHHHTCCSEEEEEC
T ss_pred ----HHHHHHHhhcCCCEEEEEc
Confidence 3344454445899999999
No 127
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.75 E-value=2.8e-22 Score=186.16 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=110.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC--------CCCccEEEECCEeCCCCC---------------HHHHhcceEEE---e
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW--------EPPSGTVFLDGRDITDLD---------------VLSLRRKVGML---F 144 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~--------~p~~G~I~i~g~~i~~~~---------------~~~~~~~ig~v---~ 144 (298)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999886542 22455668887 6
Q ss_pred CCCCCC-cccHHHHhHhCccc---cCCCccHH-----HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCe
Q 022337 145 QIPALF-EGTVVDNIRYGPQL---RGKKLTEN-----EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEV 215 (298)
Q Consensus 145 Q~~~l~-~~tv~eni~~~~~~---~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~i 215 (298)
|++.++ ..++.||..++... .......+ ++..++..+++. ++.++.. +||+||+||+..+++++.+|++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~-~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAV-HADEQMN-QFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETT-THHHHHH-HCHHHHHHHHTCSEEEEECTTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHH-HHHHHHh-hchHHHHHHHhCCEEEEECccc
Confidence 877653 45888888765210 00000000 011122334443 2333333 7999999999999999999998
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhh
Q 022337 216 LLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 216 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~ 261 (298)
+ ||| +.+.+.|+++. .+.||+++||+...+..+
T Consensus 163 ~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 163 A--GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp C--SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGG
T ss_pred C--CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHH
Confidence 7 999 78888888874 389999999965444433
No 128
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.74 E-value=1.5e-19 Score=171.43 Aligned_cols=127 Identities=19% Similarity=0.209 Sum_probs=96.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~---------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE---------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee----------
Confidence 566655 7899999999999999999999999999998 899988776553 2 2456788888841
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHH
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVL 237 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l 237 (298)
+|++ +..| +.+|+++|..+|+++++|||+ |+.... .++
T Consensus 191 -----------------------~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l 228 (372)
T 2ewv_A 191 -----------------------VGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TAL 228 (372)
T ss_dssp -----------------------BTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHH
T ss_pred -----------------------cCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHH
Confidence 2221 1233 469999999999999999999 776543 344
Q ss_pred HHHHhcCCcEEEEEccCHHHHHhhcCEEE
Q 022337 238 VKLKKKHGMTIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 238 ~~l~~~~g~tii~itHd~~~~~~~~d~v~ 266 (298)
+.. . .|.+++.++|+.+ +...|||++
T Consensus 229 ~~~-~-~g~~vi~t~H~~~-~~~~~~rl~ 254 (372)
T 2ewv_A 229 RAA-E-TGHLVFGTLHTNT-AIDTIHRIV 254 (372)
T ss_dssp HHH-T-TTCEEEECCCCCS-HHHHHHHHH
T ss_pred HHH-h-cCCEEEEEECcch-HHHHHHHHH
Confidence 433 3 4889999999966 566777753
No 129
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.72 E-value=2.4e-20 Score=158.56 Aligned_cols=135 Identities=17% Similarity=0.232 Sum_probs=87.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEeCCCCC---HHHHh-cceE----EEeCCCCCCcccHHHHhH
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRDITDLD---VLSLR-RKVG----MLFQIPALFEGTVVDNIR 159 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~i~~~~---~~~~~-~~ig----~v~Q~~~l~~~tv~eni~ 159 (298)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++.+++ ...+| +.+| +++|++.+|-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~------ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRR------ 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEE------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEec------
Confidence 589999999999999999999999998 899999999876554 34555 4677 888887655100
Q ss_pred hCccccCCCccHH--HHHHHHHH-c-CCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE-------EEeCcCC---CC
Q 022337 160 YGPQLRGKKLTEN--EVYKLLSL-A-DLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL-------LLDEPTS---AL 225 (298)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~l~~-~-~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il-------lLDEPts---~L 225 (298)
. ..+. .+.+.++. + +++ ....+ .|||||+||++||||++.+|++. .-|.|.. -+
T Consensus 77 ------~--~~~~~a~l~~~i~~~l~g~d-t~i~E---glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f 144 (171)
T 2f1r_A 77 ------V--SEEEGNDLDWIYERYLSDYD-LVITE---GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWF 144 (171)
T ss_dssp ------C--CHHHHTCHHHHHHHHTTTCS-EEEEE---SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEE
T ss_pred ------C--ChhhhhCHHHHHHhhCCCCC-EEEEC---CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCccc
Confidence 0 0111 23444444 3 454 22222 49999999999999999999873 2355532 23
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 022337 226 DPISTQNIEDVLVKLKKK 243 (298)
Q Consensus 226 D~~~~~~~~~~l~~l~~~ 243 (298)
|....+.+.+++.+...+
T Consensus 145 ~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 145 RRDEVERIAEFILSLLRE 162 (171)
T ss_dssp CTTCHHHHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHHHHhc
Confidence 444567777777666555
No 130
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.71 E-value=1.8e-20 Score=157.35 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=73.5
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
.+++++.|+ ++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ...+ .+++|
T Consensus 10 ~~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 10 DEFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp SHHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred CHHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 345667773 457999999999999999999999999999999999999 9999999999877421 1111 27999
Q ss_pred CCCCCcccHHHHhHh-Cc
Q 022337 146 IPALFEGTVVDNIRY-GP 162 (298)
Q Consensus 146 ~~~l~~~tv~eni~~-~~ 162 (298)
++.+|..|+.||+.+ +.
T Consensus 83 ~~~l~~ltv~e~l~~~g~ 100 (158)
T 1htw_A 83 HFDLYRLADPEELEFMGI 100 (158)
T ss_dssp EEECTTCSCTTHHHHSTH
T ss_pred ccccccCCcHHHHHHcCh
Confidence 998886699999954 53
No 131
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.70 E-value=1.4e-20 Score=162.99 Aligned_cols=154 Identities=19% Similarity=0.280 Sum_probs=104.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC-------------CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccH
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE-------------PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTV 154 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv 154 (298)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ .|+..++..++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5799999999999999999999999886 77887 578777666666666654 57666666677
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH----HHHHHH-HHcCCCCeEEEeCcCCCCCHHH
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ----RVALAR-TLANEPEVLLLDEPTSALDPIS 229 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ----Rv~iAr-al~~~p~illLDEPts~LD~~~ 229 (298)
.+|+ ++. ..+.+.++++..... +.+.. + .|-++ ++ .|| +++.+|++++|||||+++|..+
T Consensus 77 ~~n~-~g~-------~~~~i~~~~~~~~~~--~~~~~---~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~~~ 141 (198)
T 1lvg_A 77 SGNL-YGT-------SKEAVRAVQAMNRIC--VLDVD---L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTET 141 (198)
T ss_dssp TTEE-EEE-------EHHHHHHHHHTTCEE--EEECC---H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred cCcc-CCC-------CHHHHHHHHHcCCcE--EEECC---H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 6666 431 345566666542211 11100 0 11111 12 566 7888999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEEEeC
Q 022337 230 TQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCLLVN 270 (298)
Q Consensus 230 ~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~vl~~ 270 (298)
.+.+.+.|.+..++ +.++|. . ..+|+|+++++
T Consensus 142 e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd~ 173 (198)
T 1lvg_A 142 EESLAKRLAAARTD-----MESSKE--P--GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECSS
T ss_pred HHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECCC
Confidence 99999999887653 245672 2 46899888754
No 132
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.68 E-value=1.4e-17 Score=156.76 Aligned_cols=137 Identities=18% Similarity=0.104 Sum_probs=95.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-CCccEEEEC-CEeCCCCCHHHHhcceEEEeCCCCCCcc-cH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-PPSGTVFLD-GRDITDLDVLSLRRKVGMLFQIPALFEG-TV 154 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-p~~G~I~i~-g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv 154 (298)
.-++++++. .+|++++|+||||||||||+|+|+|+.. |+.|+|.++ |+... ...++.+++++|++.+++. ++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4899999999999999999999999999 999999987 76542 1235679999999888765 88
Q ss_pred HHHhHhCccccCCCc--cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHH
Q 022337 155 VDNIRYGPQLRGKKL--TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232 (298)
Q Consensus 155 ~eni~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~ 232 (298)
+++ +.. +... ..+.+.++++.+++. .+.++.+.+|| ||+||++||+++ +++.-.+.
T Consensus 279 ~e~---~l~--~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~ 336 (358)
T 2rcn_A 279 REF---GLW--HLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGA---------------IAETRFEN 336 (358)
T ss_dssp HTC---CCC--CCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTS---------------SCHHHHHH
T ss_pred HHh---hhc--CCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcC---------------CCHHHHHH
Confidence 884 221 2221 123456788889986 57899999999 999999999875 34444455
Q ss_pred HHHHHHHHH
Q 022337 233 IEDVLVKLK 241 (298)
Q Consensus 233 ~~~~l~~l~ 241 (298)
..+++.++.
T Consensus 337 y~~l~~e~~ 345 (358)
T 2rcn_A 337 YHRILESMA 345 (358)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555556553
No 133
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.67 E-value=5.7e-17 Score=154.95 Aligned_cols=150 Identities=14% Similarity=0.259 Sum_probs=99.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHhcCCCCCcc-----EEEECCEeCCC-CCHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLR--ALNRLWEPPSG-----TVFLDGRDITD-LDVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk--~l~gl~~p~~G-----~I~i~g~~i~~-~~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
-|++|++++|+||||||||||++ ++.++.+|+.| .+++++++... .....+++++|+.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 58999999999999999999999 45677776544 88888876321 111123344554433 56666
Q ss_pred hHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHH--cCCCCeEEEeCcCCCCCHHHH-----
Q 022337 158 IRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTL--ANEPEVLLLDEPTSALDPIST----- 230 (298)
Q Consensus 158 i~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral--~~~p~illLDEPts~LD~~~~----- 230 (298)
+.+.... ..+.. .+.+.-++.+ ..+|+++++|||++.+|+...
T Consensus 247 i~~~~~~-----~~~~~-------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l 296 (400)
T 3lda_A 247 VAYARAY-----NADHQ-------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGEL 296 (400)
T ss_dssp EEEEECC-----SHHHH-------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCH
T ss_pred EEEeccC-----ChHHH-------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccch
Confidence 6543210 11111 1111112222 257999999999999997543
Q ss_pred -------HHHHHHHHHHHhcCCcEEEEEccCH-------------------HHHHhhcCEEEEEeCCE
Q 022337 231 -------QNIEDVLVKLKKKHGMTIVMVSHSI-------------------KQIQRIADVVCLLVNGE 272 (298)
Q Consensus 231 -------~~~~~~l~~l~~~~g~tii~itHd~-------------------~~~~~~~d~v~vl~~G~ 272 (298)
.++++.|++++++.|.|||+|+|.. ..+..+||.+++|++++
T Consensus 297 ~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 297 SARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 6788889999887899999999982 23577899999998763
No 134
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.66 E-value=3.8e-18 Score=157.23 Aligned_cols=120 Identities=19% Similarity=0.148 Sum_probs=87.7
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE---CCEeCCCCCHHHHh-cceEEEeCCCCCC-----c-ccH
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL---DGRDITDLDVLSLR-RKVGMLFQIPALF-----E-GTV 154 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i---~g~~i~~~~~~~~~-~~ig~v~Q~~~l~-----~-~tv 154 (298)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++.... ...+ +.+||++|+|.+. + .|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345679999999999999999999999 99999999999 998876543 2222 3689999999653 4 488
Q ss_pred HHHh--HhCc------cccC---CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHH
Q 022337 155 VDNI--RYGP------QLRG---KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALAR 207 (298)
Q Consensus 155 ~eni--~~~~------~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAr 207 (298)
||+ .|+. .+++ .......+.++++.++|.+...++++..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 4541 1222 12234568999999999744778899999999999999987
No 135
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.66 E-value=6.3e-20 Score=176.38 Aligned_cols=146 Identities=21% Similarity=0.191 Sum_probs=103.4
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC-C---HHHHhcc
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL-D---VLSLRRK 139 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~-~---~~~~~~~ 139 (298)
++++++++.|. ...+|+++ +. .+|++++|+||||||||||+++|+|+++|++|+|.+.|.++... + ...++++
T Consensus 144 ~~l~~Lg~~~~-~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 144 LDLHSLGMTAH-NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCGGGSCCCHH-HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCHHHcCCCHH-HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 44555555542 33467777 53 89999999999999999999999999999999999998876321 1 1123445
Q ss_pred eEEEe---------CCCCCC--c-----ccHHHHhHhCcccc----C-CCccHHHHHHHHHHcCCCchhhcCCCCCCChh
Q 022337 140 VGMLF---------QIPALF--E-----GTVVDNIRYGPQLR----G-KKLTENEVYKLLSLADLDSSFLNKTGGEISVG 198 (298)
Q Consensus 140 ig~v~---------Q~~~l~--~-----~tv~eni~~~~~~~----~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 198 (298)
+++.| |+|.++ . .|+.+++.++...+ . ...+...+.+.+..++++. .. .+.+||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~-~~--~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEP-FL--ISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCH-HH--HHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcH-HH--HHHHHHHH
Confidence 66666 998752 1 38999987642110 0 0111233445677889863 32 67799999
Q ss_pred HHHHHHHHHHHcCCCCeEE
Q 022337 199 QAQRVALARTLANEPEVLL 217 (298)
Q Consensus 199 qkQRv~iAral~~~p~ill 217 (298)
|+|| |||+|+.+|++..
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999876
No 136
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.64 E-value=2.9e-16 Score=148.35 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=68.8
Q ss_pred CCCCCCChhHHHHH------HHHHHHcCC-CCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhc
Q 022337 190 KTGGEISVGQAQRV------ALARTLANE-PEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIA 262 (298)
Q Consensus 190 ~~~~~LSgGqkQRv------~iAral~~~-p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~ 262 (298)
.++..|||||+||+ ++||+++.+ |++|||||||++||+..+..+.+.|.++.+ +.+||+|||+++ +..+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHRE-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCGG-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChHH-HHhhC
Confidence 45678999999988 567999999 999999999999999999999999998743 468999999987 56899
Q ss_pred CEEEEEe
Q 022337 263 DVVCLLV 269 (298)
Q Consensus 263 d~v~vl~ 269 (298)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 137
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.64 E-value=3.7e-20 Score=172.62 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=121.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHhcCC----CCCccEEEECCEeCCCCC
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKG-------VIMGIIGPSGSGKSTLLRALNRLW----EPPSGTVFLDGRDITDLD 132 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~G-------e~~~iiG~nGsGKSTLlk~l~gl~----~p~~G~I~i~g~~i~~~~ 132 (298)
++.++++..| ++..+++++++.+++| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++...
T Consensus 19 lr~~~l~~~~-g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~- 96 (334)
T 1in4_A 19 LRPKSLDEFI-GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI- 96 (334)
T ss_dssp TSCSSGGGCC-SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH-
T ss_pred cCCccHHHcc-CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH-
Confidence 4555677666 4567999999999877 899999999999999999999998 67788777666554211
Q ss_pred HHHH-hcceEEEeCCCCCCcccHHHHhHhCccccCC------CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHH
Q 022337 133 VLSL-RRKVGMLFQIPALFEGTVVDNIRYGPQLRGK------KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVAL 205 (298)
Q Consensus 133 ~~~~-~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~i 205 (298)
...+ +..|.+++|...+.+ ++.|++.......+. ....+.+...+..+++. . ...++..||+|++||+.+
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li-~-at~~~~~Ls~~l~sR~~l 173 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV-G-ATTRSGLLSSPLRSRFGI 173 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEE-E-EESCGGGSCHHHHTTCSE
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE-E-ecCCcccCCHHHHHhcCc
Confidence 0112 356999999877765 788877533221111 11122344445555653 2 567788999999999865
Q ss_pred HHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCE
Q 022337 206 ARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADV 264 (298)
Q Consensus 206 Aral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~ 264 (298)
+ .+||+.+.+++.++|++.++..+ ++|+.+.+..+|++
T Consensus 174 ~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 174 I----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp E----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred e----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 5 78999999999999998876544 47888888777765
No 138
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.63 E-value=1.4e-17 Score=153.22 Aligned_cols=111 Identities=23% Similarity=0.159 Sum_probs=76.8
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE---CCEeCCCCCHHHHhcceEEEeCCCC-------------
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL---DGRDITDLDVLSLRRKVGMLFQIPA------------- 148 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i---~g~~i~~~~~~~~~~~ig~v~Q~~~------------- 148 (298)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++.........+.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9998865432111246899999985
Q ss_pred ---CCcc-cHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCCh
Q 022337 149 ---LFEG-TVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISV 197 (298)
Q Consensus 149 ---l~~~-tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 197 (298)
+|+. |+ +|+.|+...+ ......++.++++.++|+.+..++++.+||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~-~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH-VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS-SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC-CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3553 77 8888763221 2233457899999999964677888988885
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.62 E-value=7.3e-19 Score=172.96 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=113.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVD 156 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~e 156 (298)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.|.+-...+ -...++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence 4788999999999999999999999999999999999999999999886522221 1234666666543111 25555
Q ss_pred HhHhCcccc------CCCccHH---------------------HHHHHHHHc-----CCCchhh---c---CCCCCCChh
Q 022337 157 NIRYGPQLR------GKKLTEN---------------------EVYKLLSLA-----DLDSSFL---N---KTGGEISVG 198 (298)
Q Consensus 157 ni~~~~~~~------~~~~~~~---------------------~~~~~l~~~-----~l~~~~~---~---~~~~~LSgG 198 (298)
++...++.. +.-...+ .+.++++++ ++...+. + .....+|+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 554332211 0000000 111222222 2211111 1 123457999
Q ss_pred HHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEE--EccCHHHHHhhcCE
Q 022337 199 QAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVM--VSHSIKQIQRIADV 264 (298)
Q Consensus 199 qkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~--itHd~~~~~~~~d~ 264 (298)
|+||.++|. + | |+||||...+.+++.+.++.++ +.|+++ +||+++.+...|+.
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~-~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPK-EDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETT-TTEEEECSCCTHHHHHHHHHTS
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEccc-CCEEEEcccHHHHHHHHHHcCC
Confidence 999987651 1 7 9999999888888888877544 889885 99999999888853
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.61 E-value=7.1e-17 Score=136.62 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=76.5
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcc
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~ 163 (298)
||++++|+.++|+||||||||||++++++.+.|++|... .| .+..+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~---------~~~~~~~~~--- 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YF---------FDTKDLIFR--- 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CE---------EEHHHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EE---------EEHHHHHHH---
Confidence 567788999999999999999999999998876665210 01 122222110
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC-CCCHHHHHHHHHHHHHHHh
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts-~LD~~~~~~~~~~l~~l~~ 242 (298)
+......-.. . -+...+.+|++|+||||++ ++|+..+..+.+++.+..+
T Consensus 82 ----------~~~~~~~~~~------------~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~ 131 (180)
T 3ec2_A 82 ----------LKHLMDEGKD------------T--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN 131 (180)
T ss_dssp ----------HHHHHHHTCC------------S--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHhcCchH------------H--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 1111110000 0 0112234899999999995 9999999999999988764
Q ss_pred cCCcEEEEEccCHH
Q 022337 243 KHGMTIVMVSHSIK 256 (298)
Q Consensus 243 ~~g~tii~itHd~~ 256 (298)
+ |+++|++||...
T Consensus 132 ~-~~~ii~tsn~~~ 144 (180)
T 3ec2_A 132 N-LKSTIITTNYSL 144 (180)
T ss_dssp T-TCEEEEECCCCS
T ss_pred c-CCCEEEEcCCCh
Confidence 4 899999999864
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=4e-16 Score=145.00 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=78.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhc-CCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNR-LWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKL 169 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~g-l~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 169 (298)
..+.|.||||+|||||+++|++ ++.|+.|.+.++|.++.... ..+..+++++|.+.+.- .....+..
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~- 104 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEI---------TPSDMGNN- 104 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEE---------CCC----C-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEe---------cHhhcCCc-
Confidence 3489999999999999999999 89999999999998764321 22567899998764311 00000111
Q ss_pred cHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEE
Q 022337 170 TENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIV 249 (298)
Q Consensus 170 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii 249 (298)
....+.+.++.+.-... .+... +||| +..+|+++|+|||++ ||+.+...+.+.+.+..+ +.++|
T Consensus 105 ~~~~~~~~i~~~~~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~--~~~~I 168 (354)
T 1sxj_E 105 DRIVIQELLKEVAQMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK--NIRLI 168 (354)
T ss_dssp CHHHHHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT--TEEEE
T ss_pred chHHHHHHHHHHHHhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC--CCEEE
Confidence 11123333333221100 11111 5676 788999999999999 999999999999998743 78999
Q ss_pred EEccCHHH
Q 022337 250 MVSHSIKQ 257 (298)
Q Consensus 250 ~itHd~~~ 257 (298)
++||+++.
T Consensus 169 l~t~~~~~ 176 (354)
T 1sxj_E 169 MVCDSMSP 176 (354)
T ss_dssp EEESCSCS
T ss_pred EEeCCHHH
Confidence 99999753
No 142
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.61 E-value=2.7e-17 Score=150.89 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=91.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCc-----
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGP----- 162 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~----- 162 (298)
+++.+++|+||+|||||||.+.|.+++.+. | . . ++.+.+|+|+..+++.+.++|+.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 468899999999999999999999999763 2 0 1 34466669999888889999998752
Q ss_pred -cccCC--CccHHHHHHHHHHcCCC-------chhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH
Q 022337 163 -QLRGK--KLTENEVYKLLSLADLD-------SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPI 228 (298)
Q Consensus 163 -~~~~~--~~~~~~~~~~l~~~~l~-------~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~ 228 (298)
..++. ..+.+.+.+.++.+.-. ......+...+||||+||+++|++...+|+|+|+||||+++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 11111 22345566666665321 01123456789999999999984333399999999999999985
No 143
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.60 E-value=5.6e-19 Score=160.64 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=107.0
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCC-CCCcc-cH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP-ALFEG-TV 154 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~-~l~~~-tv 154 (298)
..+++++++++++| ++|+||||||||||+|+|+|.+.+ |.|.++|.++......+.++.++++||.. ..++. ++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45899999999999 999999999999999999999887 79999998876544445566789999985 44553 77
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC-----------
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS----------- 223 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts----------- 223 (298)
.|++......++ .... . ... ...++.+.+|||||+||+.+++|+.++|++| |||+.
T Consensus 109 ~Deid~~~~~r~----~~~~----~--~~~-~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~ 175 (274)
T 2x8a_A 109 FDEVDALCPRRS----DRET----G--ASV-RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFV 175 (274)
T ss_dssp EETCTTTCC-------------------CT-THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEEC
T ss_pred eehhhhhhcccC----CCcc----h--HHH-HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEe
Confidence 788865432111 0000 0 122 3456677789999999999999999999985 99964
Q ss_pred -CCCHHHHHHHHHHH
Q 022337 224 -ALDPISTQNIEDVL 237 (298)
Q Consensus 224 -~LD~~~~~~~~~~l 237 (298)
--|...+.++++.+
T Consensus 176 ~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 176 GLPPPADRLAILKTI 190 (274)
T ss_dssp CSCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 23666777666654
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.59 E-value=1e-15 Score=126.85 Aligned_cols=92 Identities=22% Similarity=0.321 Sum_probs=71.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--EEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--TVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
+|+++ +|+.++|+||||||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999876 46 455444322110
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHH
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~ 236 (298)
+++.+|++|++|||++ +|+..++.++++
T Consensus 79 ---------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~l 106 (149)
T 2kjq_A 79 ---------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSI 106 (149)
T ss_dssp ---------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHH
T ss_pred ---------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHH
Confidence 2356899999999998 666668999999
Q ss_pred HHHHHhcCCcE-EEEEccC
Q 022337 237 LVKLKKKHGMT-IVMVSHS 254 (298)
Q Consensus 237 l~~l~~~~g~t-ii~itHd 254 (298)
+.++.++ |++ +|++||.
T Consensus 107 i~~~~~~-g~~~iiits~~ 124 (149)
T 2kjq_A 107 FNRFRNS-GKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHH-TCCEEEEEESS
T ss_pred HHHHHHc-CCcEEEEECCC
Confidence 9988664 787 8888884
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.59 E-value=5.4e-17 Score=155.81 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=96.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR 159 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~ 159 (298)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+... +...+|+++++.. ...++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999843 344444332 2235677776541 1112222221
Q ss_pred hCc---cccCCCccH-H---HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHH
Q 022337 160 YGP---QLRGKKLTE-N---EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQN 232 (298)
Q Consensus 160 ~~~---~~~~~~~~~-~---~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~ 232 (298)
+.. ...+..... . ++..++..+++. ++++.+||+||+|++++|++|+.+|.++++ +.+|+... .
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~ 285 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-E 285 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-H
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-H
Confidence 110 000111000 0 011112222321 345678999999999999999999999999 99999877 5
Q ss_pred HHHHHHHHHhcCCcEEEEEc
Q 022337 233 IEDVLVKLKKKHGMTIVMVS 252 (298)
Q Consensus 233 ~~~~l~~l~~~~g~tii~it 252 (298)
.++.+.+..++.+.+++++|
T Consensus 286 ~~~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 286 AVKALADALAREGLAVLPVS 305 (416)
T ss_dssp HHHHHHHHHHTTTSCEEECC
T ss_pred HHHHHHHHHHhcCCeEEEEE
Confidence 55555555444577777766
No 146
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.57 E-value=1.1e-17 Score=145.33 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=87.5
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRG 166 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~ 166 (298)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+++++...++.+..+|+..... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~-~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPR-KG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGG-TT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhccccc-CC
Confidence 5789999999999999999999999999875 3 13566666554444444444321100 01
Q ss_pred C--CccHHHHHHHHHHcC----CCchhhcCCCCCCChhHHHHHHHH-HHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHH
Q 022337 167 K--KLTENEVYKLLSLAD----LDSSFLNKTGGEISVGQAQRVALA-RTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 239 (298)
Q Consensus 167 ~--~~~~~~~~~~l~~~~----l~~~~~~~~~~~LSgGqkQRv~iA-ral~~~p~illLDEPts~LD~~~~~~~~~~l~~ 239 (298)
. ..+...+.+.+..+. +.-. .......+|+||+||+++| ++++.++.++++|||.- ..+.+
T Consensus 79 ~~~~~~~~~~~~~l~~l~~~~~i~~p-~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~ 146 (208)
T 3c8u_A 79 APETFDFEGFQRLCHALKHQERVIYP-LFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTA 146 (208)
T ss_dssp SGGGBCHHHHHHHHHHHHHCSCEEEE-EEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGG
T ss_pred CCchhhHHHHHHHHHHHhcCCceecc-cCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHH
Confidence 1 112223333333221 1101 1233446899999999998 88899998888999841 11122
Q ss_pred HHhcCCcEEEEEccCHHH-HHhhcCE
Q 022337 240 LKKKHGMTIVMVSHSIKQ-IQRIADV 264 (298)
Q Consensus 240 l~~~~g~tii~itHd~~~-~~~~~d~ 264 (298)
. --.+++++++.+. +.+.+.|
T Consensus 147 ~----~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 147 I----WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp T----CSEEEEECCCHHHHHHHHHHH
T ss_pred h----cCEEEEEeCCHHHHHHHHHHH
Confidence 2 2367888888776 5566666
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.53 E-value=1.7e-17 Score=153.12 Aligned_cols=139 Identities=18% Similarity=0.207 Sum_probs=99.8
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHhcCCC--CCccE
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEI-------------------PKGVIMGIIGPSGSGKSTLLRALNRLWE--PPSGT 120 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i-------------------~~Ge~~~iiG~nGsGKSTLlk~l~gl~~--p~~G~ 120 (298)
.+|+++||++.|. ++++++|+.+ ++|+++||+||||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 4689999999992 6999999988 9999999999999999999999999998 99999
Q ss_pred EEE---CCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCC
Q 022337 121 VFL---DGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEIS 196 (298)
Q Consensus 121 I~i---~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 196 (298)
|.+ ||... +. ..++.+|++ |+..+++ .++.+|+.+...+..... .+ ..+....+
T Consensus 113 i~vi~~d~~~~---~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~------------~i-----~~P~~~~~ 170 (308)
T 1sq5_A 113 VELITTDGFLH---PN-QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP------------NV-----TAPVYSHL 170 (308)
T ss_dssp EEEEEGGGGBC---CH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS------------CE-----EECCEETT
T ss_pred EEEEecCCccC---cH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC------------ce-----eccccccc
Confidence 999 88764 22 335568888 8777665 489998876532221100 01 11111222
Q ss_pred hhHHHHHHHHHHHcCCCCeEEEeCcCCCCCH
Q 022337 197 VGQAQRVALARTLANEPEVLLLDEPTSALDP 227 (298)
Q Consensus 197 gGqkQRv~iAral~~~p~illLDEPts~LD~ 227 (298)
.+ +|+..+.+.+.+|+++|+|.|....++
T Consensus 171 ~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 171 IY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp TT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cc--CcccccceecCCCCEEEECchhhCCCc
Confidence 22 333333345678999999999998873
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.50 E-value=7.4e-15 Score=125.94 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=81.3
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHhCc
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRYGP 162 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~~~ 162 (298)
|+++++|++++|+||||||||||+++|+|++ | .+.+++.++...+....+..++|+||++.+|+. ++.+++.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 6778899999999999999999999999997 3 588888777654433345679999999887764 7777766543
Q ss_pred cccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc
Q 022337 163 QLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP 221 (298)
Q Consensus 163 ~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP 221 (298)
...+. ....+.+.+.++.-.. -+.+ +..|-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~--vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRD--VLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCE--EEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcCCe--EEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 32221 1234456666554221 1222 234444555666777888888777
No 149
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=2.2e-17 Score=157.28 Aligned_cols=168 Identities=17% Similarity=0.188 Sum_probs=114.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhc------------CCCCCccEEEECCEeCCCCCH-HHHhcce---EEEeCCCCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNR------------LWEPPSGTVFLDGRDITDLDV-LSLRRKV---GMLFQIPAL 149 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~g------------l~~p~~G~I~i~g~~i~~~~~-~~~~~~i---g~v~Q~~~l 149 (298)
.+++|+.++|+|+||||||||+++|+| ...|+.|.|.+.|..+..... ..-++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 678999999998854321100 0011223 366777766
Q ss_pred Ccc-cHHHHh--HhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCC--CeEEEeCcCCC
Q 022337 150 FEG-TVVDNI--RYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEP--EVLLLDEPTSA 224 (298)
Q Consensus 150 ~~~-tv~eni--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p--~illLDEPts~ 224 (298)
++. +..+++ .|...++.. ..++..++.. .+..+..+||+. +| +++++|||+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~-------d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV-------DAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC-------SEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH-------HHHHHHHhcc---ccceeeeecccc------------CcchhhhhchhhhHH
Confidence 543 433322 111000000 0011111111 123444566653 99 99999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhcCCcEEEEEccCHHHHHhhcCEEE-EEeCC-EEEEeeC
Q 022337 225 LDPISTQNIEDVLVKL-KKKHGMTIVMVSHSIKQIQRIADVVC-LLVNG-EIVEVLK 278 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l-~~~~g~tii~itHd~~~~~~~~d~v~-vl~~G-~i~~~g~ 278 (298)
+|+...+..++.+.+. .+ .|.|++ +|.+..+..+||++. +|++| +++..++
T Consensus 154 ~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 9999999999999987 54 477753 999999999999999 99999 8876554
No 150
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.47 E-value=3.4e-15 Score=137.91 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=68.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE---CCEeCCCCCHHHHhcceEEEeCCCCCCc-----ccHHH
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL---DGRDITDLDVLSLRRKVGMLFQIPALFE-----GTVVD 156 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i---~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-----~tv~e 156 (298)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ +|+.+.... ..++..+||++|.|.+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 667899999999999999999999999999999999999 888775432 112223899999997643 478 8
Q ss_pred HhH--hC-c-------cccC---CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHH
Q 022337 157 NIR--YG-P-------QLRG---KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQR 202 (298)
Q Consensus 157 ni~--~~-~-------~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQR 202 (298)
|+. |+ . .+.+ .......+.++++.+++.+ ...+....|+.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~-~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ-YRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH-HHHHHHHHHHHHHhhc
Confidence 884 32 0 1111 1122356889999999974 3444455677788773
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.46 E-value=2.1e-17 Score=145.53 Aligned_cols=187 Identities=13% Similarity=0.059 Sum_probs=81.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh-cCCCCCccEEEECCEeCCCCCHH-HHhcceEEEeCCCCCCcc-cH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN-RLWEPPSGTVFLDGRDITDLDVL-SLRRKVGMLFQIPALFEG-TV 154 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~-gl~~p~~G~I~i~g~~i~~~~~~-~~~~~ig~v~Q~~~l~~~-tv 154 (298)
+..+++||++++|++++|+||||||||||+++|+ |++++ + .++.++...++. .....++|.|+++..|.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4678999999999999999999999999999999 99854 1 233322211110 011234577776654442 44
Q ss_pred HHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH-HHH-HHHcCCCCeEEEeCcCCCCCHHHH
Q 022337 155 VDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV-ALA-RTLANEPEVLLLDEPTSALDPIST 230 (298)
Q Consensus 155 ~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv-~iA-ral~~~p~illLDEPts~LD~~~~ 230 (298)
.+++.......+. ....+.+.+.++.-.. -+.+-.+. -...-+++. .-+ ..++..|+..++||++.+.|..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~ 166 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVS--TLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDS 166 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHTCE--EEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC---------
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcCCe--EEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCH
Confidence 4444321111110 0112234444444221 11111000 011113333 112 234567788888999999998887
Q ss_pred HHHHHHHHHHHh----cCCcEEEEEccCHHHHHhhcCEEEEEeCCE
Q 022337 231 QNIEDVLVKLKK----KHGMTIVMVSHSIKQIQRIADVVCLLVNGE 272 (298)
Q Consensus 231 ~~~~~~l~~l~~----~~g~tii~itHd~~~~~~~~d~v~vl~~G~ 272 (298)
+.+.+.|.+... .....+++++|+++.+.+-+++++-..+++
T Consensus 167 ~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~ 212 (231)
T 3lnc_A 167 EVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMK 212 (231)
T ss_dssp -----CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhc
Confidence 777766654322 124567888889888777666665444444
No 152
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.43 E-value=1.2e-14 Score=127.80 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=97.9
Q ss_pred CCcceeee-eEEEeCCcEEEEEcCCCccHHHHHH-HHhcCCCCCccEEEECCEeCCCCCHHHH---hcceEEEeCCCCCC
Q 022337 76 GAPILKGV-NMEIPKGVIMGIIGPSGSGKSTLLR-ALNRLWEPPSGTVFLDGRDITDLDVLSL---RRKVGMLFQIPALF 150 (298)
Q Consensus 76 ~~~vL~~i-sl~i~~Ge~~~iiG~nGsGKSTLlk-~l~gl~~p~~G~I~i~g~~i~~~~~~~~---~~~ig~v~Q~~~l~ 150 (298)
+.+.|+.+ .--+++|++++|.||||||||||+. ++.+..++..+.+++++.. +..++ .+.+|+.+|+...
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~- 82 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE- 82 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH-
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh-
Confidence 34566666 6679999999999999999999954 5555555545556665432 22222 2234554442100
Q ss_pred cccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCC--C
Q 022337 151 EGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSAL--D 226 (298)
Q Consensus 151 ~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~L--D 226 (298)
.+++.+.-... .... .+...+. +...-+....+....++.++ .+|+++++|+|++.+ |
T Consensus 83 ----~~~l~~~~~~~-~~~~------~~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~ 144 (247)
T 2dr3_A 83 ----KGMFAMVDAFT-AGIG------KSKEYEK-------YIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINK 144 (247)
T ss_dssp ----HTSEEEEECST-TTTC------C--CCCS-------CBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTC
T ss_pred ----CCcEEEEecch-hhcc------ccccccc-------ccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCC
Confidence 00111000000 0000 0000011 00011112223333333333 579999999999988 6
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEccCHHH--------HHhhcCEEEEEeC
Q 022337 227 PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQ--------IQRIADVVCLLVN 270 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~~~~g~tii~itHd~~~--------~~~~~d~v~vl~~ 270 (298)
+...++++..|.++.++.|.|||+++|.... +..+||.|+.|+.
T Consensus 145 ~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 145 PAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 6556677777777766779999999998775 5678999999974
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.42 E-value=6.8e-14 Score=129.14 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=84.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhC
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~ 161 (298)
.++++.++|++++|+|||||||||+++.|++++.++.|+|.+.+.|..+ . ...+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r--~-------------------~a~e----- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR--A-------------------AAIE----- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC--H-------------------HHHH-----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc--H-------------------HHHH-----
Confidence 4567778999999999999999999999999999999999988776422 0 0111
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHH---HHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRV---ALARTLANEPEVLLLDEPTSALDPISTQNIEDVLV 238 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv---~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~ 238 (298)
.+..+++..+++ . ...+|+|+.|++ ++++|+..+|+++|+|||.. ......+++.+.
T Consensus 150 -----------qL~~~~~~~gl~-~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~ 209 (306)
T 1vma_A 150 -----------QLKIWGERVGAT-V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELR 209 (306)
T ss_dssp -----------HHHHHHHHHTCE-E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHH
T ss_pred -----------HHHHHHHHcCCc-E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHH
Confidence 223345566774 2 235789999999 99999999999999999974 334455555555
Q ss_pred HH
Q 022337 239 KL 240 (298)
Q Consensus 239 ~l 240 (298)
++
T Consensus 210 ~l 211 (306)
T 1vma_A 210 KV 211 (306)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 154
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.41 E-value=1.3e-13 Score=126.48 Aligned_cols=142 Identities=12% Similarity=0.104 Sum_probs=100.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
+.++++++.|++ .. ++++|+ +|++++++|+||+||||+++.|++++.+..|+|.+.+.|+... ...
T Consensus 77 ~~~~~l~~~~~~-~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~--~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP--AAR------- 142 (295)
T ss_dssp HHHHHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH--HHH-------
T ss_pred HHHHHHHHHHCC-CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH--hHH-------
Confidence 456678788843 22 788998 9999999999999999999999999999999999988776431 100
Q ss_pred eCCCCCCcccHHHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCc-C
Q 022337 144 FQIPALFEGTVVDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEP-T 222 (298)
Q Consensus 144 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEP-t 222 (298)
+.+ ....+..+++ .+. . ....+..+.+|.+++++...+++++|+||| +
T Consensus 143 ------------~ql----------------~~~~~~~~l~-~~~-~-~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 143 ------------EQL----------------RLLGEKVGVP-VLE-V-MDGESPESIRRRVEEKARLEARDLILVDTAGR 191 (295)
T ss_dssp ------------HHH----------------HHHHHHHTCC-EEE-C-CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred ------------HHH----------------HHhcccCCeE-EEE-c-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 000 0112334553 111 0 011234456799999998899999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCcEEEEEc
Q 022337 223 SALDPISTQNIEDVLVKLKKKHGMTIVMVS 252 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l~~~~g~tii~it 252 (298)
.++|.....++.+....+.. ..+++++.
T Consensus 192 ~~~d~~~~~~l~~~~~~~~~--~~~~lv~~ 219 (295)
T 1ls1_A 192 LQIDEPLMGELARLKEVLGP--DEVLLVLD 219 (295)
T ss_dssp SSCCHHHHHHHHHHHHHHCC--SEEEEEEE
T ss_pred ccccHHHHHHHHHHhhhcCC--CEEEEEEe
Confidence 99999988888887776532 44554443
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.40 E-value=2.8e-13 Score=124.39 Aligned_cols=141 Identities=13% Similarity=0.161 Sum_probs=93.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGK 167 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~ 167 (298)
.+|++++++|||||||||+++.|++.+.+++| +++.++.+++ +..++.+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~--~r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDT--YRIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCC--SSTTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCc--ccchHHHHHHH-------
Confidence 57999999999999999999999999988778 2456666655 22344444432
Q ss_pred CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH--hcCC
Q 022337 168 KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--KKHG 245 (298)
Q Consensus 168 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~--~~~g 245 (298)
..+..+++. ... .+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+. ...+
T Consensus 156 ---------~~~~~gl~~-~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~ 215 (296)
T 2px0_A 156 ---------YAELLQAPL-EVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQ 215 (296)
T ss_dssp ---------HHTTTTCCC-CBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEE
T ss_pred ---------HHHhcCCCe-Eec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCe
Confidence 222334431 111 12 2334666665 4999999999 99999877655555443322 1213
Q ss_pred cEEEE-EccCHHHHHhhcCEEEEEeCCEEEE
Q 022337 246 MTIVM-VSHSIKQIQRIADVVCLLVNGEIVE 275 (298)
Q Consensus 246 ~tii~-itHd~~~~~~~~d~v~vl~~G~i~~ 275 (298)
.++++ .||+.+.+.++|+++..+..+.++.
T Consensus 216 ~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 216 SFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp EEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 34444 4999998989899877677777765
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.38 E-value=1.6e-13 Score=133.69 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=53.9
Q ss_pred EEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC
Q 022337 65 RVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130 (298)
Q Consensus 65 ~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~ 130 (298)
++.+++... ..+|+++||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 344555432 3589999999999 9999999999999999999999999999999999988754
No 157
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.38 E-value=9.4e-14 Score=134.54 Aligned_cols=181 Identities=13% Similarity=0.148 Sum_probs=118.8
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhcce-EEEeCCCCCCcccH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGRDITDLDVLSLRRKV-GMLFQIPALFEGTV 154 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i-g~v~Q~~~l~~~tv 154 (298)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...+.+++ +.... ++
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~----~~--- 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGN----IN--- 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHT----CC---
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcC----CC---
Confidence 4578888888999999999999999999999999987766545 56555433 2333332221 11111 00
Q ss_pred HHHhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCH-----
Q 022337 155 VDNIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDP----- 227 (298)
Q Consensus 155 ~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~----- 227 (298)
.+.+..+. + ...+.+++.++++.++... +.-.....+|.+|.+ +.+|.+. .+|+++++|+++.-.++
T Consensus 260 ~~~l~~g~-l--~~~~~~~~~~a~~~l~~~~-l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~ 333 (454)
T 2r6a_A 260 AQNLRTGK-L--TPEDWGKLTMAMGSLSNAG-IYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKE 333 (454)
T ss_dssp HHHHHTSC-C--CHHHHHHHHHHHHHHHSSC-EEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC---
T ss_pred HHHHhcCC-C--CHHHHHHHHHHHHHHhcCC-EEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCC
Confidence 01121110 0 0112234555555554322 222335679999876 5667766 68999999999987742
Q ss_pred ---HHHHHHHHHHHHHHhcCCcEEEEEcc---------C--HH--------HHHhhcCEEEEEeCCEE
Q 022337 228 ---ISTQNIEDVLVKLKKKHGMTIVMVSH---------S--IK--------QIQRIADVVCLLVNGEI 273 (298)
Q Consensus 228 ---~~~~~~~~~l~~l~~~~g~tii~itH---------d--~~--------~~~~~~d~v~vl~~G~i 273 (298)
....++.+.|+.++++.|++||+++| + +. .+...||.|++|+.++.
T Consensus 334 ~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 334 NRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 34467778888888778999999999 3 32 57788999999987654
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.32 E-value=7e-14 Score=137.15 Aligned_cols=174 Identities=18% Similarity=0.240 Sum_probs=109.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCccEEEECCEeCCCCCHHHHhc--ce-EEEeCCCCCCcccHHH
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNR--LWEPPSGTVFLDGRDITDLDVLSLRR--KV-GMLFQIPALFEGTVVD 156 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g--l~~p~~G~I~i~g~~i~~~~~~~~~~--~i-g~v~Q~~~l~~~tv~e 156 (298)
-+++++.++..+.|.|++||||||++++|.. +++++.|++.+.+.|.+......+.. ++ +.|.+++ ..+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~----~~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDM----KDAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSH----HHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCH----HHHHH
Confidence 4778889999999999999999999999886 67777888888877765432211110 00 1111110 01122
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhc---CCCCCCChhHHHHH----------HHHHHHcCCCC-eEEEeCcC
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLN---KTGGEISVGQAQRV----------ALARTLANEPE-VLLLDEPT 222 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~LSgGqkQRv----------~iAral~~~p~-illLDEPt 222 (298)
.+.... .+-+++ .+++...|+. ++.+ +....+|+||+|+. ++|+++...|. ++++||++
T Consensus 235 ~L~~~~-----~EmerR-~~ll~~~Gv~-~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~ 307 (512)
T 2ius_A 235 ALRWCV-----NEMERR-YKLMSALGVR-NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA 307 (512)
T ss_dssp HHHHHH-----HHHHHH-HHHHHHTTCS-SHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred HHHHHH-----HHHHHH-HHHHHHcCCc-cHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence 221110 111222 3677788875 3322 22346899998763 46677788898 89999999
Q ss_pred CCCCHHHHHHHHHHHHHH---HhcCCcEEEEEccCHH-------HHHhhcCEEEE
Q 022337 223 SALDPISTQNIEDVLVKL---KKKHGMTIVMVSHSIK-------QIQRIADVVCL 267 (298)
Q Consensus 223 s~LD~~~~~~~~~~l~~l---~~~~g~tii~itHd~~-------~~~~~~d~v~v 267 (298)
+-+|.. ...+.+.|.++ .+..|.++|++||+++ ...++.+||.+
T Consensus 308 ~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 308 DLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred HHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 988743 34455555444 3445889999999987 44566677655
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.31 E-value=1e-15 Score=138.49 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=96.8
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
-+++++.+.|. +..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++........++.++++
T Consensus 50 ~~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 50 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 45566777673 457899999999999 89999999999999999999885 89999998765432222334567888
Q ss_pred eCCCC-CCcc-cHHHHhH-hCccccC-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPA-LFEG-TVVDNIR-YGPQLRG-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~-l~~~-tv~eni~-~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||... ..+. ++.|++. ++..... .....++..+.+. +...+|||||+||+.+++|+.++|++ +|
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~----------~ll~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH----------HHHHHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH----------HHHHHHhCCCCCCCEEEEEecCCchh--CC
Confidence 88763 4443 7777773 3322110 0000111112211 12235899999999999999999987 67
Q ss_pred CcC
Q 022337 220 EPT 222 (298)
Q Consensus 220 EPt 222 (298)
++.
T Consensus 193 ~~l 195 (278)
T 1iy2_A 193 PAL 195 (278)
T ss_dssp HHH
T ss_pred HhH
Confidence 764
No 160
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.30 E-value=3.5e-12 Score=119.71 Aligned_cols=145 Identities=20% Similarity=0.319 Sum_probs=85.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQL 164 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~ 164 (298)
-+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. .+.+++|+.+++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~------------------ 115 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS------------------ 115 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG------------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH------------------
Confidence 478999999999999999999888876543333333 332221 0110 011111111110
Q ss_pred cCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCC--CCeEEEeCcCCCC----------CH---HH
Q 022337 165 RGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANE--PEVLLLDEPTSAL----------DP---IS 229 (298)
Q Consensus 165 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~--p~illLDEPts~L----------D~---~~ 229 (298)
+ ... .+ .+. .|-+.++++++.+ |+++++|||++.+ |+ ..
T Consensus 116 ------------------l---~i~-~~--~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q 169 (349)
T 2zr9_A 116 ------------------L---LVS-QP--DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQ 169 (349)
T ss_dssp ------------------C---EEE-CC--SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHH
T ss_pred ------------------e---EEe-cC--CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHH
Confidence 0 000 01 122 2345678888755 9999999999998 33 22
Q ss_pred HHHHHHHHHHH---HhcCCcEEEEEccCHH----------------HHHhhcCEEEEEeCCEEEEee
Q 022337 230 TQNIEDVLVKL---KKKHGMTIVMVSHSIK----------------QIQRIADVVCLLVNGEIVEVL 277 (298)
Q Consensus 230 ~~~~~~~l~~l---~~~~g~tii~itHd~~----------------~~~~~~d~v~vl~~G~i~~~g 277 (298)
.+.+.+.++++ .++.|+|||+++|... .+..+||.++.++.++++..|
T Consensus 170 ~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 170 ARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 22444444444 3556999999999643 256789999999887665443
No 161
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.29 E-value=5.8e-14 Score=124.34 Aligned_cols=75 Identities=13% Similarity=0.132 Sum_probs=52.0
Q ss_pred eEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH--------H
Q 022337 63 KFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV--------L 134 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~--------~ 134 (298)
.|+++|+...|. . +|++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+. .
T Consensus 9 ~l~l~~~~~~~~-~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFA-R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEE-E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccC-C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 488888876552 1 566666 8999999999999999999999999999999999998743221 1
Q ss_pred HHhcceEEEeCC
Q 022337 135 SLRRKVGMLFQI 146 (298)
Q Consensus 135 ~~~~~ig~v~Q~ 146 (298)
..+..++|++|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 235679999985
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.28 E-value=1.1e-15 Score=136.04 Aligned_cols=143 Identities=20% Similarity=0.231 Sum_probs=97.0
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
.+++++.+.|. +..+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++........++.++++
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 45667777673 457899999999999 89999999999999999999885 88999988765332222334567888
Q ss_pred eCCCC-CCc-ccHHHHh-HhCccccC-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPA-LFE-GTVVDNI-RYGPQLRG-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~-l~~-~tv~eni-~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||... ..+ .++.|++ .++..... .....++..+.+. +...+|||||+||+.+++|+.++|++ +|
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~----------~ll~~l~g~~~~~~~i~~a~t~~p~~--ld 168 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN----------QLLVEMDGFEKDTAIVVMAATNRPDI--LD 168 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH----------HHHHHHHTCCTTCCEEEEEEESCGGG--SC
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH----------HHHHHHhCCCCCCCEEEEEccCCchh--CC
Confidence 88754 344 3667777 33322110 0000111111111 11235889999999999999999998 68
Q ss_pred CcCC
Q 022337 220 EPTS 223 (298)
Q Consensus 220 EPts 223 (298)
++.-
T Consensus 169 ~~l~ 172 (254)
T 1ixz_A 169 PALL 172 (254)
T ss_dssp GGGG
T ss_pred HHHc
Confidence 8764
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.24 E-value=2.5e-13 Score=115.77 Aligned_cols=133 Identities=23% Similarity=0.262 Sum_probs=74.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC-----------CccEEEECCEeCCC--CCHHHHhcceEEEeC---CCC--C--Cc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEP-----------PSGTVFLDGRDITD--LDVLSLRRKVGMLFQ---IPA--L--FE 151 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p-----------~~G~I~i~g~~i~~--~~~~~~~~~ig~v~Q---~~~--l--~~ 151 (298)
.++|+|+||||||||++.++|...| ++|+|.++|+++.- ++....++..++++| +.. + ++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 5899999999999999999998876 57999999976421 110001111222222 110 0 00
Q ss_pred c---cHHHHhHhCccccCCCccHHHHHHHHHHc--CCC-chhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCC
Q 022337 152 G---TVVDNIRYGPQLRGKKLTENEVYKLLSLA--DLD-SSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSAL 225 (298)
Q Consensus 152 ~---tv~eni~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~L 225 (298)
. ...+++.. ...++.+.. +.. ....++ . +|..-..+.+.+|++++.+|+++++| ||++
T Consensus 111 ~~~~~s~~~~~~------------~~~~~~~~~~~~~~i~~v~nK-~-Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sal 174 (191)
T 1oix_A 111 IAKHLTYENVER------------WLKELRDHADSNIVIMLVGNK-S-DLRHLRAVPTDEARAFAEKNGLSFIE--TSAL 174 (191)
T ss_dssp TTCHHHHHTHHH------------HHHHHHHHSCTTCEEEEEEEC-G-GGGGGCCSCHHHHHHHHHHTTCEEEE--CCTT
T ss_pred CcCHHHHHHHHH------------HHHHHHHhcCCCCcEEEEEEC-c-ccccccccCHHHHHHHHHHcCCEEEE--EeCC
Confidence 0 00111110 001111111 000 000111 0 12211223477899999999999999 9999
Q ss_pred CHHHHHHHHHHHHHH
Q 022337 226 DPISTQNIEDVLVKL 240 (298)
Q Consensus 226 D~~~~~~~~~~l~~l 240 (298)
|+.+..++++.|.+.
T Consensus 175 d~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 175 DSTNVEAAFQTILTE 189 (191)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999988753
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.23 E-value=2.5e-13 Score=136.03 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=108.5
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCc-cEEEECCEeCCCCCHHHHhcceEEEeC
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-GTVFLDGRDITDLDVLSLRRKVGMLFQ 145 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~-G~I~i~g~~i~~~~~~~~~~~ig~v~Q 145 (298)
++++..| +...+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+++.+.... ...++++|+
T Consensus 38 ~~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~ 111 (604)
T 3k1j_A 38 KLIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPA 111 (604)
T ss_dssp SHHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEET
T ss_pred cccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEec
Confidence 3444445 45679999999999999999999999999999999999999988 8888888765432 345788876
Q ss_pred CC----------------------CCCc-ccHHHHhHhCcccc-CCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHH
Q 022337 146 IP----------------------ALFE-GTVVDNIRYGPQLR-GKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQ 201 (298)
Q Consensus 146 ~~----------------------~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQ 201 (298)
.. ..+. .++.+|+....... +.+...+......+.+|.-+ ........+|+|++|
T Consensus 112 g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~-~~~~~~g~~~~g~~~ 190 (604)
T 3k1j_A 112 CQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVR-HDPFQSGGLGTPAHE 190 (604)
T ss_dssp THHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEEC-CCCC----CCCCGGG
T ss_pred chHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEE-echhhcCCccccccc
Confidence 53 1111 13333333221100 00000000011222333211 112233569999999
Q ss_pred HHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHH
Q 022337 202 RVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVK 239 (298)
Q Consensus 202 Rv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~ 239 (298)
++..++....++.+|++||... |++.....+++.|.+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999999988 899999999888875
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.15 E-value=2.1e-11 Score=114.69 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=93.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCcc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQ 163 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~ 163 (298)
=+++|+++.|.||+|||||||+..+++...+..|.| ++++.... .. .+.+++|+.+|+..+.. .++.+.+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l~i~~~~~~e~~l~~--- 130 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSLLISQPDHGEQALEI--- 130 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGCEEECCSSHHHHHHH---
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhhhhhhccCHHHHHHH---
Confidence 388999999999999999999999999888777865 66665432 22 24456777776543322 244433321
Q ss_pred ccCCCccHHHHHHHHHHcCCC----chhhcCCC-CCCCh--hHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHH
Q 022337 164 LRGKKLTENEVYKLLSLADLD----SSFLNKTG-GEISV--GQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDV 236 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~-~~LSg--GqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~ 236 (298)
+..+++....+ +.+....+ .+++| |++|++..||++. +++..
T Consensus 131 ----------~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la---------------------~~L~~ 179 (356)
T 3hr8_A 131 ----------VDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMS---------------------QALRK 179 (356)
T ss_dssp ----------HHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHH---------------------HHHHH
T ss_pred ----------HHHHhhhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHH---------------------HHHHH
Confidence 11111111111 01111111 22333 6666666777665 56677
Q ss_pred HHHHHhcCCcEEEEEccC----------------HHHHHhhcCEEEEEeC
Q 022337 237 LVKLKKKHGMTIVMVSHS----------------IKQIQRIADVVCLLVN 270 (298)
Q Consensus 237 l~~l~~~~g~tii~itHd----------------~~~~~~~~d~v~vl~~ 270 (298)
|..++++.+.|||++.|- -..+..++|-++.++.
T Consensus 180 L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 180 IAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp HHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 777877789999999887 2336678899998885
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.14 E-value=4.3e-12 Score=106.97 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=83.3
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE--eCCCCCH----HHHhcceEEEeCCCCC-C-c-
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR--DITDLDV----LSLRRKVGMLFQIPAL-F-E- 151 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~--~i~~~~~----~~~~~~ig~v~Q~~~l-~-~- 151 (298)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++..... ...+..|.++||++.- + +
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7899999999 99999999999999999999999887765432221 1111100 0123569999998641 1 1
Q ss_pred ---ccHHHHhHh-C---ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCC
Q 022337 152 ---GTVVDNIRY-G---PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSA 224 (298)
Q Consensus 152 ---~tv~eni~~-~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~ 224 (298)
.++...+.- + ....+......++.++++.++++.+ ...-++.||.+++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~----~~~~~~qg~~~~l~~------------------- 153 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPD----GYNIVLQGDITKFIK------------------- 153 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTT----CTTEECTTCTTHHHH-------------------
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCC----CCEEEEcccHHHHHh-------------------
Confidence 122221111 0 0111222345678889999998632 123578888877652
Q ss_pred CCHHHHHHHHHHHH
Q 022337 225 LDPISTQNIEDVLV 238 (298)
Q Consensus 225 LD~~~~~~~~~~l~ 238 (298)
++|..++++++.+.
T Consensus 154 ~~~~~r~~~ld~~~ 167 (182)
T 3kta_A 154 MSPLERRLLIDDIS 167 (182)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 46777777766653
No 167
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.08 E-value=3e-13 Score=128.24 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=85.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHH
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDN 157 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~en 157 (298)
.+++++|+.+++|++++|+||||||||||+++|+|. .+|++...+ ... ..+...+|++||.+.++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 589999999999999999999999999999999995 478776511 111 11222477778876421 122
Q ss_pred hHhCcc-ccCCCc-c----HHHHHHHHHH---------------cCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeE
Q 022337 158 IRYGPQ-LRGKKL-T----ENEVYKLLSL---------------ADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVL 216 (298)
Q Consensus 158 i~~~~~-~~~~~~-~----~~~~~~~l~~---------------~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~il 216 (298)
+.+... .++... . ...+...++- .-+.....+.....+++|++||++.+.+++.+|+++
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 222111 000000 0 0122333320 001112344566789999999999988889999988
Q ss_pred E-EeCcCC
Q 022337 217 L-LDEPTS 223 (298)
Q Consensus 217 l-LDEPts 223 (298)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 8 999987
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.05 E-value=1.2e-11 Score=105.58 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH
Q 022337 203 VALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 203 v~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~ 241 (298)
...|++++.+|+++++| ||++|+.+..++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
No 169
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.02 E-value=1.3e-11 Score=110.24 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=54.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh---cCCCCCccEEE--------ECCEeCC-CCCHHHHhcceEEEeCC
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN---RLWEPPSGTVF--------LDGRDIT-DLDVLSLRRKVGMLFQI 146 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~---gl~~p~~G~I~--------i~g~~i~-~~~~~~~~~~ig~v~Q~ 146 (298)
++++.+ ++|++++|+|||||||||++|+|+ |+..|++|.|+ .+|.++. ......+++.+++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 8998884 33456778899999986
Q ss_pred C
Q 022337 147 P 147 (298)
Q Consensus 147 ~ 147 (298)
+
T Consensus 96 ~ 96 (252)
T 4e22_A 96 Q 96 (252)
T ss_dssp E
T ss_pred C
Confidence 4
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.97 E-value=3.3e-11 Score=103.54 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=51.1
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHhHh
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNIRY 160 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni~~ 160 (298)
+-.++-++|++++|+||||||||||+++|++.+ |.+.++|.++... ....+..+|+++|++..++. ++.+++..
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 334667899999999999999999999999987 8999999877431 11223357889998665543 66666643
No 171
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.96 E-value=4.4e-11 Score=107.23 Aligned_cols=53 Identities=28% Similarity=0.360 Sum_probs=36.2
Q ss_pred CeEEEEeE-EEEeCCCCcceeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 62 PKFRVREL-RKESDDGAPILKGVNMEIPK---GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 62 ~~l~~~~l-~~~y~~~~~vL~~isl~i~~---Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++++++|+ +++|.++.++|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 99994456899999999999 9999999999999999999999854
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.96 E-value=1.4e-10 Score=109.34 Aligned_cols=143 Identities=20% Similarity=0.316 Sum_probs=89.3
Q ss_pred CcE-EEEEcCCCccHHHHHHHHhcCCC-----------CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCC-c--ccH
Q 022337 90 GVI-MGIIGPSGSGKSTLLRALNRLWE-----------PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF-E--GTV 154 (298)
Q Consensus 90 Ge~-~~iiG~nGsGKSTLlk~l~gl~~-----------p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~-~--~tv 154 (298)
|-. ++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.+.|.-. . .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH
Confidence 444 99999999999999999999876 67799999987642 122356666544211 1 122
Q ss_pred HHHhHhCc---cccC-C-Cc--cH---HHHHHHHHHcCCCch---hhcCCCCCCChhHHHHHHHH----HHH-cCCCCeE
Q 022337 155 VDNIRYGP---QLRG-K-KL--TE---NEVYKLLSLADLDSS---FLNKTGGEISVGQAQRVALA----RTL-ANEPEVL 216 (298)
Q Consensus 155 ~eni~~~~---~~~~-~-~~--~~---~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkQRv~iA----ral-~~~p~il 216 (298)
.+.+...- .... . .. .. +.+.+.++.+++.+. +...++..+|+|++||+.++ +++ ..+|++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 22222110 0000 1 11 11 124566777665321 11345667898999988887 666 545555
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHHHh
Q 022337 217 LLDEPTSALDPISTQNIEDVLVKLKK 242 (298)
Q Consensus 217 lLDEPts~LD~~~~~~~~~~l~~l~~ 242 (298)
+|+|++|..+...+++.|.++..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988654
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.94 E-value=1.6e-10 Score=116.87 Aligned_cols=134 Identities=15% Similarity=0.120 Sum_probs=88.7
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhC
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP--PSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYG 161 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p--~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~ 161 (298)
|+++++|..++|+|+||||||||++.|++...+ ..|+| .+|..+.++...+.++.+++.+|...++..++..|+.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 67988 788888777777777888888887655433322222211
Q ss_pred ccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH
Q 022337 162 PQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~ 241 (298)
+ |.. + ++ .......-..++-++++| |+.++++.++. +++.+.+
T Consensus 82 p-------------------G~~-~--------f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~~-- 124 (665)
T 2dy1_A 82 P-------------------GYG-D--------FV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAER-- 124 (665)
T ss_dssp C-------------------CSG-G--------GH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHHH--
T ss_pred C-------------------Ccc-c--------hH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHHH--
Confidence 0 100 0 10 011112224677888999 99999987763 3333322
Q ss_pred hcCCcEEEEEccCHHH
Q 022337 242 KKHGMTIVMVSHSIKQ 257 (298)
Q Consensus 242 ~~~g~tii~itHd~~~ 257 (298)
.+..+|++.|.++.
T Consensus 125 --~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 125 --LGLPRMVVVTKLDK 138 (665)
T ss_dssp --TTCCEEEEEECGGG
T ss_pred --ccCCEEEEecCCch
Confidence 37888889998875
No 174
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.92 E-value=4.4e-11 Score=118.52 Aligned_cols=92 Identities=25% Similarity=0.264 Sum_probs=61.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEE-ECCEeCCC-------CCHH---HHhcceEEEeCCCCCCccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVF-LDGRDITD-------LDVL---SLRRKVGMLFQIPALFEGT 153 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~-i~g~~i~~-------~~~~---~~~~~ig~v~Q~~~l~~~t 153 (298)
.+++|++++|+|+||||||||+|+|+|.+.|++| +|. ++|.++.. ++.. ..++++++++|+ .+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~-----l~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE-----IT 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH-----HH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH-----HH
Confidence 5789999999999999999999999999999987 784 88876521 1211 223456777775 23
Q ss_pred HHHHhHhCccccCCCccHHHHHHHHHHcC
Q 022337 154 VVDNIRYGPQLRGKKLTENEVYKLLSLAD 182 (298)
Q Consensus 154 v~eni~~~~~~~~~~~~~~~~~~~l~~~~ 182 (298)
..+|+.+..........++++.++++.+|
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 34444433211111223456777888776
No 175
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.89 E-value=2.5e-11 Score=118.90 Aligned_cols=144 Identities=20% Similarity=0.235 Sum_probs=96.3
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGML 143 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v 143 (298)
.+++++...|. +..+++++++++++| +.|+||||+|||||+|+|++... .|.+.++|.++.........+++..+
T Consensus 41 ~~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 41 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 44555655553 446899999999999 89999999999999999999875 78999999877543333334557788
Q ss_pred eCCCC-CCcc-cHHHHhH-hCccccC-CCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe
Q 022337 144 FQIPA-LFEG-TVVDNIR-YGPQLRG-KKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD 219 (298)
Q Consensus 144 ~Q~~~-l~~~-tv~eni~-~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD 219 (298)
||... ..+. .+.|++. ++..... .....++..+.+.. + ..+||||++|+..+++|..++|++ ||
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~------L----L~~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ------L----LVEMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH------H----HHHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH------H----HHHhcccccCccEEEEEecCChhh--cC
Confidence 88764 3443 6677774 3322110 00011111112111 1 124788888998999999999987 89
Q ss_pred CcCCC
Q 022337 220 EPTSA 224 (298)
Q Consensus 220 EPts~ 224 (298)
|+.-.
T Consensus 184 ~aLlr 188 (499)
T 2dhr_A 184 PALLR 188 (499)
T ss_dssp TTTSS
T ss_pred ccccc
Confidence 88753
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.87 E-value=5e-10 Score=103.81 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=63.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH-----hcceEEE-eCCCCC
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDV----LSL-----RRKVGML-FQIPAL 149 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~----~~~-----~~~ig~v-~Q~~~l 149 (298)
++++||++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+.+... ..+ +..++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999999999999998888754221 223 4568999 776555
Q ss_pred Ccc-cHHHHhH
Q 022337 150 FEG-TVVDNIR 159 (298)
Q Consensus 150 ~~~-tv~eni~ 159 (298)
.+. ++.+++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 553 5566654
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.85 E-value=9.5e-10 Score=93.83 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=40.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA 148 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~ 148 (298)
++|++|++++|+||||||||||+++|++++.|+.| +.+ +....... ......++|+||++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 46889999999999999999999999999978666 212 22222111 111234788998764
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.84 E-value=4.5e-10 Score=95.35 Aligned_cols=30 Identities=43% Similarity=0.568 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCcc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSG 119 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G 119 (298)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999999984444
No 179
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.82 E-value=1.3e-10 Score=99.81 Aligned_cols=61 Identities=30% Similarity=0.433 Sum_probs=47.7
Q ss_pred EeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE--EECCEeCC
Q 022337 67 RELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV--FLDGRDIT 129 (298)
Q Consensus 67 ~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I--~i~g~~i~ 129 (298)
+|++..+ +...+.+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4566655 45678888999999999999999999999999999999987 77988 88887654
No 180
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.81 E-value=2.8e-09 Score=109.57 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC-CCCHHHHHHHHHHHHHHHhcCCcEEEE-EccCHHHHHhhcCEE
Q 022337 190 KTGGEISVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVM-VSHSIKQIQRIADVV 265 (298)
Q Consensus 190 ~~~~~LSgGqkQRv~iAral~~~p~illLDEPts-~LD~~~~~~~~~~l~~l~~~~g~tii~-itHd~~~~~~~~d~v 265 (298)
..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+++.+.+... ...+|++ .||+.+.+.++++..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 3455789999999999999999999999999996 9998877777776665543 2567777 499998888887753
No 181
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.81 E-value=5.2e-09 Score=101.91 Aligned_cols=117 Identities=21% Similarity=0.331 Sum_probs=78.7
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
...++++++.+++| +.|+||+|+|||||+|.+++... ..+-++ +..+
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~----------------------~~f~~i---------s~~~ 84 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN----------------------VPFFHI---------SGSD 84 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT----------------------CCEEEE---------EGGG
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC----------------------CCeeeC---------CHHH
Confidence 35678888888888 78999999999999999998321 001111 1000
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcC----------CCCC
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPT----------SALD 226 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPt----------s~LD 226 (298)
.+ ....+ .+++++|-.+++|....|.+|++||+. ++.|
T Consensus 85 ~~------------------------------~~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~ 132 (476)
T 2ce7_A 85 FV------------------------------ELFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGH 132 (476)
T ss_dssp TT------------------------------TCCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------
T ss_pred HH------------------------------HHHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCc
Confidence 00 00000 267889999999999999999999993 4677
Q ss_pred HHHHHHHHHHHHHHH---hcCCcEEEEEccCHHHH
Q 022337 227 PISTQNIEDVLVKLK---KKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 227 ~~~~~~~~~~l~~l~---~~~g~tii~itHd~~~~ 258 (298)
+...+.+.+++..+. ...+..||.+||+++.+
T Consensus 133 ~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 133 DEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 776666767666552 23478899999998654
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.79 E-value=9.8e-09 Score=96.06 Aligned_cols=170 Identities=16% Similarity=0.200 Sum_probs=89.1
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc--CCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCC-CC-cc
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR--LWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPA-LF-EG 152 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g--l~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~-l~-~~ 152 (298)
..+|++++++++ .++|+|++|||||||++.|+| ++++.+|.+......+.-.+...-....+..++.+. .| +.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 358999999998 899999999999999999999 667777776544332210000000122333333322 11 11
Q ss_pred -cHHHHh-----HhCccccCCCcc--------HHH-HHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEE
Q 022337 153 -TVVDNI-----RYGPQLRGKKLT--------ENE-VYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 153 -tv~eni-----~~~~~~~~~~~~--------~~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~ill 217 (298)
.+.+.+ .......+.... ... -..+.+.-|+. ......+.++.++|+..+++..+.+|+++|
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~---~~~~~~q~~~~~~~~~~~~~~~i~~~d~ii 177 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLT---KVAVDGQSDSIVKDIENMVRSYIEKPNCII 177 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBC---SSCCTTCCSSHHHHHHHHHHHHHHSSSEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCC---cCCcCCCchhHHHHHHHHHHHHhhcCCeEE
Confidence 222222 211110000000 000 00011111221 011123467889999999999999999888
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itH 253 (298)
+.-..+..|... ...+++++++......+++++|.
T Consensus 178 lvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 178 LAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred EEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 875444455443 55566777665442357777765
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.78 E-value=2.1e-09 Score=92.24 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=78.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCccH
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLTE 171 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 171 (298)
+++|+|||||||||+.++|+++ |...+++.+ +.+.+. + + + .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~--------~~~~~~---~-----~--------------~----~ 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV--------VAREVV---A-----K--------------D----S 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH--------HHHHTT---C-----S--------------S----C
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH--------HHHHHc---c-----C--------------C----h
Confidence 6899999999999999999993 544444321 111100 0 0 0 1
Q ss_pred HHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 022337 172 NEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251 (298)
Q Consensus 172 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~i 251 (298)
..+.++.+.+|.. . -.+.|+.+|..+++.+..+|+.+..+ .+.++|..++.+.+.+.+. .+.++|+.
T Consensus 45 ~~~~~i~~~~g~~--~------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~ 111 (206)
T 1jjv_A 45 PLLSKIVEHFGAQ--I------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFV 111 (206)
T ss_dssp HHHHHHHHHHCTT--C------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEE
T ss_pred HHHHHHHHHhCHH--H------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEE
Confidence 2244455556643 1 13678999999999988888754333 3456777777766655433 25588888
Q ss_pred ccCHHHH--HhhcCEEEEEeC
Q 022337 252 SHSIKQI--QRIADVVCLLVN 270 (298)
Q Consensus 252 tHd~~~~--~~~~d~v~vl~~ 270 (298)
+|.+.+. ...||.+++++-
T Consensus 112 ~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 112 VPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp CTTTTTTTCGGGCSEEEEEEC
T ss_pred echhhhcCcHhhCCEEEEEEC
Confidence 9987665 677999999864
No 184
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.75 E-value=8.7e-09 Score=96.42 Aligned_cols=125 Identities=19% Similarity=0.165 Sum_probs=81.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKK 168 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~ 168 (298)
..-.++++|++|+|||||++.|+|.. +. ..+.+.... ...++.+.++.. . ..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t~-----~~~~~~~~~~~~----------~--~~----- 217 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTTR-----GINVGQFEDGYF----------R--YQ----- 217 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCSS-----CEEEEEEEETTE----------E--EE-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCeee-----ceeEEEEEecCc----------e--EE-----
Confidence 44579999999999999999999865 21 111111110 112333332210 0 00
Q ss_pred ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEe-CcCCCCCHHHHHHHHHHHHHHHhcCCcE
Q 022337 169 LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLD-EPTSALDPISTQNIEDVLVKLKKKHGMT 247 (298)
Q Consensus 169 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLD-EPts~LD~~~~~~~~~~l~~l~~~~g~t 247 (298)
+++..|. .+..+.++|+|++|++. +.+...++-++++| +|.+++|......+++.+.+... ++.
T Consensus 218 --------l~Dt~G~----~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~p 282 (357)
T 2e87_A 218 --------IIDTPGL----LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLP 282 (357)
T ss_dssp --------EEECTTT----SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSC
T ss_pred --------EEeCCCc----cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCC
Confidence 0111222 23456689999999887 66666788899999 99999999998888888877643 678
Q ss_pred EEEEc--cCHH
Q 022337 248 IVMVS--HSIK 256 (298)
Q Consensus 248 ii~it--Hd~~ 256 (298)
+|++. ||+.
T Consensus 283 iilV~NK~Dl~ 293 (357)
T 2e87_A 283 FLVVINKIDVA 293 (357)
T ss_dssp EEEEECCTTTC
T ss_pred EEEEEECcccC
Confidence 88888 8874
No 185
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.66 E-value=1.8e-09 Score=93.39 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=56.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC-------------CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCC
Q 022337 84 NMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-------------PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF 150 (298)
Q Consensus 84 sl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~-------------p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~ 150 (298)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+....+...+++.+ .|+..++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34456899999999999999999999999876 66777 578776556666665544 3444444
Q ss_pred cccHHHHhHhCccccCCCccHHHHHHHHHH
Q 022337 151 EGTVVDNIRYGPQLRGKKLTENEVYKLLSL 180 (298)
Q Consensus 151 ~~tv~eni~~~~~~~~~~~~~~~~~~~l~~ 180 (298)
..++.+|. ||. ..+.++++++.
T Consensus 88 ~~~~~~n~-YGt-------~~~~v~~~l~~ 109 (197)
T 3ney_A 88 FGSYQGNM-FGT-------KFETVHQIHKQ 109 (197)
T ss_dssp EEEETTEE-EEE-------EHHHHHHHHHT
T ss_pred hhhhhcee-ccc-------chhhHHHHHhc
Confidence 45666662 331 23446666654
No 186
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.66 E-value=3.5e-08 Score=92.07 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=84.8
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVD 156 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~e 156 (298)
.+-|+.+.--+.+|+++.|.|++|+|||||+..++.-.....+ .+.|+.=+ ++..+
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE-----ms~~q 88 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE-----MSAEQ 88 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS-----SCHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC-----CCHHH
Confidence 3456666657999999999999999999999888764322111 23332211 11111
Q ss_pred HhHhCccccCCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHH
Q 022337 157 NIRYGPQLRGKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIED 235 (298)
Q Consensus 157 ni~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~ 235 (298)
.. .++.. ...+++. .+.+ ..||.+++||+..|...+.+++++|.|+|...+ .++..
T Consensus 89 l~-------------~Rlls--~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si-----~~i~~ 145 (338)
T 4a1f_A 89 LA-------------LRALS--DLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI-----EQIRL 145 (338)
T ss_dssp HH-------------HHHHH--HHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH-----HHHHH
T ss_pred HH-------------HHHHH--HhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH-----HHHHH
Confidence 11 11111 1223321 2222 479999999999999999999999999987543 35666
Q ss_pred HHHHHHhcC-CcEEEEEcc
Q 022337 236 VLVKLKKKH-GMTIVMVSH 253 (298)
Q Consensus 236 ~l~~l~~~~-g~tii~itH 253 (298)
.++++.++. |..+|+|-|
T Consensus 146 ~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 146 QLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 677776665 788888853
No 187
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.65 E-value=4.9e-09 Score=88.47 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=30.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEEE
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVFL 123 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~i 123 (298)
.+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 37999999999999999999999999874 5566654
No 188
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.58 E-value=1.9e-07 Score=86.94 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=84.8
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRL--WEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~ 163 (298)
-+++|+++.|.||+|||||||+..++.. .++..| |. ..++.|+.-+..+-+..+.+...-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~----------~~~vlyi~~E~~~~~~~l~~~~~~--- 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YP----------GGKIIFIDTENTFRPDRLRDIADR--- 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BC----------CCEEEEEESSSCCCHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CC----------CCeEEEEECCCCCCHHHHHHHHHH---
Confidence 4889999999999999999999998874 322100 00 012333332222111122221110
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH-HHHHHHHHHHc----CCCCeEEEeCcCCCCCHH----------
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ-AQRVALARTLA----NEPEVLLLDEPTSALDPI---------- 228 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kQRv~iAral~----~~p~illLDEPts~LD~~---------- 228 (298)
.+.. . .++++.+.+ . ...++.+ .+.+..++.++ .+++++++|+.++-....
T Consensus 180 -~g~~--~---~~~l~~l~~----~----~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r 245 (343)
T 1v5w_A 180 -FNVD--H---DAVLDNVLY----A----RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAER 245 (343)
T ss_dssp -TTCC--H---HHHHHTEEE----E----ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHH
T ss_pred -cCCC--H---HHHHhceeE----e----ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHH
Confidence 0111 1 112222111 0 1122332 24455555555 679999999999866432
Q ss_pred --HHHHHHHHHHHHHhcCCcEEEEEccCHHH-------------------HHhhcCEEEEEeC
Q 022337 229 --STQNIEDVLVKLKKKHGMTIVMVSHSIKQ-------------------IQRIADVVCLLVN 270 (298)
Q Consensus 229 --~~~~~~~~l~~l~~~~g~tii~itHd~~~-------------------~~~~~d~v~vl~~ 270 (298)
...+++..|++++++.+.+||+++|.... +..++|-++.|+.
T Consensus 246 ~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r 308 (343)
T 1v5w_A 246 QQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRK 308 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEECC-------------------CCTTTTSSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence 13456666777777779999999996532 3456788888874
No 189
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.57 E-value=1.4e-09 Score=94.28 Aligned_cols=58 Identities=26% Similarity=0.420 Sum_probs=46.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC---CCCccEEEE--------CCEeCCC-CCHHHHhcceEEEeCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW---EPPSGTVFL--------DGRDITD-LDVLSLRRKVGMLFQIP 147 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~---~p~~G~I~i--------~g~~i~~-~~~~~~~~~ig~v~Q~~ 147 (298)
+.+++|+|||||||||+.++|++.+ .++.|++.. +|.++.. ....++++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999876 788999987 6776542 22345678899999875
No 190
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.56 E-value=2.6e-08 Score=85.22 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=24.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46999999999999999999999999999999999765
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.56 E-value=1.2e-07 Score=90.91 Aligned_cols=180 Identities=14% Similarity=0.135 Sum_probs=102.2
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-HhcceEEEe
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLS-LRRKVGMLF 144 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~-~~~~ig~v~ 144 (298)
.+++++.|++ .. ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|+.+....+ ++.
T Consensus 79 ~~~L~~~~~~-~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~------ 147 (425)
T 2ffh_A 79 YEALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL------ 147 (425)
T ss_dssp HHHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH------
T ss_pred HHHHHHHhCC-Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH------
Confidence 3456677743 22 678888 89999999999999999999999999999999999887765421111 110
Q ss_pred CCCCCCcccHHHHhHhCccccCCCccHHH-HHHHHHHc---CCCchhhcCCCCCCC---hhHHHHHHHHHHHcCCCCeEE
Q 022337 145 QIPALFEGTVVDNIRYGPQLRGKKLTENE-VYKLLSLA---DLDSSFLNKTGGEIS---VGQAQRVALARTLANEPEVLL 217 (298)
Q Consensus 145 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~-~~~~l~~~---~l~~~~~~~~~~~LS---gGqkQRv~iAral~~~p~ill 217 (298)
..+..-+.....+...+... +.++++.+ +.+--+.|..+ .++ .-+.+...+++++..++-+++
T Consensus 148 ---------~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG-~l~~d~~l~~el~~i~~~~~pd~vlLV 217 (425)
T 2ffh_A 148 ---------LGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAG-RLQIDEPLMGELARLKEVLGPDEVLLV 217 (425)
T ss_dssp ---------HHHHHTCCEEECCTTCCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ---------hcccCCccEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCC-cccccHHHHHHHHHhhhccCCceEEEE
Confidence 01111111000000011111 12333322 22212445444 232 346677788888877777888
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCH---------HHHHhhcCEEEEEeCCEE
Q 022337 218 LDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSI---------KQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 218 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~---------~~~~~~~d~v~vl~~G~i 273 (298)
+| ++++.|... .++.+.+..+.+-|++|+-- +......-.|.++..|+-
T Consensus 218 vD-a~tgq~av~------~a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~ 275 (425)
T 2ffh_A 218 LD-AMTGQEALS------VARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEK 275 (425)
T ss_dssp EE-GGGTTHHHH------HHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ee-ccchHHHHH------HHHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCC
Confidence 88 456655442 23333333466777777631 122333456777766653
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.55 E-value=4e-08 Score=91.86 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=36.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
+++.+++|+|++|||||||++.|+|.+.|+.|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 467899999999999999999999999888888888776543
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.55 E-value=2.9e-07 Score=84.91 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=81.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCC-ccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPP-SGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQ 163 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~-~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~ 163 (298)
-+++|+++.|.||+|||||||+..++.-. .|. .| |. ..++.|+.-+..+-+..+.+...-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~----------~~~vlyi~~e~~~~~~~l~~~~~~--- 164 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL----------SGKAVYIDTEGTFRWERIENMAKA--- 164 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC----------SCEEEEEESSSCCCHHHHHHHHHH---
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC----------CCeEEEEECCCCCCHHHHHHHHHH---
Confidence 58999999999999999999999887643 331 01 00 012333322221111122221110
Q ss_pred ccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChh-HHHHHHHHHHHc---CCCCeEEEeCcCCCCCH--------HH--
Q 022337 164 LRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVG-QAQRVALARTLA---NEPEVLLLDEPTSALDP--------IS-- 229 (298)
Q Consensus 164 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG-qkQRv~iAral~---~~p~illLDEPts~LD~--------~~-- 229 (298)
.+.. .+ ++++.+-+ . ...+.. +.+.+..++.++ .+|+++++|+.++-... ..
T Consensus 165 -~g~~--~~---~~~~~l~~----~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~ 230 (324)
T 2z43_A 165 -LGLD--ID---NVMNNIYY----I----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQ 230 (324)
T ss_dssp -TTCC--HH---HHHHTEEE----E----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHH
T ss_pred -hCCC--HH---HHhccEEE----E----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHH
Confidence 0111 11 11121111 0 112232 235677777777 67999999999876532 11
Q ss_pred --HHHHHHHHHHHHhcCCcEEEEEccCHHH----------------HHhhcCEEEEEeC
Q 022337 230 --TQNIEDVLVKLKKKHGMTIVMVSHSIKQ----------------IQRIADVVCLLVN 270 (298)
Q Consensus 230 --~~~~~~~l~~l~~~~g~tii~itHd~~~----------------~~~~~d~v~vl~~ 270 (298)
..+++..|++++++.+.+||++.|-... +...+|.++.++.
T Consensus 231 ~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 231 QKLNKHLHQLTRLAEVYDIAVIITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEC------------------------CEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 2455666777777779999999885432 3456777787763
No 194
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.54 E-value=2.4e-07 Score=86.03 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=37.9
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHh--cCCcEEEEEccCHHHHHhh
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKK--KHGMTIVMVSHSIKQIQRI 261 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~--~~g~tii~itHd~~~~~~~ 261 (298)
.+|.+|++||+... |+.....+...+.++.. ..+.++|++||+.+....+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 56889999999875 88888888887766543 1378999999998655443
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.54 E-value=1.4e-08 Score=89.08 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=47.4
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCC------CHHH----HhcceEEEeCCCCCC
Q 022337 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL------DVLS----LRRKVGMLFQIPALF 150 (298)
Q Consensus 83 isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~------~~~~----~~~~ig~v~Q~~~l~ 150 (298)
-+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+++...+ .... .++.+++++|.+.++
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 3445689999999999999999999999998 78999998765311 1111 134578888865443
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.50 E-value=2.2e-09 Score=99.53 Aligned_cols=136 Identities=16% Similarity=0.174 Sum_probs=77.7
Q ss_pred EEEEeCCCCcceeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHhcCCC--CCccEEEECCEeCCCCCHHHHhcce
Q 022337 69 LRKESDDGAPILKGVNMEIPKGV------IMGIIGPSGSGKSTLLRALNRLWE--PPSGTVFLDGRDITDLDVLSLRRKV 140 (298)
Q Consensus 69 l~~~y~~~~~vL~~isl~i~~Ge------~~~iiG~nGsGKSTLlk~l~gl~~--p~~G~I~i~g~~i~~~~~~~~~~~i 140 (298)
+++.| ++.+.|++++..+.+++ ++||+||||||||||+++|.+++. |++|.|
T Consensus 66 l~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v------------------- 125 (321)
T 3tqc_A 66 LSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV------------------- 125 (321)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE-------------------
T ss_pred HHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE-------------------
Confidence 34445 35678999999998887 999999999999999999999987 445544
Q ss_pred EEEeCCCCCCcccHHHHhHhCccccCC--CccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 141 GMLFQIPALFEGTVVDNIRYGPQLRGK--KLTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 141 g~v~Q~~~l~~~tv~eni~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
+++.++...++....+..... ...+. ..+.+...+.++.+.-...-...+ .+|.+..+|+.-+...+..|+++|+
T Consensus 126 ~~i~~D~f~~~~~~l~~~~~~-~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIv 202 (321)
T 3tqc_A 126 EVITTDGFLYSNAKLEKQGLM-KRKGFPESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVIL 202 (321)
T ss_dssp EEEEGGGGBCCHHHHHHTTCG-GGTTSGGGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEE
T ss_pred EEEeecccccchhhhhhHHHH-hhccCcccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEE
Confidence 344444332222222211100 00111 112333444443331111001111 2344444444333445678999999
Q ss_pred eCcCCCCCH
Q 022337 219 DEPTSALDP 227 (298)
Q Consensus 219 DEPts~LD~ 227 (298)
+.+..-.|+
T Consensus 203 EGi~lL~~~ 211 (321)
T 3tqc_A 203 EGLNILQTG 211 (321)
T ss_dssp ECTTTTCCC
T ss_pred Ecccccccc
Confidence 999988776
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.49 E-value=2.2e-08 Score=85.97 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=40.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD 132 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~ 132 (298)
..++|++++|+|+||||||||++.|++++++..|.|.+.+.+....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 36789999999999999999999999999988999988776654433
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.47 E-value=2.6e-07 Score=88.78 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
++.+++++|||||||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5889999999999999999999999998888888866664
No 199
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.45 E-value=1.8e-07 Score=89.87 Aligned_cols=160 Identities=22% Similarity=0.207 Sum_probs=85.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC------------CCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcc-cHHHHh
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE------------PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVVDNI 158 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~------------p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~-tv~eni 158 (298)
.++|+|+||||||||++.|+|... |.+|.+.++|+++.-++..-.++..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999864 6789999999875433222233445555566555543 555666
Q ss_pred HhCc------ccc-CCCccHHHHHHHHHHcCCCch----hhcCCC-CCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCC
Q 022337 159 RYGP------QLR-GKKLTENEVYKLLSLADLDSS----FLNKTG-GEISVGQAQRVALARTLA--NEPEVLLLDEPTSA 224 (298)
Q Consensus 159 ~~~~------~~~-~~~~~~~~~~~~l~~~~l~~~----~~~~~~-~~LSgGqkQRv~iAral~--~~p~illLDEPts~ 224 (298)
...- ... +....+.++.+.+...+..-- ..|... .+-+.-+- .-.+++.+. ...+++ ++|+
T Consensus 262 ~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~SA 336 (439)
T 1mky_A 262 EKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI----FTSA 336 (439)
T ss_dssp HHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE----ECBT
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE----EEEC
Confidence 5431 111 112223445555665554210 111110 01111111 113445443 344444 5999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 225 LDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 225 LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
++-.+..++++.+.+..++. +.-+.|+.++.+
T Consensus 337 ~~g~gv~~l~~~i~~~~~~~--~~~i~t~~ln~~ 368 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYASY--TTKVPSSAINSA 368 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHH--TCCCCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhh--cccCCHHHHHHH
Confidence 99999999999988765432 234567776544
No 200
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.42 E-value=1.8e-08 Score=92.25 Aligned_cols=147 Identities=17% Similarity=0.189 Sum_probs=84.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC-CEeCCCCCHHHHhcceEEEeCCCCCC--cccHHHHhHhCcccc
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD-GRDITDLDVLSLRRKVGMLFQIPALF--EGTVVDNIRYGPQLR 165 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~-g~~i~~~~~~~~~~~ig~v~Q~~~l~--~~tv~eni~~~~~~~ 165 (298)
++.+++|+|++|||||||++.|.|.. +.+. +..-. ...+..|+++++..-+ -.|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDTp----------- 64 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDTP----------- 64 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESSS-----------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEECc-----------
Confidence 44589999999999999999999963 2221 11101 1123467777654211 0111
Q ss_pred CCC-ccHHHHHH--------HHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCHHH-HHHH
Q 022337 166 GKK-LTENEVYK--------LLSLADLDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDPIS-TQNI 233 (298)
Q Consensus 166 ~~~-~~~~~~~~--------~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~~~-~~~~ 233 (298)
|.. .......+ .++.+++--...+. ..+|+|++ .+++++. ..|.++++ +.+|... +..+
T Consensus 65 G~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 65 GLHMEEKRAINRLMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp SCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred CCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 100 00001111 11111111011222 23898886 5566666 78999999 7899877 6778
Q ss_pred HHHHHHHHhcCCc--EEEEEccCHHHHHhhcCEEE
Q 022337 234 EDVLVKLKKKHGM--TIVMVSHSIKQIQRIADVVC 266 (298)
Q Consensus 234 ~~~l~~l~~~~g~--tii~itHd~~~~~~~~d~v~ 266 (298)
.+.+.++.+..|. .+.+++|+-+.+..++|.+.
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 8888888765453 56677787766666666653
No 201
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.39 E-value=6.2e-08 Score=80.63 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=39.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc-ceEEEeCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRR-KVGMLFQI 146 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~-~ig~v~Q~ 146 (298)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++.. ...+++ .+|+.+|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 469999999999999999999999975 889998877642 112222 35665554
No 202
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.37 E-value=1.9e-07 Score=80.54 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=30.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC-CccEEE
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP-PSGTVF 122 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p-~~G~I~ 122 (298)
++|++++|+||||||||||++.|++.++| ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 58999999999999999999999999987 344443
No 203
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.32 E-value=7.6e-07 Score=81.88 Aligned_cols=132 Identities=12% Similarity=0.127 Sum_probs=81.5
Q ss_pred CCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHH
Q 022337 76 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVV 155 (298)
Q Consensus 76 ~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~ 155 (298)
+.+.|+.+.--+++|+++.|.|++|+|||||+..++.-.-- .| ..+.|+.=+ .+..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE-----~s~~ 109 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE-----MGKK 109 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----SCHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----CCHH
Confidence 34567777766999999999999999999999888752110 01 123333322 1111
Q ss_pred HHhHhCccccCCCccHHHHHHHHH-HcCCCc-hhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHH
Q 022337 156 DNIRYGPQLRGKKLTENEVYKLLS-LADLDS-SFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNI 233 (298)
Q Consensus 156 eni~~~~~~~~~~~~~~~~~~~l~-~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~ 233 (298)
+. ...++. ..+++- .+.+.. ..||.+++||+..|...+.++++++.|+|... ..++
T Consensus 110 ~l----------------~~R~~~~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i 167 (315)
T 3bh0_A 110 EN----------------IKRLIVTAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYI 167 (315)
T ss_dssp HH----------------HHHHHHHHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHH
T ss_pred HH----------------HHHHHHHHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHH
Confidence 11 111111 123321 121111 13899999999999999888999999998643 3445
Q ss_pred HHHHHHHHhcCCcE--EEEEcc
Q 022337 234 EDVLVKLKKKHGMT--IVMVSH 253 (298)
Q Consensus 234 ~~~l~~l~~~~g~t--ii~itH 253 (298)
...++++.++.|.. +|+|-|
T Consensus 168 ~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 168 WSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHhcCCCCeEEEEeC
Confidence 66666666555777 888854
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.31 E-value=3.1e-07 Score=78.59 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=29.3
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
++--++++|++++|+|++|||||||.+.|++.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3444678899999999999999999999999874
No 205
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.26 E-value=1.2e-07 Score=93.58 Aligned_cols=60 Identities=18% Similarity=0.338 Sum_probs=48.8
Q ss_pred EEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe
Q 022337 66 VRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD 127 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~ 127 (298)
++++.+.|. +..+++++++++ +|+.++|+||||+|||||+|+|++.+.+..|.|.+.|..
T Consensus 86 ~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 86 LEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp CHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 344555552 345788899988 899999999999999999999999999999999887743
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.25 E-value=6.2e-06 Score=74.19 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=44.6
Q ss_pred ChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHH----------HHHHHHHHHHHHHhc---CCcEEEEEccCHHH----H
Q 022337 196 SVGQAQRVALARTLANEPEVLLLDEPTSALDPI----------STQNIEDVLVKLKKK---HGMTIVMVSHSIKQ----I 258 (298)
Q Consensus 196 SgGqkQRv~iAral~~~p~illLDEPts~LD~~----------~~~~~~~~l~~l~~~---~g~tii~itHd~~~----~ 258 (298)
++++++|..++++...+|.+|++||+.+-++.. ....++..+...... .+..+|.+|++++. +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 357778888888888999999999998766532 223344444433211 24567888887532 2
Q ss_pred HhhcCEEEEE
Q 022337 259 QRIADVVCLL 268 (298)
Q Consensus 259 ~~~~d~v~vl 268 (298)
.+-+++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 2235555444
No 207
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.22 E-value=8e-08 Score=99.19 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=28.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
|.+++|+.+.|+||||||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999999999874
No 208
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.22 E-value=1.2e-07 Score=88.22 Aligned_cols=65 Identities=23% Similarity=0.281 Sum_probs=53.6
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
++.+++.+.|. ...+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+..
T Consensus 31 ie~~~~~~~~~-~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 31 VESRHPRHQAL-STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHCCCHHHHHH-HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred hhcCCchhhhH-HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 44445555552 446899999999999999999999999999999999999888888888766653
No 209
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.21 E-value=2.8e-07 Score=85.15 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
..+..+.|.||+|+|||||++.+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999877553
No 210
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.17 E-value=2.4e-07 Score=87.63 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=47.9
Q ss_pred eEEEEeEEEEeCCCCccee--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 63 KFRVRELRKESDDGAPILK--------------GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 63 ~l~~~~l~~~y~~~~~vL~--------------~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.++|+++.|+.++.+|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3778899999987778999 999999999999999999999999999999875
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.15 E-value=7.1e-07 Score=73.78 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
.|++++|+||||||||||+++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 55654
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.12 E-value=3.5e-07 Score=76.51 Aligned_cols=40 Identities=35% Similarity=0.483 Sum_probs=33.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--EEEECCEeC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--TVFLDGRDI 128 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--~I~i~g~~i 128 (298)
.+|++++|+|++||||||+.+.|++.++| .| .|.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666776544
No 213
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.12 E-value=2.4e-05 Score=68.30 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSG 119 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G 119 (298)
.++|+|++|+|||||++.|+|-..+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4799999999999999999997766555
No 214
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.12 E-value=4.8e-07 Score=87.05 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=45.6
Q ss_pred CCCCeEEEeCcCCCCCH-HHHHHHHHHHHHHHhcCCcEEEEEccCH-HHHHhhcCEEEE-EeCCEEEEeeCh
Q 022337 211 NEPEVLLLDEPTSALDP-ISTQNIEDVLVKLKKKHGMTIVMVSHSI-KQIQRIADVVCL-LVNGEIVEVLKP 279 (298)
Q Consensus 211 ~~p~illLDEPts~LD~-~~~~~~~~~l~~l~~~~g~tii~itHd~-~~~~~~~d~v~v-l~~G~i~~~g~~ 279 (298)
.+|++|++||+..-.+. ..+..++..+.++.+ .|+.+|++||+. ..+..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 48999999999877664 678889999988765 488999999973 322222222221 345666555544
No 215
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.08 E-value=4.1e-06 Score=68.68 Aligned_cols=31 Identities=45% Similarity=0.584 Sum_probs=25.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666665 999999999999999999874
No 216
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.03 E-value=1.3e-06 Score=74.14 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=39.6
Q ss_pred EEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--------CCCCccEEEECCEe
Q 022337 71 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--------WEPPSGTVFLDGRD 127 (298)
Q Consensus 71 ~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--------~~p~~G~I~i~g~~ 127 (298)
+.|++-..+++++|++.+++. ++++|++|+|||||++.+.+- ..++.+.+.++|..
T Consensus 7 ~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 7 WIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 456554578999999988885 689999999999999999872 23345667666643
No 217
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.02 E-value=1.9e-05 Score=74.00 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=46.8
Q ss_pred HHHHHHHHHc--CCCCeEEEeCcCCCCCHH-------------HHHHHHHH---HHHHHhcCCcEEEEEccCHH------
Q 022337 201 QRVALARTLA--NEPEVLLLDEPTSALDPI-------------STQNIEDV---LVKLKKKHGMTIVMVSHSIK------ 256 (298)
Q Consensus 201 QRv~iAral~--~~p~illLDEPts~LD~~-------------~~~~~~~~---l~~l~~~~g~tii~itHd~~------ 256 (298)
|-..+++.++ .+++++++|++++-.... ..+.+.+. |..++++.+.+||++.|-..
T Consensus 128 ~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 128 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC---------
T ss_pred HHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 3445566664 679999999999866321 11233334 44445667999999988532
Q ss_pred ----------HHHhhcCEEEEEeCCEEE
Q 022337 257 ----------QIQRIADVVCLLVNGEIV 274 (298)
Q Consensus 257 ----------~~~~~~d~v~vl~~G~i~ 274 (298)
.+..+||-++.++..+..
T Consensus 208 g~~~~~~gG~~l~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 208 GNPETTTGGNALKFYASVRLDIRRIGAV 235 (356)
T ss_dssp -----CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCCcceeeeccEEEEEEEeeee
Confidence 355678988888766543
No 218
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.02 E-value=2e-06 Score=75.56 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=33.0
Q ss_pred ceeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEEC
Q 022337 79 ILKGVNMEIP---KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLD 124 (298)
Q Consensus 79 vL~~isl~i~---~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~ 124 (298)
-|.++|+++. +|.+++|.|++||||||+++.|+..+.+ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 4677777776 9999999999999999999999999988 6677554
No 219
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.01 E-value=2.2e-06 Score=74.99 Aligned_cols=149 Identities=13% Similarity=0.076 Sum_probs=80.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCc-ccHHHHhHhCcccc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFE-GTVVDNIRYGPQLR 165 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~-~tv~eni~~~~~~~ 165 (298)
+.+|+.+++.||+||||||++.++..-.....| ....++++++.|.... .++.+++.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~----------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQND----------------RAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT----------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC----------------CCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 467999999999999999998876431110000 0134677888776543 37777776432110
Q ss_pred -CCCccHHHHHHHHHHcCCCchhh---cCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCC-CCCHHHHHHHHHHHHHH
Q 022337 166 -GKKLTENEVYKLLSLADLDSSFL---NKTGGEISVGQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKL 240 (298)
Q Consensus 166 -~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts-~LD~~~~~~~~~~l~~l 240 (298)
+..... ..... ... +..+--.+.|...+.. +..+.+.+++++||.-. ++|.......++.+...
T Consensus 137 ~~~~~g~--------~~~~~-~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 137 PGKSCGY--------SVRFE-SILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TTSSEEE--------EETTE-EECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred cCceEEE--------eechh-hccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 000000 00000 000 0011123556665553 34688999999999976 57776664444444443
Q ss_pred HhcCCcEEEEE-ccCHHHHHhhcC
Q 022337 241 KKKHGMTIVMV-SHSIKQIQRIAD 263 (298)
Q Consensus 241 ~~~~g~tii~i-tHd~~~~~~~~d 263 (298)
..+ -.+++++ |.+.+...++.+
T Consensus 206 ~~~-~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 206 YPE-VRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp CTT-SEEEEEECSSCCHHHHHHTT
T ss_pred CCC-CeEEEEecCCCHHHHHHHcC
Confidence 332 2344443 566555555544
No 220
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.99 E-value=6.6e-06 Score=74.83 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=26.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.+.++..+.|.||+|+|||||++.|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456788999999999999999999999865
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.98 E-value=6.5e-07 Score=77.06 Aligned_cols=44 Identities=32% Similarity=0.394 Sum_probs=38.2
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc--EEEECCEeC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG--TVFLDGRDI 128 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G--~I~i~g~~i 128 (298)
+.+++|.+++|+|++||||||+.+.|++.+.|+.| .+.++|..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999988888 888876443
No 222
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.97 E-value=1.3e-05 Score=76.97 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=97.9
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhcc-eEEEeCCCCCCcccH
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-TVFLDGRDITDLDVLSLRRK-VGMLFQIPALFEGTV 154 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~-ig~v~Q~~~l~~~tv 154 (298)
.+.|+.+.--+++|+++.|.|++|+|||||...++.-.....| .|.+..- +.+..++..+ ++.. ..+-...+
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl---E~~~~~l~~R~~~~~---~~i~~~~l 260 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL---EMPAAQLTLRMMCSE---ARIDMNRV 260 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES---SSCHHHHHHHHHHHH---TTCCTTTC
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC---CCCHHHHHHHHHHHH---cCCCHHHH
Confidence 3456666655899999999999999999999888765432222 2322111 1233222211 1000 00000000
Q ss_pred HHHhHhCccccCCC-ccHHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCH----
Q 022337 155 VDNIRYGPQLRGKK-LTENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDP---- 227 (298)
Q Consensus 155 ~eni~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~---- 227 (298)
+ -+ ... .+.+++.++++.+.-..-+.+. ...+|..+. .+.+|.+. .+|+++++|..+.-.+.
T Consensus 261 ~----~g----~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~ 329 (444)
T 2q6t_A 261 R----LG----QLTDRDFSRLVDVASRLSEAPIYIDD-TPDLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGK 329 (444)
T ss_dssp C----GG----GCCHHHHHHHHHHHHHHHTSCEEEEC-CTTCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC----
T ss_pred h----CC----CCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCC
Confidence 0 00 011 1123344444433211111222 345676654 44566665 57999999998764432
Q ss_pred ------HHHHHHHHHHHHHHhcCCcEEEEEccCH-------------H------HHHhhcCEEEEEe
Q 022337 228 ------ISTQNIEDVLVKLKKKHGMTIVMVSHSI-------------K------QIQRIADVVCLLV 269 (298)
Q Consensus 228 ------~~~~~~~~~l~~l~~~~g~tii~itHd~-------------~------~~~~~~d~v~vl~ 269 (298)
....++...|+.++++.+.+||+++|-- + .+...||.|++|.
T Consensus 330 ~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 330 SGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 1224677778888888899999999821 1 3567899999995
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.92 E-value=5.3e-05 Score=69.29 Aligned_cols=163 Identities=12% Similarity=0.106 Sum_probs=84.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCC-CCCccEEE-ECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhH-hCc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLW-EPPSGTVF-LDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIR-YGP 162 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~-i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~-~~~ 162 (298)
-+++|+++.|.||+|+|||||...++.-. .|. |..+ +.|....... ..++.|+.-+..+-+..+.+... ++
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~-~~~~~~~~~~~gg~~----~~~v~yi~~e~~~~~~~l~~~~~~~g- 167 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPE-FLFYDEEAVSKGEVA----QPKAVYIDTEGTFRPERIMQMAEHAG- 167 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGG-GEECCTTTSCTTTTS----SEEEEEEESSSCCCHHHHHHHHHHHT-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccc-cccccccccccCCCC----CceEEEEECCCCCCHHHHHHHHHHcC-
Confidence 47899999999999999999998887521 121 1100 0000000000 02344544433221222222211 11
Q ss_pred cccCCCccHHHHHHHHHHcCCCchhhcCCCCCCChhH-HHHHHHHHHHc---CCCCeEEEeCcCCCCC--------HHH-
Q 022337 163 QLRGKKLTENEVYKLLSLADLDSSFLNKTGGEISVGQ-AQRVALARTLA---NEPEVLLLDEPTSALD--------PIS- 229 (298)
Q Consensus 163 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kQRv~iAral~---~~p~illLDEPts~LD--------~~~- 229 (298)
.+ .+ ++++.+-+ . ...+.-+ .+-+..++.++ .+++++++|.-++-.. ...
T Consensus 168 ----~~--~~---~~~~~l~~----~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r 230 (322)
T 2i1q_A 168 ----ID--GQ---TVLDNTFV----A----RAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAER 230 (322)
T ss_dssp ----CC--HH---HHHHTEEE----E----ECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHH
T ss_pred ----CC--HH---HHhcCEEE----E----eCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHH
Confidence 11 11 11121111 0 0112222 23344444554 4689999998875431 111
Q ss_pred ---HHHHHHHHHHHHhcCCcEEEEEccCH----------------HHHHhhcCEEEEEeCC
Q 022337 230 ---TQNIEDVLVKLKKKHGMTIVMVSHSI----------------KQIQRIADVVCLLVNG 271 (298)
Q Consensus 230 ---~~~~~~~l~~l~~~~g~tii~itHd~----------------~~~~~~~d~v~vl~~G 271 (298)
..+++..|++++++.+.+||++.|-. ..+...+|.++.++..
T Consensus 231 ~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~~ 291 (322)
T 2i1q_A 231 QQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRKG 291 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEec
Confidence 24556667777777899999988732 1366789999999743
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.87 E-value=9.7e-06 Score=68.15 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=27.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC--------CCCCccEEEECCEe
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL--------WEPPSGTVFLDGRD 127 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl--------~~p~~G~I~i~g~~ 127 (298)
.+++++|++.++. .++++|++|+|||||++.+.+- ..++.+.+.++|..
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 4789999998887 6789999999999999999982 22335666666643
No 225
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.84 E-value=1.2e-05 Score=66.52 Aligned_cols=27 Identities=37% Similarity=0.453 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999865
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.84 E-value=1.7e-06 Score=79.11 Aligned_cols=61 Identities=21% Similarity=0.216 Sum_probs=49.8
Q ss_pred EEeEEEEeCCCCcceee-eeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCC
Q 022337 66 VRELRKESDDGAPILKG-VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITD 130 (298)
Q Consensus 66 ~~~l~~~y~~~~~vL~~-isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~ 130 (298)
.+++.+.|++. . ++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.|..+
T Consensus 77 ~~~l~~~~~~~-~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 77 YDELSNLFGGD-K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHTTCS-C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHhccc-c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 44566667432 2 56 888876 99999999999999999999999999888999998877654
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.83 E-value=3.5e-05 Score=65.22 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+.|.||+|+|||||++.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999997553
No 228
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.82 E-value=2e-05 Score=67.68 Aligned_cols=30 Identities=47% Similarity=0.626 Sum_probs=24.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 81 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 81 ~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3456666665 99999999999999999885
No 229
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=4.4e-07 Score=83.82 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCCcceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEe
Q 022337 75 DGAPILKGVNMEIPKGVI--MGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRD 127 (298)
Q Consensus 75 ~~~~vL~~isl~i~~Ge~--~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~ 127 (298)
+...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+.+.+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 345689999999999998 99999999999999999999987776654443333
No 230
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.77 E-value=1.9e-06 Score=80.82 Aligned_cols=57 Identities=23% Similarity=0.249 Sum_probs=37.2
Q ss_pred CeEEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 62 PKFRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 62 ~~l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
..+.+.|+++.|. ++.++++++|+| +|+|+||+|||||++.|.|...+..|.+...+
T Consensus 16 ~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3588889988884 567899999987 99999999999999999988666555544333
No 231
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.75 E-value=8.9e-06 Score=69.92 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998654
No 232
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.72 E-value=8.4e-06 Score=68.37 Aligned_cols=39 Identities=38% Similarity=0.596 Sum_probs=32.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDG 125 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g 125 (298)
..+|.+++|+|++||||||+.+.|++.+.+..|.+ .+++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45799999999999999999999999987777766 3443
No 233
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.71 E-value=1.8e-05 Score=72.23 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=30.9
Q ss_pred CCCCeEEEeCcCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 022337 211 NEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 211 ~~p~illLDEPts-~LD~~~~~~~~~~l~~l~~~~g~tii~itH 253 (298)
.+|.+|++||+-. .-+......+...+..+.+. +..+|++++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~-~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL-EKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-TCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 4699999999865 23447788888888887654 666666665
No 234
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.69 E-value=4.2e-05 Score=62.53 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999653
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.68 E-value=1.8e-05 Score=66.45 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=26.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 82 GVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 82 ~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++|++..+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999875
No 236
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=4.3e-06 Score=76.62 Aligned_cols=42 Identities=7% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 212 EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 212 ~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
++.++++|| ...+++.....+.+.+.+... ...+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~--~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG--VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT--TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC--CceEEEEeCchh
Confidence 678999999 678999999889988887643 455677776654
No 237
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.66 E-value=2.7e-05 Score=64.53 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 238
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.62 E-value=2.2e-05 Score=66.59 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 239
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.62 E-value=2.9e-05 Score=73.69 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=34.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcC-----------CCCCccEEEECCE
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRL-----------WEPPSGTVFLDGR 126 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl-----------~~p~~G~I~i~g~ 126 (298)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3567888999999999999999999998 6788898887663
No 240
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.61 E-value=9.5e-05 Score=65.85 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.++..+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998854
No 241
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.61 E-value=2.6e-05 Score=66.54 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=26.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998764
No 242
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.58 E-value=6e-05 Score=70.59 Aligned_cols=44 Identities=32% Similarity=0.525 Sum_probs=33.1
Q ss_pred EEEEeEEEEeCCCCcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 64 FRVRELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 64 l~~~~l~~~y~~~~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
..+..|+..-.. .+++..+++.+| +.+|+|||||||||++..|.
T Consensus 3 M~l~~L~l~nFr---~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK---SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc---cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445555543211 347788888886 89999999999999999986
No 243
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.55 E-value=1.1e-05 Score=68.61 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=32.4
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 4688999999866 7888888777777543 23677888888765
No 244
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.55 E-value=1.5e-05 Score=67.75 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
..+++|+|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999999865 5556665444
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.50 E-value=2e-05 Score=69.73 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=34.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
...++.++.|+|++||||||+.+.|+..+. .|.+.+++..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 566788999999999999999999998764 356778876553
No 246
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.48 E-value=3.4e-05 Score=64.99 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=29.5
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCC---ccEEEECCEe
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPP---SGTVFLDGRD 127 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~---~G~I~i~g~~ 127 (298)
.+++|+|+||||||||++.|.+.+++. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999876543 3777776544
No 247
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.48 E-value=0.0022 Score=60.15 Aligned_cols=140 Identities=21% Similarity=0.276 Sum_probs=77.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
-+++|+++.|.||.|+|||||...++.-.....+ .+.|+.-+..+-+ .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~-------------------~vlyi~~E~s~~~--~~---------- 118 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG-------------------TCAFIDAEHALDP--VY---------- 118 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC-------------------CEEEEESSCCCCH--HH----------
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCC-------------------eEEEEECCCChhH--HH----------
Confidence 3789999999999999999998777643211111 2344433321111 00
Q ss_pred CCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCC-----H--------HH
Q 022337 166 GKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALD-----P--------IS 229 (298)
Q Consensus 166 ~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD-----~--------~~ 229 (298)
++.+|++. .+.-..+. + + .|-+.+++.++ .+++++++|..++=.- - ..
T Consensus 119 ------------a~~~g~d~~~l~i~~~~--~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~ 182 (366)
T 1xp8_A 119 ------------ARALGVNTDELLVSQPD--N-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQ 182 (366)
T ss_dssp ------------HHHTTCCGGGCEEECCS--S-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHH
T ss_pred ------------HHHcCCCHHHceeecCC--c-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHH
Confidence 11122210 00000111 2 2 24455666665 4699999999987541 0 11
Q ss_pred HHHHHHHHHHH---HhcCCcEEEEEccCHHH----------------HHhhcCEEEEEeCCE
Q 022337 230 TQNIEDVLVKL---KKKHGMTIVMVSHSIKQ----------------IQRIADVVCLLVNGE 272 (298)
Q Consensus 230 ~~~~~~~l~~l---~~~~g~tii~itHd~~~----------------~~~~~d~v~vl~~G~ 272 (298)
.+.+.+.++++ +++.+.+||++.|-... +..+||-++.++.++
T Consensus 183 ~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 183 ARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 13344555444 57779999999885421 456788888887544
No 248
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.46 E-value=6.1e-05 Score=62.66 Aligned_cols=26 Identities=38% Similarity=0.565 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
No 249
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.45 E-value=1.8e-05 Score=74.03 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=33.7
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHhcCC
Q 022337 78 PILKGVNMEIPKGVI--MGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~--~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999999864
No 250
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=5.2e-05 Score=66.75 Aligned_cols=46 Identities=30% Similarity=0.565 Sum_probs=31.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 79 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 79 vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
.++++++.+++| +.|+||+|+|||||++.|++..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 455566666666 8899999999999999999976422 366666554
No 251
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.39 E-value=7.2e-05 Score=62.23 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999985
No 252
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.37 E-value=0.00018 Score=66.24 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 253
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.35 E-value=0.00064 Score=62.70 Aligned_cols=59 Identities=10% Similarity=0.229 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHH--c--CCCCeEEEeCcCCCCC-----H----------HHHHHHHHHHHH---HHhcCCcEEEEEccCH
Q 022337 198 GQAQRVALARTL--A--NEPEVLLLDEPTSALD-----P----------ISTQNIEDVLVK---LKKKHGMTIVMVSHSI 255 (298)
Q Consensus 198 GqkQRv~iAral--~--~~p~illLDEPts~LD-----~----------~~~~~~~~~l~~---l~~~~g~tii~itHd~ 255 (298)
++++.+.++.++ + .+|++++.|--++=.- - ...+.+-+.|++ ++++.+.++|++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 455546666665 3 3699999998766431 0 122334444443 5667799999999986
Q ss_pred H
Q 022337 256 K 256 (298)
Q Consensus 256 ~ 256 (298)
.
T Consensus 173 k 173 (333)
T 3io5_A 173 E 173 (333)
T ss_dssp -
T ss_pred e
Confidence 5
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.34 E-value=0.0001 Score=64.33 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
-.+|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999999996
No 255
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.32 E-value=0.0012 Score=64.12 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=46.5
Q ss_pred HHHHHHHHHc--CCCCeEEEeCcCCCCC-------H-HHHHHHHHHHHHHHhcCCcEEEEEccCH---------------
Q 022337 201 QRVALARTLA--NEPEVLLLDEPTSALD-------P-ISTQNIEDVLVKLKKKHGMTIVMVSHSI--------------- 255 (298)
Q Consensus 201 QRv~iAral~--~~p~illLDEPts~LD-------~-~~~~~~~~~l~~l~~~~g~tii~itHd~--------------- 255 (298)
+-++.++.+. .+|+++++|=-+ .+. . ....++...|++++++.+.+||+++|--
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 4444555554 479999999443 321 1 2334677778888888899999998843
Q ss_pred -------HHHHhhcCEEEEEe
Q 022337 256 -------KQIQRIADVVCLLV 269 (298)
Q Consensus 256 -------~~~~~~~d~v~vl~ 269 (298)
..+...||-|+.|+
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEE
Confidence 13567799999986
No 256
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.30 E-value=4e-05 Score=67.62 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHh---cCCCCCccEE
Q 022337 90 GVIMGIIGPSGSGKSTLLRALN---RLWEPPSGTV 121 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~---gl~~p~~G~I 121 (298)
.-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 3489999999999999999999 5544555555
No 257
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.28 E-value=6.8e-05 Score=70.49 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=45.7
Q ss_pred CCCCeEEEeCcCCCCC---HHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHH------------hhcCEEEEEeCC
Q 022337 211 NEPEVLLLDEPTSALD---PISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQ------------RIADVVCLLVNG 271 (298)
Q Consensus 211 ~~p~illLDEPts~LD---~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~------------~~~d~v~vl~~G 271 (298)
..|.++++||.=.-++ +.....+.+.+++..+ .|..++++||+++.+. ..|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3588999999988884 6677788888888755 5999999999997653 345666666543
No 258
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.26 E-value=0.0016 Score=62.50 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=28.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
+-|+.+.--+.+|+++.|.|++|+|||||.--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34555443589999999999999999999877765
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.25 E-value=0.00014 Score=59.26 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 260
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.23 E-value=0.0015 Score=71.87 Aligned_cols=139 Identities=19% Similarity=0.267 Sum_probs=80.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE-EECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCcccc
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV-FLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLR 165 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I-~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~ 165 (298)
+++|+++.|.||+|+|||||+..++.......|.+ +++++.... .+ +
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~----ql------------------~---------- 776 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD----PI------------------Y---------- 776 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC----HH------------------H----------
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH----HH------------------H----------
Confidence 89999999999999999999999987554333333 223322100 00 0
Q ss_pred CCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCC-H------------HH
Q 022337 166 GKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALD-P------------IS 229 (298)
Q Consensus 166 ~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD-~------------~~ 229 (298)
.+.+|++. .+.-..+. +. .+-...++.++ .+|+++++|+..+-.. . ..
T Consensus 777 ------------A~~lGvd~~~L~i~~~~--~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q 840 (1706)
T 3cmw_A 777 ------------ARKLGVDIDNLLCSQPD--TG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 840 (1706)
T ss_dssp ------------HHHTTCCGGGCEEECCS--SH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHH
T ss_pred ------------HHHcCCChhheEEecCC--cH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHH
Confidence 11111110 00000011 11 23344444443 5799999999987552 1 12
Q ss_pred HHHHHHHHHH---HHhcCCcEEEEEccCH----------------HHHHhhcCEEEEEeCCEE
Q 022337 230 TQNIEDVLVK---LKKKHGMTIVMVSHSI----------------KQIQRIADVVCLLVNGEI 273 (298)
Q Consensus 230 ~~~~~~~l~~---l~~~~g~tii~itHd~----------------~~~~~~~d~v~vl~~G~i 273 (298)
.+++.+.+++ ++++.|.+||+++|-. ..+...||-++.++.++.
T Consensus 841 ~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~~ 903 (1706)
T 3cmw_A 841 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 903 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEeccc
Confidence 2345445544 4666799999998821 246778899999965543
No 261
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.23 E-value=0.00019 Score=59.23 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998664
No 262
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.20 E-value=0.0015 Score=56.34 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=43.5
Q ss_pred cCCCCeEEEeCcCC----CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH----------HHHhhcCEEEEEe
Q 022337 210 ANEPEVLLLDEPTS----ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK----------QIQRIADVVCLLV 269 (298)
Q Consensus 210 ~~~p~illLDEPts----~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~----------~~~~~~d~v~vl~ 269 (298)
-.+|+++++|--+. .-|.....++...|++++++.|.++++++|-.. .+...||-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45789999996432 124556677888888888888999999998532 2345789988875
No 263
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.18 E-value=0.00039 Score=57.90 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=26.8
Q ss_pred EEEEEcCCCccHHHHHHHHh-cC----CCCCcc----EEEECCEe
Q 022337 92 IMGIIGPSGSGKSTLLRALN-RL----WEPPSG----TVFLDGRD 127 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~-gl----~~p~~G----~I~i~g~~ 127 (298)
.++|+|++|+|||||++.+. +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 48899999999999996554 44 556766 56666654
No 264
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.17 E-value=5.3e-05 Score=64.43 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=24.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
+++|.|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998876443333
No 265
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.16 E-value=0.00019 Score=60.24 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999843
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.14 E-value=0.00025 Score=58.88 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998744
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.11 E-value=0.00021 Score=60.02 Aligned_cols=32 Identities=44% Similarity=0.567 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCE
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR 126 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~ 126 (298)
..+++|+|++||||||+.+.|+.. |-..++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEccc
Confidence 357999999999999999999985 66666543
No 268
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.10 E-value=0.0012 Score=52.95 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 4556688999999999999999987654
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.09 E-value=0.00025 Score=57.49 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 022337 92 IMGIIGPSGSGKSTLLRAL 110 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l 110 (298)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 270
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.09 E-value=0.00026 Score=60.61 Aligned_cols=32 Identities=38% Similarity=0.534 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
++-+++|.|++||||||+.+.|+.+ |...++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999983 4455543
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.07 E-value=0.00027 Score=58.89 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999998643
No 272
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.07 E-value=0.00043 Score=64.89 Aligned_cols=36 Identities=42% Similarity=0.639 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc-----------CCCCCccEEEECC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNR-----------LWEPPSGTVFLDG 125 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~g-----------l~~p~~G~I~i~g 125 (298)
|-.++|+|.+|+|||||++.|+| -..|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4567888888766
No 273
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.06 E-value=0.0019 Score=59.88 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+...+.|.||.|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356678999999999999999998754
No 274
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.02 E-value=0.00077 Score=62.26 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 86 EIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 86 ~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
-+++|..+.|.||.|+|||||...++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 578888999999999999999999875
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.02 E-value=0.00021 Score=59.22 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++.++.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999843
No 276
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.01 E-value=0.00029 Score=62.46 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|+||||||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 277
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.01 E-value=0.00037 Score=57.83 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998643
No 278
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.00 E-value=0.00032 Score=59.63 Aligned_cols=21 Identities=57% Similarity=0.765 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
+.|+||||||||||++.|..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998754
No 279
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.99 E-value=0.00032 Score=58.11 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.+-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999986
No 280
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.98 E-value=0.00045 Score=58.11 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 281
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.97 E-value=0.00071 Score=59.15 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=37.9
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC----------HHHHHhhcCEEEEE
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS----------IKQIQRIADVVCLL 268 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd----------~~~~~~~~d~v~vl 268 (298)
.+|+++++||.-. |+.. +.+.+..+++. |.+||++-|+ ...+..+||+|.-|
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 3589999999964 6643 44455666554 8999999992 45566799999875
No 282
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.96 E-value=0.0049 Score=59.21 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
++.+++++|++|+||||++..|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999877644334544
No 283
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.95 E-value=0.00039 Score=57.42 Aligned_cols=23 Identities=52% Similarity=0.547 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998754
No 284
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.93 E-value=0.0004 Score=62.79 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=28.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
..|.++.|.||+||||||+.+.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 4567899999999999999999987542 35677765
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.92 E-value=0.00046 Score=56.61 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.90 E-value=0.00049 Score=57.38 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
No 287
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.89 E-value=0.00053 Score=57.78 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999876543
No 288
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.88 E-value=0.00055 Score=57.90 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.+|-+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 289
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.86 E-value=0.00026 Score=68.04 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHcCCCCeEEEeCcCC-CCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHH
Q 022337 198 GQAQRVALARTLANEPEVLLLDEPTS-ALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQI 258 (298)
Q Consensus 198 GqkQRv~iAral~~~p~illLDEPts-~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~ 258 (298)
.|.+....+...+.+++++|+..... ++... ...+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~----~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR----TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT----CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH----cCCCEEEEEECccch
Confidence 47777778888888899877776654 45444 4455555543 377888888877654
No 290
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.84 E-value=0.00062 Score=57.60 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++|-+++|.|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999854
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.82 E-value=0.00056 Score=60.86 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=38.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHHHHHhhcCEEEE
Q 022337 221 PTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIKQIQRIADVVCL 267 (298)
Q Consensus 221 Pts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~~~~~~~d~v~v 267 (298)
|||+.+..+..++++.+.+..++...+..+.+|..+.+...++++.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~ 190 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISE 190 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHH
Confidence 99999999999999999888765555666778888888888877643
No 292
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00065 Score=56.33 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 293
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.80 E-value=0.0014 Score=63.56 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=58.3
Q ss_pred cCCCCCCChhHHHHHHHHHHHc--C---------------CCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEE
Q 022337 189 NKTGGEISVGQAQRVALARTLA--N---------------EPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMV 251 (298)
Q Consensus 189 ~~~~~~LSgGqkQRv~iAral~--~---------------~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~i 251 (298)
.+..+.+||||+|-..+|.+-+ + .-.++++||+ +-+|....+..+++++++ |.-+|++
T Consensus 374 s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliia 448 (483)
T 3euj_A 374 RAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIA 448 (483)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEE
T ss_pred ecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEE
Confidence 3446789999999655444332 2 2257999999 999999999999999977 7889999
Q ss_pred ccCHHHHHhhcCEEEEEe
Q 022337 252 SHSIKQIQRIADVVCLLV 269 (298)
Q Consensus 252 tHd~~~~~~~~d~v~vl~ 269 (298)
|=+ .+..++|.++.+-
T Consensus 449 tP~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 449 APE--NISPERGTTYKLV 464 (483)
T ss_dssp ESS--SCCCSSSEEEECC
T ss_pred Ccc--hhhhccCceEEEE
Confidence 987 6677889988764
No 294
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.80 E-value=0.00041 Score=62.31 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
..+.|.||+|+||||+.+.|++.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5899999999999999999999887766643
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.79 E-value=0.00064 Score=56.31 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.|.|++||||||+.+.|+.-+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998755
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.77 E-value=0.00038 Score=58.36 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.+++|+|++|||||||+..|++.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987654
No 297
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.76 E-value=0.00066 Score=57.15 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 298
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.74 E-value=0.00056 Score=56.48 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=18.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999998543
No 299
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.74 E-value=0.0072 Score=57.32 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
=.+..++.|+|++||||||+.+.|+.-
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999999999863
No 300
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.73 E-value=0.00029 Score=58.93 Aligned_cols=28 Identities=39% Similarity=0.462 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+.+-+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567799999999999999999998754
No 301
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.72 E-value=0.00079 Score=56.13 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 302
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.72 E-value=0.0011 Score=60.87 Aligned_cols=47 Identities=30% Similarity=0.261 Sum_probs=36.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc----CCCCCccEEEECC
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR----LWEPPSGTVFLDG 125 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g----l~~p~~G~I~i~g 125 (298)
..+++..+.+ .|.-++|.|+||+|||||...+.+ ++..|...|...+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 4778888888 788999999999999999999987 4444555554433
No 303
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.71 E-value=0.0023 Score=51.90 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+.-.++++|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4557899999999999999999874
No 304
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.63 E-value=0.0011 Score=56.68 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|-++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998644
No 305
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.63 E-value=0.00091 Score=56.22 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 306
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.63 E-value=0.0085 Score=66.08 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=82.4
Q ss_pred CcceeeeeEE---EeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCccc
Q 022337 77 APILKGVNME---IPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGT 153 (298)
Q Consensus 77 ~~vL~~isl~---i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~t 153 (298)
..-|+.+ +. +++|.++.|.||+|+|||||.-.++.-.....+ .+.|+.-+..+-+
T Consensus 368 i~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~-------------------~vlyis~E~s~~~-- 425 (1706)
T 3cmw_A 368 SLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-------------------TCAFIDAEHALDP-- 425 (1706)
T ss_dssp CHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC-------------------CEEEECTTSCCCH--
T ss_pred cHHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-------------------CeEEEEccCchHH--
Confidence 3455554 33 889999999999999999998777643221111 2333333222111
Q ss_pred HHHHhHhCccccCCCccHHHHHHHHHHcCCCc-hhhcCCCCCCChhHHHHHHHHHHHc--CCCCeEEEeCcCCCCCHH--
Q 022337 154 VVDNIRYGPQLRGKKLTENEVYKLLSLADLDS-SFLNKTGGEISVGQAQRVALARTLA--NEPEVLLLDEPTSALDPI-- 228 (298)
Q Consensus 154 v~eni~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkQRv~iAral~--~~p~illLDEPts~LD~~-- 228 (298)
++ ++.+|++. .+.-..+. +..| -+.+++.++ .+|+++++|..++=....
T Consensus 426 ~~----------------------a~~lGvd~~~L~i~~~~--~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~ 479 (1706)
T 3cmw_A 426 IY----------------------ARKLGVDIDNLLCSQPD--TGEQ--ALEICDALARSGAVDVIVVDSVAALTPKAEI 479 (1706)
T ss_dssp HH----------------------HHHTTCCGGGCEEECCS--SHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHHHH
T ss_pred HH----------------------HHHcCCCHHHeEEcCCC--CHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccccc
Confidence 00 11122210 00000111 2222 234455554 579999999998766411
Q ss_pred -----------HHHHHHHHHHHH---HhcCCcEEEEEccCH----------------HHHHhhcCEEEEEeCCE
Q 022337 229 -----------STQNIEDVLVKL---KKKHGMTIVMVSHSI----------------KQIQRIADVVCLLVNGE 272 (298)
Q Consensus 229 -----------~~~~~~~~l~~l---~~~~g~tii~itHd~----------------~~~~~~~d~v~vl~~G~ 272 (298)
..+.+.+.++++ +++.+.++|+++|-. ..++.+||-++.+...+
T Consensus 480 e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 480 EGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp HSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 123344444444 466799999998842 24667899988876544
No 307
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.00097 Score=55.22 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=21.6
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
=.++++|++|||||||++.+.+-.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 308
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.61 E-value=0.0019 Score=51.81 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999873
No 309
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.59 E-value=0.0032 Score=70.26 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=47.8
Q ss_pred HHHHHHHHc--CCCCeEEEeCcCCCCC-H------------HHHHHHHHHHHHH---HhcCCcEEEEEccCHH-------
Q 022337 202 RVALARTLA--NEPEVLLLDEPTSALD-P------------ISTQNIEDVLVKL---KKKHGMTIVMVSHSIK------- 256 (298)
Q Consensus 202 Rv~iAral~--~~p~illLDEPts~LD-~------------~~~~~~~~~l~~l---~~~~g~tii~itHd~~------- 256 (298)
-+.+++.++ .+|++++.|.-++-.. + ...+.+.+.++++ +++.+.+||+++|-..
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 445566554 5799999999887552 1 1223455555555 5778999999988421
Q ss_pred ---------HHHhhcCEEEEEeCCE
Q 022337 257 ---------QIQRIADVVCLLVNGE 272 (298)
Q Consensus 257 ---------~~~~~~d~v~vl~~G~ 272 (298)
.++.+||-++.|+..+
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEecc
Confidence 3677899999887654
No 310
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.58 E-value=0.0011 Score=57.03 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++.+++|.|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998643
No 311
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.57 E-value=0.001 Score=53.31 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 312
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.57 E-value=0.00095 Score=53.58 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.|-.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998754
No 313
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999854
No 314
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.55 E-value=0.0012 Score=56.17 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|.|+.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 315
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.54 E-value=0.0012 Score=54.63 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
No 316
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.54 E-value=0.0011 Score=54.21 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
No 317
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.52 E-value=0.0013 Score=59.00 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 318
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.52 E-value=0.0011 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 319
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.51 E-value=0.0015 Score=54.97 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35589999999999999999998643
No 320
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.51 E-value=0.0011 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+-++.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998644
No 321
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.51 E-value=0.0012 Score=52.65 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998854
No 322
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.51 E-value=0.0013 Score=52.89 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998754
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.50 E-value=0.0014 Score=53.23 Aligned_cols=22 Identities=41% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 324
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.50 E-value=0.0012 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999753
No 325
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.49 E-value=0.0045 Score=60.14 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 87 IPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 87 i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.+..-+.|.||+|+|||+|.+.|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455568999999999999999998743
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.49 E-value=0.0012 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 327
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.48 E-value=0.0014 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 328
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.48 E-value=0.0013 Score=53.44 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.48 E-value=0.0015 Score=55.05 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+..+++|.|+.||||||+.+.|+.-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998543
No 330
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.48 E-value=0.0013 Score=52.81 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.47 E-value=0.0016 Score=53.19 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999763
No 332
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.47 E-value=0.0014 Score=55.73 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+||.||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
No 333
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.46 E-value=0.0013 Score=52.81 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
No 334
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.45 E-value=0.0013 Score=52.62 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
No 335
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.45 E-value=0.0017 Score=57.66 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 336
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.44 E-value=0.0014 Score=52.49 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 337
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.44 E-value=0.0013 Score=61.70 Aligned_cols=21 Identities=52% Similarity=0.803 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHhcC
Q 022337 93 MGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~gl 113 (298)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
No 338
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.44 E-value=0.0014 Score=53.25 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999988743
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.43 E-value=0.0013 Score=54.46 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999764
No 340
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.43 E-value=0.0013 Score=52.79 Aligned_cols=23 Identities=39% Similarity=0.380 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 341
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.43 E-value=0.0014 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
No 342
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.42 E-value=0.0001 Score=76.02 Aligned_cols=45 Identities=18% Similarity=0.370 Sum_probs=36.5
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeCC
Q 022337 83 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT 129 (298)
Q Consensus 83 isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i~ 129 (298)
.++.+.+++.+.|+||+|+|||||.|+|++.+. .+-+.+++.++.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 466788999999999999999999999999874 345666665553
No 343
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.42 E-value=0.0015 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl 113 (298)
=.++++|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999975
No 344
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.41 E-value=0.0017 Score=57.14 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|++|+|||||++.|.|--
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999854
No 345
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.40 E-value=0.0014 Score=53.17 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 346
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.40 E-value=0.0015 Score=53.67 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.38 E-value=0.0018 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
No 348
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.38 E-value=0.0015 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999999854
No 349
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.37 E-value=0.0018 Score=55.04 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.-+++|+|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999999874
No 350
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0032 Score=53.22 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988753
No 351
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.36 E-value=0.001 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
.=.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 352
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.36 E-value=0.0018 Score=56.91 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998743
No 353
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.33 E-value=0.0017 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 354
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.33 E-value=0.0018 Score=53.32 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.++|+|+.|+|||||++.+.|-..+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 4789999999999999999987643
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.33 E-value=0.0017 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998643
No 356
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.33 E-value=0.0017 Score=53.45 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999863
No 357
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.31 E-value=0.0018 Score=53.70 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 358
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.31 E-value=0.002 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 359
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.30 E-value=0.0018 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
No 360
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.30 E-value=0.0018 Score=52.02 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 361
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.29 E-value=0.002 Score=58.51 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 362
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.27 E-value=0.0019 Score=51.61 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHhc
Q 022337 93 MGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 93 ~~iiG~nGsGKSTLlk~l~g 112 (298)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999975
No 363
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.26 E-value=0.0024 Score=56.00 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++-+++|.||.||||||+.+.|+.-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999753
No 364
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.25 E-value=0.0019 Score=52.31 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 365
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.25 E-value=0.0023 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+++|.|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
No 366
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0021 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 367
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.23 E-value=0.0011 Score=59.97 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++-+++|.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 368
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.23 E-value=0.0021 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4889999999999999999864
No 369
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.23 E-value=0.0022 Score=57.62 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCccHHHHHHHHhc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 370
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.22 E-value=0.0021 Score=51.98 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 371
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.22 E-value=0.0019 Score=57.53 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38899999999999999988753
No 372
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.22 E-value=0.0023 Score=58.17 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+++|+|+.|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999985
No 373
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.21 E-value=0.0021 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 374
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.18 E-value=0.0023 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 375
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.18 E-value=0.0031 Score=51.30 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
No 376
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.15 E-value=0.0022 Score=52.46 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 377
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.15 E-value=0.0018 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.5
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-.++|+|+.|+|||||++.|.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 378
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.14 E-value=0.0027 Score=55.68 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 379
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.13 E-value=0.04 Score=61.68 Aligned_cols=36 Identities=36% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCcceeeee--EEEeCCcEEEEEcCCCccHHHHHHHHh
Q 022337 76 GAPILKGVN--MEIPKGVIMGIIGPSGSGKSTLLRALN 111 (298)
Q Consensus 76 ~~~vL~~is--l~i~~Ge~~~iiG~nGsGKSTLlk~l~ 111 (298)
+.+.|+++. .-+++|+.+.|.||+|||||||...+.
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 456788887 579999999999999999999999887
No 380
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.13 E-value=0.0025 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 381
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.13 E-value=0.0027 Score=53.75 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999865
No 382
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.12 E-value=0.0027 Score=52.15 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998743
No 383
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.12 E-value=0.0026 Score=53.14 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 384
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.10 E-value=0.0025 Score=52.79 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++|+|+.|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 589999999999999999987
No 385
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.10 E-value=0.0029 Score=54.16 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+|-++.|+|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
No 386
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.10 E-value=0.005 Score=50.16 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999984
No 387
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.10 E-value=0.0025 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 388
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.10 E-value=0.0026 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
No 389
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.09 E-value=0.0027 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998743
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.09 E-value=0.0029 Score=53.93 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
No 391
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.09 E-value=0.0011 Score=64.06 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=35.0
Q ss_pred CcceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEE
Q 022337 77 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFL 123 (298)
Q Consensus 77 ~~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i 123 (298)
..+++.+ +.+-+|+..+|+|++|+|||||++.|++-.....|.|.+
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 3466665 678899999999999999999999998765443344433
No 392
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.08 E-value=0.0027 Score=51.86 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999864
No 393
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0026 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998643
No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.06 E-value=0.0028 Score=51.64 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999875
No 395
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.05 E-value=0.0032 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0029 Score=53.66 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-.++|+|+.|||||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998754
No 397
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.03 E-value=0.0036 Score=54.08 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.+|-++.|-|+.||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876643
No 398
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.03 E-value=0.0029 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999874
No 399
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.02 E-value=0.0034 Score=56.22 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 400
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.01 E-value=0.0031 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999863
No 401
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.00 E-value=0.0029 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58899999999999999999754
No 402
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.00 E-value=0.0039 Score=55.57 Aligned_cols=30 Identities=27% Similarity=0.404 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCCccE
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPPSGT 120 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~ 120 (298)
-.++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 479999999999999999999976654443
No 403
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.00 E-value=0.0032 Score=52.76 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 404
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.99 E-value=0.0031 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999863
No 405
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.98 E-value=0.0025 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 406
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.98 E-value=0.0033 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.003 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 408
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.97 E-value=0.0033 Score=52.10 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998743
No 409
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.97 E-value=0.0036 Score=55.91 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.97 E-value=0.0044 Score=53.60 Aligned_cols=26 Identities=38% Similarity=0.645 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+-.+.|+|+.||||||+.+.|+.-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998654
No 411
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.96 E-value=0.0038 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.++|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
No 412
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.96 E-value=0.004 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987664
No 413
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.96 E-value=0.0038 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccHHHHHHHHhcC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl 113 (298)
=.++++|+.|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999953
No 414
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.95 E-value=0.0036 Score=56.32 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999975
No 415
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.95 E-value=0.0039 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.++++|++|+|||||++.+.+-..+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4889999999999999999986543
No 416
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.94 E-value=0.0038 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999884
No 417
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.94 E-value=0.003 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 418
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.93 E-value=0.0039 Score=53.47 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 419
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.93 E-value=0.0035 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999998753
No 420
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.92 E-value=0.0036 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 421
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.92 E-value=0.0038 Score=57.91 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=22.3
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998664
No 422
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.92 E-value=0.0034 Score=54.92 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.+|-++.|-|+.||||||+.+.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987664
No 423
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.91 E-value=0.0041 Score=50.57 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=23.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999987653
No 424
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.91 E-value=0.0033 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
No 425
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.91 E-value=0.0036 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 426
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.91 E-value=0.0032 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999974
No 427
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0036 Score=51.47 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999874
No 428
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.90 E-value=0.0046 Score=53.43 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
No 429
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.89 E-value=0.0039 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
No 430
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.89 E-value=0.0036 Score=52.41 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 431
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.89 E-value=0.0037 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998753
No 432
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.88 E-value=0.0042 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 433
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.88 E-value=0.028 Score=50.62 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=31.6
Q ss_pred CCCeEEEeCcCCCCC-HHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 212 EPEVLLLDEPTSALD-PISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 212 ~p~illLDEPts~LD-~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
+++++++||.-. |. ......+...+.+... +..+|++|++..
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~--~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSS--NCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGG--GCEEEEEESSGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCC--CcEEEEEeCCcc
Confidence 789999999854 55 6677777777776643 567888888765
No 434
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.87 E-value=0.0043 Score=51.63 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 435
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.85 E-value=0.0053 Score=56.89 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.++.|+||+|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999866
No 436
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.84 E-value=0.0042 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4889999999999999999873
No 437
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.0038 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 438
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.81 E-value=0.0054 Score=53.20 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
.+|.++.+-|+.||||||+.+.|...+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999988765 4443
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.79 E-value=0.004 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 440
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.78 E-value=0.0051 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
+|-+++|.|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 366899999999999999999997663
No 441
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.78 E-value=0.0045 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999888753
No 442
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.74 E-value=0.0055 Score=56.34 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.+++|+||+|||||||.+.|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 443
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.74 E-value=0.003 Score=51.64 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=9.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
No 444
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.74 E-value=0.0058 Score=53.31 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.+|-++.+.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
No 445
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.73 E-value=0.0052 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999843
No 446
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.73 E-value=0.009 Score=50.31 Aligned_cols=34 Identities=26% Similarity=0.169 Sum_probs=26.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhc
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~g 112 (298)
..++..-+.+ .|.-+.|.|+||+|||||...+..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455555554 677899999999999999987765
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.72 E-value=0.0044 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.=.++++|+.|+|||||++.+.+-
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 335899999999999999999753
No 448
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.72 E-value=0.0071 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 449
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.71 E-value=0.0045 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 450
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.70 E-value=0.0028 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
No 451
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.70 E-value=0.0053 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 452
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.70 E-value=0.0049 Score=54.87 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.++|+|+.|+|||||++.|.|-..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999998653
No 453
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.69 E-value=0.0015 Score=57.45 Aligned_cols=32 Identities=34% Similarity=0.683 Sum_probs=25.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 80 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 80 L~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
+.+.++..++| +.|.||+|+|||||++.++..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34445555666 779999999999999999974
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.69 E-value=0.0055 Score=56.44 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..+.|+||+|||||||.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999999865
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.68 E-value=0.0075 Score=51.89 Aligned_cols=36 Identities=33% Similarity=0.338 Sum_probs=29.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 78 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 78 ~vL~~isl~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..++..-+.+ .|..+.|+||+|||||||..-|+.-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4566666665 67889999999999999999998653
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.68 E-value=0.0042 Score=54.81 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998763
No 457
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0049 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999864
No 458
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.62 E-value=0.0055 Score=52.14 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++-+++-.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 68999999999999999888654
No 459
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.61 E-value=0.012 Score=60.78 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.5
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCCCCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLWEPP 117 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~~p~ 117 (298)
..+.|.||+|+|||++.+.|+..+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~ 615 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT 615 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 478899999999999999999877543
No 460
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.58 E-value=0.0068 Score=52.67 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
...-+.|.||.|+|||||.+.++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999998743
No 461
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.55 E-value=0.0015 Score=62.51 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=32.5
Q ss_pred EEEeCC--cEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 85 MEIPKG--VIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 85 l~i~~G--e~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
|.+.++ .+++++|++|+||||+...|++.+.....+|.+-.-|.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 444434 58999999999999999999998765444566544443
No 462
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.54 E-value=0.0075 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.53 E-value=0.0058 Score=53.04 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=24.8
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 85 MEIPKGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 85 l~i~~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-..++..++.|+||.||||+|..+.|+--+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344667789999999999999999998644
No 464
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.47 E-value=0.0029 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=4.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998864
No 465
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.47 E-value=0.0044 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.7
Q ss_pred cEEEEEcCCCccHHHHHHHHhc
Q 022337 91 VIMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~g 112 (298)
=.++++|+.|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999965
No 466
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.46 E-value=0.0064 Score=51.02 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999864
No 467
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.42 E-value=0.0071 Score=51.54 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 468
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.40 E-value=0.0068 Score=50.99 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988874
No 469
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.33 E-value=0.0077 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.29 E-value=0.01 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
..+++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999998764
No 471
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.27 E-value=0.0079 Score=50.52 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999853
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.10 E-value=0.012 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWE 115 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~ 115 (298)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998764
No 473
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.10 E-value=0.013 Score=49.12 Aligned_cols=53 Identities=17% Similarity=0.322 Sum_probs=36.6
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH----------HHHhhcCEEEEEe
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK----------QIQRIADVVCLLV 269 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~----------~~~~~~d~v~vl~ 269 (298)
.+++++++||.-. +++. +.+.|+++.++ |..|++..++.+ .+..+||.+.-|+
T Consensus 75 ~~~dvviIDE~Q~-~~~~----~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNPS----LFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCHH----HHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999754 5543 55566666655 888988888443 2345699997764
No 474
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.08 E-value=0.0022 Score=56.16 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=26.8
Q ss_pred HcCCCCeEEEeCcCCC-CCHHHHHHHHHHHHHHHhcCCcEEEEEcc
Q 022337 209 LANEPEVLLLDEPTSA-LDPISTQNIEDVLVKLKKKHGMTIVMVSH 253 (298)
Q Consensus 209 l~~~p~illLDEPts~-LD~~~~~~~~~~l~~l~~~~g~tii~itH 253 (298)
+..+|+++|+||+-.- .+.......++.+..... .|..++.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence 3358999999997642 332222333333443433 3888998888
No 475
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.06 E-value=0.012 Score=49.02 Aligned_cols=43 Identities=12% Similarity=0.246 Sum_probs=30.8
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccCHH
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHSIK 256 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd~~ 256 (298)
.++.++++||.- .+++.....+.+.+.+.. .+..+|++|+...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~--~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYS--KSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcC--CCCeEEEEeCChh
Confidence 368899999964 477777777887777642 2566777777653
No 476
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.06 E-value=0.012 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++.|+||.||||+|..+.|+.-+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999998644
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.98 E-value=0.013 Score=55.69 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.1
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.+++|.||+|||||||.+.|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 478
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.98 E-value=0.016 Score=52.05 Aligned_cols=30 Identities=33% Similarity=0.387 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCCCCCcc
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLWEPPSG 119 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G 119 (298)
+-.++++|.+|+|||||++.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 346899999999999999999987644333
No 479
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.97 E-value=0.014 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999888765
No 480
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.92 E-value=0.011 Score=54.82 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=22.8
Q ss_pred CCCChhHHHHHHHHHHH---cC--CCCeEEEeCcC
Q 022337 193 GEISVGQAQRVALARTL---AN--EPEVLLLDEPT 222 (298)
Q Consensus 193 ~~LSgGqkQRv~iAral---~~--~p~illLDEPt 222 (298)
..+|+||+||.+++|+| +. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 46999999999999999 76 89999999997
No 481
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.91 E-value=0.0096 Score=50.47 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCCeEEEeCcCC-----CCCHHHHHHHHHHHHHHH
Q 022337 201 QRVALARTLANEPEVLLLDEPTS-----ALDPISTQNIEDVLVKLK 241 (298)
Q Consensus 201 QRv~iAral~~~p~illLDEPts-----~LD~~~~~~~~~~l~~l~ 241 (298)
=.-.|++.+..+|.+...++|+. .+|+..++.+...+++..
T Consensus 165 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
T 3gj0_A 165 PFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ 210 (221)
T ss_dssp HHHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence 34478888899998888887766 788888888888777643
No 482
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.89 E-value=0.046 Score=55.62 Aligned_cols=112 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC-CCCccEEEECCEeCCCCCHHHHhcceEEEeCCCCCCcccHHHHhHhCccccCCCcc
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW-EPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVVDNIRYGPQLRGKKLT 170 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~-~p~~G~I~i~g~~i~~~~~~~~~~~ig~v~Q~~~l~~~tv~eni~~~~~~~~~~~~ 170 (298)
.+.|.||+|+|||+|.+.|+..+ ....--|.++.-++.......
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----------------------------------- 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----------------------------------- 567 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----------------------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc-----------------------------------
Q ss_pred HHHHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEEeCcCCCCCHHHHHHHHHHHHHHH---------
Q 022337 171 ENEVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLK--------- 241 (298)
Q Consensus 171 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illLDEPts~LD~~~~~~~~~~l~~l~--------- 241 (298)
...+.+--+++ .+.+|++||. ..+++.....+++.+.+-.
T Consensus 568 ---------------------~~~l~~~~~~~---------~~~vl~lDEi-~~~~~~~~~~Ll~~le~g~~~~~~g~~~ 616 (758)
T 3pxi_A 568 ---------------------GGQLTEKVRRK---------PYSVVLLDAI-EKAHPDVFNILLQVLEDGRLTDSKGRTV 616 (758)
T ss_dssp ------------------------CHHHHHHC---------SSSEEEEECG-GGSCHHHHHHHHHHHHHSBCC-----CC
T ss_pred ---------------------cchhhHHHHhC---------CCeEEEEeCc-cccCHHHHHHHHHHhccCeEEcCCCCEe
Q ss_pred hcCCcEEEEEcc----------------CHHHHHhhcCEEEEEe
Q 022337 242 KKHGMTIVMVSH----------------SIKQIQRIADVVCLLV 269 (298)
Q Consensus 242 ~~~g~tii~itH----------------d~~~~~~~~d~v~vl~ 269 (298)
...+..+|++|+ -...+..-+|.++.+.
T Consensus 617 ~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~ 660 (758)
T 3pxi_A 617 DFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFH 660 (758)
T ss_dssp BCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC
T ss_pred ccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecC
No 483
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.88 E-value=0.013 Score=53.74 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=29.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDG 125 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g 125 (298)
.+|..+.|.||.|+|||||.+.++..+......+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 35678999999999999999999987764444455544
No 484
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.78 E-value=0.0052 Score=51.43 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 022337 92 IMGIIGPSGSGKSTLLRALNR 112 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~g 112 (298)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988865
No 485
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.73 E-value=0.011 Score=54.69 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999998765
No 486
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.73 E-value=0.013 Score=55.72 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.++|+|++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 487
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.73 E-value=0.019 Score=52.05 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHhcCC
Q 022337 91 VIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 91 e~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
-.++|+|+.|+|||||++.+.+-.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999987753
No 488
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.72 E-value=0.0081 Score=57.67 Aligned_cols=41 Identities=29% Similarity=0.465 Sum_probs=30.2
Q ss_pred eeeeEEEeCCcE--EEEEcCCCccHHHHHHHHhcCCCCCccEE
Q 022337 81 KGVNMEIPKGVI--MGIIGPSGSGKSTLLRALNRLWEPPSGTV 121 (298)
Q Consensus 81 ~~isl~i~~Ge~--~~iiG~nGsGKSTLlk~l~gl~~p~~G~I 121 (298)
+.+.-.+..|.+ +.|.||+|+|||||.+.|+......-..+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 344444555554 88999999999999999999876544443
No 489
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.69 E-value=0.015 Score=54.98 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCchhhcCCCCCCChhHHHHHHHHHHHcCCCCeEEE
Q 022337 173 EVYKLLSLADLDSSFLNKTGGEISVGQAQRVALARTLANEPEVLLL 218 (298)
Q Consensus 173 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkQRv~iAral~~~p~illL 218 (298)
.+.++++.++... ...++|.++.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~-----~~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPE-----DPTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCS-----CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCC-----ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 4555666666532 1347889988888777667778999887
No 490
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.67 E-value=0.0034 Score=52.45 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998744
No 491
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.59 E-value=0.019 Score=52.42 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=28.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcCCCCCccEEEECCEeC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI 128 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl~~p~~G~I~i~g~~i 128 (298)
.+..-+.|.||.|+|||||.+.++.... ...-+.+++.++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~~~i~~~~l 82 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN-NSTFFSISSSDL 82 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEEEEEECCSS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC-CCcEEEEEhHHH
Confidence 3456688999999999999999998652 122345555443
No 492
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.56 E-value=0.087 Score=46.18 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=38.2
Q ss_pred CCCCeEEEeCcCCCCCHHHHHHHHHHHHHHHhcCCcEEEEEccC----------HHHHHhhcCEEEEEe
Q 022337 211 NEPEVLLLDEPTSALDPISTQNIEDVLVKLKKKHGMTIVMVSHS----------IKQIQRIADVVCLLV 269 (298)
Q Consensus 211 ~~p~illLDEPts~LD~~~~~~~~~~l~~l~~~~g~tii~itHd----------~~~~~~~~d~v~vl~ 269 (298)
.+.+++++||.--..| ..++.+.+. . .|+.||+.-+| ...+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~---~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMA---N-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHH---H-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHH---h-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999988754 444444443 3 48999999999 445567899998763
No 493
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.54 E-value=0.013 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 022337 92 IMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 92 ~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
.++|+|+.|+|||||++.|.|.-
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999964
No 494
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.54 E-value=0.019 Score=50.98 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+..+.|.||.|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457799999999999999999866
No 495
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.54 E-value=0.016 Score=54.04 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
++..++++|++|+|||||++.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999986
No 496
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.50 E-value=0.026 Score=49.36 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHhcCCCC
Q 022337 89 KGVIMGIIGPSGSGKSTLLRALNRLWEP 116 (298)
Q Consensus 89 ~Ge~~~iiG~nGsGKSTLlk~l~gl~~p 116 (298)
.+..+.|.||+|+|||+|.+.|......
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~ 55 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSR 55 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTT
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCc
Confidence 4567889999999999999999987653
No 497
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.50 E-value=0.022 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
No 498
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.50 E-value=0.018 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHhcC
Q 022337 88 PKGVIMGIIGPSGSGKSTLLRALNRL 113 (298)
Q Consensus 88 ~~Ge~~~iiG~nGsGKSTLlk~l~gl 113 (298)
.+...+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34456889999999999999999874
No 499
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.46 E-value=0.019 Score=52.89 Aligned_cols=25 Identities=44% Similarity=0.667 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+..+.|.||+|+||||+.+.|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4457899999999999999999876
No 500
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.44 E-value=0.023 Score=52.16 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHhcCC
Q 022337 90 GVIMGIIGPSGSGKSTLLRALNRLW 114 (298)
Q Consensus 90 Ge~~~iiG~nGsGKSTLlk~l~gl~ 114 (298)
+..+.|.||.|+|||||++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5589999999999999999998754
Done!